0s autopkgtest [14:45:34]: starting date and time: 2025-03-22 14:45:34+0000 0s autopkgtest [14:45:34]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [14:45:34]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.51lfuwor/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:cctbx --apt-upgrade cctbx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=cctbx/2024.10+ds2+~3.22.1+ds1-4build2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-6.secgroup --name adt-plucky-ppc64el-cctbx-20250322-130600-juju-7f2275-prod-proposed-migration-environment-20-98d79696-5e92-4ec1-bd98-9f335ee08536 --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 81s autopkgtest [14:46:55]: testbed dpkg architecture: ppc64el 81s autopkgtest [14:46:55]: testbed apt version: 2.9.34 81s autopkgtest [14:46:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 82s autopkgtest [14:46:56]: testbed release detected to be: None 82s autopkgtest [14:46:56]: updating testbed package index (apt update) 83s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 83s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 83s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 83s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 83s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [1232 B] 83s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [292 kB] 83s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [12.2 kB] 83s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [30.7 kB] 83s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [42.4 kB] 83s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el c-n-f Metadata [1320 B] 83s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted ppc64el c-n-f Metadata [120 B] 83s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [195 kB] 83s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el c-n-f Metadata [11.1 kB] 83s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [3456 B] 83s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el c-n-f Metadata [216 B] 85s Fetched 716 kB in 1s (896 kB/s) 86s Reading package lists... 86s autopkgtest [14:47:00]: upgrading testbed (apt dist-upgrade and autopurge) 87s Reading package lists... 87s Building dependency tree... 87s Reading state information... 87s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 87s Starting 2 pkgProblemResolver with broken count: 0 87s Done 88s Entering ResolveByKeep 88s 88s Calculating upgrade... 89s The following packages will be upgraded: 89s gcc-15-base ibverbs-providers libatomic1 libgcc-s1 libibverbs1 libstdc++6 89s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 89s Need to get 1511 kB of archives. 89s After this operation, 0 B of additional disk space will be used. 89s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el libatomic1 ppc64el 15-20250319-1ubuntu1 [10.8 kB] 89s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-15-base ppc64el 15-20250319-1ubuntu1 [53.6 kB] 89s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgcc-s1 ppc64el 15-20250319-1ubuntu1 [40.1 kB] 89s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libstdc++6 ppc64el 15-20250319-1ubuntu1 [901 kB] 89s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libibverbs1 ppc64el 56.0-3ubuntu1 [74.1 kB] 89s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el ibverbs-providers ppc64el 56.0-3ubuntu1 [431 kB] 90s Fetched 1511 kB in 1s (2667 kB/s) 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 107156 files and directories currently installed.) 90s Preparing to unpack .../libatomic1_15-20250319-1ubuntu1_ppc64el.deb ... 90s Unpacking libatomic1:ppc64el (15-20250319-1ubuntu1) over (15-20250315-1ubuntu1) ... 90s Preparing to unpack .../gcc-15-base_15-20250319-1ubuntu1_ppc64el.deb ... 90s Unpacking gcc-15-base:ppc64el (15-20250319-1ubuntu1) over (15-20250315-1ubuntu1) ... 90s Setting up gcc-15-base:ppc64el (15-20250319-1ubuntu1) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 107156 files and directories currently installed.) 90s Preparing to unpack .../libgcc-s1_15-20250319-1ubuntu1_ppc64el.deb ... 90s Unpacking libgcc-s1:ppc64el (15-20250319-1ubuntu1) over (15-20250315-1ubuntu1) ... 90s Setting up libgcc-s1:ppc64el (15-20250319-1ubuntu1) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 107156 files and directories currently installed.) 90s Preparing to unpack .../libstdc++6_15-20250319-1ubuntu1_ppc64el.deb ... 90s Unpacking libstdc++6:ppc64el (15-20250319-1ubuntu1) over (15-20250315-1ubuntu1) ... 90s Setting up libstdc++6:ppc64el (15-20250319-1ubuntu1) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 107156 files and directories currently installed.) 90s Preparing to unpack .../libibverbs1_56.0-3ubuntu1_ppc64el.deb ... 90s Unpacking libibverbs1:ppc64el (56.0-3ubuntu1) over (55.0-1ubuntu1) ... 90s Preparing to unpack .../ibverbs-providers_56.0-3ubuntu1_ppc64el.deb ... 90s Unpacking ibverbs-providers:ppc64el (56.0-3ubuntu1) over (55.0-1ubuntu1) ... 90s Setting up libibverbs1:ppc64el (56.0-3ubuntu1) ... 90s Setting up ibverbs-providers:ppc64el (56.0-3ubuntu1) ... 90s Setting up libatomic1:ppc64el (15-20250319-1ubuntu1) ... 90s Processing triggers for libc-bin (2.41-1ubuntu2) ... 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 92s Starting pkgProblemResolver with broken count: 0 92s Starting 2 pkgProblemResolver with broken count: 0 92s Done 92s Solving dependencies... 92s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s autopkgtest [14:47:09]: testbed running kernel: Linux 6.14.0-11-generic #11-Ubuntu SMP Mon Mar 17 12:33:11 UTC 2025 95s autopkgtest [14:47:09]: @@@@@@@@@@@@@@@@@@@@ apt-source cctbx 99s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/universe cctbx 2024.10+ds2+~3.22.1+ds1-4build2 (dsc) [4106 B] 99s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe cctbx 2024.10+ds2+~3.22.1+ds1-4build2 (tar) [378 kB] 99s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe cctbx 2024.10+ds2+~3.22.1+ds1-4build2 (tar) [23.9 MB] 99s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe cctbx 2024.10+ds2+~3.22.1+ds1-4build2 (diff) [418 kB] 99s gpgv: Signature made Tue Mar 4 14:45:06 2025 UTC 99s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 99s gpgv: Can't check signature: No public key 99s dpkg-source: warning: cannot verify inline signature for ./cctbx_2024.10+ds2+~3.22.1+ds1-4build2.dsc: no acceptable signature found 102s autopkgtest [14:47:16]: testing package cctbx version 2024.10+ds2+~3.22.1+ds1-4build2 103s autopkgtest [14:47:17]: build not needed 108s autopkgtest [14:47:22]: test cctbx: preparing testbed 108s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s Starting pkgProblemResolver with broken count: 0 109s Starting 2 pkgProblemResolver with broken count: 0 109s Done 109s The following NEW packages will be installed: 109s adwaita-icon-theme at-spi2-common blt cpp cpp-14 109s cpp-14-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu 109s dconf-gsettings-backend dconf-service fontconfig fontconfig-config 109s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx 109s g++ g++-14 g++-14-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-14 109s gcc-14-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gtk-update-icon-cache 109s hicolor-icon-theme libaec0 libann-cctbx-dev libann-cctbx0 libantlr3c-3.4-0 109s libasan8 libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 109s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 109s libboost-numpy1.83.0 libboost-python-dev libboost-python1.83-dev 109s libboost-python1.83.0 libboost-thread1.83.0 libboost-timer1.83.0 109s libboost1.83-dev libcairo-gobject2 libcairo2 libcbf1t64 libcc1-0 109s libccp4-data libccp4-dev libccp4c0t64 libccp4f0t64 libcctbx-dev libcctbx0 109s libcolord2 libcups2t64 libdatrie1 libdconf1 libdeflate0 109s libdouble-conversion3 libegl-mesa0 libegl1 libepoxy0 libexpat1-dev 109s libfontconfig1 libgbm1 libgcc-14-dev libgdk-pixbuf-2.0-0 109s libgdk-pixbuf2.0-common libgfortran5 libgl1 libgl1-mesa-dri libglew2.2 109s libglu1-mesa libglut3.12 libglvnd0 libglx-mesa0 libglx0 libgomp1 109s libgraphite2-3 libgtk-3-0t64 libgtk-3-common libharfbuzz0b libhdf5-310 109s libhdf5-hl-310 libice6 libimagequant0 libinput-bin libinput10 libisl23 109s libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 109s libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 109s liblsan0 liblzf1 libmd4c0 libmmdb2-0 libmpc3 libmtdev1t64 libnetcdf22 109s libnotify4 libopengl0 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 109s libpangoft2-1.0-0 libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libpython3-dev 109s libpython3.13-dev libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 109s libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64 109s libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 109s libqt5xml5t64 libquadmath0 libraqm0 libsharpyuv0 libsm6 libssm2 109s libstdc++-14-dev libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 109s libtsan2 libubsan1 libvulkan1 libwacom-common libwacom9 libwayland-client0 109s libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 109s libwebpmux3 libwxbase3.2-1t64 libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 109s libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 109s libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 109s libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 109s libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcomposite1 109s libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6 libxinerama1 109s libxkbcommon-x11-0 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 109s libxtst6 libxxf86vm1 mesa-libgallium pymol-data python-matplotlib-data 109s python3-all python3-brotli python3-cctbx python3-contourpy python3-cycler 109s python3-dateutil python3-decorator python3-dev python3-flexcache 109s python3-flexparser python3-fonttools python3-fs python3-h5py 109s python3-h5py-serial python3-hdf5plugin python3-iniconfig python3-kiwisolver 109s python3-legacy-cgi python3-lxml python3-lz4 python3-matplotlib 109s python3-mpmath python3-mrcfile python3-natsort python3-numpy 109s python3-numpy-dev python3-nxmx python3-opengl python3-ordered-set 109s python3-packaging python3-pil python3-pil.imagetk python3-pint 109s python3-platformdirs python3-pluggy python3-procrunner python3-pycbf 109s python3-pymol python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip 109s python3-pytest python3-scipy python3-six python3-sympy python3-tk 109s python3-tqdm python3-ufolib2 python3-wxgtk4.0 python3.13-dev python3.13-tk 109s sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data x11-common zlib1g-dev 109s 0 upgraded, 253 newly installed, 0 to remove and 0 not upgraded. 109s Need to get 255 MB of archives. 109s After this operation, 1257 MB of additional disk space will be used. 109s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-lato all 2.015-1 [2781 kB] 110s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy-dev ppc64el 1:2.2.3+ds-5 [154 kB] 110s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.1-2 [239 kB] 110s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 15-20250319-1ubuntu1 [614 kB] 110s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.1-2 [2813 kB] 110s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:2.2.3+ds-5 [4835 kB] 110s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgdk-pixbuf2.0-common all 2.42.12+dfsg-2 [8004 B] 110s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB] 110s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 110s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.23-1 [63.4 kB] 110s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 110s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB] 110s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB] 110s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB] 110s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB] 110s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgdk-pixbuf-2.0-0 ppc64el 2.42.12+dfsg-2 [191 kB] 111s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el gtk-update-icon-cache ppc64el 4.18.2+ds-1 [55.4 kB] 111s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el hicolor-icon-theme all 0.18-2 [13.3 kB] 111s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el adwaita-icon-theme all 48.0-1 [578 kB] 111s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el at-spi2-common all 2.56.0-2 [9108 B] 111s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtcl8.6 ppc64el 8.6.16+dfsg-1 [1201 kB] 111s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 111s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 111s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-2.1ubuntu1 [37.7 kB] 111s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-2.1ubuntu1 [188 kB] 111s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 111s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 111s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 111s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 111s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtk8.6 ppc64el 8.6.16-1 [946 kB] 111s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-8 [778 kB] 111s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el blt ppc64el 2.5.3+dfsg-8 [4830 B] 111s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libisl23 ppc64el 0.27-1 [882 kB] 111s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libmpc3 ppc64el 1.3.1-1build2 [62.1 kB] 111s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14-powerpc64le-linux-gnu ppc64el 14.2.0-19ubuntu1 [10.5 MB] 111s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14 ppc64el 14.2.0-19ubuntu1 [1038 B] 111s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [5566 B] 111s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp ppc64el 4:14.2.0-1ubuntu1 [22.4 kB] 111s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdconf1 ppc64el 0.40.0-5 [43.7 kB] 111s Get:40 http://ftpmaster.internal/ubuntu plucky/main ppc64el dconf-service ppc64el 0.40.0-5 [30.8 kB] 111s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el dconf-gsettings-backend ppc64el 0.40.0-5 [26.0 kB] 111s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig ppc64el 2.15.0-2.1ubuntu1 [192 kB] 111s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 111s Get:44 http://ftpmaster.internal/ubuntu plucky/universe ppc64el fonts-lyx all 2.4.3-1 [171 kB] 111s Get:45 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcc1-0 ppc64el 15-20250319-1ubuntu1 [48.6 kB] 111s Get:46 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 15-20250319-1ubuntu1 [168 kB] 111s Get:47 http://ftpmaster.internal/ubuntu plucky/main ppc64el libitm1 ppc64el 15-20250319-1ubuntu1 [32.3 kB] 111s Get:48 http://ftpmaster.internal/ubuntu plucky/main ppc64el libasan8 ppc64el 15-20250319-1ubuntu1 [3008 kB] 111s Get:49 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblsan0 ppc64el 15-20250319-1ubuntu1 [1375 kB] 111s Get:50 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtsan2 ppc64el 15-20250319-1ubuntu1 [2733 kB] 112s Get:51 http://ftpmaster.internal/ubuntu plucky/main ppc64el libubsan1 ppc64el 15-20250319-1ubuntu1 [1232 kB] 112s Get:52 http://ftpmaster.internal/ubuntu plucky/main ppc64el libquadmath0 ppc64el 15-20250319-1ubuntu1 [160 kB] 112s Get:53 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgcc-14-dev ppc64el 14.2.0-19ubuntu1 [1620 kB] 112s Get:54 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14-powerpc64le-linux-gnu ppc64el 14.2.0-19ubuntu1 [20.6 MB] 113s Get:55 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14 ppc64el 14.2.0-19ubuntu1 [539 kB] 113s Get:56 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [1226 B] 113s Get:57 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc ppc64el 4:14.2.0-1ubuntu1 [5012 B] 113s Get:58 http://ftpmaster.internal/ubuntu plucky/main ppc64el libstdc++-14-dev ppc64el 14.2.0-19ubuntu1 [2679 kB] 113s Get:59 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14-powerpc64le-linux-gnu ppc64el 14.2.0-19ubuntu1 [12.0 MB] 114s Get:60 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14 ppc64el 14.2.0-19ubuntu1 [22.2 kB] 114s Get:61 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [966 B] 114s Get:62 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++ ppc64el 4:14.2.0-1ubuntu1 [1088 B] 114s Get:63 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libaec0 ppc64el 1.1.3-1 [30.1 kB] 114s Get:64 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libann-cctbx0 ppc64el 1.1.2+doc-9build1 [37.1 kB] 114s Get:65 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libann-cctbx-dev ppc64el 1.1.2+doc-9build1 [52.6 kB] 114s Get:66 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libantlr3c-3.4-0 ppc64el 3.4+dfsg-4build2 [60.7 kB] 114s Get:67 http://ftpmaster.internal/ubuntu plucky/main ppc64el libatk1.0-0t64 ppc64el 2.56.0-2 [59.9 kB] 114s Get:68 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxi6 ppc64el 2:1.8.2-1 [37.9 kB] 114s Get:69 http://ftpmaster.internal/ubuntu plucky/main ppc64el libatspi2.0-0t64 ppc64el 2.56.0-2 [101 kB] 114s Get:70 http://ftpmaster.internal/ubuntu plucky/main ppc64el libatk-bridge2.0-0t64 ppc64el 2.56.0-2 [77.9 kB] 114s Get:71 http://ftpmaster.internal/ubuntu plucky/main ppc64el libavahi-common-data ppc64el 0.8-16ubuntu2 [31.0 kB] 114s Get:72 http://ftpmaster.internal/ubuntu plucky/main ppc64el libavahi-common3 ppc64el 0.8-16ubuntu2 [25.9 kB] 114s Get:73 http://ftpmaster.internal/ubuntu plucky/main ppc64el libavahi-client3 ppc64el 0.8-16ubuntu2 [30.9 kB] 114s Get:74 http://ftpmaster.internal/ubuntu plucky/main ppc64el libboost-python1.83.0 ppc64el 1.83.0-4.1ubuntu2 [318 kB] 114s Get:75 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libboost-numpy1.83.0 ppc64el 1.83.0-4.1ubuntu2 [243 kB] 114s Get:76 http://ftpmaster.internal/ubuntu plucky/main ppc64el libboost1.83-dev ppc64el 1.83.0-4.1ubuntu2 [10.7 MB] 115s Get:77 http://ftpmaster.internal/ubuntu plucky/main ppc64el libexpat1-dev ppc64el 2.6.4-1 [149 kB] 115s Get:78 http://ftpmaster.internal/ubuntu plucky/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu1 [902 kB] 115s Get:79 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-dev ppc64el 3.13.2-2 [5971 kB] 115s Get:80 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3-dev ppc64el 3.13.2-2 [10.7 kB] 115s Get:81 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-dev ppc64el 3.13.2-2 [509 kB] 115s Get:82 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 115s Get:83 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 115s Get:84 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-sphinxdoc all 8.1.3-5 [31.0 kB] 115s Get:85 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dev ppc64el 3.13.2-2 [26.7 kB] 115s Get:86 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libboost-python1.83-dev ppc64el 1.83.0-4.1ubuntu2 [345 kB] 115s Get:87 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libboost-python-dev ppc64el 1.83.0.2ubuntu1 [4520 B] 115s Get:88 http://ftpmaster.internal/ubuntu plucky/main ppc64el libboost-thread1.83.0 ppc64el 1.83.0-4.1ubuntu2 [281 kB] 115s Get:89 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libboost-timer1.83.0 ppc64el 1.83.0-4.1ubuntu2 [242 kB] 115s Get:90 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB] 115s Get:91 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB] 115s Get:92 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B] 115s Get:93 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo2 ppc64el 1.18.4-1 [746 kB] 115s Get:94 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo-gobject2 ppc64el 1.18.4-1 [128 kB] 115s Get:95 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libsz2 ppc64el 1.1.3-1 [5566 B] 115s Get:96 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-310 ppc64el 1.14.5+repack-3 [1523 kB] 