0s autopkgtest [22:42:46]: starting date and time: 2025-02-15 22:42:46+0000 0s autopkgtest [22:42:46]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [22:42:46]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.17v1cj75/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc,src:iproute2,src:php-twig,src:postgresql-17,src:postgresql-common,src:roundcube --apt-upgrade diamond-aligner --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu1 iproute2/6.13.0-1ubuntu1 php-twig/3.19.0-1 postgresql-17/17.3-2 postgresql-common/273 roundcube/1.6.10+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-ppc64el-22.secgroup --name adt-plucky-ppc64el-diamond-aligner-20250215-224246-juju-7f2275-prod-proposed-migration-environment-2-ee6baae1-b241-4e32-9a86-3f74b4354750 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 112s autopkgtest [22:44:38]: testbed dpkg architecture: ppc64el 112s autopkgtest [22:44:38]: testbed apt version: 2.9.28 113s autopkgtest [22:44:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup 113s autopkgtest [22:44:39]: testbed release detected to be: None 114s autopkgtest [22:44:40]: updating testbed package index (apt update) 114s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 114s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 115s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 115s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 115s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [828 kB] 116s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.1 kB] 116s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [74.3 kB] 116s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 116s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [165 kB] 116s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted ppc64el Packages [760 B] 116s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [922 kB] 116s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [4228 B] 116s Fetched 2121 kB in 2s (926 kB/s) 117s Reading package lists... 118s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Calculating upgrade... 119s The following packages will be upgraded: 119s dash gcc-14-base libatomic1 libgcc-s1 libstdc++6 libtasn1-6 libxdmcp6 120s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Need to get 1171 kB of archives. 120s After this operation, 15.4 kB of additional disk space will be used. 120s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el dash ppc64el 0.5.12-12ubuntu1 [114 kB] 120s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libatomic1 ppc64el 14.2.0-17ubuntu1 [10.7 kB] 120s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14-base ppc64el 14.2.0-17ubuntu1 [53.6 kB] 120s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libstdc++6 ppc64el 14.2.0-17ubuntu1 [886 kB] 120s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgcc-s1 ppc64el 14.2.0-17ubuntu1 [39.2 kB] 121s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtasn1-6 ppc64el 4.20.0-2 [55.9 kB] 121s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxdmcp6 ppc64el 1:1.1.5-1 [11.6 kB] 121s Preconfiguring packages ... 121s Fetched 1171 kB in 1s (1053 kB/s) 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106311 files and directories currently installed.) 122s Preparing to unpack .../dash_0.5.12-12ubuntu1_ppc64el.deb ... 122s Unpacking dash (0.5.12-12ubuntu1) over (0.5.12-9ubuntu1) ... 122s Setting up dash (0.5.12-12ubuntu1) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106311 files and directories currently installed.) 122s Preparing to unpack .../libatomic1_14.2.0-17ubuntu1_ppc64el.deb ... 122s Unpacking libatomic1:ppc64el (14.2.0-17ubuntu1) over (14.2.0-16ubuntu1) ... 122s Preparing to unpack .../gcc-14-base_14.2.0-17ubuntu1_ppc64el.deb ... 122s Unpacking gcc-14-base:ppc64el (14.2.0-17ubuntu1) over (14.2.0-16ubuntu1) ... 122s Setting up gcc-14-base:ppc64el (14.2.0-17ubuntu1) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106311 files and directories currently installed.) 122s Preparing to unpack .../libstdc++6_14.2.0-17ubuntu1_ppc64el.deb ... 122s Unpacking libstdc++6:ppc64el (14.2.0-17ubuntu1) over (14.2.0-16ubuntu1) ... 122s Setting up libstdc++6:ppc64el (14.2.0-17ubuntu1) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106311 files and directories currently installed.) 122s Preparing to unpack .../libgcc-s1_14.2.0-17ubuntu1_ppc64el.deb ... 122s Unpacking libgcc-s1:ppc64el (14.2.0-17ubuntu1) over (14.2.0-16ubuntu1) ... 122s Setting up libgcc-s1:ppc64el (14.2.0-17ubuntu1) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106311 files and directories currently installed.) 122s Preparing to unpack .../libtasn1-6_4.20.0-2_ppc64el.deb ... 122s Unpacking libtasn1-6:ppc64el (4.20.0-2) over (4.19.0-3build1) ... 122s Preparing to unpack .../libxdmcp6_1%3a1.1.5-1_ppc64el.deb ... 122s Unpacking libxdmcp6:ppc64el (1:1.1.5-1) over (1:1.1.3-0ubuntu6) ... 122s Setting up libxdmcp6:ppc64el (1:1.1.5-1) ... 122s Setting up libatomic1:ppc64el (14.2.0-17ubuntu1) ... 122s Setting up libtasn1-6:ppc64el (4.20.0-2) ... 122s Processing triggers for libc-bin (2.40-4ubuntu1) ... 122s Processing triggers for man-db (2.13.0-1) ... 123s Processing triggers for debianutils (5.21) ... 123s Reading package lists... 123s Building dependency tree... 123s Reading state information... 124s 0 upgraded, 0 newly installed, 0 to remove and 6 not upgraded. 124s autopkgtest [22:44:50]: upgrading testbed (apt dist-upgrade and autopurge) 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 125s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 125s Starting 2 pkgProblemResolver with broken count: 0 125s Done 125s Entering ResolveByKeep 125s 125s The following packages will be upgraded: 125s iproute2 libc-bin libc-dev-bin libc6 libc6-dev locales 126s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s Need to get 11.7 MB of archives. 126s After this operation, 358 kB of additional disk space will be used. 126s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libc-dev-bin ppc64el 2.41-1ubuntu1 [25.3 kB] 126s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libc6-dev ppc64el 2.41-1ubuntu1 [2046 kB] 127s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el locales all 2.41-1ubuntu1 [4246 kB] 128s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libc6 ppc64el 2.41-1ubuntu1 [3243 kB] 129s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libc-bin ppc64el 2.41-1ubuntu1 [742 kB] 129s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el iproute2 ppc64el 6.13.0-1ubuntu1 [1419 kB] 130s Preconfiguring packages ... 130s Fetched 11.7 MB in 4s (3090 kB/s) 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106311 files and directories currently installed.) 130s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu1_ppc64el.deb ... 130s Unpacking libc-dev-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 130s Preparing to unpack .../libc6-dev_2.41-1ubuntu1_ppc64el.deb ... 130s Unpacking libc6-dev:ppc64el (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 130s Preparing to unpack .../locales_2.41-1ubuntu1_all.deb ... 130s Unpacking locales (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 130s Preparing to unpack .../libc6_2.41-1ubuntu1_ppc64el.deb ... 130s Checking for services that may need to be restarted... 130s Checking init scripts... 130s Checking for services that may need to be restarted... 130s Checking init scripts... 131s Stopping some services possibly affected by the upgrade (will be restarted later): 131s cron: stopping...done. 131s 131s Unpacking libc6:ppc64el (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 131s Setting up libc6:ppc64el (2.41-1ubuntu1) ... 131s Checking for services that may need to be restarted... 131s Checking init scripts... 131s Restarting services possibly affected by the upgrade: 131s cron: restarting...done. 131s 131s Services restarted successfully. 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106312 files and directories currently installed.) 131s Preparing to unpack .../libc-bin_2.41-1ubuntu1_ppc64el.deb ... 131s Unpacking libc-bin (2.41-1ubuntu1) over (2.40-4ubuntu1) ... 131s Setting up libc-bin (2.41-1ubuntu1) ... 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106312 files and directories currently installed.) 131s Preparing to unpack .../iproute2_6.13.0-1ubuntu1_ppc64el.deb ... 132s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ... 132s Setting up iproute2 (6.13.0-1ubuntu1) ... 132s Setting up locales (2.41-1ubuntu1) ... 132s Installing new version of config file /etc/locale.alias ... 133s Generating locales (this might take a while)... 134s en_US.UTF-8... done 134s Generation complete. 134s Setting up libc-dev-bin (2.41-1ubuntu1) ... 134s Setting up libc6-dev:ppc64el (2.41-1ubuntu1) ... 134s Processing triggers for man-db (2.13.0-1) ... 136s Processing triggers for systemd (257.2-3ubuntu1) ... 137s Reading package lists... 137s Building dependency tree... 137s Reading state information... 137s Starting pkgProblemResolver with broken count: 0 137s Starting 2 pkgProblemResolver with broken count: 0 137s Done 138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 141s autopkgtest [22:45:07]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP Tue Feb 4 16:32:08 UTC 2025 141s autopkgtest [22:45:07]: @@@@@@@@@@@@@@@@@@@@ apt-source diamond-aligner 144s Get:1 http://ftpmaster.internal/ubuntu plucky/universe diamond-aligner 2.1.9-1 (dsc) [2199 B] 144s Get:2 http://ftpmaster.internal/ubuntu plucky/universe diamond-aligner 2.1.9-1 (tar) [4310 kB] 144s Get:3 http://ftpmaster.internal/ubuntu plucky/universe diamond-aligner 2.1.9-1 (diff) [129 kB] 144s gpgv: Signature made Wed Feb 7 10:24:42 2024 UTC 144s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 144s gpgv: issuer "tille@debian.org" 144s gpgv: Can't check signature: No public key 144s dpkg-source: warning: cannot verify inline signature for ./diamond-aligner_2.1.9-1.dsc: no acceptable signature found 145s autopkgtest [22:45:11]: testing package diamond-aligner version 2.1.9-1 145s autopkgtest [22:45:11]: build not needed 146s autopkgtest [22:45:12]: test run-unit-test: preparing testbed 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 147s Starting pkgProblemResolver with broken count: 0 147s Starting 2 pkgProblemResolver with broken count: 0 147s Done 148s The following NEW packages will be installed: 148s diamond-aligner 148s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 148s Need to get 1959 kB of archives. 148s After this operation, 5370 kB of additional disk space will be used. 148s Get:1 http://ftpmaster.internal/ubuntu plucky/universe ppc64el diamond-aligner ppc64el 2.1.9-1 [1959 kB] 149s Fetched 1959 kB in 1s (2424 kB/s) 149s Selecting previously unselected package diamond-aligner. 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 106313 files and directories currently installed.) 149s Preparing to unpack .../diamond-aligner_2.1.9-1_ppc64el.deb ... 149s Unpacking diamond-aligner (2.1.9-1) ... 149s Setting up diamond-aligner (2.1.9-1) ... 149s Processing triggers for man-db (2.13.0-1) ... 150s autopkgtest [22:45:16]: test run-unit-test: [----------------------- 151s + mktemp -d 151s + TESTDIR=/tmp/tmp.1tjiyxLyuA 151s + diamond blastp --threads 1 --db test/C.faa.diamond --query test/E.faa --out /tmp/tmp.1tjiyxLyuA/E.