0s autopkgtest [21:58:06]: starting date and time: 2025-01-21 21:58:06+0000 0s autopkgtest [21:58:06]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [21:58:06]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.yuo73_b6/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:libisal --apt-upgrade fastp --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=libisal/2.31.1-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-ppc64el-27.secgroup --name adt-plucky-ppc64el-fastp-20250121-215806-juju-7f2275-prod-proposed-migration-environment-2-5c6b9dfc-3de0-4093-8665-808a09429735 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 113s autopkgtest [21:59:59]: testbed dpkg architecture: ppc64el 114s autopkgtest [22:00:00]: testbed apt version: 2.9.18 114s autopkgtest [22:00:00]: @@@@@@@@@@@@@@@@@@@@ test bed setup 114s autopkgtest [22:00:00]: testbed release detected to be: None 115s autopkgtest [22:00:01]: updating testbed package index (apt update) 116s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 116s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 116s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 116s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 116s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9736 B] 116s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.6 kB] 116s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [642 kB] 116s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.1 kB] 116s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [175 kB] 116s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted ppc64el Packages [756 B] 116s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [722 kB] 117s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [13.8 kB] 117s Fetched 1749 kB in 1s (1204 kB/s) 119s Reading package lists... 119s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s Calculating upgrade... 120s The following packages will be upgraded: 120s ca-certificates krb5-locales libclang-cpp18 libgssapi-krb5-2 libk5crypto3 120s libkrb5-3 libkrb5support0 libllvm18 python3-openssl python3-urllib3 rsync 120s ucf ufw 121s 13 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 121s Need to get 44.8 MB of archives. 121s After this operation, 39.9 kB of additional disk space will be used. 121s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el rsync ppc64el 3.3.0+ds1-4 [494 kB] 121s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el ca-certificates all 20241223 [165 kB] 121s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el krb5-locales all 1.21.3-4 [14.5 kB] 121s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgssapi-krb5-2 ppc64el 1.21.3-4 [186 kB] 121s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libkrb5-3 ppc64el 1.21.3-4 [435 kB] 121s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libkrb5support0 ppc64el 1.21.3-4 [38.9 kB] 121s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libk5crypto3 ppc64el 1.21.3-4 [107 kB] 121s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el ucf all 3.0048 [42.8 kB] 121s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el ufw all 0.36.2-9 [170 kB] 121s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libclang-cpp18 ppc64el 1:18.1.8-15 [14.4 MB] 123s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libllvm18 ppc64el 1:18.1.8-15 [28.6 MB] 125s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-openssl all 25.0.0-1 [46.1 kB] 125s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-urllib3 all 2.3.0-1 [94.0 kB] 125s Preconfiguring packages ... 126s Fetched 44.8 MB in 4s (10.5 MB/s) 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74042 files and directories currently installed.) 126s Preparing to unpack .../00-rsync_3.3.0+ds1-4_ppc64el.deb ... 126s Unpacking rsync (3.3.0+ds1-4) over (3.3.0+ds1-2) ... 127s Preparing to unpack .../01-ca-certificates_20241223_all.deb ... 127s Unpacking ca-certificates (20241223) over (20240203) ... 127s Preparing to unpack .../02-krb5-locales_1.21.3-4_all.deb ... 127s Unpacking krb5-locales (1.21.3-4) over (1.21.3-3) ... 127s Preparing to unpack .../03-libgssapi-krb5-2_1.21.3-4_ppc64el.deb ... 127s Unpacking libgssapi-krb5-2:ppc64el (1.21.3-4) over (1.21.3-3) ... 127s Preparing to unpack .../04-libkrb5-3_1.21.3-4_ppc64el.deb ... 127s Unpacking libkrb5-3:ppc64el (1.21.3-4) over (1.21.3-3) ... 127s Preparing to unpack .../05-libkrb5support0_1.21.3-4_ppc64el.deb ... 127s Unpacking libkrb5support0:ppc64el (1.21.3-4) over (1.21.3-3) ... 