115s Get:97 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libcbf1t64 ppc64el 0.9.7+dfsg1-5build1 [415 kB] 115s Get:98 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libccp4-data all 8.0.0-4 [65.2 kB] 115s Get:99 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libccp4c0t64 ppc64el 8.0.0-4 [118 kB] 115s Get:100 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libmmdb2-0 ppc64el 2.0.22-1 [441 kB] 115s Get:101 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libccp4f0t64 ppc64el 8.0.0-4 [216 kB] 116s Get:102 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libccp4-dev ppc64el 8.0.0-4 [42.4 kB] 116s Get:103 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el libcctbx0 ppc64el 2024.10+ds2+~3.22.1+ds1-4build2 [2145 kB] 116s Get:104 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el libcctbx-dev ppc64el 2024.10+ds2+~3.22.1+ds1-4build2 [1192 kB] 116s Get:105 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB] 116s Get:106 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcolord2 ppc64el 1.4.7-3 [162 kB] 116s Get:107 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcups2t64 ppc64el 2.4.11-0ubuntu2 [347 kB] 116s Get:108 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdatrie1 ppc64el 0.2.13-3build1 [22.7 kB] 116s Get:109 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libdouble-conversion3 ppc64el 3.3.1-1 [46.3 kB] 116s Get:110 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwayland-server0 ppc64el 1.23.1-3 [42.4 kB] 116s Get:111 http://ftpmaster.internal/ubuntu plucky/main ppc64el libx11-xcb1 ppc64el 2:1.8.10-2 [8008 B] 116s Get:112 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-dri3-0 ppc64el 1.17.0-2 [7842 B] 116s Get:113 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-present0 ppc64el 1.17.0-2 [6276 B] 116s Get:114 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-randr0 ppc64el 1.17.0-2 [19.1 kB] 116s Get:115 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-sync1 ppc64el 1.17.0-2 [9804 B] 116s Get:116 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-xfixes0 ppc64el 1.17.0-2 [10.7 kB] 116s Get:117 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxshmfence1 ppc64el 1.3-1build5 [4964 B] 116s Get:118 http://ftpmaster.internal/ubuntu plucky/main ppc64el mesa-libgallium ppc64el 25.0.1-2ubuntu2 [9547 kB] 117s Get:119 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgbm1 ppc64el 25.0.1-2ubuntu2 [39.1 kB] 117s Get:120 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwayland-client0 ppc64el 1.23.1-3 [31.7 kB] 117s Get:121 http://ftpmaster.internal/ubuntu plucky/main ppc64el libegl-mesa0 ppc64el 25.0.1-2ubuntu2 [152 kB] 117s Get:122 http://ftpmaster.internal/ubuntu plucky/main ppc64el libepoxy0 ppc64el 1.5.10-2 [234 kB] 117s Get:123 http://ftpmaster.internal/ubuntu plucky/main ppc64el libvulkan1 ppc64el 1.4.304.0-1 [163 kB] 117s Get:124 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgl1-mesa-dri ppc64el 25.0.1-2ubuntu2 [35.0 kB] 117s Get:125 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglvnd0 ppc64el 1.7.0-1build1 [72.4 kB] 117s Get:126 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-glx0 ppc64el 1.17.0-2 [26.3 kB] 117s Get:127 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxxf86vm1 ppc64el 1:1.1.4-1build4 [11.1 kB] 117s Get:128 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglx-mesa0 ppc64el 25.0.1-2ubuntu2 [175 kB] 117s Get:129 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglx0 ppc64el 1.7.0-1build1 [42.7 kB] 117s Get:130 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgl1 ppc64el 1.7.0-1build1 [107 kB] 117s Get:131 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libglew2.2 ppc64el 2.2.0-4build1 [186 kB] 117s Get:132 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libglut3.12 ppc64el 3.4.0-4 [131 kB] 117s Get:133 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 117s Get:134 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.2.0-1 [598 kB] 117s Get:135 http://ftpmaster.internal/ubuntu plucky/main ppc64el libthai-data all 0.1.29-2build1 [158 kB] 117s Get:136 http://ftpmaster.internal/ubuntu plucky/main ppc64el libthai0 ppc64el 0.1.29-2build1 [21.8 kB] 117s Get:137 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpango-1.0-0 ppc64el 1.56.3-1 [278 kB] 117s Get:138 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpangoft2-1.0-0 ppc64el 1.56.3-1 [58.9 kB] 117s Get:139 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpangocairo-1.0-0 ppc64el 1.56.3-1 [30.7 kB] 117s Get:140 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwayland-cursor0 ppc64el 1.23.1-3 [12.0 kB] 117s Get:141 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwayland-egl1 ppc64el 1.23.1-3 [6236 B] 117s Get:142 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcomposite1 ppc64el 1:0.4.6-1 [6816 B] 117s Get:143 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxfixes3 ppc64el 1:6.0.0-2build1 [11.8 kB] 117s Get:144 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcursor1 ppc64el 1:1.2.3-1 [27.4 kB] 117s Get:145 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxdamage1 ppc64el 1:1.1.6-1build1 [6550 B] 117s Get:146 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxinerama1 ppc64el 2:1.1.4-3build1 [6908 B] 117s Get:147 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrandr2 ppc64el 2:1.5.4-1 [21.7 kB] 117s Get:148 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgtk-3-common all 3.24.49-2ubuntu1 [1424 kB] 117s Get:149 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgtk-3-0t64 ppc64el 3.24.49-2ubuntu1 [3382 kB] 117s Get:150 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-hl-310 ppc64el 1.14.5+repack-3 [74.9 kB] 117s Get:151 http://ftpmaster.internal/ubuntu plucky/main ppc64el libice6 ppc64el 2:1.1.1-1 [49.9 kB] 117s Get:152 http://ftpmaster.internal/ubuntu plucky/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 117s Get:153 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwacom-common all 2.14.0-1 [103 kB] 117s Get:154 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwacom9 ppc64el 2.14.0-1 [32.5 kB] 117s Get:155 http://ftpmaster.internal/ubuntu plucky/main ppc64el libinput-bin ppc64el 1.27.1-1 [24.1 kB] 117s Get:156 http://ftpmaster.internal/ubuntu plucky/main ppc64el libmtdev1t64 ppc64el 1.1.7-1 [18.5 kB] 117s Get:157 http://ftpmaster.internal/ubuntu plucky/main ppc64el libinput10 ppc64el 1.27.1-1 [167 kB] 117s Get:158 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 117s Get:159 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB] 117s Get:160 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblzf1 ppc64el 3.6-4 [7920 B] 117s Get:161 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libmd4c0 ppc64el 0.5.2-2 [54.5 kB] 117s Get:162 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libnetcdf22 ppc64el 1:4.9.3-1 [639 kB] 117s Get:163 http://ftpmaster.internal/ubuntu plucky/main ppc64el libnotify4 ppc64el 0.8.4-1 [28.6 kB] 117s Get:164 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpcre2-16-0 ppc64el 10.45-1 [286 kB] 117s Get:165 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpcre2-32-0 ppc64el 10.45-1 [269 kB] 118s Get:166 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB] 118s Get:167 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5core5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [2188 kB] 118s Get:168 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5dbus5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [242 kB] 118s Get:169 http://ftpmaster.internal/ubuntu plucky/main ppc64el libegl1 ppc64el 1.7.0-1build1 [34.1 kB] 118s Get:170 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5network5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [808 kB] 118s Get:171 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsm6 ppc64el 2:1.2.4-1 [18.4 kB] 118s Get:172 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-icccm4 ppc64el 0.4.2-1 [11.4 kB] 118s Get:173 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-util1 ppc64el 0.4.1-1 [11.2 kB] 118s Get:174 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-image0 ppc64el 0.4.0-2build1 [12.4 kB] 118s Get:175 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-keysyms1 ppc64el 0.4.1-1 [9172 B] 118s Get:176 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render-util0 ppc64el 0.3.10-1 [11.5 kB] 118s Get:177 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shape0 ppc64el 1.17.0-2 [6310 B] 118s Get:178 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-xinerama0 ppc64el 1.17.0-2 [5524 B] 118s Get:179 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-xinput0 ppc64el 1.17.0-2 [36.9 kB] 118s Get:180 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-xkb1 ppc64el 1.17.0-2 [37.6 kB] 118s Get:181 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxkbcommon-x11-0 ppc64el 1.7.0-2 [15.3 kB] 118s Get:182 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5gui5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [4130 kB] 118s Get:183 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5widgets5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [2792 kB] 118s Get:184 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5xml5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [136 kB] 118s Get:185 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5designer5 ppc64el 5.15.15-6build1 [2915 kB] 118s Get:186 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5sql5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [134 kB] 118s Get:187 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5help5 ppc64el 5.15.15-6build1 [179 kB] 118s Get:188 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5opengl5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [164 kB] 118s Get:189 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5printsupport5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [222 kB] 118s Get:190 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5test5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [156 kB] 118s Get:191 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraqm0 ppc64el 0.10.2-1 [19.2 kB] 118s Get:192 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libssm2 ppc64el 1.4.0-2build1 [107 kB] 118s Get:193 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [14.6 kB] 118s Get:194 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [31.1 kB] 118s Get:195 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libwxbase3.2-1t64 ppc64el 3.2.6+dfsg-2ubuntu1 [1019 kB] 118s Get:196 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxtst6 ppc64el 2:1.2.5-1 [14.7 kB] 118s Get:197 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libwxgtk3.2-1t64 ppc64el 3.2.6+dfsg-2ubuntu1 [5177 kB] 118s Get:198 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libwxgtk-gl3.2-1t64 ppc64el 3.2.6+dfsg-2ubuntu1 [55.3 kB] 118s Get:199 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1ubuntu4 [191 kB] 118s Get:200 http://ftpmaster.internal/ubuntu plucky/universe ppc64el pymol-data all 3.1.0+dfsg-1 [1394 kB] 118s Get:201 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-matplotlib-data all 3.8.3-7build1 [2934 kB] 118s Get:202 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-all ppc64el 3.13.2-2 [884 B] 119s Get:203 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-brotli ppc64el 1.1.0-2build4 [422 kB] 119s Get:204 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-legacy-cgi all 2.6.2-1 [16.6 kB] 119s Get:205 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pycbf ppc64el 0.9.7+dfsg1-5build1 [172 kB] 119s Get:206 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-h5py-serial ppc64el 3.13.0-1 [1191 kB] 119s Get:207 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-h5py all 3.13.0-1 [7978 B] 119s Get:208 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-hdf5plugin all 5.0.0-1 [23.1 kB] 119s Get:209 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dateutil all 2.9.0-4 [80.3 kB] 119s Get:210 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.3-2 [248 kB] 119s Get:211 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pil ppc64el 11.1.0-5build1 [601 kB] 119s Get:212 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-tk ppc64el 3.13.2-2 [107 kB] 119s Get:213 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tk ppc64el 3.13.2-1 [9818 B] 119s Get:214 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pil.imagetk ppc64el 11.1.0-5build1 [10.3 kB] 119s Get:215 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-contourpy ppc64el 1.3.1-1build1 [218 kB] 119s Get:216 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-cycler all 0.12.1-1 [9716 B] 119s Get:217 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-platformdirs all 4.3.6-1 [16.8 kB] 119s Get:218 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fs all 2.4.16-7 [90.8 kB] 119s Get:219 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-lxml ppc64el 5.3.1-1build1 [1393 kB] 119s Get:220 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-lz4 ppc64el 4.4.0+dfsg-1build1 [28.1 kB] 119s Get:221 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 119s Get:222 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-scipy ppc64el 1.14.1-4ubuntu2 [19.4 MB] 121s Get:223 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB] 121s Get:224 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sympy all 1.13.3-5 [4229 kB] 121s Get:225 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 121s Get:226 http://ftpmaster.internal/ubuntu plucky/universe ppc64el unicode-data all 15.1.0-1 [8878 kB] 121s Get:227 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fonttools ppc64el 4.55.3-2build1 [1521 kB] 121s Get:228 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-kiwisolver ppc64el 1.4.7-3build1 [59.5 kB] 121s Get:229 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-packaging all 24.2-1 [51.5 kB] 121s Get:230 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-matplotlib ppc64el 3.8.3-7build1 [17.4 MB] 122s Get:231 http://ftpmaster.internal/ubuntu plucky/main ppc64el sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB] 122s Get:232 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-mrcfile all 1.5.4-2 [116 kB] 122s Get:233 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-natsort all 8.0.2-2 [33.8 kB] 122s Get:234 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-flexcache all 0.3-2 [13.4 kB] 123s Get:235 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-flexparser all 0.4-1 [43.8 kB] 123s Get:236 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pint all 0.24.4-1 [203 kB] 123s Get:237 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-nxmx all 0.0.4-1 [16.4 kB] 123s Get:238 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-ordered-set all 4.1.0-1 [9778 B] 123s Get:239 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-procrunner all 2.3.3-2 [12.0 kB] 123s Get:240 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopengl0 ppc64el 1.7.0-1build1 [35.5 kB] 123s Get:241 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglu1-mesa ppc64el 9.0.2-1.1build1 [276 kB] 123s Get:242 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-opengl all 3.1.9+dfsg-1syncable1 [631 kB] 123s Get:243 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyqt5.sip ppc64el 12.17.0-1build1 [80.9 kB] 123s Get:244 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyqt5 ppc64el 5.15.11+dfsg-2 [2650 kB] 123s Get:245 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyqt5.qtopengl ppc64el 5.15.11+dfsg-2 [118 kB] 123s Get:246 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pymol ppc64el 3.1.0+dfsg-1 [4268 kB] 123s Get:247 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-six all 1.17.0-1 [13.2 kB] 123s Get:248 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-tqdm all 4.67.1-2 [92.5 kB] 123s Get:249 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-wxgtk4.0 ppc64el 4.2.2+dfsg-3build1 [7919 kB] 124s Get:250 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el python3-cctbx ppc64el 2024.10+ds2+~3.22.1+ds1-4build2 [29.8 MB] 125s Get:251 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 125s Get:252 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pluggy all 1.5.0-1 [21.0 kB] 125s Get:253 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pytest all 8.3.5-1 [252 kB] 126s Fetched 255 MB in 16s (15.9 MB/s) 126s Selecting previously unselected package fonts-lato. 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 107156 files and directories currently installed.) 126s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 126s Unpacking fonts-lato (2.015-1) ... 126s Selecting previously unselected package python3-numpy-dev:ppc64el. 126s Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.3+ds-5_ppc64el.deb ... 126s Unpacking python3-numpy-dev:ppc64el (1:2.2.3+ds-5) ... 126s Selecting previously unselected package libblas3:ppc64el. 126s Preparing to unpack .../002-libblas3_3.12.1-2_ppc64el.deb ... 126s Unpacking libblas3:ppc64el (3.12.1-2) ... 126s Selecting previously unselected package libgfortran5:ppc64el. 126s Preparing to unpack .../003-libgfortran5_15-20250319-1ubuntu1_ppc64el.deb ... 126s Unpacking libgfortran5:ppc64el (15-20250319-1ubuntu1) ... 126s Selecting previously unselected package liblapack3:ppc64el. 126s Preparing to unpack .../004-liblapack3_3.12.1-2_ppc64el.deb ... 126s Unpacking liblapack3:ppc64el (3.12.1-2) ... 127s Selecting previously unselected package python3-numpy. 127s Preparing to unpack .../005-python3-numpy_1%3a2.2.3+ds-5_ppc64el.deb ... 127s Unpacking python3-numpy (1:2.2.3+ds-5) ... 127s Selecting previously unselected package libgdk-pixbuf2.0-common. 127s Preparing to unpack .../006-libgdk-pixbuf2.0-common_2.42.12+dfsg-2_all.deb ... 127s Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ... 127s Selecting previously unselected package libjpeg-turbo8:ppc64el. 127s Preparing to unpack .../007-libjpeg-turbo8_2.1.5-3ubuntu2_ppc64el.deb ... 127s Unpacking libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ... 127s Selecting previously unselected package libjpeg8:ppc64el. 127s Preparing to unpack .../008-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 127s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 127s Selecting previously unselected package libdeflate0:ppc64el. 127s Preparing to unpack .../009-libdeflate0_1.23-1_ppc64el.deb ... 127s Unpacking libdeflate0:ppc64el (1.23-1) ... 127s Selecting previously unselected package libjbig0:ppc64el. 127s Preparing to unpack .../010-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 127s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 127s Selecting previously unselected package liblerc4:ppc64el. 127s Preparing to unpack .../011-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ... 127s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 127s Selecting previously unselected package libsharpyuv0:ppc64el. 127s Preparing to unpack .../012-libsharpyuv0_1.5.0-0.1_ppc64el.deb ... 127s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1) ... 127s Selecting previously unselected package libwebp7:ppc64el. 127s Preparing to unpack .../013-libwebp7_1.5.0-0.1_ppc64el.deb ... 127s Unpacking libwebp7:ppc64el (1.5.0-0.1) ... 127s Selecting previously unselected package libtiff6:ppc64el. 127s Preparing to unpack .../014-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ... 127s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 127s Selecting previously unselected package libgdk-pixbuf-2.0-0:ppc64el. 127s Preparing to unpack .../015-libgdk-pixbuf-2.0-0_2.42.12+dfsg-2_ppc64el.deb ... 127s Unpacking libgdk-pixbuf-2.0-0:ppc64el (2.42.12+dfsg-2) ... 127s Selecting previously unselected package gtk-update-icon-cache. 127s Preparing to unpack .../016-gtk-update-icon-cache_4.18.2+ds-1_ppc64el.deb ... 