0s autopkgtest [12:53:49]: starting date and time: 2024-11-13 12:53:49+0000 0s autopkgtest [12:53:49]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [12:53:49]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.obsolvha/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade hdmf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-17.secgroup --name adt-plucky-ppc64el-hdmf-20241113-125347-juju-7f2275-prod-proposed-migration-environment-20-6f313e9a-a811-47d6-b7b5-8f165580d089 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 96s autopkgtest [12:55:25]: testbed dpkg architecture: ppc64el 96s autopkgtest [12:55:25]: testbed apt version: 2.9.8 96s autopkgtest [12:55:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 97s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 97s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 97s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [967 kB] 97s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB] 97s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.5 kB] 97s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [107 kB] 97s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [668 kB] 97s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [20.4 kB] 98s Fetched 1963 kB in 1s (1900 kB/s) 98s Reading package lists... 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 101s Calculating upgrade... 101s The following NEW packages will be installed: 101s python3.13-gdbm 101s The following packages will be upgraded: 101s libpython3-stdlib python3 python3-gdbm python3-minimal 101s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 101s Need to get 102 kB of archives. 101s After this operation, 141 kB of additional disk space will be used. 101s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-minimal ppc64el 3.12.7-1 [27.4 kB] 101s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3 ppc64el 3.12.7-1 [24.0 kB] 101s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libpython3-stdlib ppc64el 3.12.7-1 [10.0 kB] 101s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-gdbm ppc64el 3.13.0-2 [31.5 kB] 101s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-gdbm ppc64el 3.12.7-1 [8640 B] 101s Fetched 102 kB in 0s (299 kB/s) 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 102s Preparing to unpack .../python3-minimal_3.12.7-1_ppc64el.deb ... 102s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 102s Setting up python3-minimal (3.12.7-1) ... 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 102s Preparing to unpack .../python3_3.12.7-1_ppc64el.deb ... 102s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 102s Preparing to unpack .../libpython3-stdlib_3.12.7-1_ppc64el.deb ... 102s Unpacking libpython3-stdlib:ppc64el (3.12.7-1) over (3.12.6-0ubuntu1) ... 102s Selecting previously unselected package python3.13-gdbm. 102s Preparing to unpack .../python3.13-gdbm_3.13.0-2_ppc64el.deb ... 102s Unpacking python3.13-gdbm (3.13.0-2) ... 102s Preparing to unpack .../python3-gdbm_3.12.7-1_ppc64el.deb ... 102s Unpacking python3-gdbm:ppc64el (3.12.7-1) over (3.12.6-1ubuntu1) ... 102s Setting up python3.13-gdbm (3.13.0-2) ... 102s Setting up libpython3-stdlib:ppc64el (3.12.7-1) ... 102s Setting up python3 (3.12.7-1) ... 102s Setting up python3-gdbm:ppc64el (3.12.7-1) ... 102s Processing triggers for man-db (2.12.1-3) ... 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 104s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 104s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 104s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 105s Reading package lists... 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s Calculating upgrade... 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s autopkgtest [12:55:38]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024 109s autopkgtest [12:55:38]: @@@@@@@@@@@@@@@@@@@@ apt-source hdmf 111s Get:1 http://ftpmaster.internal/ubuntu plucky/universe hdmf 3.14.5-1 (dsc) [2399 B] 111s Get:2 http://ftpmaster.internal/ubuntu plucky/universe hdmf 3.14.5-1 (tar) [15.8 MB] 111s Get:3 http://ftpmaster.internal/ubuntu plucky/universe hdmf 3.14.5-1 (diff) [6460 B] 111s gpgv: Signature made Sat Nov 2 15:04:50 2024 UTC 111s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 111s gpgv: issuer "emollier@debian.org" 111s gpgv: Can't check signature: No public key 111s dpkg-source: warning: cannot verify inline signature for ./hdmf_3.14.5-1.dsc: no acceptable signature found 112s autopkgtest [12:55:41]: testing package hdmf version 3.14.5-1 112s autopkgtest [12:55:41]: build not needed 114s autopkgtest [12:55:43]: test run-unit-test: preparing testbed 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s Starting pkgProblemResolver with broken count: 0 117s Starting 2 pkgProblemResolver with broken count: 0 117s Done 117s The following additional packages will be installed: 117s libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 liblapack3 117s liblbfgsb0 liblzf1 libpython3.13-minimal libpython3.13-stdlib libsz2 117s python3-all python3-dateutil python3-decorator python3-h5py 117s python3-h5py-serial python3-hdmf python3-numpy python3-pandas 117s python3-pandas-lib python3-ruamel.yaml python3-ruamel.yaml.clib 117s python3-scipy python3-six python3-tz python3.13 python3.13-minimal 117s Suggested packages: 117s python-h5py-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 117s python-pandas-doc python3-statsmodels python-scipy-doc python3.13-venv 117s python3.13-doc binfmt-support 117s Recommended packages: 117s python3-matplotlib python3-bottleneck python3-numexpr python3-odf 117s python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables 117s g++ | c++-compiler python3-pil 117s The following NEW packages will be installed: 117s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1t64 117s libhdf5-hl-100t64 liblapack3 liblbfgsb0 liblzf1 libpython3.13-minimal 117s libpython3.13-stdlib libsz2 python3-all python3-dateutil python3-decorator 117s python3-h5py python3-h5py-serial python3-hdmf python3-numpy python3-pandas 117s python3-pandas-lib python3-ruamel.yaml python3-ruamel.yaml.clib 117s python3-scipy python3-six python3-tz python3.13 python3.13-minimal 117s 0 upgraded, 28 newly installed, 0 to remove and 0 not upgraded. 