0s autopkgtest [11:40:04]: starting date and time: 2024-11-13 11:40:04+0000 0s autopkgtest [11:40:04]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [11:40:04]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.961c6exl/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade cyvcf2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-ppc64el-26.secgroup --name adt-plucky-ppc64el-cyvcf2-20241113-112328-juju-7f2275-prod-proposed-migration-environment-15-b3032250-709a-4b83-a1ed-20fa97e93cc9 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 136s autopkgtest [11:42:20]: testbed dpkg architecture: ppc64el 136s autopkgtest [11:42:20]: testbed apt version: 2.9.8 136s autopkgtest [11:42:20]: @@@@@@@@@@@@@@@@@@@@ test bed setup 137s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 137s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 137s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 137s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 137s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 137s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [86.2 kB] 137s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [588 kB] 137s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [19.6 kB] 138s Fetched 1715 kB in 1s (1622 kB/s) 138s Reading package lists... 141s Reading package lists... 141s Building dependency tree... 141s Reading state information... 141s Calculating upgrade... 141s The following NEW packages will be installed: 141s python3.13-gdbm 141s The following packages will be upgraded: 141s libpython3-stdlib python3 python3-gdbm python3-minimal 141s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 141s Need to get 102 kB of archives. 141s After this operation, 141 kB of additional disk space will be used. 141s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-minimal ppc64el 3.12.7-1 [27.4 kB] 142s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3 ppc64el 3.12.7-1 [24.0 kB] 142s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libpython3-stdlib ppc64el 3.12.7-1 [10.0 kB] 142s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-gdbm ppc64el 3.13.0-2 [31.5 kB] 142s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-gdbm ppc64el 3.12.7-1 [8640 B] 142s Fetched 102 kB in 0s (277 kB/s) 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 143s Preparing to unpack .../python3-minimal_3.12.7-1_ppc64el.deb ... 143s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 143s Setting up python3-minimal (3.12.7-1) ... 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 143s Preparing to unpack .../python3_3.12.7-1_ppc64el.deb ... 143s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 143s Preparing to unpack .../libpython3-stdlib_3.12.7-1_ppc64el.deb ... 143s Unpacking libpython3-stdlib:ppc64el (3.12.7-1) over (3.12.6-0ubuntu1) ... 143s Selecting previously unselected package python3.13-gdbm. 143s Preparing to unpack .../python3.13-gdbm_3.13.0-2_ppc64el.deb ... 143s Unpacking python3.13-gdbm (3.13.0-2) ... 143s Preparing to unpack .../python3-gdbm_3.12.7-1_ppc64el.deb ... 143s Unpacking python3-gdbm:ppc64el (3.12.7-1) over (3.12.6-1ubuntu1) ... 143s Setting up python3.13-gdbm (3.13.0-2) ... 143s Setting up libpython3-stdlib:ppc64el (3.12.7-1) ... 143s Setting up python3 (3.12.7-1) ... 144s Setting up python3-gdbm:ppc64el (3.12.7-1) ... 144s Processing triggers for man-db (2.12.1-3) ... 145s Reading package lists... 146s Building dependency tree... 146s Reading state information... 146s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 146s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 146s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 146s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 147s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 148s Reading package lists... 148s Reading package lists... 148s Building dependency tree... 148s Reading state information... 148s Calculating upgrade... 148s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 148s Reading package lists... 149s Building dependency tree... 149s Reading state information... 