127s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. 127s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. 127s Unpacking gtk-update-icon-cache (4.18.2+ds-1) ... 127s Selecting previously unselected package hicolor-icon-theme. 127s Preparing to unpack .../017-hicolor-icon-theme_0.18-2_all.deb ... 127s Unpacking hicolor-icon-theme (0.18-2) ... 127s Selecting previously unselected package adwaita-icon-theme. 127s Preparing to unpack .../018-adwaita-icon-theme_48.0-1_all.deb ... 127s Unpacking adwaita-icon-theme (48.0-1) ... 127s Selecting previously unselected package at-spi2-common. 127s Preparing to unpack .../019-at-spi2-common_2.56.0-2_all.deb ... 127s Unpacking at-spi2-common (2.56.0-2) ... 127s Selecting previously unselected package libtcl8.6:ppc64el. 127s Preparing to unpack .../020-libtcl8.6_8.6.16+dfsg-1_ppc64el.deb ... 127s Unpacking libtcl8.6:ppc64el (8.6.16+dfsg-1) ... 127s Selecting previously unselected package fonts-dejavu-mono. 127s Preparing to unpack .../021-fonts-dejavu-mono_2.37-8_all.deb ... 127s Unpacking fonts-dejavu-mono (2.37-8) ... 127s Selecting previously unselected package fonts-dejavu-core. 127s Preparing to unpack .../022-fonts-dejavu-core_2.37-8_all.deb ... 127s Unpacking fonts-dejavu-core (2.37-8) ... 127s Selecting previously unselected package fontconfig-config. 127s Preparing to unpack .../023-fontconfig-config_2.15.0-2.1ubuntu1_ppc64el.deb ... 128s Unpacking fontconfig-config (2.15.0-2.1ubuntu1) ... 128s Selecting previously unselected package libfontconfig1:ppc64el. 128s Preparing to unpack .../024-libfontconfig1_2.15.0-2.1ubuntu1_ppc64el.deb ... 128s Unpacking libfontconfig1:ppc64el (2.15.0-2.1ubuntu1) ... 128s Selecting previously unselected package libxrender1:ppc64el. 128s Preparing to unpack .../025-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 128s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 128s Selecting previously unselected package libxft2:ppc64el. 128s Preparing to unpack .../026-libxft2_2.3.6-1build1_ppc64el.deb ... 128s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 128s Selecting previously unselected package x11-common. 128s Preparing to unpack .../027-x11-common_1%3a7.7+23ubuntu3_all.deb ... 128s Unpacking x11-common (1:7.7+23ubuntu3) ... 128s Selecting previously unselected package libxss1:ppc64el. 128s Preparing to unpack .../028-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 128s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 128s Selecting previously unselected package libtk8.6:ppc64el. 128s Preparing to unpack .../029-libtk8.6_8.6.16-1_ppc64el.deb ... 128s Unpacking libtk8.6:ppc64el (8.6.16-1) ... 128s Selecting previously unselected package tk8.6-blt2.5. 128s Preparing to unpack .../030-tk8.6-blt2.5_2.5.3+dfsg-8_ppc64el.deb ... 128s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 128s Selecting previously unselected package blt. 128s Preparing to unpack .../031-blt_2.5.3+dfsg-8_ppc64el.deb ... 128s Unpacking blt (2.5.3+dfsg-8) ... 128s Selecting previously unselected package libisl23:ppc64el. 128s Preparing to unpack .../032-libisl23_0.27-1_ppc64el.deb ... 128s Unpacking libisl23:ppc64el (0.27-1) ... 128s Selecting previously unselected package libmpc3:ppc64el. 128s Preparing to unpack .../033-libmpc3_1.3.1-1build2_ppc64el.deb ... 128s Unpacking libmpc3:ppc64el (1.3.1-1build2) ... 128s Selecting previously unselected package cpp-14-powerpc64le-linux-gnu. 128s Preparing to unpack .../034-cpp-14-powerpc64le-linux-gnu_14.2.0-19ubuntu1_ppc64el.deb ... 128s Unpacking cpp-14-powerpc64le-linux-gnu (14.2.0-19ubuntu1) ... 128s Selecting previously unselected package cpp-14. 128s Preparing to unpack .../035-cpp-14_14.2.0-19ubuntu1_ppc64el.deb ... 128s Unpacking cpp-14 (14.2.0-19ubuntu1) ... 128s Selecting previously unselected package cpp-powerpc64le-linux-gnu. 128s Preparing to unpack .../036-cpp-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 128s Unpacking cpp-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 128s Selecting previously unselected package cpp. 128s Preparing to unpack .../037-cpp_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 128s Unpacking cpp (4:14.2.0-1ubuntu1) ... 128s Selecting previously unselected package libdconf1:ppc64el. 128s Preparing to unpack .../038-libdconf1_0.40.0-5_ppc64el.deb ... 128s Unpacking libdconf1:ppc64el (0.40.0-5) ... 128s Selecting previously unselected package dconf-service. 128s Preparing to unpack .../039-dconf-service_0.40.0-5_ppc64el.deb ... 128s Unpacking dconf-service (0.40.0-5) ... 128s Selecting previously unselected package dconf-gsettings-backend:ppc64el. 128s Preparing to unpack .../040-dconf-gsettings-backend_0.40.0-5_ppc64el.deb ... 128s Unpacking dconf-gsettings-backend:ppc64el (0.40.0-5) ... 128s Selecting previously unselected package fontconfig. 128s Preparing to unpack .../041-fontconfig_2.15.0-2.1ubuntu1_ppc64el.deb ... 128s Unpacking fontconfig (2.15.0-2.1ubuntu1) ... 128s Selecting previously unselected package fonts-font-awesome. 128s Preparing to unpack .../042-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 128s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 128s Selecting previously unselected package fonts-lyx. 128s Preparing to unpack .../043-fonts-lyx_2.4.3-1_all.deb ... 128s Unpacking fonts-lyx (2.4.3-1) ... 128s Selecting previously unselected package libcc1-0:ppc64el. 128s Preparing to unpack .../044-libcc1-0_15-20250319-1ubuntu1_ppc64el.deb ... 128s Unpacking libcc1-0:ppc64el (15-20250319-1ubuntu1) ... 128s Selecting previously unselected package libgomp1:ppc64el. 128s Preparing to unpack .../045-libgomp1_15-20250319-1ubuntu1_ppc64el.deb ... 128s Unpacking libgomp1:ppc64el (15-20250319-1ubuntu1) ... 128s Selecting previously unselected package libitm1:ppc64el. 128s Preparing to unpack .../046-libitm1_15-20250319-1ubuntu1_ppc64el.deb ... 128s Unpacking libitm1:ppc64el (15-20250319-1ubuntu1) ... 128s Selecting previously unselected package libasan8:ppc64el. 128s Preparing to unpack .../047-libasan8_15-20250319-1ubuntu1_ppc64el.deb ... 128s Unpacking libasan8:ppc64el (15-20250319-1ubuntu1) ... 129s Selecting previously unselected package liblsan0:ppc64el. 129s Preparing to unpack .../048-liblsan0_15-20250319-1ubuntu1_ppc64el.deb ... 129s Unpacking liblsan0:ppc64el (15-20250319-1ubuntu1) ... 129s Selecting previously unselected package libtsan2:ppc64el. 129s Preparing to unpack .../049-libtsan2_15-20250319-1ubuntu1_ppc64el.deb ... 129s Unpacking libtsan2:ppc64el (15-20250319-1ubuntu1) ... 129s Selecting previously unselected package libubsan1:ppc64el. 129s Preparing to unpack .../050-libubsan1_15-20250319-1ubuntu1_ppc64el.deb ... 129s Unpacking libubsan1:ppc64el (15-20250319-1ubuntu1) ... 129s Selecting previously unselected package libquadmath0:ppc64el. 129s Preparing to unpack .../051-libquadmath0_15-20250319-1ubuntu1_ppc64el.deb ... 129s Unpacking libquadmath0:ppc64el (15-20250319-1ubuntu1) ... 129s Selecting previously unselected package libgcc-14-dev:ppc64el. 129s Preparing to unpack .../052-libgcc-14-dev_14.2.0-19ubuntu1_ppc64el.deb ... 129s Unpacking libgcc-14-dev:ppc64el (14.2.0-19ubuntu1) ... 129s Selecting previously unselected package gcc-14-powerpc64le-linux-gnu. 129s Preparing to unpack .../053-gcc-14-powerpc64le-linux-gnu_14.2.0-19ubuntu1_ppc64el.deb ... 129s Unpacking gcc-14-powerpc64le-linux-gnu (14.2.0-19ubuntu1) ... 129s Selecting previously unselected package gcc-14. 129s Preparing to unpack .../054-gcc-14_14.2.0-19ubuntu1_ppc64el.deb ... 129s Unpacking gcc-14 (14.2.0-19ubuntu1) ... 129s Selecting previously unselected package gcc-powerpc64le-linux-gnu. 129s Preparing to unpack .../055-gcc-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 129s Unpacking gcc-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 129s Selecting previously unselected package gcc. 129s Preparing to unpack .../056-gcc_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 129s Unpacking gcc (4:14.2.0-1ubuntu1) ... 129s Selecting previously unselected package libstdc++-14-dev:ppc64el. 129s Preparing to unpack .../057-libstdc++-14-dev_14.2.0-19ubuntu1_ppc64el.deb ... 129s Unpacking libstdc++-14-dev:ppc64el (14.2.0-19ubuntu1) ... 129s Selecting previously unselected package g++-14-powerpc64le-linux-gnu. 129s Preparing to unpack .../058-g++-14-powerpc64le-linux-gnu_14.2.0-19ubuntu1_ppc64el.deb ... 129s Unpacking g++-14-powerpc64le-linux-gnu (14.2.0-19ubuntu1) ... 130s Selecting previously unselected package g++-14. 130s Preparing to unpack .../059-g++-14_14.2.0-19ubuntu1_ppc64el.deb ... 130s Unpacking g++-14 (14.2.0-19ubuntu1) ... 130s Selecting previously unselected package g++-powerpc64le-linux-gnu. 130s Preparing to unpack .../060-g++-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 130s Unpacking g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 130s Selecting previously unselected package g++. 130s Preparing to unpack .../061-g++_4%3a14.2.0-1ubuntu1_ppc64el.deb ... 130s Unpacking g++ (4:14.2.0-1ubuntu1) ... 130s Selecting previously unselected package libaec0:ppc64el. 130s Preparing to unpack .../062-libaec0_1.1.3-1_ppc64el.deb ... 130s Unpacking libaec0:ppc64el (1.1.3-1) ... 130s Selecting previously unselected package libann-cctbx0. 130s Preparing to unpack .../063-libann-cctbx0_1.1.2+doc-9build1_ppc64el.deb ... 130s Unpacking libann-cctbx0 (1.1.2+doc-9build1) ... 130s Selecting previously unselected package libann-cctbx-dev. 130s Preparing to unpack .../064-libann-cctbx-dev_1.1.2+doc-9build1_ppc64el.deb ... 130s Unpacking libann-cctbx-dev (1.1.2+doc-9build1) ... 130s Selecting previously unselected package libantlr3c-3.4-0:ppc64el. 130s Preparing to unpack .../065-libantlr3c-3.4-0_3.4+dfsg-4build2_ppc64el.deb ... 130s Unpacking libantlr3c-3.4-0:ppc64el (3.4+dfsg-4build2) ... 130s Selecting previously unselected package libatk1.0-0t64:ppc64el. 130s Preparing to unpack .../066-libatk1.0-0t64_2.56.0-2_ppc64el.deb ... 130s Unpacking libatk1.0-0t64:ppc64el (2.56.0-2) ... 130s Selecting previously unselected package libxi6:ppc64el. 130s Preparing to unpack .../067-libxi6_2%3a1.8.2-1_ppc64el.deb ... 130s Unpacking libxi6:ppc64el (2:1.8.2-1) ... 130s Selecting previously unselected package libatspi2.0-0t64:ppc64el. 130s Preparing to unpack .../068-libatspi2.0-0t64_2.56.0-2_ppc64el.deb ... 130s Unpacking libatspi2.0-0t64:ppc64el (2.56.0-2) ... 130s Selecting previously unselected package libatk-bridge2.0-0t64:ppc64el. 130s Preparing to unpack .../069-libatk-bridge2.0-0t64_2.56.0-2_ppc64el.deb ... 130s Unpacking libatk-bridge2.0-0t64:ppc64el (2.56.0-2) ... 130s Selecting previously unselected package libavahi-common-data:ppc64el. 130s Preparing to unpack .../070-libavahi-common-data_0.8-16ubuntu2_ppc64el.deb ... 130s Unpacking libavahi-common-data:ppc64el (0.8-16ubuntu2) ... 130s Selecting previously unselected package libavahi-common3:ppc64el. 130s Preparing to unpack .../071-libavahi-common3_0.8-16ubuntu2_ppc64el.deb ... 130s Unpacking libavahi-common3:ppc64el (0.8-16ubuntu2) ... 130s Selecting previously unselected package libavahi-client3:ppc64el. 130s Preparing to unpack .../072-libavahi-client3_0.8-16ubuntu2_ppc64el.deb ... 130s Unpacking libavahi-client3:ppc64el (0.8-16ubuntu2) ... 130s Selecting previously unselected package libboost-python1.83.0. 130s Preparing to unpack .../073-libboost-python1.83.0_1.83.0-4.1ubuntu2_ppc64el.deb ... 130s Unpacking libboost-python1.83.0 (1.83.0-4.1ubuntu2) ... 130s Selecting previously unselected package libboost-numpy1.83.0. 130s Preparing to unpack .../074-libboost-numpy1.83.0_1.83.0-4.1ubuntu2_ppc64el.deb ... 130s Unpacking libboost-numpy1.83.0 (1.83.0-4.1ubuntu2) ... 130s Selecting previously unselected package libboost1.83-dev:ppc64el. 130s Preparing to unpack .../075-libboost1.83-dev_1.83.0-4.1ubuntu2_ppc64el.deb ... 130s Unpacking libboost1.83-dev:ppc64el (1.83.0-4.1ubuntu2) ... 132s Selecting previously unselected package libexpat1-dev:ppc64el. 132s Preparing to unpack .../076-libexpat1-dev_2.6.4-1_ppc64el.deb ... 132s Unpacking libexpat1-dev:ppc64el (2.6.4-1) ... 132s Selecting previously unselected package zlib1g-dev:ppc64el. 132s Preparing to unpack .../077-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_ppc64el.deb ... 132s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 132s Selecting previously unselected package libpython3.13-dev:ppc64el. 132s Preparing to unpack .../078-libpython3.13-dev_3.13.2-2_ppc64el.deb ... 132s Unpacking libpython3.13-dev:ppc64el (3.13.2-2) ... 132s Selecting previously unselected package libpython3-dev:ppc64el. 132s Preparing to unpack .../079-libpython3-dev_3.13.2-2_ppc64el.deb ... 132s Unpacking libpython3-dev:ppc64el (3.13.2-2) ... 132s Selecting previously unselected package python3.13-dev. 132s Preparing to unpack .../080-python3.13-dev_3.13.2-2_ppc64el.deb ... 132s Unpacking python3.13-dev (3.13.2-2) ... 132s Selecting previously unselected package libjs-jquery. 132s Preparing to unpack .../081-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 132s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 132s Selecting previously unselected package libjs-underscore. 132s Preparing to unpack .../082-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 132s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 132s Selecting previously unselected package libjs-sphinxdoc. 132s Preparing to unpack .../083-libjs-sphinxdoc_8.1.3-5_all.deb ... 132s Unpacking libjs-sphinxdoc (8.1.3-5) ... 132s Selecting previously unselected package python3-dev. 132s Preparing to unpack .../084-python3-dev_3.13.2-2_ppc64el.deb ... 132s Unpacking python3-dev (3.13.2-2) ... 133s Selecting previously unselected package libboost-python1.83-dev. 133s Preparing to unpack .../085-libboost-python1.83-dev_1.83.0-4.1ubuntu2_ppc64el.deb ... 133s Unpacking libboost-python1.83-dev (1.83.0-4.1ubuntu2) ... 133s Selecting previously unselected package libboost-python-dev. 133s Preparing to unpack .../086-libboost-python-dev_1.83.0.2ubuntu1_ppc64el.deb ... 133s Unpacking libboost-python-dev (1.83.0.2ubuntu1) ... 133s Selecting previously unselected package libboost-thread1.83.0:ppc64el. 133s Preparing to unpack .../087-libboost-thread1.83.0_1.83.0-4.1ubuntu2_ppc64el.deb ... 133s Unpacking libboost-thread1.83.0:ppc64el (1.83.0-4.1ubuntu2) ... 133s Selecting previously unselected package libboost-timer1.83.0:ppc64el. 133s Preparing to unpack .../088-libboost-timer1.83.0_1.83.0-4.1ubuntu2_ppc64el.deb ... 133s Unpacking libboost-timer1.83.0:ppc64el (1.83.0-4.1ubuntu2) ... 133s Selecting previously unselected package libpixman-1-0:ppc64el. 133s Preparing to unpack .../089-libpixman-1-0_0.44.0-3_ppc64el.deb ... 133s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ... 133s Selecting previously unselected package libxcb-render0:ppc64el. 133s Preparing to unpack .../090-libxcb-render0_1.17.0-2_ppc64el.deb ... 133s Unpacking libxcb-render0:ppc64el (1.17.0-2) ... 133s Selecting previously unselected package libxcb-shm0:ppc64el. 133s Preparing to unpack .../091-libxcb-shm0_1.17.0-2_ppc64el.deb ... 133s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ... 133s Selecting previously unselected package libcairo2:ppc64el. 133s Preparing to unpack .../092-libcairo2_1.18.4-1_ppc64el.deb ... 133s Unpacking libcairo2:ppc64el (1.18.4-1) ... 133s Selecting previously unselected package libcairo-gobject2:ppc64el. 133s Preparing to unpack .../093-libcairo-gobject2_1.18.4-1_ppc64el.deb ... 133s Unpacking libcairo-gobject2:ppc64el (1.18.4-1) ... 133s Selecting previously unselected package libsz2:ppc64el. 133s Preparing to unpack .../094-libsz2_1.1.3-1_ppc64el.deb ... 133s Unpacking libsz2:ppc64el (1.1.3-1) ... 133s Selecting previously unselected package libhdf5-310:ppc64el. 133s Preparing to unpack .../095-libhdf5-310_1.14.5+repack-3_ppc64el.deb ... 133s Unpacking libhdf5-310:ppc64el (1.14.5+repack-3) ... 133s Selecting previously unselected package libcbf1t64:ppc64el. 133s Preparing to unpack .../096-libcbf1t64_0.9.7+dfsg1-5build1_ppc64el.deb ... 133s Unpacking libcbf1t64:ppc64el (0.9.7+dfsg1-5build1) ... 133s Selecting previously unselected package libccp4-data. 133s Preparing to unpack .../097-libccp4-data_8.0.0-4_all.deb ... 133s Unpacking libccp4-data (8.0.0-4) ... 133s Selecting previously unselected package libccp4c0t64:ppc64el. 133s Preparing to unpack .../098-libccp4c0t64_8.0.0-4_ppc64el.deb ... 133s Unpacking libccp4c0t64:ppc64el (8.0.0-4) ... 133s Selecting previously unselected package libmmdb2-0:ppc64el. 133s Preparing to unpack .../099-libmmdb2-0_2.0.22-1_ppc64el.deb ... 133s Unpacking libmmdb2-0:ppc64el (2.0.22-1) ... 133s Selecting previously unselected package libccp4f0t64:ppc64el. 133s Preparing to unpack .../100-libccp4f0t64_8.0.0-4_ppc64el.deb ... 133s Unpacking libccp4f0t64:ppc64el (8.0.0-4) ... 133s Selecting previously unselected package libccp4-dev:ppc64el. 133s Preparing to unpack .../101-libccp4-dev_8.0.0-4_ppc64el.deb ... 133s Unpacking libccp4-dev:ppc64el (8.0.0-4) ... 133s Selecting previously unselected package libcctbx0. 133s Preparing to unpack .../102-libcctbx0_2024.10+ds2+~3.22.1+ds1-4build2_ppc64el.deb ... 133s Unpacking libcctbx0 (2024.10+ds2+~3.22.1+ds1-4build2) ... 133s Selecting previously unselected package libcctbx-dev. 133s Preparing to unpack .../103-libcctbx-dev_2024.10+ds2+~3.22.1+ds1-4build2_ppc64el.deb ... 133s Unpacking libcctbx-dev (2024.10+ds2+~3.22.1+ds1-4build2) ... 133s Selecting previously unselected package liblcms2-2:ppc64el. 133s Preparing to unpack .../104-liblcms2-2_2.16-2_ppc64el.deb ... 133s Unpacking liblcms2-2:ppc64el (2.16-2) ... 133s Selecting previously unselected package libcolord2:ppc64el. 133s Preparing to unpack .../105-libcolord2_1.4.7-3_ppc64el.deb ... 133s Unpacking libcolord2:ppc64el (1.4.7-3) ... 133s Selecting previously unselected package libcups2t64:ppc64el. 133s Preparing to unpack .../106-libcups2t64_2.4.11-0ubuntu2_ppc64el.deb ... 133s Unpacking libcups2t64:ppc64el (2.4.11-0ubuntu2) ... 133s Selecting previously unselected package libdatrie1:ppc64el. 133s Preparing to unpack .../107-libdatrie1_0.2.13-3build1_ppc64el.deb ... 133s Unpacking libdatrie1:ppc64el (0.2.13-3build1) ... 133s Selecting previously unselected package libdouble-conversion3:ppc64el. 133s Preparing to unpack .../108-libdouble-conversion3_3.3.1-1_ppc64el.deb ... 133s Unpacking libdouble-conversion3:ppc64el (3.3.1-1) ... 133s Selecting previously unselected package libwayland-server0:ppc64el. 133s Preparing to unpack .../109-libwayland-server0_1.23.1-3_ppc64el.deb ... 133s Unpacking libwayland-server0:ppc64el (1.23.1-3) ... 133s Selecting previously unselected package libx11-xcb1:ppc64el. 133s Preparing to unpack .../110-libx11-xcb1_2%3a1.8.10-2_ppc64el.deb ... 133s Unpacking libx11-xcb1:ppc64el (2:1.8.10-2) ... 133s Selecting previously unselected package libxcb-dri3-0:ppc64el. 133s Preparing to unpack .../111-libxcb-dri3-0_1.17.0-2_ppc64el.deb ... 133s Unpacking libxcb-dri3-0:ppc64el (1.17.0-2) ... 133s Selecting previously unselected package libxcb-present0:ppc64el. 133s Preparing to unpack .../112-libxcb-present0_1.17.0-2_ppc64el.deb ... 133s Unpacking libxcb-present0:ppc64el (1.17.0-2) ... 133s Selecting previously unselected package libxcb-randr0:ppc64el. 133s Preparing to unpack .../113-libxcb-randr0_1.17.0-2_ppc64el.deb ... 133s Unpacking libxcb-randr0:ppc64el (1.17.0-2) ... 133s Selecting previously unselected package libxcb-sync1:ppc64el. 133s Preparing to unpack .../114-libxcb-sync1_1.17.0-2_ppc64el.deb ... 133s Unpacking libxcb-sync1:ppc64el (1.17.0-2) ... 134s Selecting previously unselected package libxcb-xfixes0:ppc64el. 134s Preparing to unpack .../115-libxcb-xfixes0_1.17.0-2_ppc64el.deb ... 134s Unpacking libxcb-xfixes0:ppc64el (1.17.0-2) ... 