117s Need to get 43.6 MB/43.7 MB of archives. 117s After this operation, 206 MB of additional disk space will be used. 117s Get:1 /tmp/autopkgtest.1uSS2B/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 117s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-minimal ppc64el 3.13.0-2 [881 kB] 118s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-minimal ppc64el 3.13.0-2 [2302 kB] 118s Get:4 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libaec0 ppc64el 1.1.3-1 [30.1 kB] 118s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-3build2 [222 kB] 118s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-8ubuntu1 [571 kB] 118s Get:7 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libsz2 ppc64el 1.1.3-1 [5566 B] 118s Get:8 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-103-1t64 ppc64el 1.10.10+repack-4ubuntu3 [1387 kB] 118s Get:9 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-hl-100t64 ppc64el 1.10.10+repack-4ubuntu3 [71.2 kB] 118s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-3build2 [2806 kB] 118s Get:11 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB] 118s Get:12 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblzf1 ppc64el 3.6-4 [7920 B] 118s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-stdlib ppc64el 3.13.0-2 [2148 kB] 118s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13 ppc64el 3.13.0-2 [719 kB] 118s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-all ppc64el 3.12.7-1 [888 B] 118s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-six all 1.16.0-7 [13.1 kB] 118s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dateutil all 2.9.0-2 [80.3 kB] 118s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 118s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-11build1 [4434 kB] 118s Get:20 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-h5py-serial ppc64el 3.11.0-5ubuntu1 [1159 kB] 118s Get:21 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-h5py all 3.11.0-5ubuntu1 [7974 B] 118s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tz all 2024.1-2 [31.4 kB] 118s Get:23 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pandas-lib ppc64el 2.2.3+dfsg-5 [4761 kB] 119s Get:24 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pandas all 2.2.3+dfsg-5 [3112 kB] 119s Get:25 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-scipy ppc64el 1.13.1-5 [18.3 MB] 119s Get:26 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-ruamel.yaml.clib ppc64el 0.2.8+ds-2 [161 kB] 119s Get:27 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-ruamel.yaml all 0.18.6+ds-3 [126 kB] 119s Get:28 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-hdmf all 3.14.5-1 [235 kB] 120s Fetched 43.6 MB in 2s (22.1 MB/s) 120s Selecting previously unselected package libpython3.13-minimal:ppc64el. 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73774 files and directories currently installed.) 120s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_ppc64el.deb ... 120s Unpacking libpython3.13-minimal:ppc64el (3.13.0-2) ... 120s Selecting previously unselected package python3.13-minimal. 120s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_ppc64el.deb ... 120s Unpacking python3.13-minimal (3.13.0-2) ... 120s Selecting previously unselected package libaec0:ppc64el. 120s Preparing to unpack .../02-libaec0_1.1.3-1_ppc64el.deb ... 120s Unpacking libaec0:ppc64el (1.1.3-1) ... 120s Selecting previously unselected package libblas3:ppc64el. 120s Preparing to unpack .../03-libblas3_3.12.0-3build2_ppc64el.deb ... 120s Unpacking libblas3:ppc64el (3.12.0-3build2) ... 120s Selecting previously unselected package libgfortran5:ppc64el. 120s Preparing to unpack .../04-libgfortran5_14.2.0-8ubuntu1_ppc64el.deb ... 120s Unpacking libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 120s Selecting previously unselected package libsz2:ppc64el. 120s Preparing to unpack .../05-libsz2_1.1.3-1_ppc64el.deb ... 120s Unpacking libsz2:ppc64el (1.1.3-1) ... 120s Selecting previously unselected package libhdf5-103-1t64:ppc64el. 120s Preparing to unpack .../06-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_ppc64el.deb ... 120s Unpacking libhdf5-103-1t64:ppc64el (1.10.10+repack-4ubuntu3) ... 120s Selecting previously unselected package libhdf5-hl-100t64:ppc64el. 120s Preparing to unpack .../07-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_ppc64el.deb ... 120s Unpacking libhdf5-hl-100t64:ppc64el (1.10.10+repack-4ubuntu3) ... 120s Selecting previously unselected package liblapack3:ppc64el. 120s Preparing to unpack .../08-liblapack3_3.12.0-3build2_ppc64el.deb ... 120s Unpacking liblapack3:ppc64el (3.12.0-3build2) ... 120s Selecting previously unselected package liblbfgsb0:ppc64el. 120s Preparing to unpack .../09-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ... 120s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 120s Selecting previously unselected package liblzf1:ppc64el. 120s Preparing to unpack .../10-liblzf1_3.6-4_ppc64el.deb ... 120s Unpacking liblzf1:ppc64el (3.6-4) ... 120s Selecting previously unselected package libpython3.13-stdlib:ppc64el. 120s Preparing to unpack .../11-libpython3.13-stdlib_3.13.0-2_ppc64el.deb ... 120s Unpacking libpython3.13-stdlib:ppc64el (3.13.0-2) ... 120s Selecting previously unselected package python3.13. 120s Preparing to unpack .../12-python3.13_3.13.0-2_ppc64el.deb ... 120s Unpacking python3.13 (3.13.0-2) ... 120s Selecting previously unselected package python3-all. 120s Preparing to unpack .../13-python3-all_3.12.7-1_ppc64el.deb ... 120s Unpacking python3-all (3.12.7-1) ... 