149s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 152s autopkgtest [11:42:36]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 13:49:23 UTC 2024 152s autopkgtest [11:42:36]: @@@@@@@@@@@@@@@@@@@@ apt-source cyvcf2 154s Get:1 http://ftpmaster.internal/ubuntu plucky/universe cyvcf2 0.31.1-2 (dsc) [2337 B] 154s Get:2 http://ftpmaster.internal/ubuntu plucky/universe cyvcf2 0.31.1-2 (tar) [420 kB] 154s Get:3 http://ftpmaster.internal/ubuntu plucky/universe cyvcf2 0.31.1-2 (diff) [6764 B] 154s gpgv: Signature made Wed Jul 31 09:42:06 2024 UTC 154s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 154s gpgv: Can't check signature: No public key 154s dpkg-source: warning: cannot verify inline signature for ./cyvcf2_0.31.1-2.dsc: no acceptable signature found 154s autopkgtest [11:42:38]: testing package cyvcf2 version 0.31.1-2 155s autopkgtest [11:42:39]: build not needed 155s autopkgtest [11:42:39]: test run-unit-test: preparing testbed 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 157s Starting pkgProblemResolver with broken count: 0 157s Starting 2 pkgProblemResolver with broken count: 0 157s Done 157s The following additional packages will be installed: 157s libblas3 libdeflate0 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 157s libpython3.13-minimal libpython3.13-stdlib python3-all python3-click 157s python3-colorama python3-coloredlogs python3-cyvcf2 python3-humanfriendly 157s python3-iniconfig python3-numpy python3-packaging python3-pluggy 157s python3-pytest python3.13 python3.13-minimal 157s Suggested packages: 157s gcc gfortran python-numpy-doc python3-dev python3.13-venv python3.13-doc 157s binfmt-support 157s The following NEW packages will be installed: 157s autopkgtest-satdep libblas3 libdeflate0 libgfortran5 libhts3t64 157s libhtscodecs2 liblapack3 libpython3.13-minimal libpython3.13-stdlib 157s python3-all python3-click python3-colorama python3-coloredlogs 157s python3-cyvcf2 python3-humanfriendly python3-iniconfig python3-numpy 157s python3-packaging python3-pluggy python3-pytest python3.13 157s python3.13-minimal 157s 0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded. 157s Need to get 16.3 MB/16.3 MB of archives. 157s After this operation, 71.0 MB of additional disk space will be used. 157s Get:1 /tmp/autopkgtest.sYKvzw/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [720 B] 158s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-minimal ppc64el 3.13.0-2 [881 kB] 158s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-minimal ppc64el 3.13.0-2 [2302 kB] 159s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-3build2 [222 kB] 159s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.22-1 [63.3 kB] 159s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-8ubuntu1 [571 kB] 159s Get:7 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhtscodecs2 ppc64el 1.6.1-1 [113 kB] 159s Get:8 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhts3t64 ppc64el 1.20+ds-1 [567 kB] 159s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-3build2 [2806 kB] 160s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-stdlib ppc64el 3.13.0-2 [2148 kB] 160s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13 ppc64el 3.13.0-2 [719 kB] 160s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-all ppc64el 3.12.7-1 [888 B] 160s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-colorama all 0.4.6-4 [32.1 kB] 160s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-click all 8.1.7-2 [79.5 kB] 160s Get:15 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-humanfriendly all 10.0-6 [70.8 kB] 160s Get:16 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-coloredlogs all 15.0.1-1 [38.2 kB] 160s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-11build1 [4434 kB] 160s Get:18 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-cyvcf2 ppc64el 0.31.1-2 [968 kB] 161s Get:19 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 161s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-packaging all 24.1-1 [41.4 kB] 161s Get:21 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pluggy all 1.5.0-1 [21.0 kB] 161s Get:22 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pytest all 8.3.3-1 [251 kB] 161s Fetched 16.3 MB in 3s (5132 kB/s) 161s Selecting previously unselected package libpython3.13-minimal:ppc64el. 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73774 files and directories currently installed.) 161s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_ppc64el.deb ... 161s Unpacking libpython3.13-minimal:ppc64el (3.13.0-2) ... 161s Selecting previously unselected package python3.13-minimal. 