134s Selecting previously unselected package libxshmfence1:ppc64el. 134s Preparing to unpack .../116-libxshmfence1_1.3-1build5_ppc64el.deb ... 134s Unpacking libxshmfence1:ppc64el (1.3-1build5) ... 134s Selecting previously unselected package mesa-libgallium:ppc64el. 134s Preparing to unpack .../117-mesa-libgallium_25.0.1-2ubuntu2_ppc64el.deb ... 134s Unpacking mesa-libgallium:ppc64el (25.0.1-2ubuntu2) ... 134s Selecting previously unselected package libgbm1:ppc64el. 134s Preparing to unpack .../118-libgbm1_25.0.1-2ubuntu2_ppc64el.deb ... 134s Unpacking libgbm1:ppc64el (25.0.1-2ubuntu2) ... 134s Selecting previously unselected package libwayland-client0:ppc64el. 134s Preparing to unpack .../119-libwayland-client0_1.23.1-3_ppc64el.deb ... 134s Unpacking libwayland-client0:ppc64el (1.23.1-3) ... 134s Selecting previously unselected package libegl-mesa0:ppc64el. 134s Preparing to unpack .../120-libegl-mesa0_25.0.1-2ubuntu2_ppc64el.deb ... 134s Unpacking libegl-mesa0:ppc64el (25.0.1-2ubuntu2) ... 134s Selecting previously unselected package libepoxy0:ppc64el. 134s Preparing to unpack .../121-libepoxy0_1.5.10-2_ppc64el.deb ... 134s Unpacking libepoxy0:ppc64el (1.5.10-2) ... 134s Selecting previously unselected package libvulkan1:ppc64el. 134s Preparing to unpack .../122-libvulkan1_1.4.304.0-1_ppc64el.deb ... 134s Unpacking libvulkan1:ppc64el (1.4.304.0-1) ... 134s Selecting previously unselected package libgl1-mesa-dri:ppc64el. 134s Preparing to unpack .../123-libgl1-mesa-dri_25.0.1-2ubuntu2_ppc64el.deb ... 134s Unpacking libgl1-mesa-dri:ppc64el (25.0.1-2ubuntu2) ... 134s Selecting previously unselected package libglvnd0:ppc64el. 134s Preparing to unpack .../124-libglvnd0_1.7.0-1build1_ppc64el.deb ... 134s Unpacking libglvnd0:ppc64el (1.7.0-1build1) ... 134s Selecting previously unselected package libxcb-glx0:ppc64el. 134s Preparing to unpack .../125-libxcb-glx0_1.17.0-2_ppc64el.deb ... 134s Unpacking libxcb-glx0:ppc64el (1.17.0-2) ... 134s Selecting previously unselected package libxxf86vm1:ppc64el. 134s Preparing to unpack .../126-libxxf86vm1_1%3a1.1.4-1build4_ppc64el.deb ... 134s Unpacking libxxf86vm1:ppc64el (1:1.1.4-1build4) ... 134s Selecting previously unselected package libglx-mesa0:ppc64el. 134s Preparing to unpack .../127-libglx-mesa0_25.0.1-2ubuntu2_ppc64el.deb ... 134s Unpacking libglx-mesa0:ppc64el (25.0.1-2ubuntu2) ... 134s Selecting previously unselected package libglx0:ppc64el. 134s Preparing to unpack .../128-libglx0_1.7.0-1build1_ppc64el.deb ... 134s Unpacking libglx0:ppc64el (1.7.0-1build1) ... 134s Selecting previously unselected package libgl1:ppc64el. 134s Preparing to unpack .../129-libgl1_1.7.0-1build1_ppc64el.deb ... 134s Unpacking libgl1:ppc64el (1.7.0-1build1) ... 134s Selecting previously unselected package libglew2.2:ppc64el. 134s Preparing to unpack .../130-libglew2.2_2.2.0-4build1_ppc64el.deb ... 134s Unpacking libglew2.2:ppc64el (2.2.0-4build1) ... 134s Selecting previously unselected package libglut3.12:ppc64el. 134s Preparing to unpack .../131-libglut3.12_3.4.0-4_ppc64el.deb ... 134s Unpacking libglut3.12:ppc64el (3.4.0-4) ... 134s Selecting previously unselected package libgraphite2-3:ppc64el. 134s Preparing to unpack .../132-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 134s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 134s Selecting previously unselected package libharfbuzz0b:ppc64el. 134s Preparing to unpack .../133-libharfbuzz0b_10.2.0-1_ppc64el.deb ... 134s Unpacking libharfbuzz0b:ppc64el (10.2.0-1) ... 134s Selecting previously unselected package libthai-data. 134s Preparing to unpack .../134-libthai-data_0.1.29-2build1_all.deb ... 134s Unpacking libthai-data (0.1.29-2build1) ... 134s Selecting previously unselected package libthai0:ppc64el. 134s Preparing to unpack .../135-libthai0_0.1.29-2build1_ppc64el.deb ... 134s Unpacking libthai0:ppc64el (0.1.29-2build1) ... 134s Selecting previously unselected package libpango-1.0-0:ppc64el. 134s Preparing to unpack .../136-libpango-1.0-0_1.56.3-1_ppc64el.deb ... 134s Unpacking libpango-1.0-0:ppc64el (1.56.3-1) ... 134s Selecting previously unselected package libpangoft2-1.0-0:ppc64el. 134s Preparing to unpack .../137-libpangoft2-1.0-0_1.56.3-1_ppc64el.deb ... 134s Unpacking libpangoft2-1.0-0:ppc64el (1.56.3-1) ... 134s Selecting previously unselected package libpangocairo-1.0-0:ppc64el. 134s Preparing to unpack .../138-libpangocairo-1.0-0_1.56.3-1_ppc64el.deb ... 134s Unpacking libpangocairo-1.0-0:ppc64el (1.56.3-1) ... 134s Selecting previously unselected package libwayland-cursor0:ppc64el. 134s Preparing to unpack .../139-libwayland-cursor0_1.23.1-3_ppc64el.deb ... 134s Unpacking libwayland-cursor0:ppc64el (1.23.1-3) ... 134s Selecting previously unselected package libwayland-egl1:ppc64el. 134s Preparing to unpack .../140-libwayland-egl1_1.23.1-3_ppc64el.deb ... 134s Unpacking libwayland-egl1:ppc64el (1.23.1-3) ... 134s Selecting previously unselected package libxcomposite1:ppc64el. 134s Preparing to unpack .../141-libxcomposite1_1%3a0.4.6-1_ppc64el.deb ... 134s Unpacking libxcomposite1:ppc64el (1:0.4.6-1) ... 134s Selecting previously unselected package libxfixes3:ppc64el. 134s Preparing to unpack .../142-libxfixes3_1%3a6.0.0-2build1_ppc64el.deb ... 134s Unpacking libxfixes3:ppc64el (1:6.0.0-2build1) ... 134s Selecting previously unselected package libxcursor1:ppc64el. 134s Preparing to unpack .../143-libxcursor1_1%3a1.2.3-1_ppc64el.deb ... 134s Unpacking libxcursor1:ppc64el (1:1.2.3-1) ... 134s Selecting previously unselected package libxdamage1:ppc64el. 134s Preparing to unpack .../144-libxdamage1_1%3a1.1.6-1build1_ppc64el.deb ... 134s Unpacking libxdamage1:ppc64el (1:1.1.6-1build1) ... 135s Selecting previously unselected package libxinerama1:ppc64el. 135s Preparing to unpack .../145-libxinerama1_2%3a1.1.4-3build1_ppc64el.deb ... 135s Unpacking libxinerama1:ppc64el (2:1.1.4-3build1) ... 135s Selecting previously unselected package libxrandr2:ppc64el. 135s Preparing to unpack .../146-libxrandr2_2%3a1.5.4-1_ppc64el.deb ... 135s Unpacking libxrandr2:ppc64el (2:1.5.4-1) ... 135s Selecting previously unselected package libgtk-3-common. 135s Preparing to unpack .../147-libgtk-3-common_3.24.49-2ubuntu1_all.deb ... 135s Unpacking libgtk-3-common (3.24.49-2ubuntu1) ... 135s Selecting previously unselected package libgtk-3-0t64:ppc64el. 135s Preparing to unpack .../148-libgtk-3-0t64_3.24.49-2ubuntu1_ppc64el.deb ... 135s Unpacking libgtk-3-0t64:ppc64el (3.24.49-2ubuntu1) ... 135s Selecting previously unselected package libhdf5-hl-310:ppc64el. 135s Preparing to unpack .../149-libhdf5-hl-310_1.14.5+repack-3_ppc64el.deb ... 135s Unpacking libhdf5-hl-310:ppc64el (1.14.5+repack-3) ... 135s Selecting previously unselected package libice6:ppc64el. 135s Preparing to unpack .../150-libice6_2%3a1.1.1-1_ppc64el.deb ... 135s Unpacking libice6:ppc64el (2:1.1.1-1) ... 135s Selecting previously unselected package libimagequant0:ppc64el. 135s Preparing to unpack .../151-libimagequant0_2.18.0-1build1_ppc64el.deb ... 135s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 135s Selecting previously unselected package libwacom-common. 135s Preparing to unpack .../152-libwacom-common_2.14.0-1_all.deb ... 135s Unpacking libwacom-common (2.14.0-1) ... 135s Selecting previously unselected package libwacom9:ppc64el. 135s Preparing to unpack .../153-libwacom9_2.14.0-1_ppc64el.deb ... 135s Unpacking libwacom9:ppc64el (2.14.0-1) ... 135s Selecting previously unselected package libinput-bin. 135s Preparing to unpack .../154-libinput-bin_1.27.1-1_ppc64el.deb ... 135s Unpacking libinput-bin (1.27.1-1) ... 135s Selecting previously unselected package libmtdev1t64:ppc64el. 135s Preparing to unpack .../155-libmtdev1t64_1.1.7-1_ppc64el.deb ... 135s Unpacking libmtdev1t64:ppc64el (1.1.7-1) ... 135s Selecting previously unselected package libinput10:ppc64el. 135s Preparing to unpack .../156-libinput10_1.27.1-1_ppc64el.deb ... 135s Unpacking libinput10:ppc64el (1.27.1-1) ... 135s Selecting previously unselected package libjs-jquery-ui. 135s Preparing to unpack .../157-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 135s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 135s Selecting previously unselected package liblbfgsb0:ppc64el. 135s Preparing to unpack .../158-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ... 135s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 135s Selecting previously unselected package liblzf1:ppc64el. 135s Preparing to unpack .../159-liblzf1_3.6-4_ppc64el.deb ... 135s Unpacking liblzf1:ppc64el (3.6-4) ... 135s Selecting previously unselected package libmd4c0:ppc64el. 135s Preparing to unpack .../160-libmd4c0_0.5.2-2_ppc64el.deb ... 135s Unpacking libmd4c0:ppc64el (0.5.2-2) ... 135s Selecting previously unselected package libnetcdf22:ppc64el. 135s Preparing to unpack .../161-libnetcdf22_1%3a4.9.3-1_ppc64el.deb ... 135s Unpacking libnetcdf22:ppc64el (1:4.9.3-1) ... 135s Selecting previously unselected package libnotify4:ppc64el. 135s Preparing to unpack .../162-libnotify4_0.8.4-1_ppc64el.deb ... 135s Unpacking libnotify4:ppc64el (0.8.4-1) ... 135s Selecting previously unselected package libpcre2-16-0:ppc64el. 135s Preparing to unpack .../163-libpcre2-16-0_10.45-1_ppc64el.deb ... 135s Unpacking libpcre2-16-0:ppc64el (10.45-1) ... 135s Selecting previously unselected package libpcre2-32-0:ppc64el. 135s Preparing to unpack .../164-libpcre2-32-0_10.45-1_ppc64el.deb ... 135s Unpacking libpcre2-32-0:ppc64el (10.45-1) ... 135s Selecting previously unselected package libqhull-r8.0:ppc64el. 135s Preparing to unpack .../165-libqhull-r8.0_2020.2-6build1_ppc64el.deb ... 135s Unpacking libqhull-r8.0:ppc64el (2020.2-6build1) ... 135s Selecting previously unselected package libqt5core5t64:ppc64el. 135s Preparing to unpack .../166-libqt5core5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ... 135s Unpacking libqt5core5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 135s Selecting previously unselected package libqt5dbus5t64:ppc64el. 135s Preparing to unpack .../167-libqt5dbus5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ... 135s Unpacking libqt5dbus5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 135s Selecting previously unselected package libegl1:ppc64el. 135s Preparing to unpack .../168-libegl1_1.7.0-1build1_ppc64el.deb ... 135s Unpacking libegl1:ppc64el (1.7.0-1build1) ... 135s Selecting previously unselected package libqt5network5t64:ppc64el. 135s Preparing to unpack .../169-libqt5network5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ... 135s Unpacking libqt5network5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 136s Selecting previously unselected package libsm6:ppc64el. 136s Preparing to unpack .../170-libsm6_2%3a1.2.4-1_ppc64el.deb ... 136s Unpacking libsm6:ppc64el (2:1.2.4-1) ... 136s Selecting previously unselected package libxcb-icccm4:ppc64el. 136s Preparing to unpack .../171-libxcb-icccm4_0.4.2-1_ppc64el.deb ... 136s Unpacking libxcb-icccm4:ppc64el (0.4.2-1) ... 136s Selecting previously unselected package libxcb-util1:ppc64el. 136s Preparing to unpack .../172-libxcb-util1_0.4.1-1_ppc64el.deb ... 136s Unpacking libxcb-util1:ppc64el (0.4.1-1) ... 136s Selecting previously unselected package libxcb-image0:ppc64el. 136s Preparing to unpack .../173-libxcb-image0_0.4.0-2build1_ppc64el.deb ... 136s Unpacking libxcb-image0:ppc64el (0.4.0-2build1) ... 136s Selecting previously unselected package libxcb-keysyms1:ppc64el. 136s Preparing to unpack .../174-libxcb-keysyms1_0.4.1-1_ppc64el.deb ... 136s Unpacking libxcb-keysyms1:ppc64el (0.4.1-1) ... 136s Selecting previously unselected package libxcb-render-util0:ppc64el. 136s Preparing to unpack .../175-libxcb-render-util0_0.3.10-1_ppc64el.deb ... 136s Unpacking libxcb-render-util0:ppc64el (0.3.10-1) ... 136s Selecting previously unselected package libxcb-shape0:ppc64el. 136s Preparing to unpack .../176-libxcb-shape0_1.17.0-2_ppc64el.deb ... 136s Unpacking libxcb-shape0:ppc64el (1.17.0-2) ... 136s Selecting previously unselected package libxcb-xinerama0:ppc64el. 136s Preparing to unpack .../177-libxcb-xinerama0_1.17.0-2_ppc64el.deb ... 136s Unpacking libxcb-xinerama0:ppc64el (1.17.0-2) ... 136s Selecting previously unselected package libxcb-xinput0:ppc64el. 136s Preparing to unpack .../178-libxcb-xinput0_1.17.0-2_ppc64el.deb ... 136s Unpacking libxcb-xinput0:ppc64el (1.17.0-2) ... 136s Selecting previously unselected package libxcb-xkb1:ppc64el. 136s Preparing to unpack .../179-libxcb-xkb1_1.17.0-2_ppc64el.deb ... 136s Unpacking libxcb-xkb1:ppc64el (1.17.0-2) ... 136s Selecting previously unselected package libxkbcommon-x11-0:ppc64el. 136s Preparing to unpack .../180-libxkbcommon-x11-0_1.7.0-2_ppc64el.deb ... 136s Unpacking libxkbcommon-x11-0:ppc64el (1.7.0-2) ... 136s Selecting previously unselected package libqt5gui5t64:ppc64el. 136s Preparing to unpack .../181-libqt5gui5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ... 136s Unpacking libqt5gui5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 136s Selecting previously unselected package libqt5widgets5t64:ppc64el. 136s Preparing to unpack .../182-libqt5widgets5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ... 136s Unpacking libqt5widgets5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 136s Selecting previously unselected package libqt5xml5t64:ppc64el. 136s Preparing to unpack .../183-libqt5xml5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ... 136s Unpacking libqt5xml5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 136s Selecting previously unselected package libqt5designer5:ppc64el. 136s Preparing to unpack .../184-libqt5designer5_5.15.15-6build1_ppc64el.deb ... 136s Unpacking libqt5designer5:ppc64el (5.15.15-6build1) ... 136s Selecting previously unselected package libqt5sql5t64:ppc64el. 136s Preparing to unpack .../185-libqt5sql5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ... 136s Unpacking libqt5sql5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 136s Selecting previously unselected package libqt5help5:ppc64el. 136s Preparing to unpack .../186-libqt5help5_5.15.15-6build1_ppc64el.deb ... 136s Unpacking libqt5help5:ppc64el (5.15.15-6build1) ... 136s Selecting previously unselected package libqt5opengl5t64:ppc64el. 136s Preparing to unpack .../187-libqt5opengl5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ... 136s Unpacking libqt5opengl5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 136s Selecting previously unselected package libqt5printsupport5t64:ppc64el. 136s Preparing to unpack .../188-libqt5printsupport5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ... 136s Unpacking libqt5printsupport5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 136s Selecting previously unselected package libqt5test5t64:ppc64el. 136s Preparing to unpack .../189-libqt5test5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ... 136s Unpacking libqt5test5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 136s Selecting previously unselected package libraqm0:ppc64el. 136s Preparing to unpack .../190-libraqm0_0.10.2-1_ppc64el.deb ... 136s Unpacking libraqm0:ppc64el (0.10.2-1) ... 136s Selecting previously unselected package libssm2:ppc64el. 136s Preparing to unpack .../191-libssm2_1.4.0-2build1_ppc64el.deb ... 136s Unpacking libssm2:ppc64el (1.4.0-2build1) ... 136s Selecting previously unselected package libwebpdemux2:ppc64el. 136s Preparing to unpack .../192-libwebpdemux2_1.5.0-0.1_ppc64el.deb ... 136s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1) ... 136s Selecting previously unselected package libwebpmux3:ppc64el. 136s Preparing to unpack .../193-libwebpmux3_1.5.0-0.1_ppc64el.deb ... 136s Unpacking libwebpmux3:ppc64el (1.5.0-0.1) ... 136s Selecting previously unselected package libwxbase3.2-1t64:ppc64el. 136s Preparing to unpack .../194-libwxbase3.2-1t64_3.2.6+dfsg-2ubuntu1_ppc64el.deb ... 136s Unpacking libwxbase3.2-1t64:ppc64el (3.2.6+dfsg-2ubuntu1) ... 136s Selecting previously unselected package libxtst6:ppc64el. 136s Preparing to unpack .../195-libxtst6_2%3a1.2.5-1_ppc64el.deb ... 136s Unpacking libxtst6:ppc64el (2:1.2.5-1) ... 136s Selecting previously unselected package libwxgtk3.2-1t64:ppc64el. 136s Preparing to unpack .../196-libwxgtk3.2-1t64_3.2.6+dfsg-2ubuntu1_ppc64el.deb ... 136s Unpacking libwxgtk3.2-1t64:ppc64el (3.2.6+dfsg-2ubuntu1) ... 137s Selecting previously unselected package libwxgtk-gl3.2-1t64:ppc64el. 137s Preparing to unpack .../197-libwxgtk-gl3.2-1t64_3.2.6+dfsg-2ubuntu1_ppc64el.deb ... 137s Unpacking libwxgtk-gl3.2-1t64:ppc64el (3.2.6+dfsg-2ubuntu1) ... 137s Selecting previously unselected package libxslt1.1:ppc64el. 137s Preparing to unpack .../198-libxslt1.1_1.1.39-0exp1ubuntu4_ppc64el.deb ... 137s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1ubuntu4) ... 137s Selecting previously unselected package pymol-data. 137s Preparing to unpack .../199-pymol-data_3.1.0+dfsg-1_all.deb ... 137s Unpacking pymol-data (3.1.0+dfsg-1) ... 137s Selecting previously unselected package python-matplotlib-data. 137s Preparing to unpack .../200-python-matplotlib-data_3.8.3-7build1_all.deb ... 137s Unpacking python-matplotlib-data (3.8.3-7build1) ... 137s Selecting previously unselected package python3-all. 137s Preparing to unpack .../201-python3-all_3.13.2-2_ppc64el.deb ... 137s Unpacking python3-all (3.13.2-2) ... 137s Selecting previously unselected package python3-brotli. 137s Preparing to unpack .../202-python3-brotli_1.1.0-2build4_ppc64el.deb ... 137s Unpacking python3-brotli (1.1.0-2build4) ... 137s Selecting previously unselected package python3-legacy-cgi. 137s Preparing to unpack .../203-python3-legacy-cgi_2.6.2-1_all.deb ... 137s Unpacking python3-legacy-cgi (2.6.2-1) ... 137s Selecting previously unselected package python3-pycbf. 137s Preparing to unpack .../204-python3-pycbf_0.9.7+dfsg1-5build1_ppc64el.deb ... 137s Unpacking python3-pycbf (0.9.7+dfsg1-5build1) ... 137s Selecting previously unselected package python3-h5py-serial. 137s Preparing to unpack .../205-python3-h5py-serial_3.13.0-1_ppc64el.deb ... 137s Unpacking python3-h5py-serial (3.13.0-1) ... 137s Selecting previously unselected package python3-h5py. 137s Preparing to unpack .../206-python3-h5py_3.13.0-1_all.deb ... 137s Unpacking python3-h5py (3.13.0-1) ... 137s Selecting previously unselected package python3-hdf5plugin. 137s Preparing to unpack .../207-python3-hdf5plugin_5.0.0-1_all.deb ... 137s Unpacking python3-hdf5plugin (5.0.0-1) ... 137s Selecting previously unselected package python3-dateutil. 137s Preparing to unpack .../208-python3-dateutil_2.9.0-4_all.deb ... 137s Unpacking python3-dateutil (2.9.0-4) ... 137s Selecting previously unselected package libopenjp2-7:ppc64el. 137s Preparing to unpack .../209-libopenjp2-7_2.5.3-2_ppc64el.deb ... 137s Unpacking libopenjp2-7:ppc64el (2.5.3-2) ... 137s Selecting previously unselected package python3-pil:ppc64el. 137s Preparing to unpack .../210-python3-pil_11.1.0-5build1_ppc64el.deb ... 137s Unpacking python3-pil:ppc64el (11.1.0-5build1) ... 137s Selecting previously unselected package python3.13-tk. 137s Preparing to unpack .../211-python3.13-tk_3.13.2-2_ppc64el.deb ... 137s Unpacking python3.13-tk (3.13.2-2) ... 137s Selecting previously unselected package python3-tk:ppc64el. 137s Preparing to unpack .../212-python3-tk_3.13.2-1_ppc64el.deb ... 137s Unpacking python3-tk:ppc64el (3.13.2-1) ... 137s Selecting previously unselected package python3-pil.imagetk:ppc64el. 137s Preparing to unpack .../213-python3-pil.imagetk_11.1.0-5build1_ppc64el.deb ... 137s Unpacking python3-pil.imagetk:ppc64el (11.1.0-5build1) ... 137s Selecting previously unselected package python3-contourpy. 137s Preparing to unpack .../214-python3-contourpy_1.3.1-1build1_ppc64el.deb ... 