120s Selecting previously unselected package python3-six. 120s Preparing to unpack .../14-python3-six_1.16.0-7_all.deb ... 120s Unpacking python3-six (1.16.0-7) ... 120s Selecting previously unselected package python3-dateutil. 120s Preparing to unpack .../15-python3-dateutil_2.9.0-2_all.deb ... 120s Unpacking python3-dateutil (2.9.0-2) ... 120s Selecting previously unselected package python3-decorator. 120s Preparing to unpack .../16-python3-decorator_5.1.1-5_all.deb ... 120s Unpacking python3-decorator (5.1.1-5) ... 120s Selecting previously unselected package python3-numpy. 120s Preparing to unpack .../17-python3-numpy_1%3a1.26.4+ds-11build1_ppc64el.deb ... 120s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 120s Selecting previously unselected package python3-h5py-serial. 120s Preparing to unpack .../18-python3-h5py-serial_3.11.0-5ubuntu1_ppc64el.deb ... 120s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 120s Selecting previously unselected package python3-h5py. 120s Preparing to unpack .../19-python3-h5py_3.11.0-5ubuntu1_all.deb ... 120s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 120s Selecting previously unselected package python3-tz. 120s Preparing to unpack .../20-python3-tz_2024.1-2_all.deb ... 120s Unpacking python3-tz (2024.1-2) ... 120s Selecting previously unselected package python3-pandas-lib:ppc64el. 120s Preparing to unpack .../21-python3-pandas-lib_2.2.3+dfsg-5_ppc64el.deb ... 120s Unpacking python3-pandas-lib:ppc64el (2.2.3+dfsg-5) ... 121s Selecting previously unselected package python3-pandas. 121s Preparing to unpack .../22-python3-pandas_2.2.3+dfsg-5_all.deb ... 121s Unpacking python3-pandas (2.2.3+dfsg-5) ... 121s Selecting previously unselected package python3-scipy. 121s Preparing to unpack .../23-python3-scipy_1.13.1-5_ppc64el.deb ... 121s Unpacking python3-scipy (1.13.1-5) ... 121s Selecting previously unselected package python3-ruamel.yaml.clib:ppc64el. 121s Preparing to unpack .../24-python3-ruamel.yaml.clib_0.2.8+ds-2_ppc64el.deb ... 121s Unpacking python3-ruamel.yaml.clib:ppc64el (0.2.8+ds-2) ... 121s Selecting previously unselected package python3-ruamel.yaml. 121s Preparing to unpack .../25-python3-ruamel.yaml_0.18.6+ds-3_all.deb ... 121s Unpacking python3-ruamel.yaml (0.18.6+ds-3) ... 121s Selecting previously unselected package python3-hdmf. 121s Preparing to unpack .../26-python3-hdmf_3.14.5-1_all.deb ... 121s Unpacking python3-hdmf (3.14.5-1) ... 121s Selecting previously unselected package autopkgtest-satdep. 121s Preparing to unpack .../27-1-autopkgtest-satdep.deb ... 121s Unpacking autopkgtest-satdep (0) ... 121s Setting up python3-ruamel.yaml.clib:ppc64el (0.2.8+ds-2) ... 121s Setting up libaec0:ppc64el (1.1.3-1) ... 121s Setting up python3-tz (2024.1-2) ... 122s Setting up python3-six (1.16.0-7) ... 122s Setting up libpython3.13-minimal:ppc64el (3.13.0-2) ... 122s Setting up python3-decorator (5.1.1-5) ... 122s Setting up libblas3:ppc64el (3.12.0-3build2) ... 122s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 122s Setting up liblzf1:ppc64el (3.6-4) ... 122s Setting up libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 122s Setting up python3-ruamel.yaml (0.18.6+ds-3) ... 123s Setting up python3.13-minimal (3.13.0-2) ... 124s Setting up python3-dateutil (2.9.0-2) ... 124s Setting up libpython3.13-stdlib:ppc64el (3.13.0-2) ... 124s Setting up libsz2:ppc64el (1.1.3-1) ... 124s Setting up liblapack3:ppc64el (3.12.0-3build2) ... 124s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 124s Setting up python3.13 (3.13.0-2) ... 125s Setting up python3-all (3.12.7-1) ... 125s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 129s Setting up libhdf5-103-1t64:ppc64el (1.10.10+repack-4ubuntu3) ... 129s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 129s Setting up libhdf5-hl-100t64:ppc64el (1.10.10+repack-4ubuntu3) ... 129s Setting up python3-scipy (1.13.1-5) ... 137s Setting up python3-pandas-lib:ppc64el (2.2.3+dfsg-5) ... 137s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 138s Setting up python3-pandas (2.2.3+dfsg-5) ... 149s Setting up python3-h5py (3.11.0-5ubuntu1) ... 150s Setting up python3-hdmf (3.14.5-1) ... 150s Setting up autopkgtest-satdep (0) ... 150s Processing triggers for systemd (256.5-2ubuntu4) ... 150s Processing triggers for man-db (2.12.1-3) ... 150s Processing triggers for libc-bin (2.40-1ubuntu3) ... 153s (Reading database ... 78988 files and directories currently installed.) 153s Removing autopkgtest-satdep (0) ... 154s autopkgtest [12:56:23]: test run-unit-test: [----------------------- 154s Testing with python3.13 in /tmp/autopkgtest.1uSS2B/autopkgtest_tmp: 155s tests.unit.back_compat_tests.test_1_1_0 (unittest.loader._FailedTest.tests.unit.back_compat_tests.test_1_1_0) ... ERROR 155s tests.unit.build_tests.mapper_tests.test_build (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build) ... ERROR 155s tests.unit.build_tests.mapper_tests.test_build_datetime (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_datetime) ... ERROR 155s tests.unit.build_tests.mapper_tests.test_build_quantity (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_quantity) ... ERROR 155s tests.unit.build_tests.test_builder (unittest.loader._FailedTest.tests.unit.build_tests.test_builder) ... ERROR 155s tests.unit.build_tests.test_classgenerator (unittest.loader._FailedTest.tests.unit.build_tests.test_classgenerator) ... ERROR 155s tests.unit.build_tests.test_convert_dtype (unittest.loader._FailedTest.tests.unit.build_tests.test_convert_dtype) ... ERROR 155s tests.unit.build_tests.test_io_manager (unittest.loader._FailedTest.tests.unit.build_tests.test_io_manager) ... ERROR 155s tests.unit.build_tests.test_io_map (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map) ... ERROR 155s tests.unit.build_tests.test_io_map_data (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map_data) ... ERROR 155s tests.unit.common.test_alignedtable (unittest.loader._FailedTest.tests.unit.common.test_alignedtable) ... ERROR 