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive 151s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 151s Documentation, support and updates available at http://www.diamondsearch.org 151s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 151s 151s #CPU threads: 1 151s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 151s Temporary directory: /tmp/tmp.1tjiyxLyuA 151s #Target sequences to report alignments for: 25 151s Opening the database... [0s] 151s Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) 151s Block size = 2000000000 151s Opening the input file... [0s] 151s Opening the output file... [0s] 151s Loading query sequences... [0s] 151s Masking queries... [0.02s] 151s Algorithm: Double-indexed 151s Building query histograms... [0.012s] 151s Seeking in database... [0s] 151s Loading reference sequences... [0s] 151s Masking reference... [0.016s] 151s Initializing temporary storage... [0s] 151s Building reference histograms... [0.013s] 151s Allocating buffers... [0s] 151s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0.001s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0.001s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.003s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.003s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0.003s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.004s] 151s Computing hash join... [0.002s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.003s] 151s Computing hash join... [0.002s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0.001s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 151s Building reference seed array... [0.003s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0.001s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 151s Building reference seed array... [0.003s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.007s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 151s Building reference seed array... [0.005s] 151s Building query seed array... [0.003s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 151s Building reference seed array... [0.004s] 151s Building query seed array... [0.004s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.003s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 151s Building reference seed array... [0.003s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.003s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0.001s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 151s Building reference seed array... [0.003s] 151s Building query seed array... [0.005s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0.007s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 151s Building reference seed array... [0.004s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.003s] 151s Computing hash join... [0.001s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0.001s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 151s Building reference seed array... [0.003s] 151s Building query seed array... [0.003s] 151s Computing hash join... [0.001s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.003s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0.001s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 151s Building reference seed array... [0.003s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.002s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 151s Building reference seed array... [0.003s] 151s Building query seed array... [0.004s] 151s Computing hash join... [0.005s] 151s Masking low complexity seeds... [0.006s] 151s Searching alignments... [0.003s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 151s Building reference seed array... [0.004s] 151s Building query seed array... [0.003s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.003s] 151s Computing hash join... [0.001s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0.001s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 151s Building reference seed array... [0.003s] 151s Building query seed array... [0.003s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 151s Building reference seed array... [0.002s] 151s Building query seed array... [0.003s] 151s Computing hash join... [0s] 151s Masking low complexity seeds... [0s] 151s Searching alignments... [0s] 151s Deallocating memory... [0s] 151s Deallocating buffers... [0s] 151s Clearing query masking... [0s] 151s Computing alignments... Loading trace points... [0.007s] 151s Sorting trace points... [0s] 152s Computing alignments... [0.156s] 152s Deallocating buffers... [0s] 152s Loading trace points... [0s] 152s [0.164s] 152s Deallocating reference... [0s] 152s Loading reference sequences... [0s] 152s Deallocating buffers... [0s] 152s Deallocating queries... [0s] 152s Loading query sequences... [0s] 152s Closing the input file... [0s] 152s Closing the output file... [0s] 152s Closing the database... [0s] 152s Cleaning up... [0s] 152s Total time = 0.846s 152s Reported 77 pairwise alignments, 77 HSPs. 152s 72 queries aligned. 152s + diamond blastp --threads 1 --db test/E.faa.diamond --query test/C.faa --out /tmp/tmp.1tjiyxLyuA/C.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive 152s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 152s Documentation, support and updates available at http://www.diamondsearch.org 152s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 152s 152s #CPU threads: 1 152s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 152s Temporary directory: /tmp/tmp.1tjiyxLyuA 152s #Target sequences to report alignments for: 25 152s Opening the database... [0s] 152s Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) 152s Block size = 2000000000 152s Opening the input file... [0s] 152s Opening the output file... [0s] 152s Loading query sequences... [0s] 152s Masking queries... [0.027s] 152s Algorithm: Double-indexed 152s Building query histograms... [0.022s] 152s Seeking in database... [0s] 152s Loading reference sequences... [0s] 152s Masking reference... [0.019s] 152s Initializing temporary storage... [0s] 152s Building reference histograms... [0.012s] 152s Allocating buffers... [0s] 152s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.004s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.003s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0.001s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.003s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.003s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 152s Building reference seed array... [0.004s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 152s Building reference seed array... [0.003s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 152s Building reference seed array... [0.005s] 152s Building query seed array... [0.005s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0.001s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 152s Building reference seed array... [0.008s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0.003s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0.001s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 152s Building reference seed array... [0.005s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 152s Building reference seed array... [0.003s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0.001s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.003s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 152s Building reference seed array... [0.003s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 152s Building reference seed array... [0.004s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.003s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.003s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0.001s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.003s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 152s Building reference seed array... [0.003s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 152s Building reference seed array... [0.003s] 152s Building query seed array... [0.004s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 152s Building reference seed array... [0.004s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 152s Building reference seed array... [0.003s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 152s Building reference seed array... [0.003s] 152s Building query seed array... [0.006s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 152s Building reference seed array... [0.003s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.002s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Deallocating buffers... [0s] 152s Clearing query masking... [0s] 152s Computing alignments... Loading trace points... [0.002s] 152s Sorting trace points... [0s] 152s Computing alignments... [0.102s] 152s Deallocating buffers... [0s] 152s Loading trace points... [0s] 152s [0.105s] 152s Deallocating reference... [0s] 152s Loading reference sequences... [0s] 152s Deallocating buffers... [0s] 152s Deallocating queries... [0s] 152s Loading query sequences... [0s] 152s Closing the input file... [0s] 152s Closing the output file... [0s] 152s Closing the database... [0s] 152s Cleaning up... [0s] 152s Total time = 0.755s 152s Reported 41 pairwise alignments, 41 HSPs. 152s 15 queries aligned. 152s + diamond blastp --threads 1 --db test/C.faa.diamond --query test/L.faa --out /tmp/tmp.1tjiyxLyuA/L.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive 152s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 152s Documentation, support and updates available at http://www.diamondsearch.org 152s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 152s 152s #CPU threads: 1 152s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 152s Temporary directory: /tmp/tmp.1tjiyxLyuA 152s #Target sequences to report alignments for: 25 152s Opening the database... [0s] 152s Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) 152s Block size = 2000000000 152s Opening the input file... [0s] 152s Opening the output file... [0s] 152s Loading query sequences... [0s] 152s Masking queries... [0.014s] 152s Algorithm: Double-indexed 152s Building query histograms... [0.005s] 152s Seeking in database... [0s] 152s Loading reference sequences... [0s] 152s Masking reference... [0.015s] 152s Initializing temporary storage... [0s] 152s Building reference histograms... [0.01s] 152s Allocating buffers... [0s] 152s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.001s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.001s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.001s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.001s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.001s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.001s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.001s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.001s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.001s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.001s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.001s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.001s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.001s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.001s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.001s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.001s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.001s] 152s Computing hash join... [0s] 152s Masking low complexity seeds... [0s] 152s Searching alignments... [0s] 152s Deallocating memory... [0s] 152s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 152s Building reference seed array... [0.002s] 152s Building query seed array... [0.001s] 153s Computing hash join... [0.001s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0.002s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 153s Building reference seed array... [0.003s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 153s Building reference seed array... [0.003s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 153s Building reference seed array... [0.004s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 153s Building reference seed array... [0.003s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.003s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.004s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 153s Building reference seed array... [0.003s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 153s Building reference seed array... [0.003s] 153s Building query seed array... [0.001s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Deallocating buffers... [0s] 153s Clearing query masking... [0s] 153s Computing alignments... Loading trace points... [0.003s] 153s Sorting trace points... [0s] 153s Computing alignments... [0.113s] 153s Deallocating buffers... [0s] 153s Loading trace points... [0s] 153s [0.118s] 153s Deallocating reference... [0s] 153s Loading reference sequences... [0s] 153s Deallocating buffers... [0s] 153s Deallocating queries... [0s] 153s Loading query sequences... [0s] 153s Closing the input file... [0s] 153s Closing the output file... [0s] 153s Closing the database... [0s] 153s Cleaning up... [0s] 153s Total time = 0.592s 153s Reported 64 pairwise alignments, 64 HSPs. 153s 33 queries aligned. 153s + diamond blastp --threads 1 --db test/L.faa.diamond --query test/C.faa --out /tmp/tmp.1tjiyxLyuA/C.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive 153s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 153s Documentation, support and updates available at http://www.diamondsearch.org 153s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 153s 153s #CPU threads: 1 153s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 153s Temporary directory: /tmp/tmp.1tjiyxLyuA 153s #Target sequences to report alignments for: 25 153s Opening the database... [0s] 153s Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) 153s Block size = 2000000000 153s Opening the input file... [0s] 153s Opening the output file... [0s] 153s Loading query sequences... [0s] 153s Masking queries... [0.02s] 153s Algorithm: Double-indexed 153s Building query histograms... [0.011s] 153s Seeking in database... [0s] 153s Loading reference sequences... [0s] 153s Masking reference... [0.008s] 153s Initializing temporary storage... [0s] 153s Building reference histograms... [0.007s] 153s Allocating buffers... [0s] 153s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0.001s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.003s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.006s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0.003s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.003s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.004s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.003s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 153s Building reference seed array... [0.002s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 153s Building reference seed array... [0.001s] 153s Building query seed array... [0.002s] 153s Computing hash join... [0s] 153s Masking low complexity seeds... [0s] 153s Searching alignments... [0s] 153s Deallocating memory... [0s] 153s Deallocating buffers... [0s] 153s Clearing query masking... [0s] 153s Computing alignments... Loading trace points... [0.004s] 153s Sorting trace points... [0s] 154s Computing alignments... [0.155s] 154s Deallocating buffers... [0s] 154s Loading trace points... [0s] 154s [0.16s] 154s Deallocating reference... [0s] 154s Loading reference sequences... [0s] 154s Deallocating buffers... [0s] 154s Deallocating queries... [0s] 154s Loading query sequences... [0s] 154s Closing the input file... [0s] 154s Closing the output file... [0s] 154s Closing the database... [0s] 154s Cleaning up... [0s] 154s Total time = 0.622s 154s Reported 133 pairwise alignments, 133 HSPs. 154s 109 queries aligned. 