137s Unpacking python3-contourpy (1.3.1-1build1) ... 137s Selecting previously unselected package python3-cycler. 137s Preparing to unpack .../215-python3-cycler_0.12.1-1_all.deb ... 137s Unpacking python3-cycler (0.12.1-1) ... 137s Selecting previously unselected package python3-platformdirs. 137s Preparing to unpack .../216-python3-platformdirs_4.3.6-1_all.deb ... 137s Unpacking python3-platformdirs (4.3.6-1) ... 137s Selecting previously unselected package python3-fs. 137s Preparing to unpack .../217-python3-fs_2.4.16-7_all.deb ... 137s Unpacking python3-fs (2.4.16-7) ... 137s Selecting previously unselected package python3-lxml:ppc64el. 137s Preparing to unpack .../218-python3-lxml_5.3.1-1build1_ppc64el.deb ... 137s Unpacking python3-lxml:ppc64el (5.3.1-1build1) ... 137s Selecting previously unselected package python3-lz4. 137s Preparing to unpack .../219-python3-lz4_4.4.0+dfsg-1build1_ppc64el.deb ... 137s Unpacking python3-lz4 (4.4.0+dfsg-1build1) ... 137s Selecting previously unselected package python3-decorator. 137s Preparing to unpack .../220-python3-decorator_5.1.1-5_all.deb ... 137s Unpacking python3-decorator (5.1.1-5) ... 137s Selecting previously unselected package python3-scipy. 137s Preparing to unpack .../221-python3-scipy_1.14.1-4ubuntu2_ppc64el.deb ... 137s Unpacking python3-scipy (1.14.1-4ubuntu2) ... 138s Selecting previously unselected package python3-mpmath. 138s Preparing to unpack .../222-python3-mpmath_1.3.0-1_all.deb ... 138s Unpacking python3-mpmath (1.3.0-1) ... 138s Selecting previously unselected package python3-sympy. 138s Preparing to unpack .../223-python3-sympy_1.13.3-5_all.deb ... 138s Unpacking python3-sympy (1.13.3-5) ... 138s Selecting previously unselected package python3-ufolib2. 138s Preparing to unpack .../224-python3-ufolib2_0.17.0+dfsg1-1_all.deb ... 138s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ... 138s Selecting previously unselected package unicode-data. 138s Preparing to unpack .../225-unicode-data_15.1.0-1_all.deb ... 138s Unpacking unicode-data (15.1.0-1) ... 139s Selecting previously unselected package python3-fonttools. 139s Preparing to unpack .../226-python3-fonttools_4.55.3-2build1_ppc64el.deb ... 139s Unpacking python3-fonttools (4.55.3-2build1) ... 139s Selecting previously unselected package python3-kiwisolver. 139s Preparing to unpack .../227-python3-kiwisolver_1.4.7-3build1_ppc64el.deb ... 139s Unpacking python3-kiwisolver (1.4.7-3build1) ... 139s Selecting previously unselected package python3-packaging. 139s Preparing to unpack .../228-python3-packaging_24.2-1_all.deb ... 139s Unpacking python3-packaging (24.2-1) ... 139s Selecting previously unselected package python3-matplotlib. 139s Preparing to unpack .../229-python3-matplotlib_3.8.3-7build1_ppc64el.deb ... 139s Unpacking python3-matplotlib (3.8.3-7build1) ... 139s Selecting previously unselected package sphinx-rtd-theme-common. 139s Preparing to unpack .../230-sphinx-rtd-theme-common_3.0.2+dfsg-2_all.deb ... 139s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-2) ... 139s Selecting previously unselected package python3-mrcfile. 139s Preparing to unpack .../231-python3-mrcfile_1.5.4-2_all.deb ... 139s Unpacking python3-mrcfile (1.5.4-2) ... 139s Selecting previously unselected package python3-natsort. 139s Preparing to unpack .../232-python3-natsort_8.0.2-2_all.deb ... 139s Unpacking python3-natsort (8.0.2-2) ... 139s Selecting previously unselected package python3-flexcache. 139s Preparing to unpack .../233-python3-flexcache_0.3-2_all.deb ... 139s Unpacking python3-flexcache (0.3-2) ... 139s Selecting previously unselected package python3-flexparser. 139s Preparing to unpack .../234-python3-flexparser_0.4-1_all.deb ... 139s Unpacking python3-flexparser (0.4-1) ... 139s Selecting previously unselected package python3-pint. 139s Preparing to unpack .../235-python3-pint_0.24.4-1_all.deb ... 139s Unpacking python3-pint (0.24.4-1) ... 139s Selecting previously unselected package python3-nxmx. 139s Preparing to unpack .../236-python3-nxmx_0.0.4-1_all.deb ... 139s Unpacking python3-nxmx (0.0.4-1) ... 139s Selecting previously unselected package python3-ordered-set. 139s Preparing to unpack .../237-python3-ordered-set_4.1.0-1_all.deb ... 139s Unpacking python3-ordered-set (4.1.0-1) ... 139s Selecting previously unselected package python3-procrunner. 140s Preparing to unpack .../238-python3-procrunner_2.3.3-2_all.deb ... 140s Unpacking python3-procrunner (2.3.3-2) ... 140s Selecting previously unselected package libopengl0:ppc64el. 140s Preparing to unpack .../239-libopengl0_1.7.0-1build1_ppc64el.deb ... 140s Unpacking libopengl0:ppc64el (1.7.0-1build1) ... 140s Selecting previously unselected package libglu1-mesa:ppc64el. 140s Preparing to unpack .../240-libglu1-mesa_9.0.2-1.1build1_ppc64el.deb ... 140s Unpacking libglu1-mesa:ppc64el (9.0.2-1.1build1) ... 140s Selecting previously unselected package python3-opengl. 140s Preparing to unpack .../241-python3-opengl_3.1.9+dfsg-1syncable1_all.deb ... 140s Unpacking python3-opengl (3.1.9+dfsg-1syncable1) ... 140s Selecting previously unselected package python3-pyqt5.sip. 140s Preparing to unpack .../242-python3-pyqt5.sip_12.17.0-1build1_ppc64el.deb ... 140s Unpacking python3-pyqt5.sip (12.17.0-1build1) ... 140s Selecting previously unselected package python3-pyqt5. 140s Preparing to unpack .../243-python3-pyqt5_5.15.11+dfsg-2_ppc64el.deb ... 140s Unpacking python3-pyqt5 (5.15.11+dfsg-2) ... 140s Selecting previously unselected package python3-pyqt5.qtopengl. 140s Preparing to unpack .../244-python3-pyqt5.qtopengl_5.15.11+dfsg-2_ppc64el.deb ... 140s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-2) ... 140s Selecting previously unselected package python3-pymol. 140s Preparing to unpack .../245-python3-pymol_3.1.0+dfsg-1_ppc64el.deb ... 140s Unpacking python3-pymol (3.1.0+dfsg-1) ... 140s Selecting previously unselected package python3-six. 140s Preparing to unpack .../246-python3-six_1.17.0-1_all.deb ... 140s Unpacking python3-six (1.17.0-1) ... 140s Selecting previously unselected package python3-tqdm. 140s Preparing to unpack .../247-python3-tqdm_4.67.1-2_all.deb ... 140s Unpacking python3-tqdm (4.67.1-2) ... 140s Selecting previously unselected package python3-wxgtk4.0. 140s Preparing to unpack .../248-python3-wxgtk4.0_4.2.2+dfsg-3build1_ppc64el.deb ... 140s Unpacking python3-wxgtk4.0 (4.2.2+dfsg-3build1) ... 141s Selecting previously unselected package python3-cctbx. 141s Preparing to unpack .../249-python3-cctbx_2024.10+ds2+~3.22.1+ds1-4build2_ppc64el.deb ... 141s Unpacking python3-cctbx (2024.10+ds2+~3.22.1+ds1-4build2) ... 142s Selecting previously unselected package python3-iniconfig. 142s Preparing to unpack .../250-python3-iniconfig_1.1.1-2_all.deb ... 142s Unpacking python3-iniconfig (1.1.1-2) ... 142s Selecting previously unselected package python3-pluggy. 142s Preparing to unpack .../251-python3-pluggy_1.5.0-1_all.deb ... 142s Unpacking python3-pluggy (1.5.0-1) ... 142s Selecting previously unselected package python3-pytest. 142s Preparing to unpack .../252-python3-pytest_8.3.5-1_all.deb ... 142s Unpacking python3-pytest (8.3.5-1) ... 142s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 142s Setting up libboost-python1.83.0 (1.83.0-4.1ubuntu2) ... 142s Setting up libxcb-dri3-0:ppc64el (1.17.0-2) ... 142s Setting up liblcms2-2:ppc64el (2.16-2) ... 142s Setting up python3-iniconfig (1.1.1-2) ... 142s Setting up libpixman-1-0:ppc64el (0.44.0-3) ... 142s Setting up libsharpyuv0:ppc64el (1.5.0-0.1) ... 142s Setting up libwayland-server0:ppc64el (1.23.1-3) ... 142s Setting up libx11-xcb1:ppc64el (2:1.8.10-2) ... 142s Setting up libdouble-conversion3:ppc64el (3.3.1-1) ... 142s Setting up fonts-lato (2.015-1) ... 142s Setting up libxdamage1:ppc64el (1:1.1.6-1build1) ... 142s Setting up libxcb-xfixes0:ppc64el (1.17.0-2) ... 142s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 142s Setting up libantlr3c-3.4-0:ppc64el (3.4+dfsg-4build2) ... 142s Setting up hicolor-icon-theme (0.18-2) ... 142s Setting up libxi6:ppc64el (2:1.8.2-1) ... 142s Setting up libxcb-xinput0:ppc64el (1.17.0-2) ... 142s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ... 142s Setting up libdatrie1:ppc64el (0.2.13-3build1) ... 142s Setting up libmmdb2-0:ppc64el (2.0.22-1) ... 142s Setting up libboost-timer1.83.0:ppc64el (1.83.0-4.1ubuntu2) ... 142s Setting up python3-lz4 (4.4.0+dfsg-1build1) ... 142s Setting up libxcb-render0:ppc64el (1.17.0-2) ... 142s Setting up libglvnd0:ppc64el (1.7.0-1build1) ... 142s Setting up fonts-lyx (2.4.3-1) ... 142s Setting up libxcb-glx0:ppc64el (1.17.0-2) ... 142s Setting up python3-tqdm (4.67.1-2) ... 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145s Setting up at-spi2-common (2.56.0-2) ... 145s Setting up libccp4c0t64:ppc64el (8.0.0-4) ... 145s Setting up libxcb-randr0:ppc64el (1.17.0-2) ... 145s Setting up libasan8:ppc64el (15-20250319-1ubuntu1) ... 145s Setting up libxslt1.1:ppc64el (1.1.39-0exp1ubuntu4) ... 145s Setting up libqt5sql5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 145s Setting up libmd4c0:ppc64el (0.5.2-2) ... 145s Setting up libopenjp2-7:ppc64el (2.5.3-2) ... 145s Setting up libharfbuzz0b:ppc64el (10.2.0-1) ... 145s Setting up libthai-data (0.1.29-2build1) ... 145s Setting up python3-dateutil (2.9.0-4) ... 146s Setting up python3-flexcache (0.3-2) ... 146s Setting up libglu1-mesa:ppc64el (9.0.2-1.1build1) ... 146s Setting up libwayland-egl1:ppc64el (1.23.1-3) ... 146s Setting up libxss1:ppc64el (1:1.2.3-1build3) ... 146s Setting up libtsan2:ppc64el (15-20250319-1ubuntu1) ... 146s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 146s Setting up libwxbase3.2-1t64:ppc64el (3.2.6+dfsg-2ubuntu1) ... 146s Setting up python3-mpmath (1.3.0-1) ... 146s Setting up libisl23:ppc64el (0.27-1) ... 146s Setting up python-matplotlib-data (3.8.3-7build1) ... 146s Setting up libwebpmux3:ppc64el (1.5.0-0.1) ... 146s Setting up libxcomposite1:ppc64el (1:0.4.6-1) ... 146s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 146s Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ... 146s Setting up libcc1-0:ppc64el (15-20250319-1ubuntu1) ... 146s Setting up python3-procrunner (2.3.3-2) ... 146s Setting up liblsan0:ppc64el (15-20250319-1ubuntu1) ... 146s Setting up libsz2:ppc64el (1.1.3-1) ... 146s Setting up libitm1:ppc64el (15-20250319-1ubuntu1) ... 146s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 146s Setting up libann-cctbx-dev (1.1.2+doc-9build1) ... 146s Setting up libwacom-common (2.14.0-1) ... 146s Setting up libwayland-client0:ppc64el (1.23.1-3) ... 146s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 146s Setting up python3-sympy (1.13.3-5) ... 153s Setting up libice6:ppc64el (2:1.1.1-1) ... 153s Setting up mesa-libgallium:ppc64el (25.0.1-2ubuntu2) ... 153s Setting up liblapack3:ppc64el (3.12.1-2) ... 153s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 153s Setting up libqt5dbus5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 153s Setting up libssm2:ppc64el (1.4.0-2build1) ... 153s Setting up libatk1.0-0t64:ppc64el (2.56.0-2) ... 153s Setting up libgbm1:ppc64el (25.0.1-2ubuntu2) ... 153s Setting up libwacom9:ppc64el (2.14.0-1) ... 153s Setting up fontconfig-config (2.15.0-2.1ubuntu1) ... 153s Setting up python3-pytest (8.3.5-1) ... 154s Setting up libxtst6:ppc64el (2:1.2.5-1) ... 154s Setting up libwebpdemux2:ppc64el (1.5.0-0.1) ... 154s Setting up libxcursor1:ppc64el (1:1.2.3-1) ... 154s Setting up libgl1-mesa-dri:ppc64el (25.0.1-2ubuntu2) ... 154s Setting up libqt5network5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 154s Setting up libavahi-common3:ppc64el (0.8-16ubuntu2) ... 154s Setting up libqt5xml5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 154s Setting up dconf-service (0.40.0-5) ... 154s Setting up libqt5test5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 154s Setting up libccp4f0t64:ppc64el (8.0.0-4) ... 154s Setting up libinput-bin (1.27.1-1) ... 154s Setting up python3-pint (0.24.4-1) ... 154s Setting up libthai0:ppc64el (0.1.29-2build1) ... 154s Setting up libegl-mesa0:ppc64el (25.0.1-2ubuntu2) ... 154s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 154s Setting up libraqm0:ppc64el (0.10.2-1) ... 154s Setting up libpython3.13-dev:ppc64el (3.13.2-2) ... 154s Setting up cpp-14-powerpc64le-linux-gnu (14.2.0-19ubuntu1) ... 154s Setting up python3-numpy (1:2.2.3+ds-5) ... 156s Setting up libjs-sphinxdoc (8.1.3-5) ... 156s Setting up cpp-14 (14.2.0-19ubuntu1) ... 156s Setting up libhdf5-310:ppc64el (1.14.5+repack-3) ... 156s Setting up python3-lxml:ppc64el (5.3.1-1build1) ... 156s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 156s Setting up libwayland-cursor0:ppc64el (1.23.1-3) ... 156s Setting up libegl1:ppc64el (1.7.0-1build1) ... 156s Setting up libgdk-pixbuf-2.0-0:ppc64el (2.42.12+dfsg-2) ... 156s Setting up python3-contourpy (1.3.1-1build1) ... 156s Setting up libfontconfig1:ppc64el (2.15.0-2.1ubuntu1) ... 156s Setting up libgcc-14-dev:ppc64el (14.2.0-19ubuntu1) ... 156s Setting up libstdc++-14-dev:ppc64el (14.2.0-19ubuntu1) ... 156s Setting up libsm6:ppc64el (2:1.2.4-1) ... 156s Setting up libavahi-client3:ppc64el (0.8-16ubuntu2) ... 156s Setting up cpp-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 156s Setting up gcc-14-powerpc64le-linux-gnu (14.2.0-19ubuntu1) ... 156s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 156s Setting up python3-mrcfile (1.5.4-2) ... 156s Setting up libatk-bridge2.0-0t64:ppc64el (2.56.0-2) ... 156s Setting up libinput10:ppc64el (1.27.1-1) ... 156s Setting up gtk-update-icon-cache (4.18.2+ds-1) ... 156s Setting up libhdf5-hl-310:ppc64el (1.14.5+repack-3) ... 156s Setting up fontconfig (2.15.0-2.1ubuntu1) ... 159s Regenerating fonts cache... done. 159s Setting up libxft2:ppc64el (2.3.6-1build1) ... 159s Setting up libboost1.83-dev:ppc64el (1.83.0-4.1ubuntu2) ... 159s Setting up libglx-mesa0:ppc64el (25.0.1-2ubuntu2) ... 159s Setting up python3-scipy (1.14.1-4ubuntu2) ... 162s Setting up libpython3-dev:ppc64el (3.13.2-2) ... 162s Setting up libcbf1t64:ppc64el (0.9.7+dfsg1-5build1) ... 162s Setting up g++-14-powerpc64le-linux-gnu (14.2.0-19ubuntu1) ... 162s Setting up libglx0:ppc64el (1.7.0-1build1) ... 162s Setting up dconf-gsettings-backend:ppc64el (0.40.0-5) ... 162s Setting up libccp4-dev:ppc64el (8.0.0-4) ... 162s Setting up python3.13-dev (3.13.2-2) ... 162s Setting up libtk8.6:ppc64el (8.6.16-1) ... 162s Setting up libpango-1.0-0:ppc64el (1.56.3-1) ... 162s Setting up libnetcdf22:ppc64el (1:4.9.3-1) ... 162s Setting up python3-h5py-serial (3.13.0-1) ... 163s Setting up libcairo2:ppc64el (1.18.4-1) ... 163s Setting up python3.13-tk (3.13.2-2) ... 163s Setting up gcc-14 (14.2.0-19ubuntu1) ... 163s Setting up python3-pil:ppc64el (11.1.0-5build1) ... 163s Setting up libgl1:ppc64el (1.7.0-1build1) ... 163s Setting up adwaita-icon-theme (48.0-1) ... 163s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 163s Setting up gcc-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 163s Setting up libglut3.12:ppc64el (3.4.0-4) ... 163s Setting up libnotify4:ppc64el (0.8.4-1) ... 163s Setting up python3-dev (3.13.2-2) ... 163s Setting up libboost-python1.83-dev (1.83.0-4.1ubuntu2) ... 163s Setting up python3-pycbf (0.9.7+dfsg1-5build1) ... 163s Setting up python3-h5py (3.13.0-1) ... 163s Setting up libglew2.2:ppc64el (2.2.0-4build1) ... 163s Setting up python3-hdf5plugin (5.0.0-1) ... 163s Setting up cpp (4:14.2.0-1ubuntu1) ... 163s Setting up libcairo-gobject2:ppc64el (1.18.4-1) ... 163s Setting up g++-14 (14.2.0-19ubuntu1) ... 163s Setting up libpangoft2-1.0-0:ppc64el (1.56.3-1) ... 163s Setting up python3-nxmx (0.0.4-1) ... 164s Setting up libcups2t64:ppc64el (2.4.11-0ubuntu2) ... 164s Setting up libgtk-3-common (3.24.49-2ubuntu1) ... 164s Setting up libpangocairo-1.0-0:ppc64el (1.56.3-1) ... 164s Setting up g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ... 164s Setting up libcctbx0 (2024.10+ds2+~3.22.1+ds1-4build2) ... 164s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 164s Setting up blt (2.5.3+dfsg-8) ... 164s Setting up python3-tk:ppc64el (3.13.2-1) ... 164s Setting up python3-opengl (3.1.9+dfsg-1syncable1) ... 164s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:30: SyntaxWarning: invalid escape sequence '\ ' 164s |\ |\ 165s Setting up gcc (4:14.2.0-1ubuntu1) ... 165s Setting up libboost-python-dev (1.83.0.2ubuntu1) ... 165s Setting up libqt5gui5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 165s Setting up python3-pil.imagetk:ppc64el (11.1.0-5build1) ... 166s Setting up g++ (4:14.2.0-1ubuntu1) ... 166s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 166s Setting up libcctbx-dev (2024.10+ds2+~3.22.1+ds1-4build2) ... 166s Setting up libqt5widgets5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 166s Setting up libqt5help5:ppc64el (5.15.15-6build1) ... 166s Setting up libqt5opengl5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 166s Setting up libqt5printsupport5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 166s Setting up libqt5designer5:ppc64el (5.15.15-6build1) ... 166s Setting up python3-pyqt5 (5.15.11+dfsg-2) ... 166s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-2) ... 166s Setting up python3-pymol (3.1.0+dfsg-1) ... 166s Setting up python3-fonttools (4.55.3-2build1) ... 167s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 168s Setting up python3-matplotlib (3.8.3-7build1) ... 169s Processing triggers for libc-bin (2.41-1ubuntu2) ... 169s Processing triggers for man-db (2.13.0-1) ... 171s Processing triggers for libglib2.0-0t64:ppc64el (2.84.0-1) ... 171s Setting up libgtk-3-0t64:ppc64el (3.24.49-2ubuntu1) ... 171s Processing triggers for udev (257.4-1ubuntu1) ... 171s Setting up libwxgtk3.2-1t64:ppc64el (3.2.6+dfsg-2ubuntu1) ... 171s Setting up libwxgtk-gl3.2-1t64:ppc64el (3.2.6+dfsg-2ubuntu1) ... 171s Setting up python3-wxgtk4.0 (4.2.2+dfsg-3build1) ... 173s Setting up python3-cctbx (2024.10+ds2+~3.22.1+ds1-4build2) ... 176s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:18: SyntaxWarning: invalid escape sequence '\{' 176s []_,.;:"&<>()/\{}'`~!@#$%*|+- 176s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:46: SyntaxWarning: invalid escape sequence '\/' 176s special_characters = """[]_,.;:"&<>()\/\{}'`~!@#$%*|+-""" 187s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:724: SyntaxWarning: invalid escape sequence '\o' 187s width=pairwise_differences_db, label='$\omega_{hkl}$' 187s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:739: SyntaxWarning: invalid escape sequence '\o' 187s axes[0].set_ylabel('Distribution of $\omega_{hbk}$') 187s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:740: SyntaxWarning: invalid escape sequence '\o' 187s axes[0].set_xlabel('Normalized PD ($\omega_{hbk}$)') 187s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:759: SyntaxWarning: invalid escape sequence '\o' 187s axes[1].set_xlabel('Sorted Normalized PD ($\omega_{hbk}$)') 187s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:778: SyntaxWarning: invalid escape sequence '\s' 187s axes[2].set_ylabel('Standard Deviation of $I_{hbk}/\sigma_{hbk}$') 187s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:807: SyntaxWarning: invalid escape sequence '\m' 187s axes_sadd.set_ylabel('$s_{\mathrm{fac}}^2 \\times s_{\mathrm{add}}^2$') 187s Processing triggers for libc-bin (2.41-1ubuntu2) ... 