155s tests.unit.common.test_common (unittest.loader._FailedTest.tests.unit.common.test_common) ... ERROR 155s tests.unit.common.test_common_io (unittest.loader._FailedTest.tests.unit.common.test_common_io) ... ERROR 155s tests.unit.common.test_generate_table (unittest.loader._FailedTest.tests.unit.common.test_generate_table) ... ERROR 155s tests.unit.common.test_linkedtables (unittest.loader._FailedTest.tests.unit.common.test_linkedtables) ... ERROR 155s tests.unit.common.test_multi (unittest.loader._FailedTest.tests.unit.common.test_multi) ... ERROR 155s tests.unit.common.test_resources (unittest.loader._FailedTest.tests.unit.common.test_resources) ... ERROR 155s tests.unit.common.test_sparse (unittest.loader._FailedTest.tests.unit.common.test_sparse) ... ERROR 155s tests.unit.common.test_table (unittest.loader._FailedTest.tests.unit.common.test_table) ... ERROR 155s tests.unit.spec_tests.test_attribute_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_attribute_spec) ... ERROR 155s tests.unit.spec_tests.test_dataset_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dataset_spec) ... ERROR 155s tests.unit.spec_tests.test_dtype_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dtype_spec) ... ERROR 155s tests.unit.spec_tests.test_group_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_group_spec) ... ERROR 155s tests.unit.spec_tests.test_link_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_link_spec) ... ERROR 155s tests.unit.spec_tests.test_load_namespace (unittest.loader._FailedTest.tests.unit.spec_tests.test_load_namespace) ... ERROR 155s tests.unit.spec_tests.test_ref_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_ref_spec) ... ERROR 155s tests.unit.spec_tests.test_spec_catalog (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_catalog) ... ERROR 155s tests.unit.spec_tests.test_spec_write (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_write) ... ERROR 155s tests.unit.test_container (unittest.loader._FailedTest.tests.unit.test_container) ... ERROR 155s tests.unit.test_io_hdf5 (unittest.loader._FailedTest.tests.unit.test_io_hdf5) ... ERROR 155s tests.unit.test_io_hdf5_h5tools (unittest.loader._FailedTest.tests.unit.test_io_hdf5_h5tools) ... ERROR 155s tests.unit.test_io_hdf5_streaming (unittest.loader._FailedTest.tests.unit.test_io_hdf5_streaming) ... ERROR 155s tests.unit.test_multicontainerinterface (unittest.loader._FailedTest.tests.unit.test_multicontainerinterface) ... ERROR 155s tests.unit.test_query (unittest.loader._FailedTest.tests.unit.test_query) ... ERROR 155s tests.unit.test_table (unittest.loader._FailedTest.tests.unit.test_table) ... ERROR 155s tests.unit.test_term_set (unittest.loader._FailedTest.tests.unit.test_term_set) ... ERROR 155s tests.unit.utils_test.test_core_DataChunk (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunk) ... ERROR 155s tests.unit.utils_test.test_core_DataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunkIterator) ... ERROR 155s tests.unit.utils_test.test_core_DataIO (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataIO) ... ERROR 155s tests.unit.utils_test.test_core_GenericDataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_GenericDataChunkIterator) ... ERROR 155s tests.unit.utils_test.test_core_ShapeValidator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_ShapeValidator) ... ERROR 155s tests.unit.utils_test.test_data_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_data_utils) ... ERROR 155s tests.unit.utils_test.test_docval (unittest.loader._FailedTest.tests.unit.utils_test.test_docval) ... ERROR 155s tests.unit.utils_test.test_labelleddict (unittest.loader._FailedTest.tests.unit.utils_test.test_labelleddict) ... ERROR 155s tests.unit.utils_test.test_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_utils) ... ERROR 155s tests.unit.validator_tests.test_errors (unittest.loader._FailedTest.tests.unit.validator_tests.test_errors) ... ERROR 155s tests.unit.validator_tests.test_validate (unittest.loader._FailedTest.tests.unit.validator_tests.test_validate) ... ERROR 155s 155s ====================================================================== 155s ERROR: tests.unit.back_compat_tests.test_1_1_0 (unittest.loader._FailedTest.tests.unit.back_compat_tests.test_1_1_0) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.back_compat_tests.test_1_1_0 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/back_compat_tests/test_1_1_0.py", line 4, in 155s from hdmf.backends.hdf5.h5tools import HDF5IO 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.build_tests.mapper_tests.test_build (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.build_tests.mapper_tests.test_build 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/build_tests/mapper_tests/test_build.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.build_tests.mapper_tests.test_build_datetime (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_datetime) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.build_tests.mapper_tests.test_build_datetime 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/build_tests/mapper_tests/test_build_datetime.py", line 1, in 155s from hdmf.utils import docval, getargs 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.build_tests.mapper_tests.test_build_quantity (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_quantity) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.build_tests.mapper_tests.test_build_quantity 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/build_tests/mapper_tests/test_build_quantity.py", line 1, in 155s from hdmf import Container, Data 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.build_tests.test_builder (unittest.loader._FailedTest.tests.unit.build_tests.test_builder) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.build_tests.test_builder 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/build_tests/test_builder.py", line 1, in 155s from hdmf.build import GroupBuilder, DatasetBuilder, LinkBuilder, ReferenceBuilder, RegionBuilder 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.build_tests.test_classgenerator (unittest.loader._FailedTest.tests.unit.build_tests.test_classgenerator) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.build_tests.test_classgenerator 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/build_tests/test_classgenerator.py", line 1, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.build_tests.test_convert_dtype (unittest.loader._FailedTest.tests.unit.build_tests.test_convert_dtype) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.build_tests.test_convert_dtype 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/build_tests/test_convert_dtype.