161s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_ppc64el.deb ... 161s Unpacking python3.13-minimal (3.13.0-2) ... 161s Selecting previously unselected package libblas3:ppc64el. 161s Preparing to unpack .../02-libblas3_3.12.0-3build2_ppc64el.deb ... 161s Unpacking libblas3:ppc64el (3.12.0-3build2) ... 161s Selecting previously unselected package libdeflate0:ppc64el. 161s Preparing to unpack .../03-libdeflate0_1.22-1_ppc64el.deb ... 161s Unpacking libdeflate0:ppc64el (1.22-1) ... 161s Selecting previously unselected package libgfortran5:ppc64el. 161s Preparing to unpack .../04-libgfortran5_14.2.0-8ubuntu1_ppc64el.deb ... 161s Unpacking libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 161s Selecting previously unselected package libhtscodecs2:ppc64el. 161s Preparing to unpack .../05-libhtscodecs2_1.6.1-1_ppc64el.deb ... 161s Unpacking libhtscodecs2:ppc64el (1.6.1-1) ... 161s Selecting previously unselected package libhts3t64:ppc64el. 161s Preparing to unpack .../06-libhts3t64_1.20+ds-1_ppc64el.deb ... 161s Unpacking libhts3t64:ppc64el (1.20+ds-1) ... 161s Selecting previously unselected package liblapack3:ppc64el. 161s Preparing to unpack .../07-liblapack3_3.12.0-3build2_ppc64el.deb ... 161s Unpacking liblapack3:ppc64el (3.12.0-3build2) ... 161s Selecting previously unselected package libpython3.13-stdlib:ppc64el. 161s Preparing to unpack .../08-libpython3.13-stdlib_3.13.0-2_ppc64el.deb ... 161s Unpacking libpython3.13-stdlib:ppc64el (3.13.0-2) ... 161s Selecting previously unselected package python3.13. 161s Preparing to unpack .../09-python3.13_3.13.0-2_ppc64el.deb ... 161s Unpacking python3.13 (3.13.0-2) ... 161s Selecting previously unselected package python3-all. 161s Preparing to unpack .../10-python3-all_3.12.7-1_ppc64el.deb ... 161s Unpacking python3-all (3.12.7-1) ... 162s Selecting previously unselected package python3-colorama. 162s Preparing to unpack .../11-python3-colorama_0.4.6-4_all.deb ... 162s Unpacking python3-colorama (0.4.6-4) ... 162s Selecting previously unselected package python3-click. 162s Preparing to unpack .../12-python3-click_8.1.7-2_all.deb ... 162s Unpacking python3-click (8.1.7-2) ... 162s Selecting previously unselected package python3-humanfriendly. 162s Preparing to unpack .../13-python3-humanfriendly_10.0-6_all.deb ... 162s Unpacking python3-humanfriendly (10.0-6) ... 162s Selecting previously unselected package python3-coloredlogs. 162s Preparing to unpack .../14-python3-coloredlogs_15.0.1-1_all.deb ... 162s Unpacking python3-coloredlogs (15.0.1-1) ... 162s Selecting previously unselected package python3-numpy. 162s Preparing to unpack .../15-python3-numpy_1%3a1.26.4+ds-11build1_ppc64el.deb ... 162s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 162s Selecting previously unselected package python3-cyvcf2. 162s Preparing to unpack .../16-python3-cyvcf2_0.31.1-2_ppc64el.deb ... 162s Unpacking python3-cyvcf2 (0.31.1-2) ... 162s Selecting previously unselected package python3-iniconfig. 162s Preparing to unpack .../17-python3-iniconfig_1.1.1-2_all.deb ... 162s Unpacking python3-iniconfig (1.1.1-2) ... 162s Selecting previously unselected package python3-packaging. 162s Preparing to unpack .../18-python3-packaging_24.1-1_all.deb ... 162s Unpacking python3-packaging (24.1-1) ... 162s Selecting previously unselected package python3-pluggy. 162s Preparing to unpack .../19-python3-pluggy_1.5.0-1_all.deb ... 162s Unpacking python3-pluggy (1.5.0-1) ... 162s Selecting previously unselected package python3-pytest. 162s Preparing to unpack .../20-python3-pytest_8.3.3-1_all.deb ... 162s Unpacking python3-pytest (8.3.3-1) ... 162s Selecting previously unselected package autopkgtest-satdep. 162s Preparing to unpack .../21-1-autopkgtest-satdep.deb ... 162s Unpacking autopkgtest-satdep (0) ... 162s Setting up libhtscodecs2:ppc64el (1.6.1-1) ... 162s Setting up python3-iniconfig (1.1.1-2) ... 162s Setting up python3-colorama (0.4.6-4) ... 163s Setting up libdeflate0:ppc64el (1.22-1) ... 163s Setting up python3-click (8.1.7-2) ... 163s Setting up libpython3.13-minimal:ppc64el (3.13.0-2) ... 163s Setting up libblas3:ppc64el (3.12.0-3build2) ... 163s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 163s Setting up python3-packaging (24.1-1) ... 163s Setting up python3-humanfriendly (10.0-6) ... 