154s + diamond blastp --threads 1 --db test/C.faa.diamond --query test/M.faa --out /tmp/tmp.1tjiyxLyuA/M.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive 154s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 154s Documentation, support and updates available at http://www.diamondsearch.org 154s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 154s 154s #CPU threads: 1 154s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 154s Temporary directory: /tmp/tmp.1tjiyxLyuA 154s #Target sequences to report alignments for: 25 154s Opening the database... [0s] 154s Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) 154s Block size = 2000000000 154s Opening the input file... [0s] 154s Opening the output file... [0s] 154s Loading query sequences... [0s] 154s Masking queries... [0.014s] 154s Algorithm: Double-indexed 154s Building query histograms... [0.006s] 154s Seeking in database... [0s] 154s Loading reference sequences... [0s] 154s Masking reference... [0.018s] 154s Initializing temporary storage... [0.001s] 154s Building reference histograms... [0.012s] 154s Allocating buffers... [0s] 154s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 154s Building reference seed array... [0.003s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0.001s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0.001s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 154s Building reference seed array... [0.003s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0.005s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0.002s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 154s Building reference seed array... [0.003s] 154s Building query seed array... [0.006s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0.001s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.003s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 154s Building reference seed array... [0.003s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 154s Building reference seed array... [0.003s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 154s Building reference seed array... [0.003s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 154s Building reference seed array... [0.003s] 154s Building query seed array... [0.001s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.003s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Deallocating buffers... [0s] 154s Clearing query masking... [0s] 154s Computing alignments... Loading trace points... [0.002s] 154s Sorting trace points... [0s] 154s Computing alignments... [0.109s] 154s Deallocating buffers... [0s] 154s Loading trace points... [0s] 154s [0.113s] 154s Deallocating reference... [0s] 154s Loading reference sequences... [0s] 154s Deallocating buffers... [0s] 154s Deallocating queries... [0s] 154s Loading query sequences... [0s] 154s Closing the input file... [0s] 154s Closing the output file... [0s] 154s Closing the database... [0s] 154s Cleaning up... [0s] 154s Total time = 0.604s 154s Reported 62 pairwise alignments, 62 HSPs. 154s 33 queries aligned. 154s + diamond blastp --threads 1 --db test/M.faa.diamond --query test/C.faa --out /tmp/tmp.1tjiyxLyuA/C.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive 154s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 154s Documentation, support and updates available at http://www.diamondsearch.org 154s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 154s 154s #CPU threads: 1 154s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 154s Temporary directory: /tmp/tmp.1tjiyxLyuA 154s #Target sequences to report alignments for: 25 154s Opening the database... [0s] 154s Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) 154s Block size = 2000000000 154s Opening the input file... [0s] 154s Opening the output file... [0s] 154s Loading query sequences... [0s] 154s Masking queries... [0.021s] 154s Algorithm: Double-indexed 154s Building query histograms... [0.013s] 154s Seeking in database... [0s] 154s Loading reference sequences... [0s] 154s Masking reference... [0.009s] 154s Initializing temporary storage... [0s] 154s Building reference histograms... [0.007s] 154s Allocating buffers... [0s] 154s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.003s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0.001s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.003s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 154s Building reference seed array... [0.001s] 154s Building query seed array... [0.003s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 154s Building reference seed array... [0.001s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 154s Building reference seed array... [0.001s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 154s Building reference seed array... [0.001s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 154s Building reference seed array... [0.001s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 154s Building reference seed array... [0.001s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 154s Building reference seed array... [0.001s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 154s Building reference seed array... [0.001s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 154s Building reference seed array... [0.001s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 154s Building reference seed array... [0.001s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 154s Building reference seed array... [0.001s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 154s Building reference seed array... [0.001s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 154s Building reference seed array... [0.003s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 154s Building reference seed array... [0.005s] 154s Building query seed array... [0.005s] 154s Computing hash join... [0.001s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 154s Building reference seed array... [0.001s] 154s Building query seed array... [0.003s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 154s Building reference seed array... [0.001s] 154s Building query seed array... [0.003s] 154s Computing hash join... [0.001s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0.004s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 154s Building reference seed array... [0.001s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0.001s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0.001s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 154s Building reference seed array... [0.001s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 154s Building reference seed array... [0.001s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0.004s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 154s Building reference seed array... [0.005s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 154s Building reference seed array... [0.003s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 154s Building reference seed array... [0.001s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0.007s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 154s Building reference seed array... [0.001s] 154s Building query seed array... [0.009s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 154s Building reference seed array... [0.002s] 154s Building query seed array... [0.004s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 154s Building reference seed array... [0.001s] 154s Building query seed array... [0.002s] 154s Computing hash join... [0s] 154s Masking low complexity seeds... [0s] 154s Searching alignments... [0s] 154s Deallocating memory... [0s] 154s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 154s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0.001s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.003s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.003s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.003s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.003s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.003s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Deallocating buffers... [0s] 155s Clearing query masking... [0s] 155s Computing alignments... Loading trace points... [0.004s] 155s Sorting trace points... [0s] 155s Computing alignments... [0.159s] 155s Deallocating buffers... [0s] 155s Loading trace points... [0s] 155s [0.164s] 155s Deallocating reference... [0s] 155s Loading reference sequences... [0s] 155s Deallocating buffers... [0s] 155s Deallocating queries... [0s] 155s Loading query sequences... [0s] 155s Closing the input file... [0s] 155s Closing the output file... [0s] 155s Closing the database... [0s] 155s Cleaning up... [0s] 155s Total time = 0.707s 155s Reported 131 pairwise alignments, 131 HSPs. 155s 109 queries aligned. 155s + diamond blastp --ignore-warnings --threads 1 --db test/C.faa.diamond --query test/C2.faa --out /tmp/tmp.1tjiyxLyuA/C2.faa.vs.C.faa.diamond -e 1e-05 --outfmt 6 --sensitive 155s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 155s Documentation, support and updates available at http://www.diamondsearch.org 155s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 155s 155s #CPU threads: 1 155s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 155s Temporary directory: /tmp/tmp.1tjiyxLyuA 155s #Target sequences to report alignments for: 25 155s Opening the database... [0s] 155s Database: test/C.faa.diamond (type: Diamond database, sequences: 109, letters: 51213) 155s Block size = 2000000000 155s Opening the input file... [0s] 155s Opening the output file... [0s] 155s Loading query sequences... [0s] 155s Masking queries... [0.001s] 155s Algorithm: Double-indexed 155s Building query histograms... [0s] 155s Seeking in database... [0s] 155s Loading reference sequences... [0s] 155s Masking reference... [0.016s] 155s Initializing temporary storage... [0s] 155s Building reference histograms... [0.017s] 155s Allocating buffers... [0s] 155s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 155s Building reference seed array... [0.003s] 155s Building query seed array... [0.001s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 155s Building reference seed array... [0.005s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0.002s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 155s Building reference seed array... [0.006s] 155s Building query seed array... [0.001s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0.017s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 155s Building reference seed array... [0.003s] 155s Building query seed array... [0.001s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 155s Building reference seed array... [0.005s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 155s Building reference seed array... [0.003s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 155s Building reference seed array... [0.003s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 155s Building reference seed array... [0.003s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0.003s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0.001s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 155s Building reference seed array... [0.004s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 155s Building reference seed array... [0.003s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0.001s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0.001s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0.003s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0.001s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 155s Building reference seed array... [0.003s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 155s Building reference seed array... [0.004s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 155s Building reference seed array... [0.004s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0.001s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 155s Building reference seed array... [0.004s] 155s Building query seed array... [0s] 155s Computing hash join... [0.004s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0.001s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 155s Building reference seed array... [0.005s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 155s Building reference seed array... [0.004s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 155s Building reference seed array... [0.01s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 155s Building reference seed array... [0.005s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0.001s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0.003s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 155s Building reference seed array... [0.005s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0.001s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 155s Building reference seed array... [0.002s] 155s Building query seed array... [0s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Deallocating buffers... [0s] 155s Clearing query masking... [0s] 155s Computing alignments... Loading trace points... [0.001s] 155s Sorting trace points... [0s] 155s Computing alignments... [0.001s] 155s Deallocating buffers... [0s] 155s Loading trace points... [0s] 155s [0.003s] 155s Deallocating reference... [0s] 155s Loading reference sequences... [0s] 155s Deallocating buffers... [0s] 155s Deallocating queries... [0s] 155s Loading query sequences... [0s] 155s Closing the input file... [0s] 155s Closing the output file... [0s] 155s Closing the database... [0s] 155s Cleaning up... [0s] 155s Total time = 0.471s 155s Reported 1 pairwise alignments, 1 HSPs. 155s 1 queries aligned. 