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.build_tests.test_io_manager (unittest.loader._FailedTest.tests.unit.build_tests.test_io_manager) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.build_tests.test_io_manager 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/build_tests/test_io_manager.py", line 3, in 155s from hdmf.build import GroupBuilder, DatasetBuilder, ObjectMapper, BuildManager, TypeMap, ContainerConfigurationError 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.build_tests.test_io_map (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.build_tests.test_io_map 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/build_tests/test_io_map.py", line 1, in 155s from hdmf.utils import StrDataset, docval, getargs 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.build_tests.test_io_map_data (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map_data) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.build_tests.test_io_map_data 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 155s from . import _debian_h5py_serial as _h5py 155s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 155s from . import _errors 155s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/build_tests/test_io_map_data.py", line 3, in 155s import h5py 155s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 155s from . import _debian_h5py_mpi as _h5py 155s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.common.test_alignedtable (unittest.loader._FailedTest.tests.unit.common.test_alignedtable) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.common.test_alignedtable 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/common/test_alignedtable.py", line 1, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.common.test_common (unittest.loader._FailedTest.tests.unit.common.test_common) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.common.test_common 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/common/test_common.py", line 1, in 155s from hdmf import Data, Container 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.common.test_common_io (unittest.loader._FailedTest.tests.unit.common.test_common_io) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.common.test_common_io 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 155s from . import _debian_h5py_serial as _h5py 155s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 155s from . import _errors 155s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/common/test_common_io.py", line 1, in 155s from h5py import File 155s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 155s from . import _debian_h5py_mpi as _h5py 155s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.common.test_generate_table (unittest.loader._FailedTest.tests.unit.common.test_generate_table) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.common.test_generate_table 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/common/test_generate_table.py", line 1, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.common.test_linkedtables (unittest.loader._FailedTest.tests.unit.common.test_linkedtables) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.common.test_linkedtables 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/common/test_linkedtables.py", line 6, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.common.test_multi (unittest.loader._FailedTest.tests.unit.common.test_multi) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.common.test_multi 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/common/test_multi.py", line 1, in 155s from hdmf.common import SimpleMultiContainer 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.common.test_resources (unittest.loader._FailedTest.tests.unit.common.test_resources) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.common.test_resources 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/common/test_resources.py", line 1, in 155s import pandas as pd 155s File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 19, in 155s raise ImportError( 155s "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies) 155s ) 155s ImportError: Unable to import required dependencies: 155s numpy: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.common.test_sparse (unittest.loader._FailedTest.tests.unit.common.test_sparse) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.common.test_sparse 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/common/test_sparse.py", line 1, in 155s from hdmf.common import CSRMatrix 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.common.test_table (unittest.loader._FailedTest.tests.unit.common.test_table) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.common.test_table 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 155s from . import _debian_h5py_serial as _h5py 155s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 155s from . import _errors 155s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/common/test_table.py", line 2, in 155s import h5py 155s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 155s from . import _debian_h5py_mpi as _h5py 