164s Setting up libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 164s Setting up python3-pluggy (1.5.0-1) ... 164s Setting up libhts3t64:ppc64el (1.20+ds-1) ... 164s Setting up python3.13-minimal (3.13.0-2) ... 165s Setting up python3-coloredlogs (15.0.1-1) ... 165s Setting up libpython3.13-stdlib:ppc64el (3.13.0-2) ... 165s Setting up liblapack3:ppc64el (3.12.0-3build2) ... 165s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 165s Setting up python3.13 (3.13.0-2) ... 166s Setting up python3-pytest (8.3.3-1) ... 167s Setting up python3-all (3.12.7-1) ... 167s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 173s Setting up python3-cyvcf2 (0.31.1-2) ... 173s Setting up autopkgtest-satdep (0) ... 173s Processing triggers for systemd (256.5-2ubuntu4) ... 173s Processing triggers for man-db (2.12.1-3) ... 174s Processing triggers for libc-bin (2.40-1ubuntu3) ... 177s (Reading database ... 75774 files and directories currently installed.) 177s Removing autopkgtest-satdep (0) ... 177s autopkgtest [11:43:01]: test run-unit-test: [----------------------- 178s Testing with python3.13 in /tmp/autopkgtest.sYKvzw/autopkgtest_tmp: 178s ============================= test session starts ============================== 178s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 178s cachedir: .pytest_cache 178s rootdir: /tmp/autopkgtest.sYKvzw/autopkgtest_tmp 178s plugins: typeguard-4.4.1 178s collecting ... collected 0 items / 4 errors 178s 178s ==================================== ERRORS ==================================== 178s __________________ ERROR collecting cyvcf2/tests/test_cli.py ___________________ 178s ImportError while importing test module '/tmp/autopkgtest.sYKvzw/autopkgtest_tmp/cyvcf2/tests/test_cli.py'. 178s Hint: make sure your test modules/packages have valid Python names. 178s Traceback: 178s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 178s return _bootstrap._gcd_import(name[level:], package, level) 178s cyvcf2/__init__.py:1: in 178s from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness, 178s E ModuleNotFoundError: No module named 'cyvcf2.cyvcf2' 178s __________________ ERROR collecting cyvcf2/tests/test_hemi.py __________________ 178s ImportError while importing test module '/tmp/autopkgtest.sYKvzw/autopkgtest_tmp/cyvcf2/tests/test_hemi.py'. 178s Hint: make sure your test modules/packages have valid Python names. 178s Traceback: 178s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 178s return _bootstrap._gcd_import(name[level:], package, level) 178s cyvcf2/__init__.py:1: in 178s from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness, 178s E ModuleNotFoundError: No module named 'cyvcf2.cyvcf2' 178s _________________ ERROR collecting cyvcf2/tests/test_reader.py _________________ 178s ImportError while importing test module '/tmp/autopkgtest.sYKvzw/autopkgtest_tmp/cyvcf2/tests/test_reader.py'. 178s Hint: make sure your test modules/packages have valid Python names. 178s Traceback: 178s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 178s return _bootstrap._gcd_import(name[level:], package, level) 178s cyvcf2/__init__.py:1: in 178s from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness, 178s E ModuleNotFoundError: No module named 'cyvcf2.cyvcf2' 178s _________________ ERROR collecting cyvcf2/tests/test_writer.py _________________ 178s ImportError while importing test module '/tmp/autopkgtest.sYKvzw/autopkgtest_tmp/cyvcf2/tests/test_writer.py'. 178s Hint: make sure your test modules/packages have valid Python names. 178s Traceback: 178s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 178s return _bootstrap._gcd_import(name[level:], package, level) 178s cyvcf2/__init__.py:1: in 178s from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness, 178s E ModuleNotFoundError: No module named 'cyvcf2.cyvcf2' 178s =========================== short test summary info ============================ 178s ERROR cyvcf2/tests/test_cli.py 178s ERROR cyvcf2/tests/test_hemi.py 178s ERROR cyvcf2/tests/test_reader.py 178s ERROR cyvcf2/tests/test_writer.py 178s !!!!!!!!!!!!!!!!!!! Interrupted: 4 errors during collection !!!!!!!!!!!!!!!!!!!! 