155s + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/C.faa --out /tmp/tmp.1tjiyxLyuA/C.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive 155s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 155s Documentation, support and updates available at http://www.diamondsearch.org 155s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 155s 155s #CPU threads: 1 155s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 155s Temporary directory: /tmp/tmp.1tjiyxLyuA 155s #Target sequences to report alignments for: 25 155s Opening the database... [0s] 155s Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) 155s Block size = 2000000000 155s Opening the input file... [0s] 155s Opening the output file... [0s] 155s Loading query sequences... [0s] 155s Masking queries... [0.022s] 155s Algorithm: Double-indexed 155s Building query histograms... [0.011s] 155s Seeking in database... [0s] 155s Loading reference sequences... [0s] 155s Masking reference... [0s] 155s Initializing temporary storage... [0s] 155s Building reference histograms... [0.003s] 155s Allocating buffers... [0s] 155s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 155s Building reference seed array... [0s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 155s Building reference seed array... [0s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 155s Building reference seed array... [0s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 155s Building reference seed array... [0s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 155s Building reference seed array... [0s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 155s Building reference seed array... [0s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 155s Building reference seed array... [0s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 155s Building reference seed array... [0s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 155s Building reference seed array... [0s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 155s Building reference seed array... [0s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 155s Building reference seed array... [0s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 155s Building reference seed array... [0s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 155s Building reference seed array... [0s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 155s Building reference seed array... [0s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 155s Building reference seed array... [0s] 155s Building query seed array... [0.002s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 155s Building reference seed array... [0.001s] 155s Building query seed array... [0.008s] 155s Computing hash join... [0s] 155s Masking low complexity seeds... [0s] 155s Searching alignments... [0s] 155s Deallocating memory... [0s] 155s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 155s Building reference seed array... [0s] 156s Building query seed array... [0.003s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 156s Building reference seed array... [0.003s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.003s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.003s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.004s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0.001s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.003s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 156s Building reference seed array... [0s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Deallocating buffers... [0s] 156s Clearing query masking... [0s] 156s Computing alignments... Loading trace points... [0.001s] 156s Sorting trace points... [0s] 156s Computing alignments... [0.001s] 156s Deallocating buffers... [0s] 156s Loading trace points... [0s] 156s [0.003s] 156s Deallocating reference... [0s] 156s Loading reference sequences... [0s] 156s Deallocating buffers... [0s] 156s Deallocating queries... [0s] 156s Loading query sequences... [0s] 156s Closing the input file... [0s] 156s Closing the output file... [0s] 156s Closing the database... [0s] 156s Cleaning up... [0s] 156s Total time = 0.397s 156s Reported 1 pairwise alignments, 1 HSPs. 156s 1 queries aligned. 156s + diamond blastp --threads 1 --db test/E.faa.diamond --query test/L.faa --out /tmp/tmp.1tjiyxLyuA/L.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive 156s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 156s Documentation, support and updates available at http://www.diamondsearch.org 156s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 156s 156s #CPU threads: 1 156s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 156s Temporary directory: /tmp/tmp.1tjiyxLyuA 156s #Target sequences to report alignments for: 25 156s Opening the database... [0s] 156s Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) 156s Block size = 2000000000 156s Opening the input file... [0s] 156s Opening the output file... [0s] 156s Loading query sequences... [0s] 156s Masking queries... [0.015s] 156s Algorithm: Double-indexed 156s Building query histograms... [0.005s] 156s Seeking in database... [0s] 156s Loading reference sequences... [0s] 156s Masking reference... [0.017s] 156s Initializing temporary storage... [0s] 156s Building reference histograms... [0.013s] 156s Allocating buffers... [0s] 156s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 156s Building reference seed array... [0.004s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0.001s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 156s Building reference seed array... [0.004s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0.001s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0.001s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0.001s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 156s Building reference seed array... [0.003s] 156s Building query seed array... [0.004s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0.001s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 156s Building reference seed array... [0.003s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0.001s] 156s Searching alignments... [0.008s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 156s Building reference seed array... [0.003s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0.001s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 156s Building reference seed array... [0.004s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0.001s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 156s Building reference seed array... [0.003s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0.001s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0.002s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 156s Building reference seed array... [0.003s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.003s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0.001s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 156s Building reference seed array... [0.003s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0.001s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 156s Building reference seed array... [0.004s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.002s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0.001s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 156s Building reference seed array... [0.003s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 156s Building reference seed array... [0.002s] 156s Building query seed array... [0.001s] 156s Computing hash join... [0s] 156s Masking low complexity seeds... [0s] 156s Searching alignments... [0s] 156s Deallocating memory... [0s] 156s Deallocating buffers... [0s] 156s Clearing query masking... [0s] 156s Computing alignments... Loading trace points... [0.004s] 156s Sorting trace points... [0s] 158s Computing alignments... [1.385s] 158s Deallocating buffers... [0s] 158s Loading trace points... [0s] 158s [1.391s] 158s Deallocating reference... [0s] 158s Loading reference sequences... [0s] 158s Deallocating buffers... [0s] 158s Deallocating queries... [0s] 158s Loading query sequences... [0s] 158s Closing the input file... [0s] 158s Closing the output file... [0s] 158s Closing the database... [0s] 158s Cleaning up... [0s] 158s Total time = 1.93s 158s Reported 489 pairwise alignments, 489 HSPs. 158s 32 queries aligned. 158s + diamond blastp --threads 1 --db test/L.faa.diamond --query test/E.faa --out /tmp/tmp.1tjiyxLyuA/E.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive 158s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 158s Documentation, support and updates available at http://www.diamondsearch.org 158s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 158s 158s #CPU threads: 1 158s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 158s Temporary directory: /tmp/tmp.1tjiyxLyuA 158s #Target sequences to report alignments for: 25 158s Opening the database... [0s] 158s Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) 158s Block size = 2000000000 158s Opening the input file... [0s] 158s Opening the output file... [0s] 158s Loading query sequences... [0s] 158s Masking queries... [0.025s] 158s Algorithm: Double-indexed 158s Building query histograms... [0.019s] 158s Seeking in database... [0s] 158s Loading reference sequences... [0s] 158s Masking reference... [0.017s] 158s Initializing temporary storage... [0s] 158s Building reference histograms... [0.006s] 158s Allocating buffers... [0s] 158s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.005s] 158s Computing hash join... [0.01s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0.001s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0.004s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0.001s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0.001s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0.001s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.003s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 158s Building reference seed array... [0.002s] 158s Building query seed array... [0.003s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.006s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0.001s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.003s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0.001s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0.001s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0.001s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0.001s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.004s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.004s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.003s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.005s] 158s Computing hash join... [0.001s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0.001s] 158s Masking low complexity seeds... [0.001s] 158s Searching alignments... [0.001s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 158s Building reference seed array... [0.002s] 158s Building query seed array... [0.003s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 158s Building reference seed array... [0.002s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0.002s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 158s Building reference seed array... [0.003s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 158s Building reference seed array... [0.002s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0.002s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 158s Building reference seed array... [0.007s] 158s Building query seed array... [0.004s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.006s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 158s Building reference seed array... [0.003s] 158s Building query seed array... [0.007s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0.001s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 158s Building reference seed array... [0.012s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0.001s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.004s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 158s Building reference seed array... [0.005s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0.001s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 158s Building reference seed array... [0.002s] 158s Building query seed array... [0.003s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 158s Building reference seed array... [0.002s] 158s Building query seed array... [0.003s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 158s Building reference seed array... [0.002s] 158s Building query seed array... [0.006s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.004s] 158s Computing hash join... [0.001s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.003s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0.001s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0.001s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0.001s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 158s Building reference seed array... [0.001s] 158s Building query seed array... [0.002s] 158s Computing hash join... [0s] 158s Masking low complexity seeds... [0s] 158s Searching alignments... [0s] 158s Deallocating memory... [0s] 158s Deallocating buffers... [0s] 158s Clearing query masking... [0s] 158s Computing alignments... Loading trace points... [0.003s] 158s Sorting trace points... [0s] 161s Computing alignments... [2.229s] 161s Deallocating buffers... [0s] 161s Loading trace points... [0s] 161s [2.234s] 161s Deallocating reference... [0s] 161s Loading reference sequences... [0s] 161s Deallocating buffers... [0s] 161s Deallocating queries... [0s] 161s Loading query sequences... [0s] 161s Closing the input file... [0s] 161s Closing the output file... [0s] 161s Closing the database... [0s] 161s Cleaning up... [0s] 161s Total time = 2.886s 161s Reported 1173 pairwise alignments, 1173 HSPs. 161s 72 queries aligned. 