155s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.spec_tests.test_attribute_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_attribute_spec) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.spec_tests.test_attribute_spec 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/spec_tests/test_attribute_spec.py", line 3, in 155s from hdmf.spec import AttributeSpec, RefSpec 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.spec_tests.test_dataset_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dataset_spec) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.spec_tests.test_dataset_spec 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/spec_tests/test_dataset_spec.py", line 3, in 155s from hdmf.spec import GroupSpec, DatasetSpec, AttributeSpec, DtypeSpec, RefSpec 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.spec_tests.test_dtype_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dtype_spec) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.spec_tests.test_dtype_spec 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/spec_tests/test_dtype_spec.py", line 1, in 155s from hdmf.spec import DtypeSpec, DtypeHelper, RefSpec 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.spec_tests.test_group_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_group_spec) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.spec_tests.test_group_spec 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/spec_tests/test_group_spec.py", line 3, in 155s from hdmf.spec import GroupSpec, DatasetSpec, AttributeSpec, LinkSpec 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.spec_tests.test_link_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_link_spec) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.spec_tests.test_link_spec 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/spec_tests/test_link_spec.py", line 3, in 155s from hdmf.spec import GroupSpec, LinkSpec 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.spec_tests.test_load_namespace (unittest.loader._FailedTest.tests.unit.spec_tests.test_load_namespace) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.spec_tests.test_load_namespace 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/spec_tests/test_load_namespace.py", line 7, in 155s from hdmf.common import get_type_map 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.spec_tests.test_ref_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_ref_spec) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.spec_tests.test_ref_spec 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/spec_tests/test_ref_spec.py", line 3, in 155s from hdmf.spec import RefSpec 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.spec_tests.test_spec_catalog (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_catalog) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.spec_tests.test_spec_catalog 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/spec_tests/test_spec_catalog.py", line 3, in 155s from hdmf.spec import GroupSpec, DatasetSpec, AttributeSpec, SpecCatalog 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.spec_tests.test_spec_write (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_write) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.spec_tests.test_spec_write 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/spec_tests/test_spec_write.py", line 4, in 155s from hdmf.spec.namespace import SpecNamespace, NamespaceCatalog 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.test_container (unittest.loader._FailedTest.tests.unit.test_container) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.test_container 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/test_container.py", line 1, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.test_io_hdf5 (unittest.loader._FailedTest.tests.unit.test_io_hdf5) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.test_io_hdf5 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/test_io_hdf5.py", line 5, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.test_io_hdf5_h5tools (unittest.loader._FailedTest.tests.unit.test_io_hdf5_h5tools) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.test_io_hdf5_h5tools 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 155s from . import _debian_h5py_serial as _h5py 155s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 155s from . import _errors 155s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/test_io_hdf5_h5tools.py", line 12, in 155s import h5py 155s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 155s from . import _debian_h5py_mpi as _h5py 155s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.test_io_hdf5_streaming (unittest.loader._FailedTest.tests.unit.test_io_hdf5_streaming) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.test_io_hdf5_streaming 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 155s from . import _debian_h5py_serial as _h5py 155s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 155s from . import _errors 155s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/test_io_hdf5_streaming.py", line 4, in 155s import h5py 155s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 155s from . import _debian_h5py_mpi as _h5py 155s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.test_multicontainerinterface (unittest.loader._FailedTest.tests.unit.test_multicontainerinterface) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.test_multicontainerinterface 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/test_multicontainerinterface.py", line 3, in 155s from hdmf.container import Container, Data, MultiContainerInterface 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.test_query (unittest.loader._FailedTest.tests.unit.test_query) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.test_query 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/test_query.py", line 4, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.test_table (unittest.loader._FailedTest.tests.unit.test_table) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.test_table 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/test_table.py", line 1, in 155s import pandas as pd 155s File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 19, in 155s raise ImportError( 155s "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies) 155s ) 155s ImportError: Unable to import required dependencies: 155s numpy: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.test_term_set (unittest.loader._FailedTest.tests.unit.test_term_set) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.test_term_set 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/test_term_set.py", line 2, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.utils_test.test_core_DataChunk (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunk) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.utils_test.test_core_DataChunk 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/utils_test/test_core_DataChunk.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.utils_test.test_core_DataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunkIterator) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.utils_test.test_core_DataChunkIterator 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/utils_test/test_core_DataChunkIterator.py", line 1, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.utils_test.test_core_DataIO (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataIO) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.utils_test.test_core_DataIO 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/utils_test/test_core_DataIO.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.utils_test.test_core_GenericDataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_GenericDataChunkIterator) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.utils_test.test_core_GenericDataChunkIterator 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/utils_test/test_core_GenericDataChunkIterator.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.utils_test.test_core_ShapeValidator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_ShapeValidator) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.utils_test.test_core_ShapeValidator 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/utils_test/test_core_ShapeValidator.py", line 1, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.utils_test.test_data_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_data_utils) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.utils_test.test_data_utils 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/utils_test/test_data_utils.py", line 1, in 155s from hdmf.data_utils import append_data 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.utils_test.test_docval (unittest.loader._FailedTest.tests.unit.utils_test.test_docval) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.utils_test.test_docval 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/utils_test/test_docval.py", line 1, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.utils_test.test_labelleddict (unittest.loader._FailedTest.tests.unit.utils_test.test_labelleddict) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.utils_test.test_labelleddict 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/utils_test/test_labelleddict.py", line 1, in 155s from hdmf.testing import TestCase 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.utils_test.test_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_utils) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.utils_test.test_utils 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 155s from . import _debian_h5py_serial as _h5py 155s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 155s from . import _errors 155s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/utils_test/test_utils.py", line 3, in 155s import h5py 155s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 155s from . import _debian_h5py_mpi as _h5py 155s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.validator_tests.test_errors (unittest.loader._FailedTest.tests.unit.validator_tests.test_errors) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.validator_tests.test_errors 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/validator_tests/test_errors.py", line 3, in 155s from hdmf.validate.errors import Error 155s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 155s from . import query 155s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ====================================================================== 155s ERROR: tests.unit.validator_tests.test_validate (unittest.loader._FailedTest.tests.unit.validator_tests.test_validate) 155s ---------------------------------------------------------------------- 155s ImportError: Failed to import test module: tests.unit.validator_tests.test_validate 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 155s from . import multiarray 155s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 155s from . import overrides 155s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 155s from numpy.core._multiarray_umath import ( 155s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 155s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 155s 155s During handling of the above exception, another exception occurred: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 155s from numpy.__config__ import show as show_config 155s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 155s from numpy.core._multiarray_umath import ( 155s ...<3 lines>... 155s ) 155s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 155s raise ImportError(msg) 155s ImportError: 155s 155s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 155s 155s Importing the numpy C-extensions failed. This error can happen for 155s many reasons, often due to issues with your setup or how NumPy was 155s installed. 