127s Preparing to unpack .../06-libk5crypto3_1.21.3-4_ppc64el.deb ... 127s Unpacking libk5crypto3:ppc64el (1.21.3-4) over (1.21.3-3) ... 127s Preparing to unpack .../07-ucf_3.0048_all.deb ... 127s Unpacking ucf (3.0048) over (3.0046) ... 127s Preparing to unpack .../08-ufw_0.36.2-9_all.deb ... 127s Unpacking ufw (0.36.2-9) over (0.36.2-8) ... 127s Preparing to unpack .../09-libclang-cpp18_1%3a18.1.8-15_ppc64el.deb ... 127s Unpacking libclang-cpp18 (1:18.1.8-15) over (1:18.1.8-13) ... 128s Preparing to unpack .../10-libllvm18_1%3a18.1.8-15_ppc64el.deb ... 128s Unpacking libllvm18:ppc64el (1:18.1.8-15) over (1:18.1.8-13) ... 129s Preparing to unpack .../11-python3-openssl_25.0.0-1_all.deb ... 129s Unpacking python3-openssl (25.0.0-1) over (24.3.0-1) ... 129s Preparing to unpack .../12-python3-urllib3_2.3.0-1_all.deb ... 129s Unpacking python3-urllib3 (2.3.0-1) over (2.0.7-2ubuntu0.1) ... 129s Setting up python3-openssl (25.0.0-1) ... 130s Setting up krb5-locales (1.21.3-4) ... 130s Setting up libkrb5support0:ppc64el (1.21.3-4) ... 130s Setting up ca-certificates (20241223) ... 133s Updating certificates in /etc/ssl/certs... 135s rehash: warning: skipping ca-certificates.crt, it does not contain exactly one certificate or CRL 135s 7 added, 1 removed; done. 135s Setting up ucf (3.0048) ... 135s Setting up libk5crypto3:ppc64el (1.21.3-4) ... 135s Setting up python3-urllib3 (2.3.0-1) ... 136s Setting up libkrb5-3:ppc64el (1.21.3-4) ... 136s Setting up rsync (3.3.0+ds1-4) ... 137s rsync.service is a disabled or a static unit not running, not starting it. 137s Setting up libllvm18:ppc64el (1:18.1.8-15) ... 137s Setting up ufw (0.36.2-9) ... 138s Setting up libgssapi-krb5-2:ppc64el (1.21.3-4) ... 138s Setting up libclang-cpp18 (1:18.1.8-15) ... 138s Processing triggers for rsyslog (8.2406.0-1ubuntu2) ... 139s Processing triggers for man-db (2.13.0-1) ... 141s Processing triggers for libc-bin (2.40-4ubuntu1) ... 141s Processing triggers for ca-certificates (20241223) ... 141s Updating certificates in /etc/ssl/certs... 142s 0 added, 0 removed; done. 142s Running hooks in /etc/ca-certificates/update.d... 142s done. 142s Reading package lists... 143s Building dependency tree... 143s Reading state information... 143s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 144s autopkgtest [22:00:30]: upgrading testbed (apt dist-upgrade and autopurge) 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 145s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 145s Starting 2 pkgProblemResolver with broken count: 0 145s Done 146s Entering ResolveByKeep 146s 147s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 148s Starting pkgProblemResolver with broken count: 0 148s Starting 2 pkgProblemResolver with broken count: 0 148s Done 149s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 149s autopkgtest [22:00:35]: rebooting testbed after setup commands that affected boot 184s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 198s autopkgtest [22:01:24]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024 201s autopkgtest [22:01:27]: @@@@@@@@@@@@@@@@@@@@ apt-source fastp 204s Get:1 http://ftpmaster.internal/ubuntu plucky/universe fastp 0.23.4+dfsg-1 (dsc) [1993 B] 204s Get:2 http://ftpmaster.internal/ubuntu plucky/universe fastp 0.23.4+dfsg-1 (tar) [83.0 kB] 204s Get:3 http://ftpmaster.internal/ubuntu plucky/universe fastp 0.23.4+dfsg-1 (diff) [8504 B] 204s gpgv: Signature made Tue Jul 11 15:26:05 2023 UTC 204s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 204s gpgv: issuer "tille@debian.org" 204s gpgv: Can't check signature: No public key 204s dpkg-source: warning: cannot verify inline signature for ./fastp_0.23.4+dfsg-1.dsc: no acceptable signature found 204s autopkgtest [22:01:30]: testing package fastp version 0.23.4+dfsg-1 204s autopkgtest [22:01:30]: build not needed 205s autopkgtest [22:01:31]: test run-sample-analysis: preparing testbed 205s Reading package lists... 205s Building dependency tree... 205s Reading state information... 206s Starting pkgProblemResolver with broken count: 0 206s Starting 2 pkgProblemResolver with broken count: 0 206s Done 206s The following NEW packages will be installed: 206s fastp libdeflate0 libisal2 206s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 206s Need to get 336 kB of archives. 