161s + diamond blastp --threads 1 --db test/E.faa.diamond --query test/M.faa --out /tmp/tmp.1tjiyxLyuA/M.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive 161s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 161s Documentation, support and updates available at http://www.diamondsearch.org 161s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 161s 161s #CPU threads: 1 161s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 161s Temporary directory: /tmp/tmp.1tjiyxLyuA 161s #Target sequences to report alignments for: 25 161s Opening the database... [0s] 161s Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) 161s Block size = 2000000000 161s Opening the input file... [0s] 161s Opening the output file... [0s] 161s Loading query sequences... [0s] 161s Masking queries... [0.015s] 161s Algorithm: Double-indexed 161s Building query histograms... [0.006s] 161s Seeking in database... [0s] 161s Loading reference sequences... [0s] 161s Masking reference... [0.019s] 161s Initializing temporary storage... [0s] 161s Building reference histograms... [0.015s] 161s Allocating buffers... [0s] 161s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 161s Building reference seed array... [0.003s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 161s Building reference seed array... [0.003s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.008s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0.001s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.003s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0.001s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 161s Building reference seed array... [0.003s] 161s Building query seed array... [0.002s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 161s Building reference seed array... [0.003s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 161s Building reference seed array... [0.003s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 161s Building reference seed array... [0.003s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 161s Building reference seed array... [0.003s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0.002s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 161s Building reference seed array... [0.003s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0.001s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 161s Building reference seed array... [0.004s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0.004s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 161s Building reference seed array... [0.004s] 161s Building query seed array... [0.003s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 161s Building reference seed array... [0.005s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 161s Building reference seed array... [0.003s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 161s Building reference seed array... [0.003s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 161s Building reference seed array... [0.005s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 161s Building reference seed array... [0.003s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 161s Building reference seed array... [0.002s] 161s Building query seed array... [0.001s] 161s Computing hash join... [0s] 161s Masking low complexity seeds... [0s] 161s Searching alignments... [0s] 161s Deallocating memory... [0s] 161s Deallocating buffers... [0s] 161s Clearing query masking... [0s] 161s Computing alignments... Loading trace points... [0.004s] 161s Sorting trace points... [0s] 163s Computing alignments... [1.436s] 163s Deallocating buffers... [0s] 163s Loading trace points... [0s] 163s [1.442s] 163s Deallocating reference... [0s] 163s Loading reference sequences... [0s] 163s Deallocating buffers... [0s] 163s Deallocating queries... [0s] 163s Loading query sequences... [0s] 163s Closing the input file... [0s] 163s Closing the output file... [0s] 163s Closing the database... [0s] 163s Cleaning up... [0s] 163s Total time = 1.969s 163s Reported 489 pairwise alignments, 489 HSPs. 163s 32 queries aligned. 163s + diamond blastp --threads 1 --db test/M.faa.diamond --query test/E.faa --out /tmp/tmp.1tjiyxLyuA/E.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive 163s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 163s Documentation, support and updates available at http://www.diamondsearch.org 163s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 163s 163s #CPU threads: 1 163s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 163s Temporary directory: /tmp/tmp.1tjiyxLyuA 163s #Target sequences to report alignments for: 25 163s Opening the database... [0s] 163s Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) 163s Block size = 2000000000 163s Opening the input file... [0s] 163s Opening the output file... [0s] 163s Loading query sequences... [0s] 163s Masking queries... [0.021s] 163s Algorithm: Double-indexed 163s Building query histograms... [0.012s] 163s Seeking in database... [0s] 163s Loading reference sequences... [0s] 163s Masking reference... [0.012s] 163s Initializing temporary storage... [0.001s] 163s Building reference histograms... [0.007s] 163s Allocating buffers... [0s] 163s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 163s Building reference seed array... [0.002s] 163s Building query seed array... [0.004s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0.001s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 163s Building reference seed array... [0.006s] 163s Building query seed array... [0.003s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.003s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0.001s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.003s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 163s Building reference seed array... [0.002s] 163s Building query seed array... [0.003s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0.001s] 163s Masking low complexity seeds... [0.003s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.003s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.003s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0.001s] 163s Searching alignments... [0.001s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0.001s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0.001s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0.002s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0.001s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0.001s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0.002s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.003s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0.001s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0.001s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0.001s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 163s Building reference seed array... [0.002s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 163s Building reference seed array... [0.002s] 163s Building query seed array... [0.007s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.004s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 163s Building reference seed array... [0.004s] 163s Building query seed array... [0.003s] 163s Computing hash join... [0.003s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.005s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0.001s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 163s Building reference seed array... [0.004s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0.001s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.003s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 163s Building reference seed array... [0.002s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0.002s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0.002s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 163s Building reference seed array... [0.002s] 163s Building query seed array... [0.003s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0.001s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.003s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0.002s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0.005s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.003s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 163s Building reference seed array... [0.001s] 163s Building query seed array... [0.002s] 163s Computing hash join... [0.001s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 163s Building reference seed array... [0.003s] 163s Building query seed array... [0.003s] 163s Computing hash join... [0s] 163s Masking low complexity seeds... [0s] 163s Searching alignments... [0s] 163s Deallocating memory... [0s] 163s Deallocating buffers... [0s] 163s Clearing query masking... [0s] 163s Computing alignments... Loading trace points... [0.005s] 163s Sorting trace points... [0s] 165s Computing alignments... [2.236s] 165s Deallocating buffers... [0s] 165s Loading trace points... [0s] 165s [2.242s] 165s Deallocating reference... [0s] 165s Loading reference sequences... [0s] 165s Deallocating buffers... [0s] 165s Deallocating queries... [0s] 165s Loading query sequences... [0s] 165s Closing the input file... [0s] 165s Closing the output file... [0s] 165s Closing the database... [0s] 165s Cleaning up... [0s] 165s Total time = 2.85s 165s Reported 1173 pairwise alignments, 1173 HSPs. 165s 72 queries aligned. 165s + diamond blastp --ignore-warnings --threads 1 --db test/E.faa.diamond --query test/C2.faa --out /tmp/tmp.1tjiyxLyuA/C2.faa.vs.E.faa.diamond -e 1e-05 --outfmt 6 --sensitive 165s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 165s Documentation, support and updates available at http://www.diamondsearch.org 165s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 165s 165s #CPU threads: 1 165s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 165s Temporary directory: /tmp/tmp.1tjiyxLyuA 165s #Target sequences to report alignments for: 25 165s Opening the database... [0s] 165s Database: test/E.faa.diamond (type: Diamond database, sequences: 72, letters: 54509) 165s Block size = 2000000000 165s Opening the input file... [0s] 165s Opening the output file... [0s] 165s Loading query sequences... [0s] 165s Masking queries... [0.001s] 165s Algorithm: Double-indexed 165s Building query histograms... [0s] 165s Seeking in database... [0s] 165s Loading reference sequences... [0s] 165s Masking reference... [0.017s] 165s Initializing temporary storage... [0s] 165s Building reference histograms... [0.011s] 165s Allocating buffers... [0s] 165s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 165s Building reference seed array... [0.002s] 165s Building query seed array... [0s] 165s Computing hash join... [0s] 165s Masking low complexity seeds... [0s] 165s Searching alignments... [0s] 165s Deallocating memory... [0s] 165s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 165s Building reference seed array... [0.002s] 165s Building query seed array... [0s] 165s Computing hash join... [0s] 165s Masking low complexity seeds... [0s] 165s Searching alignments... [0s] 165s Deallocating memory... [0s] 165s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 165s Building reference seed array... [0.002s] 165s Building query seed array... [0s] 165s Computing hash join... [0s] 165s Masking low complexity seeds... [0s] 165s Searching alignments... [0s] 165s Deallocating memory... [0s] 165s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 165s Building reference seed array... [0.008s] 165s Building query seed array... [0s] 