155s 155s We have compiled some common reasons and troubleshooting tips at: 155s 155s https://numpy.org/devdocs/user/troubleshooting-importerror.html 155s 155s Please note and check the following: 155s 155s * The Python version is: Python3.13 from "/usr/bin/python3.13" 155s * The NumPy version is: "1.26.4" 155s 155s and make sure that they are the versions you expect. 155s Please carefully study the documentation linked above for further help. 155s 155s Original error was: No module named 'numpy.core._multiarray_umath' 155s 155s 155s The above exception was the direct cause of the following exception: 155s 155s Traceback (most recent call last): 155s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 155s module = self._get_module_from_name(name) 155s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 155s __import__(name) 155s ~~~~~~~~~~^^^^^^ 155s File "/tmp/autopkgtest.1uSS2B/autopkgtest_tmp/tests/unit/validator_tests/test_validate.py", line 5, in 155s import numpy as np 155s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 155s raise ImportError(msg) from e 155s ImportError: Error importing numpy: you should not try to import numpy from 155s its source directory; please exit the numpy source tree, and relaunch 155s your python interpreter from there. 155s 155s 155s ---------------------------------------------------------------------- 155s Ran 47 tests in 0.005s 155s 155s FAILED (errors=47) 155s autopkgtest [12:56:24]: test run-unit-test: -----------------------] 156s autopkgtest [12:56:25]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 156s run-unit-test FAIL non-zero exit status 1 156s autopkgtest [12:56:25]: test autodep8-python3: preparing testbed 158s Reading package lists... 158s Building dependency tree... 158s Reading state information... 158s Starting pkgProblemResolver with broken count: 0 158s Starting 2 pkgProblemResolver with broken count: 0 158s Done 159s The following NEW packages will be installed: 159s autopkgtest-satdep 159s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 159s Need to get 0 B/716 B of archives. 159s After this operation, 0 B of additional disk space will be used. 159s Get:1 /tmp/autopkgtest.1uSS2B/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 159s Selecting previously unselected package autopkgtest-satdep. 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78988 files and directories currently installed.) 159s Preparing to unpack .../2-autopkgtest-satdep.deb ... 159s Unpacking autopkgtest-satdep (0) ... 159s Setting up autopkgtest-satdep (0) ... 161s (Reading database ... 78988 files and directories currently installed.) 161s Removing autopkgtest-satdep (0) ... 162s autopkgtest [12:56:31]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import hdmf; print(hdmf)" ; done 162s autopkgtest [12:56:31]: test autodep8-python3: [----------------------- 162s Testing with python3.13: 162s Traceback (most recent call last): 162s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 162s from . import multiarray 162s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 162s from . import overrides 162s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 162s from numpy.core._multiarray_umath import ( 162s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 162s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 162s 162s During handling of the above exception, another exception occurred: 162s 162s Traceback (most recent call last): 162s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 162s from numpy.__config__ import show as show_config 162s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 162s from numpy.core._multiarray_umath import ( 162s ...<3 lines>... 162s ) 162s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 162s raise ImportError(msg) 162s ImportError: 162s 162s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 162s 162s Importing the numpy C-extensions failed. This error can happen for 162s many reasons, often due to issues with your setup or how NumPy was 162s installed. 162s 162s We have compiled some common reasons and troubleshooting tips at: 162s 162s https://numpy.org/devdocs/user/troubleshooting-importerror.html 162s 162s Please note and check the following: 162s 162s * The Python version is: Python3.13 from "/usr/bin/python3.13" 162s * The NumPy version is: "1.26.4" 162s 162s and make sure that they are the versions you expect. 162s Please carefully study the documentation linked above for further help. 162s 162s Original error was: No module named 'numpy.core._multiarray_umath' 162s 162s 162s The above exception was the direct cause of the following exception: 162s 162s Traceback (most recent call last): 162s File "", line 1, in 162s import hdmf; print(hdmf) 162s ^^^^^^^^^^^ 162s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 162s from . import query 162s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 162s import numpy as np 162s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 162s raise ImportError(msg) from e 162s ImportError: Error importing numpy: you should not try to import numpy from 162s its source directory; please exit the numpy source tree, and relaunch 162s your python interpreter from there. 162s autopkgtest [12:56:31]: test autodep8-python3: -----------------------] 163s autopkgtest [12:56:32]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 163s autodep8-python3 FAIL non-zero exit status 1 163s autopkgtest [12:56:32]: @@@@@@@@@@@@@@@@@@@@ summary 163s run-unit-test FAIL non-zero exit status 1 163s autodep8-python3 FAIL non-zero exit status 1 169s nova [W] Using flock in prodstack6-ppc64el 169s Creating nova instance adt-plucky-ppc64el-hdmf-20241113-125347-juju-7f2275-prod-proposed-migration-environment-20-6f313e9a-a811-47d6-b7b5-8f165580d089 from image adt/ubuntu-plucky-ppc64el-server-20241113.img (UUID 0c5715b6-5cca-4485-b8bf-b85dfd917a5f)...