178s ============================== 4 errors in 0.15s =============================== 179s autopkgtest [11:43:03]: test run-unit-test: -----------------------] 179s run-unit-test FAIL non-zero exit status 2 179s autopkgtest [11:43:03]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 180s autopkgtest [11:43:04]: test autodep8-python3: preparing testbed 312s autopkgtest [11:45:16]: testbed dpkg architecture: ppc64el 313s autopkgtest [11:45:17]: testbed apt version: 2.9.8 313s autopkgtest [11:45:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 313s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 314s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 314s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 314s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 314s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 314s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [86.2 kB] 314s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [588 kB] 314s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [19.6 kB] 314s Fetched 1715 kB in 1s (1746 kB/s) 314s Reading package lists... 317s Reading package lists... 317s Building dependency tree... 317s Reading state information... 317s Calculating upgrade... 317s The following NEW packages will be installed: 317s python3.13-gdbm 317s The following packages will be upgraded: 317s libpython3-stdlib python3 python3-gdbm python3-minimal 318s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 318s Need to get 102 kB of archives. 318s After this operation, 141 kB of additional disk space will be used. 318s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-minimal ppc64el 3.12.7-1 [27.4 kB] 318s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3 ppc64el 3.12.7-1 [24.0 kB] 318s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el libpython3-stdlib ppc64el 3.12.7-1 [10.0 kB] 318s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-gdbm ppc64el 3.13.0-2 [31.5 kB] 318s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-gdbm ppc64el 3.12.7-1 [8640 B] 318s Fetched 102 kB in 0s (294 kB/s) 318s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 318s Preparing to unpack .../python3-minimal_3.12.7-1_ppc64el.deb ... 318s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 319s Setting up python3-minimal (3.12.7-1) ... 319s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73767 files and directories currently installed.) 319s Preparing to unpack .../python3_3.12.7-1_ppc64el.deb ... 319s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 319s Preparing to unpack .../libpython3-stdlib_3.12.7-1_ppc64el.deb ... 319s Unpacking libpython3-stdlib:ppc64el (3.12.7-1) over (3.12.6-0ubuntu1) ... 319s Selecting previously unselected package python3.13-gdbm. 319s Preparing to unpack .../python3.13-gdbm_3.13.0-2_ppc64el.deb ... 319s Unpacking python3.13-gdbm (3.13.0-2) ... 319s Preparing to unpack .../python3-gdbm_3.12.7-1_ppc64el.deb ... 319s Unpacking python3-gdbm:ppc64el (3.12.7-1) over (3.12.6-1ubuntu1) ... 319s Setting up python3.13-gdbm (3.13.0-2) ... 319s Setting up libpython3-stdlib:ppc64el (3.12.7-1) ... 319s Setting up python3 (3.12.7-1) ... 319s Setting up python3-gdbm:ppc64el (3.12.7-1) ... 319s Processing triggers for man-db (2.12.1-3) ... 321s Reading package lists... 321s Building dependency tree... 321s Reading state information... 321s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 321s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 321s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 322s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 322s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 323s Reading package lists... 323s Reading package lists... 323s Building dependency tree... 323s Reading state information... 323s Calculating upgrade... 323s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 324s Reading package lists... 324s Building dependency tree... 324s Reading state information... 324s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 328s Reading package lists... 328s Building dependency tree... 328s Reading state information... 