206s After this operation, 1042 kB of additional disk space will be used. 206s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.23-1 [63.4 kB] 206s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el libisal2 ppc64el 2.31.1-1 [106 kB] 206s Get:3 http://ftpmaster.internal/ubuntu plucky/universe ppc64el fastp ppc64el 0.23.4+dfsg-1 [167 kB] 207s Fetched 336 kB in 1s (661 kB/s) 207s Selecting previously unselected package libdeflate0:ppc64el. 207s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74054 files and directories currently installed.) 207s Preparing to unpack .../libdeflate0_1.23-1_ppc64el.deb ... 207s Unpacking libdeflate0:ppc64el (1.23-1) ... 207s Selecting previously unselected package libisal2. 207s Preparing to unpack .../libisal2_2.31.1-1_ppc64el.deb ... 207s Unpacking libisal2 (2.31.1-1) ... 207s Selecting previously unselected package fastp. 207s Preparing to unpack .../fastp_0.23.4+dfsg-1_ppc64el.deb ... 207s Unpacking fastp (0.23.4+dfsg-1) ... 207s Setting up libisal2 (2.31.1-1) ... 207s Setting up libdeflate0:ppc64el (1.23-1) ... 207s Setting up fastp (0.23.4+dfsg-1) ... 207s Processing triggers for man-db (2.13.0-1) ... 208s Processing triggers for libc-bin (2.40-4ubuntu1) ... 209s autopkgtest [22:01:35]: test run-sample-analysis: [----------------------- 210s Detecting adapter sequence for read1... 210s No adapter detected for read1 210s 210s Read1 before filtering: 210s total reads: 9 210s total bases: 1208 210s Q20 bases: 1078(89.2384%) 210s Q30 bases: 1005(83.1954%) 210s 210s Read1 after filtering: 210s total reads: 8 210s total bases: 1208 210s Q20 bases: 1078(89.2384%) 210s Q30 bases: 1005(83.1954%) 210s 210s Filtering result: 210s reads passed filter: 8 210s reads failed due to low quality: 0 210s reads failed due to too many N: 0 210s reads failed due to too short: 1 210s reads with adapter trimmed: 0 210s bases trimmed due to adapters: 0 210s 210s Duplication rate (may be overestimated since this is SE data): 55.5556% 210s 210s JSON report: fastp.json 210s HTML report: fastp.html 210s 210s fastp -i R1.fq -o out.R1.fq 210s fastp v0.23.4, time used: 0 seconds 210s Read1 before filtering: 210s total reads: 9 210s total bases: 1208 210s Q20 bases: 1078(89.2384%) 210s Q30 bases: 1005(83.1954%) 210s 210s Read2 before filtering: 210s total reads: 9 210s total bases: 1359 210s Q20 bases: 1100(80.9419%) 210s Q30 bases: 959(70.5666%) 210s 210s Read1 after filtering: 210s total reads: 8 210s total bases: 1208 210s Q20 bases: 1078(89.2384%) 210s Q30 bases: 1005(83.1954%) 210s 210s Read2 after filtering: 210s total reads: 8 210s total bases: 1208 210s Q20 bases: 991(82.0364%) 210s Q30 bases: 874(72.351%) 210s 210s Filtering result: 210s reads passed filter: 16 210s reads failed due to low quality: 0 210s reads failed due to too many N: 0 210s reads failed due to too short: 2 210s reads with adapter trimmed: 0 210s bases trimmed due to adapters: 0 210s 210s Duplication rate: 55.5556% 210s 210s Insert size peak (evaluated by paired-end reads): 187 210s 210s JSON report: fastp.json 210s HTML report: fastp.html 210s 210s fastp -i R1.fq.gz -I R2.fq.gz -o out.R1.fq.gz -O out.R2.fq.gz 210s fastp v0.23.4, time used: 0 seconds 210s Detecting adapter sequence for read1... 210s No adapter detected for read1 210s 210s Read1 before filtering: 210s total reads: 9 210s total bases: 1359 210s Q20 bases: 1100(80.9419%) 210s Q30 bases: 959(70.5666%) 210s 210s Read1 after filtering: 210s total reads: 9 210s total bases: 1287 210s Q20 bases: 1032(80.1865%) 210s Q30 bases: 891(69.2308%) 210s 210s Filtering result: 210s reads passed filter: 9 210s reads failed due to low quality: 0 210s reads failed due to too many N: 0 210s reads failed due to too short: 0 210s reads with adapter trimmed: 0 210s bases trimmed due to adapters: 0 210s 210s Duplication rate (may be overestimated since this is SE data): 66.6667% 210s 210s JSON report: fastp.json 210s HTML report: fastp.html 210s 210s fastp -i R2.fq -o out.R2.fq -U --umi_loc=read1 --umi_len=8 210s fastp v0.23.4, time used: 0 seconds 211s autopkgtest [22:01:37]: test run-sample-analysis: -----------------------] 211s autopkgtest [22:01:37]: test run-sample-analysis: - - - - - - - - - - results - - - - - - - - - - 211s run-sample-analysis PASS 212s autopkgtest [22:01:38]: @@@@@@@@@@@@@@@@@@@@ summary 212s run-sample-analysis PASS 230s nova [W] Using flock in prodstack6-ppc64el 230s Creating nova instance adt-plucky-ppc64el-fastp-20250121-215806-juju-7f2275-prod-proposed-migration-environment-2-5c6b9dfc-3de0-4093-8665-808a09429735 from image adt/ubuntu-plucky-ppc64el-server-20250121.img (UUID f87f2506-cf3c-44cc-897f-aea90a699d57)... 230s nova [W] Timed out waiting for eb34ea54-be00-4176-97de-3e6a131ba495 to get deleted.