188s autopkgtest [14:48:42]: test cctbx: [----------------------- 188s Testing cctbx with python3.13: 189s Running 546 tests on 2 processors: 189s libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/sample.py" 189s libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/self_match.py" 189s "/usr/lib/cctbx/python3.13/boost_adaptbx/tests/tst_optional_copy" 189s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py" 189s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_rational.py" 189s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_optional.py" 189s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_std_pair.py" 189s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_tuple.py" 189s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stdout.py" 189s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stderr_stdout.py" 189s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_deprecation_tools.py" 189s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_is_periodic.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_reindexing.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_map_to_asu_isym.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_data_manipulation.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_bfgs.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_dev.py" P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry/tests/tst_geometry.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/covariance/tests/tst_covariance.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_goodness_of_symmetry.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_from_map.py" P312 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_aniso_restraints.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/math/boost_python/tst_math.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_targets_fd.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_xray.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray.py" I41/acd 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_r1.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_shelxl_wght_ls.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_f_model.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/array_family/boost_python/tst_flex.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_uctbx.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_crystal_orientation.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/boost_python/tst_sgtbx.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/boost_python/tst_N_fold_rot.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_ext.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_distance_based_connectivity.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_super_cell.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/adptbx/boost_python/tst_adptbx.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/boost_python/tst_miller.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_chemical_elements.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_xray_scattering.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_henke.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_icsd_radii.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_covalent_radii.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_neutron.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_sasaki.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_tiny_pse.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_wavelengths.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_formula.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_attenuation_coefficient.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/boost_python/tst_maptbx.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_bcr.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_loft.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/dmtbx/boost_python/tst_dmtbx.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/translation_search/boost_python/tst_translation_search.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_ext.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_proxy_registry.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_nonbonded_overlaps.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_motif.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/adp_restraints/tst_ext.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_math_module.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_krivy_gruber.py" --Quick 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_denominators.py" P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints.py" P3 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_site_constraints.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reflection_statistics.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_harker.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_twin_target.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/symbol_confidence.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/bravais_types.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_lookup_utils.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal.py" I41/acd 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_direct_space_asu.py" I41/acd 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pair_asu_table.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_coordination_sequences.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_close_packing.py" R-3mr 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py" P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller.py" P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_mem.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_mem_2.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py" P312 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_triplet_generator.py" P41 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_emma.py" P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_expand_to_p1.py" P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_change_basis.py" P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_wilson_plot.py" P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_derivatives.py" P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_fast_gradients.py" P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F_sq P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py" P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py" Pmmm 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation_2.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_loc_res.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_target_and_gradients.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py" P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grouped_data.py" P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_fft_map.py" P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sampled_model_density.py" P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fast_nv1995.py" F222 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_2.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_pickling.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_french_wilson.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/make_cns_input.py" P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/tst_cns_epsilon.py" P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/tst_cns_hl.py" P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/run_shelx76.py" P31 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pointgroup_tools.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/sub_lattice_tools.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/cosets.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_pg_tools.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_twin_laws.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_find_best_cell.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_amplitude_normalisation.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_statistics_graphs.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_web_change_basis.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/masks/tests/tst_flood_fill.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_r_free_utils.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/observations/tst_observations.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_ccp.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_mask.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_asymmetric_map.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_curves.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_maptbx_box.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_create_models_or_maps.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sphericity.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_statistics.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/merging/brehm_diederichs.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/multipolar/regression/tst_multipolar.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity_allsym.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_modifications.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_wavelength_units.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fcalc_fft_stability.py" 189s libtbx.python "/usr/lib/python3/dist-packages/cma_es/tst_cma_es.py" 189s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_ext.py" 189s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_equivalence.py" 189s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_read.py" 189s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_cout.py" 189s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_show_calls.py" 189s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_command_line.py" 189s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_separate_files.py" 189s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_cout_compile.py" stop 189s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_io.py" 189s libtbx.python "/usr/lib/python3/dist-packages/gltbx/tst_ellipsoids.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mrc_io.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_wildcard.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/gui_tools/tst.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_simple_parser.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_phil.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_cif_inputs.py" 189s libtbx.python 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189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/modified_aa_names.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/modified_rna_dna_names.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_sheet.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_annotation.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_annotation_long.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/secondary_structure.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_selection_string.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_secondary_structure.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_utils.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_secondary_structure_2.py" 189s libtbx.python 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189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_statistics.py" Fdd2 P31m 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_data_plots.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_csv_utils.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_file_reader.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_bioinformatics.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_segids.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_input.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py" 189s libtbx.python 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libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_xparm.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_xds_inp.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_integrate_hkl.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_spots_xds.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_as_cif.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/dsn6/tst.py" P31 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_input.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_read_mtrix_records_from_cif.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_show_systematic_absences.py" 189s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_miller_sort_asu.py" 189s libtbx.python 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"/usr/lib/python3/dist-packages/libtbx/queuing_system_utils/pbs_utils.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/queuing_system_utils/sge_utils.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/introspection.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_thread_utils.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp_state.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_pickle.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_fully_buffered_timeout.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_scheduling.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/easy_run.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_containers.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_path.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_math_utils.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/assert_utils.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_str_utils.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/table_utils.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_dlite.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_tokenizer.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_experimental.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_interface.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_object_oriented_patterns.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/find_reference_cycles.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_binary_search.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_topological_sort.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/clusterTests.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_citations.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_python_code_parsing.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_representation.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_find_unused_imports.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_program_template.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_version.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp_multicore.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_runtime_utils.py" 189s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_xmlrpc_utils.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_smoothing.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_genetic_algorithm_with_mp.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_basic.py" 189s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_1" 189s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_2" 189s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_3" 189s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_4" 189s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_5" 189s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_vec3" 189s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_unsigned_float_arithmetic" 189s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_mat3" 189s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_sym_mat3" 189s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_ref_matrix_facet" 189s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_accessors" 189s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_optional_copy" 189s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_rectangular_full_packed" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_flex_argument_passing.py" 189s "/usr/lib/cctbx/python3.13/scitbx/serialization/tst_base_256" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_minimum_covering_ellipsoid.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_cubic_equation.py" 189s "/usr/lib/cctbx/python3.13/scitbx/math/tests/tst" 189s "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_givens" 189s "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_householder" 189s "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_svd" 189s "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_cholesky" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/tests/tst_row_echelon.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/tests/tst_householder.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_matrix.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_cholesky.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_svd.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_eigensystem.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_lapack_svd.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_lapack_dsyev.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/error/tst_error.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_map.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_set.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_vector.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/regression_test.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_flex.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_numpy_bridge.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_smart_selection.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_shared.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_cubicle_neighbors.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_r3_utils.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_regular_grid_on_unit_sphere.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/__init__.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_random_transform.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_graph.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_robust.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/superpose.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/spe.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/incremental_SO3_sampling.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_curve_fitting.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_weighted_correlation.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_similarity_indices.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_exp_functions.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_fit_quadratic_function.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gcd.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_math.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_r3_rotation.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_resample.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_line_search.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gaussian.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_quadrature.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_bessel.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_halton.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_euler_angles.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_superpose.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_uniform_rotation_matrix.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_zernike.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_zernike_mom.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/sieve_of_eratosthenes.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/besselk.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/scale_curves.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_fit_peak.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_clustering.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_orthonormal_basis.