328s Starting pkgProblemResolver with broken count: 0 328s Starting 2 pkgProblemResolver with broken count: 0 328s Done 329s The following additional packages will be installed: 329s libblas3 libdeflate0 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 329s libpython3.13-minimal libpython3.13-stdlib python3-all python3-click 329s python3-colorama python3-coloredlogs python3-cyvcf2 python3-humanfriendly 329s python3-numpy python3.13 python3.13-minimal 329s Suggested packages: 329s gcc gfortran python-numpy-doc python3-dev python3-pytest python3.13-venv 329s python3.13-doc binfmt-support 329s The following NEW packages will be installed: 329s autopkgtest-satdep libblas3 libdeflate0 libgfortran5 libhts3t64 329s libhtscodecs2 liblapack3 libpython3.13-minimal libpython3.13-stdlib 329s python3-all python3-click python3-colorama python3-coloredlogs 329s python3-cyvcf2 python3-humanfriendly python3-numpy python3.13 329s python3.13-minimal 329s 0 upgraded, 18 newly installed, 0 to remove and 0 not upgraded. 329s Need to get 16.0 MB/16.0 MB of archives. 329s After this operation, 69.4 MB of additional disk space will be used. 329s Get:1 /tmp/autopkgtest.sYKvzw/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 329s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-minimal ppc64el 3.13.0-2 [881 kB] 329s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-minimal ppc64el 3.13.0-2 [2302 kB] 330s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.0-3build2 [222 kB] 330s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.22-1 [63.3 kB] 330s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 14.2.0-8ubuntu1 [571 kB] 330s Get:7 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhtscodecs2 ppc64el 1.6.1-1 [113 kB] 330s Get:8 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhts3t64 ppc64el 1.20+ds-1 [567 kB] 330s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.0-3build2 [2806 kB] 330s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-stdlib ppc64el 3.13.0-2 [2148 kB] 330s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13 ppc64el 3.13.0-2 [719 kB] 330s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el python3-all ppc64el 3.12.7-1 [888 B] 330s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-colorama all 0.4.6-4 [32.1 kB] 330s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-click all 8.1.7-2 [79.5 kB] 330s Get:15 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-humanfriendly all 10.0-6 [70.8 kB] 330s Get:16 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-coloredlogs all 15.0.1-1 [38.2 kB] 330s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-11build1 [4434 kB] 330s Get:18 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-cyvcf2 ppc64el 0.31.1-2 [968 kB] 330s Fetched 16.0 MB in 1s (13.3 MB/s) 330s Selecting previously unselected package libpython3.13-minimal:ppc64el. 330s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73774 files and directories currently installed.) 331s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_ppc64el.deb ... 331s Unpacking libpython3.13-minimal:ppc64el (3.13.0-2) ... 331s Selecting previously unselected package python3.13-minimal. 331s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_ppc64el.deb ... 331s Unpacking python3.13-minimal (3.13.0-2) ... 331s Selecting previously unselected package libblas3:ppc64el. 331s Preparing to unpack .../02-libblas3_3.12.0-3build2_ppc64el.deb ... 331s Unpacking libblas3:ppc64el (3.12.0-3build2) ... 331s Selecting previously unselected package libdeflate0:ppc64el. 331s Preparing to unpack .../03-libdeflate0_1.22-1_ppc64el.deb ... 331s Unpacking libdeflate0:ppc64el (1.22-1) ... 331s Selecting previously unselected package libgfortran5:ppc64el. 331s Preparing to unpack .../04-libgfortran5_14.2.0-8ubuntu1_ppc64el.deb ... 331s Unpacking libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 331s Selecting previously unselected package libhtscodecs2:ppc64el. 331s Preparing to unpack .../05-libhtscodecs2_1.6.1-1_ppc64el.deb ... 331s Unpacking libhtscodecs2:ppc64el (1.6.1-1) ... 331s Selecting previously unselected package libhts3t64:ppc64el. 331s Preparing to unpack .../06-libhts3t64_1.20+ds-1_ppc64el.deb ... 331s Unpacking libhts3t64:ppc64el (1.20+ds-1) ... 331s Selecting previously unselected package liblapack3:ppc64el. 331s Preparing to unpack .../07-liblapack3_3.12.0-3build2_ppc64el.deb ... 331s Unpacking liblapack3:ppc64el (3.12.0-3build2) ... 331s Selecting previously unselected package libpython3.13-stdlib:ppc64el. 331s Preparing to unpack .../08-libpython3.13-stdlib_3.13.0-2_ppc64el.deb ... 331s Unpacking libpython3.13-stdlib:ppc64el (3.13.0-2) ... 331s Selecting previously unselected package python3.13. 331s Preparing to unpack .../09-python3.13_3.13.0-2_ppc64el.deb ... 331s Unpacking python3.13 (3.13.0-2) ... 