165s Computing hash join... [0s] 165s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 166s Building reference seed array... [0.003s] 166s Building query seed array... [0s] 166s Computing hash join... [0.003s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0.002s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 166s Building reference seed array... [0.004s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 166s Building reference seed array... [0.003s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 166s Building reference seed array... [0.003s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 166s Building reference seed array... [0.003s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 166s Building reference seed array... [0.005s] 166s Building query seed array... [0s] 166s Computing hash join... [0.001s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 166s Building reference seed array... [0.004s] 166s Building query seed array... [0.003s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0.002s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0.002s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0.006s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 166s Building reference seed array... [0.003s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 166s Building reference seed array... [0.003s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0.001s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0.004s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 166s Building reference seed array... [0.004s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0.001s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0.001s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0.004s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 166s Building reference seed array... [0.004s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 166s Building reference seed array... [0.005s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Deallocating buffers... [0s] 166s Clearing query masking... [0s] 166s Computing alignments... Loading trace points... [0.001s] 166s Sorting trace points... [0s] 166s Computing alignments... [0.001s] 166s Deallocating buffers... [0s] 166s Loading trace points... [0s] 166s [0.004s] 166s Deallocating reference... [0s] 166s Loading reference sequences... [0s] 166s Deallocating buffers... [0s] 166s Deallocating queries... [0s] 166s Loading query sequences... [0s] 166s Closing the input file... [0s] 166s Closing the output file... [0s] 166s Closing the database... [0s] 166s Cleaning up... [0s] 166s Total time = 0.448s 166s Reported 1 pairwise alignments, 1 HSPs. 166s 1 queries aligned. 166s + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/E.faa --out /tmp/tmp.1tjiyxLyuA/E.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive 166s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 166s Documentation, support and updates available at http://www.diamondsearch.org 166s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 166s 166s #CPU threads: 1 166s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 166s Temporary directory: /tmp/tmp.1tjiyxLyuA 166s #Target sequences to report alignments for: 25 166s Opening the database... [0s] 166s Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) 166s Block size = 2000000000 166s Opening the input file... [0s] 166s Opening the output file... [0s] 166s Loading query sequences... [0s] 166s Masking queries... [0.021s] 166s Algorithm: Double-indexed 166s Building query histograms... [0.014s] 166s Seeking in database... [0s] 166s Loading reference sequences... [0s] 166s Masking reference... [0s] 166s Initializing temporary storage... [0s] 166s Building reference histograms... [0s] 166s Allocating buffers... [0s] 166s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.003s] 166s Computing hash join... [0.001s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.003s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 166s Building reference seed array... [0.003s] 166s Building query seed array... [0.009s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.005s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.003s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 166s Building reference seed array... [0.001s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0.004s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.003s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 166s Building reference seed array... [0.002s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0.004s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.004s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 166s Building reference seed array... [0.003s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.003s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.003s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0.001s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.003s] 166s Computing hash join... [0.001s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 166s Building reference seed array... [0.001s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0.001s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 166s Building reference seed array... [0.001s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.003s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.005s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.003s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0.001s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0.001s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.005s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 166s Building reference seed array... [0s] 166s Building query seed array... [0.002s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0s] 166s Deallocating memory... [0s] 166s Deallocating buffers... [0s] 166s Clearing query masking... [0s] 166s Computing alignments... Loading trace points... [0.001s] 166s Sorting trace points... [0s] 166s Computing alignments... [0.001s] 166s Deallocating buffers... [0s] 166s Loading trace points... [0s] 166s [0.004s] 166s Deallocating reference... [0s] 166s Loading reference sequences... [0s] 166s Deallocating buffers... [0s] 166s Deallocating queries... [0s] 166s Loading query sequences... [0s] 166s Closing the input file... [0s] 166s Closing the output file... [0s] 166s Closing the database... [0s] 166s Cleaning up... [0s] 166s Total time = 0.456s 166s Reported 1 pairwise alignments, 1 HSPs. 166s 1 queries aligned. 166s + diamond blastp --threads 1 --db test/L.faa.diamond --query test/M.faa --out /tmp/tmp.1tjiyxLyuA/M.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive 166s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 166s Documentation, support and updates available at http://www.diamondsearch.org 166s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 166s 166s #CPU threads: 1 166s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 166s Temporary directory: /tmp/tmp.1tjiyxLyuA 166s #Target sequences to report alignments for: 25 166s Opening the database... [0s] 166s Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) 166s Block size = 2000000000 166s Opening the input file... [0s] 166s Opening the output file... [0s] 166s Loading query sequences... [0s] 166s Masking queries... [0.014s] 166s Algorithm: Double-indexed 166s Building query histograms... [0.006s] 166s Seeking in database... [0s] 166s Loading reference sequences... [0s] 166s Masking reference... [0.01s] 166s Initializing temporary storage... [0s] 166s Building reference histograms... [0.006s] 166s Allocating buffers... [0s] 166s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 166s Building reference seed array... [0.001s] 166s Building query seed array... [0.001s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0.005s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 166s Building reference seed array... [0.005s] 166s Building query seed array... [0.001s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0.004s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 166s Building reference seed array... [0.001s] 166s Building query seed array... [0.001s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0.004s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 166s Building reference seed array... [0.001s] 166s Building query seed array... [0.001s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0.004s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 166s Building reference seed array... [0.001s] 166s Building query seed array... [0.001s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0.004s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 166s Building reference seed array... [0.001s] 166s Building query seed array... [0.001s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0.004s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 166s Building reference seed array... [0.001s] 166s Building query seed array... [0.001s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0.004s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 166s Building reference seed array... [0.001s] 166s Building query seed array... [0.001s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 166s Searching alignments... [0.004s] 166s Deallocating memory... [0s] 166s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 166s Building reference seed array... [0.001s] 166s Building query seed array... [0.001s] 166s Computing hash join... [0s] 166s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0.001s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.002s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 167s Building reference seed array... [0.004s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.007s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.007s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.003s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 167s Building reference seed array... [0.003s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 167s Building reference seed array... [0.003s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 167s Building reference seed array... [0.004s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 167s Building reference seed array... [0.002s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 167s Building reference seed array... [0.002s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 167s Building reference seed array... [0.003s] 167s Building query seed array... [0.002s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.006s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 167s Building reference seed array... [0.016s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.005s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.006s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.003s] 167s Computing hash join... [0.002s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.002s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.004s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 167s Building reference seed array... [0.001s] 167s Building query seed array... [0.001s] 167s Computing hash join... [0s] 167s Masking low complexity seeds... [0s] 167s Searching alignments... [0.005s] 167s Deallocating memory... [0s] 167s Deallocating buffers... [0s] 167s Clearing query masking... [0s] 167s Computing alignments... Loading trace points... [0.004s] 167s Sorting trace points... [0s] 168s Computing alignments... [0.691s] 168s Deallocating buffers... [0s] 168s Loading trace points... [0s] 168s [0.696s] 168s Deallocating reference... [0s] 168s Loading reference sequences... [0s] 168s Deallocating buffers... [0s] 168s Deallocating queries... [0s] 168s Loading query sequences... [0s] 168s Closing the input file... [0s] 168s Closing the output file... [0s] 168s Closing the database... [0s] 168s Cleaning up... [0s] 168s Total time = 1.456s 168s Reported 390 pairwise alignments, 390 HSPs. 168s 39 queries aligned. 168s + diamond blastp --threads 1 --db test/M.faa.diamond --query test/L.faa --out /tmp/tmp.1tjiyxLyuA/L.