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_g_function.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_angle_derivative.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_periodogram.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_error_propagation_matrix_inverse.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_tetrahedron.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_undirected_graph.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_so3_lie_algebra.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/minpack/tst.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_ext.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_curvatures.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_func_free_line_search.py" 189s "/usr/lib/cctbx/python3.13/scitbx/lbfgs/tst_lbfgs" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgsb/boost_python/tst_lbfgsb.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/fftpack/boost_python/tst_fftpack.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/flex_grid.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/flex_array_loops.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/principal_axes_of_inertia.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/lbfgs_recipe.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/lbfgs_linear_least_squares_fit.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/chebyshev_lsq_example.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/immoptibox_ports.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/rigid_body_refinement_core.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/integrating_a_weighted_sinc_function.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/minimizer_comparisons.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_utils.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/rigidity.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_rigidity.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/rigidity_matrix_symbolic.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_tardy_tree_find_paths.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_tardy_tree.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/test_cases_tardy_pdb.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_basic.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_tardy.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_energy_plots.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/tst.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/free_motion_reference_impl.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_featherstone.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_free_motion.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_free_motion_hard.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_joint_lib.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_singular.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_spherical_refinement.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_molecules.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/sparse/tests/tst_sparse.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/sparse/tests/tst_lu_factorization.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/iso_surface/tst_iso_surface.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/simplex.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/differential_evolution.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/golden_section_search.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/direct_search_simulated_annealing.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/random/tests/tst_random.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lstbx/tests/tst_normal_equations.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lstbx/tests/test_problems.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/glmtbx/tests/tst.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_basic.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_booth.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_twisted.py" 189s libtbx.python "/usr/lib/python3/dist-packages/scitbx/suffixtree/test/tst_single.py" 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/absolute_structure/tests/tst_absolute_structure.py" --fix_random_seeds 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py" 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py" --fix_seed --on=E "hall: P 1" "hall: P 3" "hall: -P 2ybc" 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/masks/tests/tst_masks.py" 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/structure_factors/direct/tests/tst_standard_xray.py" 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/tests/tst_weighting_schemes.py" --fix_random_seeds 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py" 189s "/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_reparametrisation" 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_occupancies.py" 189s "/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens" 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_same_group.py" 189s "/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_special_position" 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py" 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py" --normal_eqns_solving_method=naive 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_disorder.py" 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py" --normal_eqns_solving_method=levenberg-marquardt 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_rigid.py" 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_direction.py" 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_adp_restraints.py" 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_manager.py" 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_restraints.py" --verbose --scatterers=5 --resolution=0.2 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_refine.py" 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_anomrefine.py" 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/tests/tst_utils.py" 189s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/tests/tst_least_squares.py" 189s libtbx.python "/usr/lib/python3/dist-packages/rstbx/dps_core/tst_iotbx_converter.py" 189s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_predict.py" 189s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_ewald_sphere.py" 189s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_partial_derivatives.py" 189s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/fastbragg/tst_bragg_minimal.py" 189s libtbx.python "/usr/lib/python3/dist-packages/rstbx/sublattice_support/tst_sublattice.py" 189s libtbx.python -c "from rstbx.run_tests import run; run()" 189s libtbx.python "/usr/lib/python3/dist-packages/spotfinder/core_toolbox/boost_python/tst_small_image.py" 189s libtbx.python "/usr/lib/python3/dist-packages/spotfinder/diffraction/geometry.py" 189s libtbx.python "/usr/lib/python3/dist-packages/spotfinder/math_support/sphere_formulae.py" 189s 189s libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/self_match.py" [OK] 0.2s 189s Time: 0.23 189s Return code: 0 189s OKs: 1 189s Standard out: 189s OK 189s "/usr/lib/cctbx/python3.13/boost_adaptbx/tests/tst_optional_copy" [OK] 0.0s 189s Time: 0.00 189s Return code: 0 189s OKs: 1 189s Standard out: 189s OK 189s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py" [OK] 0.1s 189s Time: 0.06 189s Return code: 0 189s OKs: 1 189s Standard out: 189s OK 189s Standard error: 189s show_stack(1): /usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py(9) run 189s show_stack(2): /usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py(15) 189s libc backtrace (21 frames, most recent call last): 189s /lib/powerpc64le-linux-gnu/libc.so.6(__libc_start_main+0x1ac) [0x6a7702826e8c] 189s /lib/powerpc64le-linux-gnu/libc.so.6(+0x26c44) [0x6a7702826c44] 189s /usr/bin/python3.13(Py_BytesMain+0x38) [0x10255ce8] 189s /usr/bin/python3.13() [0x10256028] 189s /usr/bin/python3.13(Py_RunMain+0x3a8) [0x102ef3b8] 189s /usr/bin/python3.13() [0x102f2474] 189s /usr/bin/python3.13() [0x102f27a4] 189s /usr/bin/python3.13() [0x102f32b0] 189s /usr/bin/python3.13() [0x102a5844] 189s /usr/bin/python3.13() [0x102ad3c8] 189s /usr/bin/python3.13(PyEval_EvalCode+0xec) [0x1027337c] 189s /usr/bin/python3.13(_PyEval_EvalFrameDefault+0x31a8) [0x100fbe58] 189s /usr/bin/python3.13(_PyObject_MakeTpCall+0x338) [0x100d5738] 189s /lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0(+0x29994) [0x6a7701e19994] 189s /lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0(boost::python::handle_exception_impl(boost::function0)+0xb0) [0x6a7701e19650] 189s /lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0(+0x303f0) [0x6a7701e203f0] 189s /lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0(boost::python::objects::function::call(_object*, _object*) const+0x110) [0x6a7701e1fe70] 189s /usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-powerpc64le-linux-gnu.so(+0x1c700) [0x6a7701e7c700] 189s /usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-powerpc64le-linux-gnu.so(+0x29e2c) [0x6a7701e89e2c] 189s /usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-powerpc64le-linux-gnu.so(+0x1517c) [0x6a7701e7517c] 189s /usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-powerpc64le-linux-gnu.so(+0x2974c) [0x6a7701e8974c] 189s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_rational.py" [OK] 0.1s 189s Time: 0.13 189s Return code: 0 189s OKs: 1 189s Standard out: 189s OK 189s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_optional.py" [OK] 0.1s 189s Time: 0.09 189s Return code: 0 189s OKs: 1 189s Standard out: 189s exercise_wstring: 189s OK 190s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_std_pair.py" [OK] 0.1s 190s Time: 0.09 190s Return code: 0 190s OKs: 1 190s Standard out: 190s OK 190s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_tuple.py" [OK] 0.1s 190s Time: 0.06 190s Return code: 0 190s OKs: 1 190s Standard out: 190s OK 190s libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/sample.py" [OK] 0.7s 190s Time: 0.70 190s Return code: 0 190s OKs: 1 190s Standard out: 190s OK 190s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stderr_stdout.py" [OK] 0.1s 190s Time: 0.06 190s Return code: 0 190s OKs: 1 190s Standard out: 190s OK 190s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stdout.py" [OK] 0.1s 190s Time: 0.11 190s Return code: 0 190s OKs: 1 190s Standard out: 190s OK 190s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_deprecation_tools.py" [OK] 0.1s 190s Time: 0.06 190s Return code: 0 190s OKs: 1 190s Standard out: 190s OK 193s Standard error: 193s Traceback (most recent call last): 193s File "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py", line 7, in 193s import StringIO 193s ModuleNotFoundError: No module named 'StringIO' 193s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 193s 1 193s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 193s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py" [EXPECTED FAIL] 2.8s 193s Time: 2.84 193s Return code: 1 193s OKs: 0 194s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 194s 139 194s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 194s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py" [FAIL] 4.2s 194s Time: 4.22 194s Return code: 139 194s OKs: 0 194s Standard error: 194s Segmentation fault (core dumped) 197s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 197s 139 197s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 197s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py" [FAIL] 4.6s 197s Time: 4.65 197s Return code: 139 197s OKs: 0 197s Standard error: 197s Segmentation fault (core dumped) 200s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 200s 139 200s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 200s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_is_periodic.py" [FAIL] 6.4s 200s Time: 6.35 200s Return code: 139 200s OKs: 0 200s Standard error: 200s Segmentation fault (core dumped) 201s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_map_to_asu_isym.py" [OK] 0.6s 201s Time: 0.59 201s Return code: 0 201s OKs: 1 201s Standard out: 201s OK 204s Standard error: 204s Segmentation fault (core dumped) 204s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 204s 139 204s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 204s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_reindexing.py" [FAIL] 6.4s 204s Time: 6.37 204s Return code: 139 204s OKs: 0 207s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 207s 139 207s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 207s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_data_manipulation.py" [FAIL] 5.9s 207s Time: 5.86 207s Return code: 139 207s OKs: 0 207s Standard error: 207s Segmentation fault (core dumped) 210s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 210s 139 210s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 210s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_bfgs.py" [FAIL] 6.0s 210s Time: 5.95 210s Return code: 139 210s OKs: 0 210s Standard error: 210s Segmentation fault (core dumped) 213s Standard error: 213s Segmentation fault (core dumped) 213s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 213s 139 213s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 213s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_dev.py" P31 [FAIL] 6.0s 213s Time: 5.97 213s Return code: 139 213s OKs: 0 216s Standard error: 216s Segmentation fault (core dumped) 216s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 216s 139 216s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 216s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry/tests/tst_geometry.py" [FAIL] 6.4s 216s Time: 6.43 216s Return code: 139 216s OKs: 0 219s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 219s 139 219s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 219s libtbx.python "/usr/lib/python3/dist-packages/cctbx/covariance/tests/tst_covariance.py" [FAIL] 6.2s 219s Time: 6.23 219s Return code: 139 219s OKs: 0 219s Standard error: 219s Segmentation fault (core dumped) 222s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 222s 139 222s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 222s libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_goodness_of_symmetry.py" [FAIL] 6.1s 222s Time: 6.07 222s Return code: 139 222s OKs: 0 222s Standard error: 222s Segmentation fault (core dumped) 222s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_aniso_restraints.py" [OK] 0.3s 222s Time: 0.25 222s Return code: 0 222s OKs: 1 222s Standard out: 222s Skipping exercise(): chem_data directory not available 222s OK 222s libtbx.python "/usr/lib/python3/dist-packages/cctbx/math/boost_python/tst_math.py" [OK] 0.1s 222s Time: 0.12 222s Return code: 0 222s OKs: 1 222s Standard out: 222s OK 223s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_targets_fd.py" [OK] 0.6s 223s Time: 0.62 223s Return code: 0 223s OKs: 1 223s Standard out: 223s OK 225s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 225s 139 225s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 225s libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_from_map.py" P312 [FAIL] 6.3s 225s Time: 6.25 225s Return code: 139 225s OKs: 0 225s Standard error: 225s Segmentation fault (core dumped) 229s Standard error: 229s Segmentation fault (core dumped) 229s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 229s 139 229s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 229s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_xray.py" [FAIL] 6.1s 229s Time: 6.09 229s Return code: 139 229s OKs: 0 233s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 233s 139 233s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 233s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray.py" I41/acd [FAIL] 7.6s 233s Time: 7.60 233s Return code: 139 233s OKs: 0 233s Standard error: 233s Segmentation fault (core dumped) 236s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 236s 139 236s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 236s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_r1.py" [FAIL] 6.7s 236s Time: 6.74 236s Return code: 139 236s OKs: 0 236s Standard error: 236s Segmentation fault (core dumped) 239s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 239s 139 239s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 239s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_shelxl_wght_ls.py" [FAIL] 6.1s 239s Time: 6.10 239s Return code: 139 239s OKs: 0 239s Standard error: 239s Segmentation fault (core dumped) 242s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 242s 139 242s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 242s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_f_model.py" [FAIL] 6.1s 242s Standard error: 242s Segmentation fault (core dumped) 242s Time: 6.13 242s Return code: 139 242s OKs: 0 245s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 245s 139 245s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 245s libtbx.python "/usr/lib/python3/dist-packages/cctbx/array_family/boost_python/tst_flex.py" [FAIL] 6.3s 245s Time: 6.34 245s Return code: 139 245s OKs: 0 245s Standard error: 245s Segmentation fault (core dumped) 248s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 248s 139 248s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 248s libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_uctbx.py" [FAIL] 6.4s 248s Time: 6.40 248s Return code: 139 248s OKs: 0 248s Standard error: 248s Segmentation fault (core dumped) 251s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 251s 139 251s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 251s libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_crystal_orientation.py" [FAIL] 6.1s 251s Time: 6.09 251s Return code: 139 251s OKs: 0 251s Standard error: 251s Segmentation fault (core dumped) 252s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/boost_python/tst_N_fold_rot.py" [OK] 0.2s 252s Time: 0.21 252s Return code: 0 252s OKs: 1 252s Standard out: 252s OK 255s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 255s 139 255s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 255s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/boost_python/tst_sgtbx.py" [FAIL] 6.2s 255s Time: 6.17 255s Return code: 139 255s OKs: 0 255s Standard error: 255s Segmentation fault (core dumped) 258s Standard error: 258s Segmentation fault (core dumped) 258s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 258s 139 258s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 258s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_ext.py" [FAIL] 6.5s 258s Time: 6.51 258s Return code: 139 258s OKs: 0 261s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 261s 139 261s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 261s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_distance_based_connectivity.py" [FAIL] 6.8s 261s Time: 6.81 261s Return code: 139 261s OKs: 0 261s Standard error: 261s Segmentation fault (core dumped) 266s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 266s 139 266s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 266s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_super_cell.py" [FAIL] 7.6s 266s Time: 7.64 266s Return code: 139 266s OKs: 0 266s Standard error: 266s Segmentation fault (core dumped) 269s Standard error: 269s Segmentation fault (core dumped) 269s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 269s 139 269s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 269s libtbx.python "/usr/lib/python3/dist-packages/cctbx/adptbx/boost_python/tst_adptbx.py" [FAIL] 7.7s 269s Time: 7.73 269s Return code: 139 269s OKs: 0 