331s Selecting previously unselected package python3-all. 331s Preparing to unpack .../10-python3-all_3.12.7-1_ppc64el.deb ... 331s Unpacking python3-all (3.12.7-1) ... 331s Selecting previously unselected package python3-colorama. 331s Preparing to unpack .../11-python3-colorama_0.4.6-4_all.deb ... 331s Unpacking python3-colorama (0.4.6-4) ... 331s Selecting previously unselected package python3-click. 331s Preparing to unpack .../12-python3-click_8.1.7-2_all.deb ... 331s Unpacking python3-click (8.1.7-2) ... 331s Selecting previously unselected package python3-humanfriendly. 331s Preparing to unpack .../13-python3-humanfriendly_10.0-6_all.deb ... 331s Unpacking python3-humanfriendly (10.0-6) ... 331s Selecting previously unselected package python3-coloredlogs. 331s Preparing to unpack .../14-python3-coloredlogs_15.0.1-1_all.deb ... 331s Unpacking python3-coloredlogs (15.0.1-1) ... 331s Selecting previously unselected package python3-numpy. 331s Preparing to unpack .../15-python3-numpy_1%3a1.26.4+ds-11build1_ppc64el.deb ... 331s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 332s Selecting previously unselected package python3-cyvcf2. 332s Preparing to unpack .../16-python3-cyvcf2_0.31.1-2_ppc64el.deb ... 332s Unpacking python3-cyvcf2 (0.31.1-2) ... 332s Selecting previously unselected package autopkgtest-satdep. 332s Preparing to unpack .../17-2-autopkgtest-satdep.deb ... 332s Unpacking autopkgtest-satdep (0) ... 332s Setting up libhtscodecs2:ppc64el (1.6.1-1) ... 332s Setting up python3-colorama (0.4.6-4) ... 332s Setting up libdeflate0:ppc64el (1.22-1) ... 332s Setting up python3-click (8.1.7-2) ... 333s Setting up libpython3.13-minimal:ppc64el (3.13.0-2) ... 333s Setting up libblas3:ppc64el (3.12.0-3build2) ... 333s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 333s Setting up python3-humanfriendly (10.0-6) ... 333s Setting up libgfortran5:ppc64el (14.2.0-8ubuntu1) ... 333s Setting up libhts3t64:ppc64el (1.20+ds-1) ... 333s Setting up python3.13-minimal (3.13.0-2) ... 334s Setting up python3-coloredlogs (15.0.1-1) ... 334s Setting up libpython3.13-stdlib:ppc64el (3.13.0-2) ... 334s Setting up liblapack3:ppc64el (3.12.0-3build2) ... 334s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 334s Setting up python3.13 (3.13.0-2) ... 336s Setting up python3-all (3.12.7-1) ... 336s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 341s Setting up python3-cyvcf2 (0.31.1-2) ... 341s Setting up autopkgtest-satdep (0) ... 341s Processing triggers for systemd (256.5-2ubuntu4) ... 341s Processing triggers for man-db (2.12.1-3) ... 342s Processing triggers for libc-bin (2.40-1ubuntu3) ... 345s (Reading database ... 75610 files and directories currently installed.) 345s Removing autopkgtest-satdep (0) ... 346s autopkgtest [11:45:50]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import cyvcf2; print(cyvcf2)" ; done 346s autopkgtest [11:45:50]: test autodep8-python3: [----------------------- 347s Testing with python3.13: 347s Traceback (most recent call last): 347s File "", line 1, in 347s import cyvcf2; print(cyvcf2) 347s ^^^^^^^^^^^^^ 347s File "/usr/lib/python3/dist-packages/cyvcf2/__init__.py", line 1, in 347s from .cyvcf2 import (VCF, Variant, Writer, r_ as r_unphased, par_relatedness, 347s par_het) 347s ModuleNotFoundError: No module named 'cyvcf2.cyvcf2' 347s autopkgtest [11:45:51]: test autodep8-python3: -----------------------] 348s autopkgtest [11:45:52]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 348s autodep8-python3 FAIL non-zero exit status 1 348s autopkgtest [11:45:52]: @@@@@@@@@@@@@@@@@@@@ summary 348s run-unit-test FAIL non-zero exit status 2 348s autodep8-python3 FAIL non-zero exit status 1 360s nova [W] Using flock in prodstack6-ppc64el 360s Creating nova instance adt-plucky-ppc64el-cyvcf2-20241113-112328-juju-7f2275-prod-proposed-migration-environment-15-b3032250-709a-4b83-a1ed-20fa97e93cc9 from image adt/ubuntu-plucky-ppc64el-server-20241113.img (UUID 0c5715b6-5cca-4485-b8bf-b85dfd917a5f)... 360s nova [W] Using flock in prodstack6-ppc64el 360s flock: timeout while waiting to get lock 360s Creating nova instance adt-plucky-ppc64el-cyvcf2-20241113-112328-juju-7f2275-prod-proposed-migration-environment-15-b3032250-709a-4b83-a1ed-20fa97e93cc9 from image adt/ubuntu-plucky-ppc64el-server-20241113.img (UUID 0c5715b6-5cca-4485-b8bf-b85dfd917a5f)...