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive 168s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 168s Documentation, support and updates available at http://www.diamondsearch.org 168s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 168s 168s #CPU threads: 1 168s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 168s Temporary directory: /tmp/tmp.1tjiyxLyuA 168s #Target sequences to report alignments for: 25 168s Opening the database... [0s] 168s Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) 168s Block size = 2000000000 168s Opening the input file... [0s] 168s Opening the output file... [0s] 168s Loading query sequences... [0s] 168s Masking queries... [0.017s] 168s Algorithm: Double-indexed 168s Building query histograms... [0.007s] 168s Seeking in database... [0s] 168s Loading reference sequences... [0s] 168s Masking reference... [0.008s] 168s Initializing temporary storage... [0s] 168s Building reference histograms... [0.008s] 168s Allocating buffers... [0s] 168s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.002s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0.002s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.003s] 168s Computing hash join... [0.001s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.006s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 168s Building reference seed array... [0.002s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.004s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.004s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.004s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.004s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.004s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0.001s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 168s Building reference seed array... [0.003s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.004s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.004s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.002s] 168s Computing hash join... [0.001s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.006s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 168s Building reference seed array... [0.006s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0.001s] 168s Masking low complexity seeds... [0.001s] 168s Searching alignments... [0.004s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.004s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.004s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0.001s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 168s Building reference seed array... [0.003s] 168s Building query seed array... [0.003s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.006s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.013s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.006s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.004s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 168s Building reference seed array... [0.002s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.002s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.004s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 168s Building reference seed array... [0.002s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.004s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.004s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.002s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.006s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 168s Building reference seed array... [0.005s] 168s Building query seed array... [0.005s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.004s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.004s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.004s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.005s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 168s Building reference seed array... [0.005s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0.001s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.004s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 168s Searching alignments... [0.004s] 168s Deallocating memory... [0s] 168s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 168s Building reference seed array... [0.001s] 168s Building query seed array... [0.001s] 168s Computing hash join... [0s] 168s Masking low complexity seeds... [0s] 169s Searching alignments... [0.004s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0.001s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0.005s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 169s Building reference seed array... [0.003s] 169s Building query seed array... [0.001s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0.007s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 169s Building reference seed array... [0.002s] 169s Building query seed array... [0.002s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0.005s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0.001s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0.004s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0.001s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0.004s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0.001s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0.006s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0.001s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0.004s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0.002s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0.004s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 169s Building reference seed array... [0.007s] 169s Building query seed array... [0.001s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0.005s] 169s Deallocating memory... [0s] 169s Deallocating buffers... [0s] 169s Clearing query masking... [0s] 169s Computing alignments... Loading trace points... [0.003s] 169s Sorting trace points... [0s] 169s Computing alignments... [0.683s] 169s Deallocating buffers... [0s] 169s Loading trace points... [0s] 169s [0.689s] 169s Deallocating reference... [0s] 169s Loading reference sequences... [0s] 169s Deallocating buffers... [0s] 169s Deallocating queries... [0s] 169s Loading query sequences... [0s] 169s Closing the input file... [0s] 169s Closing the output file... [0s] 169s Closing the database... [0s] 169s Cleaning up... [0s] 169s Total time = 1.481s 169s Reported 390 pairwise alignments, 390 HSPs. 169s 40 queries aligned. 169s + diamond blastp --ignore-warnings --threads 1 --db test/L.faa.diamond --query test/C2.faa --out /tmp/tmp.1tjiyxLyuA/C2.faa.vs.L.faa.diamond -e 1e-05 --outfmt 6 --sensitive 169s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 169s Documentation, support and updates available at http://www.diamondsearch.org 169s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 169s 169s #CPU threads: 1 169s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 169s Temporary directory: /tmp/tmp.1tjiyxLyuA 169s #Target sequences to report alignments for: 25 169s Opening the database... [0s] 169s Database: test/L.faa.diamond (type: Diamond database, sequences: 40, letters: 26652) 169s Block size = 2000000000 169s Opening the input file... [0s] 169s Opening the output file... [0s] 169s Loading query sequences... [0s] 169s Masking queries... [0.001s] 169s Algorithm: Double-indexed 169s Building query histograms... [0s] 169s Seeking in database... [0s] 169s Loading reference sequences... [0s] 169s Masking reference... [0.008s] 169s Initializing temporary storage... [0.002s] 169s Building reference histograms... [0.005s] 169s Allocating buffers... [0s] 169s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 169s Building reference seed array... [0.002s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 169s Building reference seed array... [0.002s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 169s Building reference seed array... [0.003s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 169s Building reference seed array... [0.002s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 169s Building reference seed array... [0.002s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0.009s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 169s Building reference seed array... [0.008s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 169s Building reference seed array... [0.004s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0.002s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0.002s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 169s Building reference seed array... [0.005s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 169s Building reference seed array... [0.003s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0.011s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 169s Building reference seed array... [0.001s] 169s Building query seed array... [0s] 169s Computing hash join... [0s] 169s Masking low complexity seeds... [0s] 169s Searching alignments... [0s] 169s Deallocating memory... [0s] 169s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 169s Building reference seed array... [0.002s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 170s Building reference seed array... [0.002s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 170s Building reference seed array... [0.006s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 170s Building reference seed array... [0.002s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0.001s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 170s Building reference seed array... [0.002s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 170s Building reference seed array... [0.002s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0.001s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0.001s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0.002s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 170s Building reference seed array... [0.01s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 170s Building reference seed array... [0.005s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Deallocating buffers... [0s] 170s Clearing query masking... [0s] 170s Computing alignments... Loading trace points... [0.001s] 170s Sorting trace points... [0s] 170s Computing alignments... [0.002s] 170s Deallocating buffers... [0s] 170s Loading trace points... [0s] 170s [0.004s] 170s Deallocating reference... [0s] 170s Loading reference sequences... [0s] 170s Deallocating buffers... [0s] 170s Deallocating queries... [0s] 170s Loading query sequences... [0s] 170s Closing the input file... [0s] 170s Closing the output file... [0s] 170s Closing the database... [0s] 170s Cleaning up... [0s] 170s Total time = 0.342s 170s Reported 1 pairwise alignments, 1 HSPs. 170s 1 queries aligned. 170s + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/L.faa --out /tmp/tmp.1tjiyxLyuA/L.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive 170s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 170s Documentation, support and updates available at http://www.diamondsearch.org 170s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 170s 170s #CPU threads: 1 170s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 170s Temporary directory: /tmp/tmp.1tjiyxLyuA 170s #Target sequences to report alignments for: 25 170s Opening the database... [0s] 170s Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) 170s Block size = 2000000000 170s Opening the input file... [0s] 170s Opening the output file... [0s] 170s Loading query sequences... [0s] 170s Masking queries... [0.012s] 170s Algorithm: Double-indexed 170s Building query histograms... [0.011s] 170s Seeking in database... [0s] 170s Loading reference sequences... [0s] 170s Masking reference... [0s] 170s Initializing temporary storage... [0s] 170s Building reference histograms... [0s] 170s Allocating buffers... [0s] 170s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 170s Building reference seed array... [0.005s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0.001s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0.004s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0.003s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.002s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 170s Building reference seed array... [0.004s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.009s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 170s Building reference seed array... [0.003s] 170s Building query seed array... [0.004s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0.001s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0.001s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.002s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.006s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0.001s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.002s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0.001s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0.004s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0.002s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 170s Building reference seed array... [0.002s] 170s Building query seed array... [0.002s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.005s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.005s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0.005s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.004s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0.005s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.003s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.002s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 170s Building reference seed array... [0.005s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0.001s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.004s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 170s Building reference seed array... [0.003s] 170s Building query seed array... [0.002s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.002s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Deallocating buffers... [0s] 170s Clearing query masking... [0s] 170s Computing alignments... Loading trace points... [0.001s] 170s Sorting trace points... [0s] 170s Computing alignments... [0.001s] 170s Deallocating buffers... [0s] 170s Loading trace points... [0s] 170s [0.004s] 170s Deallocating reference... [0s] 170s Loading reference sequences... [0s] 170s Deallocating buffers... [0s] 170s Deallocating queries... [0s] 170s Loading query sequences... [0s] 170s Closing the input file... [0s] 170s Closing the output file... [0s] 170s Closing the database... [0s] 170s Cleaning up... [0s] 170s Total time = 0.402s 170s Reported 1 pairwise alignments, 1 HSPs. 170s 1 queries aligned. 170s + diamond blastp --ignore-warnings --threads 1 --db test/M.faa.diamond --query test/C2.faa --out /tmp/tmp.1tjiyxLyuA/C2.faa.vs.M.faa.diamond -e 1e-05 --outfmt 6 --sensitive 170s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 170s Documentation, support and updates available at http://www.diamondsearch.org 170s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 170s 170s #CPU threads: 1 170s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 170s Temporary directory: /tmp/tmp.1tjiyxLyuA 170s #Target sequences to report alignments for: 25 170s Opening the database... [0s] 170s Database: test/M.faa.diamond (type: Diamond database, sequences: 40, letters: 26963) 170s Block size = 2000000000 170s Opening the input file... [0s] 170s Opening the output file... [0s] 170s Loading query sequences... [0s] 170s Masking queries... [0.001s] 170s Algorithm: Double-indexed 170s Building query histograms... [0s] 170s Seeking in database... [0s] 170s Loading reference sequences... [0s] 170s Masking reference... [0.009s] 170s Initializing temporary storage... [0s] 170s Building reference histograms... [0.008s] 170s Allocating buffers... [0s] 170s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 170s Building reference seed array... [0.002s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 170s Building reference seed array... [0.002s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0.002s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0.001s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 170s Building reference seed array... [0.005s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0.005s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 170s Building reference seed array... [0.002s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0.002s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 170s Building reference seed array... [0.002s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0.004s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 170s Building reference seed array... [0.002s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 170s Building reference seed array... [0.002s] 170s Building query seed array... [0.008s] 170s Computing hash join... [0.002s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0.001s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0.003s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 170s Building reference seed array... [0.002s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 170s Building reference seed array... [0.006s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 170s Building reference seed array... [0.002s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 170s Building reference seed array... [0.015s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 170s Building reference seed array... [0.006s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0.003s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 170s Building reference seed array... [0.003s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 170s Building reference seed array... [0.006s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 170s Building reference seed array... [0.002s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 170s Building reference seed array... [0.002s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Deallocating buffers... [0s] 170s Clearing query masking... [0s] 170s Computing alignments... Loading trace points... [0.001s] 170s Sorting trace points... [0s] 170s Computing alignments... [0.001s] 170s Deallocating buffers... [0s] 170s Loading trace points... [0s] 170s [0.004s] 170s Deallocating reference... [0s] 170s Loading reference sequences... [0s] 170s Deallocating buffers... [0s] 170s Deallocating queries... [0s] 170s Loading query sequences... [0s] 170s Closing the input file... [0s] 170s Closing the output file... [0s] 170s Closing the database... [0s] 170s Cleaning up... [0s] 170s Total time = 0.346s 170s Reported 1 pairwise alignments, 1 HSPs. 170s 1 queries aligned. 170s + diamond blastp --threads 1 --db test/C2.faa.diamond --query test/M.faa --out /tmp/tmp.1tjiyxLyuA/M.faa.vs.C2.faa.diamond -e 1e-05 --outfmt 6 --sensitive 170s diamond v2.1.9.163 (C) Max Planck Society for the Advancement of Science, Benjamin Buchfink, University of Tuebingen 170s Documentation, support and updates available at http://www.diamondsearch.org 170s Please cite: http://dx.doi.org/10.1038/s41592-021-01101-x Nature Methods (2021) 170s 170s #CPU threads: 1 170s Scoring parameters: (Matrix=BLOSUM62 Lambda=0.267 K=0.041 Penalties=11/1) 170s Temporary directory: /tmp/tmp.1tjiyxLyuA 170s #Target sequences to report alignments for: 25 170s Opening the database... [0s] 170s Database: test/C2.faa.diamond (type: Diamond database, sequences: 2, letters: 726) 170s Block size = 2000000000 170s Opening the input file... [0s] 170s Opening the output file... [0s] 170s Loading query sequences... [0s] 170s Masking queries... [0.015s] 170s Algorithm: Double-indexed 170s Building query histograms... [0.006s] 170s Seeking in database... [0s] 170s Loading reference sequences... [0s] 170s Masking reference... [0s] 170s Initializing temporary storage... [0s] 170s Building reference histograms... [0s] 170s Allocating buffers... [0s] 170s Processing query block 1, reference block 1/1, shape 1/16, index chunk 1/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 1/16, index chunk 2/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 1/16, index chunk 3/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 1/16, index chunk 4/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 2/16, index chunk 1/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 2/16, index chunk 2/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 2/16, index chunk 3/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 2/16, index chunk 4/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 3/16, index chunk 1/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 3/16, index chunk 2/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 3/16, index chunk 3/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 3/16, index chunk 4/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 4/16, index chunk 1/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 4/16, index chunk 2/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 4/16, index chunk 3/4. 170s Building reference seed array... [0.001s] 170s Building query seed array... [0.002s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 4/16, index chunk 4/4. 170s Building reference seed array... [0s] 170s Building query seed array... [0.001s] 170s Computing hash join... [0s] 170s Masking low complexity seeds... [0s] 170s Searching alignments... [0s] 170s Deallocating memory... [0s] 170s Processing query block 1, reference block 1/1, shape 5/16, index chunk 1/4. 170s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 5/16, index chunk 2/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 5/16, index chunk 3/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 5/16, index chunk 4/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 6/16, index chunk 1/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 6/16, index chunk 2/4. 171s Building reference seed array... [0.002s] 171s Building query seed array... [0.007s] 171s Computing hash join... [0.003s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0.001s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 6/16, index chunk 3/4. 171s Building reference seed array... [0.002s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0.001s] 171s Searching alignments... [0.001s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 6/16, index chunk 4/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 7/16, index chunk 1/4. 171s Building reference seed array... [0.004s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0.002s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 7/16, index chunk 2/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 7/16, index chunk 3/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 7/16, index chunk 4/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 8/16, index chunk 1/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 8/16, index chunk 2/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 8/16, index chunk 3/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 8/16, index chunk 4/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 9/16, index chunk 1/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 9/16, index chunk 2/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.006s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0.004s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 9/16, index chunk 3/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 9/16, index chunk 4/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 10/16, index chunk 1/4. 171s Building reference seed array... [0.001s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 10/16, index chunk 2/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.002s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 10/16, index chunk 3/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0.001s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 10/16, index chunk 4/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 11/16, index chunk 1/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 11/16, index chunk 2/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 11/16, index chunk 3/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 11/16, index chunk 4/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 12/16, index chunk 1/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 12/16, index chunk 2/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 12/16, index chunk 3/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 12/16, index chunk 4/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0.001s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 13/16, index chunk 1/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 13/16, index chunk 2/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 13/16, index chunk 3/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 13/16, index chunk 4/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 14/16, index chunk 1/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 14/16, index chunk 2/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0.001s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 14/16, index chunk 3/4. 171s Building reference seed array... [0.003s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 14/16, index chunk 4/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 15/16, index chunk 1/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 15/16, index chunk 2/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 15/16, index chunk 3/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 15/16, index chunk 4/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 16/16, index chunk 1/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 16/16, index chunk 2/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 16/16, index chunk 3/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Processing query block 1, reference block 1/1, shape 16/16, index chunk 4/4. 171s Building reference seed array... [0s] 171s Building query seed array... [0.001s] 171s Computing hash join... [0s] 171s Masking low complexity seeds... [0s] 171s Searching alignments... [0s] 171s Deallocating memory... [0s] 171s Deallocating buffers... [0s] 171s Clearing query masking... [0s] 171s Computing alignments... Loading trace points... [0.001s] 171s Sorting trace points... [0s] 171s Computing alignments... [0.001s] 171s Deallocating buffers... [0s] 171s Loading trace points... [0s] 171s [0.003s] 171s Deallocating reference... [0s] 171s Loading reference sequences... [0s] 171s Deallocating buffers... [0s] 171s Deallocating queries... [0s] 171s Loading query sequences... [0s] 171s Closing the input file... [0s] 171s Closing the output file... [0s] 171s Closing the database... [0s] 171s Cleaning up... [0s] 171s Total time = 0.322s 171s Reported 1 pairwise alignments, 1 HSPs. 171s 1 queries aligned. 171s + rm -rf /tmp/tmp.1tjiyxLyuA 171s autopkgtest [22:45:37]: test run-unit-test: -----------------------] 172s autopkgtest [22:45:38]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 172s run-unit-test PASS 172s autopkgtest [22:45:38]: @@@@@@@@@@@@@@@@@@@@ summary 172s run-unit-test PASS 178s nova [W] Using flock in prodstack6-ppc64el 178s Creating nova instance adt-plucky-ppc64el-diamond-aligner-20250215-224246-juju-7f2275-prod-proposed-migration-environment-2-ee6baae1-b241-4e32-9a86-3f74b4354750 from image adt/ubuntu-plucky-ppc64el-server-20250215.img (UUID 6b0563e5-c35c-4c0f-8fb5-aae43570455f)... 178s nova [W] Timed out waiting for 710128b4-93af-4902-873f-116c2629614b to get deleted.