269s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_chemical_elements.py" [OK] 0.1s 269s Time: 0.09 269s Return code: 0 269s OKs: 1 269s Standard out: 269s OK 272s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 272s 139 272s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 272s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/boost_python/tst_miller.py" [FAIL] 6.5s 272s Time: 6.54 272s Return code: 139 272s OKs: 0 272s Standard error: 272s Segmentation fault (core dumped) 272s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_henke.py" [OK] 0.1s 272s Time: 0.10 272s Return code: 0 272s OKs: 1 272s Standard out: 272s OK 272s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_icsd_radii.py" [OK] 0.1s 272s Time: 0.10 272s Return code: 0 272s OKs: 1 272s Standard out: 272s OK 273s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_covalent_radii.py" [OK] 0.1s 273s Time: 0.10 273s Return code: 0 273s OKs: 1 273s Standard out: 273s OK 273s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_neutron.py" [OK] 0.1s 273s Time: 0.10 273s Return code: 0 273s OKs: 1 273s Standard out: 273s OK 273s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_sasaki.py" [OK] 0.1s 273s Time: 0.09 273s Return code: 0 273s OKs: 1 273s Standard out: 273s OK 273s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_tiny_pse.py" [OK] 0.1s 273s Time: 0.09 273s Return code: 0 273s OKs: 1 273s Standard out: 273s OK 273s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_wavelengths.py" [OK] 0.1s 273s Time: 0.10 273s Return code: 0 273s OKs: 1 273s Standard out: 273s OK 275s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 275s 139 275s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 275s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_xray_scattering.py" [FAIL] 6.2s 275s Time: 6.15 275s Return code: 139 275s OKs: 0 275s Standard error: 275s Segmentation fault (core dumped) 278s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 278s 139 278s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 278s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_formula.py" [FAIL] 5.3s 278s Time: 5.34 278s Return code: 139 278s OKs: 0 278s Standard error: 278s Segmentation fault (core dumped) 281s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 281s 139 281s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 281s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_attenuation_coefficient.py" [FAIL] 5.8s 281s Time: 5.83 281s Return code: 139 281s OKs: 0 281s Standard error: 281s Segmentation fault (core dumped) 284s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 284s 139 284s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 284s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/boost_python/tst_maptbx.py" [FAIL] 6.1s 284s Time: 6.14 284s Return code: 139 284s OKs: 0 284s Standard error: 284s Segmentation fault (core dumped) 289s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 289s 139 289s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 289s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_bcr.py" [FAIL] 7.4s 289s Standard error: 289s Segmentation fault (core dumped) 289s Time: 7.43 289s Return code: 139 289s OKs: 0 292s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 292s 139 292s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 292s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_loft.py" [FAIL] 7.3s 292s Time: 7.35 292s Return code: 139 292s OKs: 0 292s Standard error: 292s Segmentation fault (core dumped) 295s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 295s 139 295s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 295s libtbx.python "/usr/lib/python3/dist-packages/cctbx/dmtbx/boost_python/tst_dmtbx.py" [FAIL] 6.1s 295s Time: 6.09 295s Return code: 139 295s OKs: 0 295s Standard error: 295s Segmentation fault (core dumped) 298s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 298s 139 298s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 298s libtbx.python "/usr/lib/python3/dist-packages/cctbx/translation_search/boost_python/tst_translation_search.py" [FAIL] 6.0s 298s Time: 6.03 298s Return code: 139 298s OKs: 0 298s Standard error: 298s Segmentation fault (core dumped) 298s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_proxy_registry.py" [OK] 0.2s 298s Time: 0.24 298s Return code: 0 298s OKs: 1 298s Standard out: 298s OK 299s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_nonbonded_overlaps.py" [OK] 0.8s 299s Time: 0.82 299s Return code: 0 299s OKs: 0 299s Standard out: 299s chem_data not present, skipping 300s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py" [OK] 0.7s 300s Time: 0.74 300s Return code: 0 300s OKs: 0 300s Standard out: 300s Test skipped, need monomer library 301s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 301s 139 301s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 301s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_ext.py" [FAIL] 6.2s 301s Time: 6.24 301s Return code: 139 301s OKs: 0 301s Standard error: 301s Segmentation fault (core dumped) 301s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_motif.py" [OK] 0.3s 301s Time: 0.25 301s Return code: 0 301s OKs: 0 301s Standard out: 301s u+s,u,s: 0.21 0.19 0.02 304s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 304s 139 304s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 304s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py" [FAIL] 4.3s 304s Time: 4.32 304s Return code: 139 304s OKs: 0 304s Standard error: 304s Segmentation fault (core dumped) 304s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_math_module.py" [OK] 0.1s 304s Time: 0.13 304s Return code: 0 304s OKs: 1 304s Standard out: 304s OK 307s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 307s 139 307s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 307s libtbx.python "/usr/lib/python3/dist-packages/cctbx/adp_restraints/tst_ext.py" [FAIL] 6.1s 307s Standard error: 307s Segmentation fault (core dumped) 307s Time: 6.06 307s Return code: 139 307s OKs: 0 310s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 310s 139 310s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 310s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_krivy_gruber.py" --Quick [FAIL] 6.1s 310s Time: 6.06 310s Return code: 139 310s OKs: 0 310s Standard error: 310s Segmentation fault (core dumped) 310s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py" [OK] 0.2s 310s Time: 0.19 310s Return code: 0 310s OKs: 1 310s Standard out: 310s Skipping exercise(): input file not available 310s OK 313s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 313s 139 313s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 313s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx.py" [FAIL] 5.7s 313s Time: 5.71 313s Return code: 139 313s OKs: 0 313s Standard error: 313s Segmentation fault (core dumped) 316s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 316s 139 316s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 316s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py" [FAIL] 5.7s 316s Time: 5.69 316s Return code: 139 316s OKs: 0 316s Standard error: 316s Segmentation fault (core dumped) 319s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 319s 139 319s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 319s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_denominators.py" P31 [FAIL] 5.8s 319s Time: 5.83 319s Return code: 139 319s OKs: 0 319s Standard error: 319s Segmentation fault (core dumped) 322s Standard error: 322s Segmentation fault (core dumped) 322s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 322s 139 322s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 322s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py" [FAIL] 5.6s 322s Time: 5.57 322s Return code: 139 322s OKs: 0 325s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 325s 139 325s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 325s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py" [FAIL] 5.7s 325s Time: 5.74 325s Return code: 139 325s OKs: 0 325s Standard error: 325s Segmentation fault (core dumped) 328s Standard error: 328s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 328s 139 328s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 328s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints.py" P3 [FAIL] 6.2s 328s Time: 6.18 328s Return code: 139 328s OKs: 0 328s Segmentation fault (core dumped) 328s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_site_constraints.py" [OK] 0.4s 328s Time: 0.39 328s Return code: 0 328s OKs: 0 328s Standard out: 328s Skipping process_zeolite_atlas(): input file not available 328s u+s,u,s: 0.33 0.32 0.01 331s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 331s 139 331s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 331s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py" [FAIL] 6.1s 331s Time: 6.14 331s Return code: 139 331s OKs: 0 331s Standard error: 331s Segmentation fault (core dumped) 334s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 334s 139 334s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 334s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reflection_statistics.py" [FAIL] 5.8s 334s Time: 5.84 334s Return code: 139 334s OKs: 0 334s Standard error: 334s Segmentation fault (core dumped) 337s Standard error: 337s Segmentation fault (core dumped) 337s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 337s 139 337s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 337s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_harker.py" [FAIL] 6.3s 337s Time: 6.34 337s Return code: 139 337s OKs: 0 340s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 340s 139 340s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 340s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py" [FAIL] 6.2s 340s Time: 6.16 340s Return code: 139 340s OKs: 0 340s Standard error: 340s Segmentation fault (core dumped) 344s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 344s 139 344s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 344s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_twin_target.py" [FAIL] 6.5s 344s Time: 6.55 344s Return code: 139 344s OKs: 0 344s Standard error: 344s Segmentation fault (core dumped) 347s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 347s 139 347s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 347s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/symbol_confidence.py" [FAIL] 6.4s 347s Time: 6.43 347s Return code: 139 347s OKs: 0 347s Standard error: 347s Segmentation fault (core dumped) 350s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 350s 139 350s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 350s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/bravais_types.py" [FAIL] 6.2s 350s Time: 6.19 350s Return code: 139 350s OKs: 0 350s Standard error: 350s Segmentation fault (core dumped) 353s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 353s 139 353s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 353s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_lookup_utils.py" [FAIL] 6.3s 353s Time: 6.33 353s Return code: 139 353s OKs: 0 353s Standard error: 353s Segmentation fault (core dumped) 356s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 356s 139 356s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 356s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal.py" I41/acd [FAIL] 6.3s 356s Time: 6.32 356s Return code: 139 356s OKs: 0 356s Standard error: 356s Segmentation fault (core dumped) 359s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 359s 139 359s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 359s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_direct_space_asu.py" I41/acd [FAIL] 6.3s 359s Time: 6.34 359s Return code: 139 359s OKs: 0 359s Standard error: 359s Segmentation fault (core dumped) 362s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 362s 139 362s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 362s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pair_asu_table.py" [FAIL] 6.3s 362s Time: 6.28 362s Return code: 139 362s OKs: 0 362s Standard error: 362s Segmentation fault (core dumped) 363s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_coordination_sequences.py" [OK] 0.4s 363s Time: 0.36 363s Return code: 0 363s OKs: 1 363s Standard out: 363s Skipping exercise(): input file not available 363s OK 365s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 365s 139 365s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 365s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py" [FAIL] 6.0s 365s Time: 6.01 365s Return code: 139 365s OKs: 0 365s Standard error: 365s Segmentation fault (core dumped) 369s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 369s 139 369s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 369s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_close_packing.py" R-3mr [FAIL] 6.0s 369s Time: 5.97 369s Return code: 139 369s OKs: 0 369s Standard error: 369s Segmentation fault (core dumped) 371s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 371s 139 371s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 371s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py" P31 [FAIL] 6.2s 371s Time: 6.17 371s Return code: 139 371s OKs: 0 371s Standard error: 371s Segmentation fault (core dumped) 375s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 375s 139 375s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 375s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller.py" P31 [FAIL] 6.2s 375s Time: 6.19 375s Return code: 139 375s OKs: 0 375s Standard error: 375s Segmentation fault (core dumped) 375s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_mem_2.py" [OK] 0.3s 375s Time: 0.29 375s Return code: 0 375s OKs: 0 375s Standard out: 375s Skipping test: phenix not available 379s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 379s 139 379s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 379s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_mem.py" [FAIL] 7.1s 379s Time: 7.05 379s Return code: 139 379s OKs: 0 379s Standard error: 379s Segmentation fault (core dumped) 382s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 382s 139 382s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 382s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py" P312 [FAIL] 6.7s 382s Time: 6.68 382s Return code: 139 382s OKs: 0 382s Standard error: 382s Segmentation fault (core dumped) 385s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 385s 139 385s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 385s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_triplet_generator.py" P41 [FAIL] 6.7s 385s Time: 6.73 385s Return code: 139 385s OKs: 0 385s Standard error: 385s Segmentation fault (core dumped) 389s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 389s 139 389s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 389s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_emma.py" P31 [FAIL] 6.9s 389s Standard error: 389s Segmentation fault (core dumped) 389s Time: 6.86 389s Return code: 139 389s OKs: 0 392s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 392s 139 392s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 392s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_expand_to_p1.py" P31 [FAIL] 6.5s 392s Time: 6.55 392s Return code: 139 392s OKs: 0 392s Standard error: 392s Segmentation fault (core dumped) 395s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 395s 139 395s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 395s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_change_basis.py" P31 [FAIL] 6.2s 395s Time: 6.18 395s Return code: 139 395s OKs: 0 395s Standard error: 395s Segmentation fault (core dumped) 398s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 398s 139 398s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 398s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_wilson_plot.py" P31 [FAIL] 6.3s 398s Time: 6.33 398s Return code: 139 398s OKs: 0 398s Standard error: 398s Segmentation fault (core dumped) 401s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 401s 139 401s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 401s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_derivatives.py" P31 [FAIL] 6.2s 401s Time: 6.21 401s Return code: 139 401s OKs: 0 401s Standard error: 401s Segmentation fault (core dumped) 404s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 404s 139 404s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 404s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_fast_gradients.py" P31 [FAIL] 6.1s 404s Time: 6.14 404s Return code: 139 404s OKs: 0 404s Standard error: 404s Segmentation fault (core dumped) 407s Standard error: 407s Segmentation fault (core dumped) 407s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 407s 139 407s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 407s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F P31 [FAIL] 6.2s 407s Time: 6.16 407s Return code: 139 407s OKs: 0 407s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 407s 139 407s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 407s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F_sq P31 [FAIL] 3.1s 407s Time: 3.05 407s Return code: 139 407s OKs: 0 407s Standard error: 407s Segmentation fault (core dumped) 411s Standard error: 411s Segmentation fault (core dumped) 411s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 411s 139 411s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 411s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py" P31 [FAIL] 3.5s 411s Time: 3.52 411s Return code: 139 411s OKs: 0 414s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 414s 139 414s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 414s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py" Pmmm [FAIL] 6.6s 414s Time: 6.61 414s Return code: 139 414s OKs: 0 414s Standard error: 414s Segmentation fault (core dumped) 417s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 417s 139 417s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 417s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py" [FAIL] 6.3s 417s Time: 6.34 417s Return code: 139 417s OKs: 0 417s Standard error: 417s Segmentation fault (core dumped) 420s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 420s 139 420s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 420s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation.py" [FAIL] 6.2s 420s Time: 6.25 420s Return code: 139 420s OKs: 0 420s Standard error: 420s Segmentation fault (core dumped) 423s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 423s 139 423s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 423s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation_2.py" [FAIL] 6.2s 423s Time: 6.20 423s Return code: 139 423s OKs: 0 423s Standard error: 423s Segmentation fault (core dumped) 428s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 428s 139 428s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 428s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_loc_res.py" [FAIL] 7.4s 428s Time: 7.38 428s Return code: 139 428s OKs: 0 428s Standard error: 428s Segmentation fault (core dumped) 431s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 431s 139 431s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 431s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_target_and_gradients.py" [FAIL] 7.2s 431s Time: 7.20 431s Return code: 139 431s OKs: 0 431s Standard error: 431s Segmentation fault (core dumped) 433s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 433s 139 433s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 433s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py" P31 [FAIL] 5.9s 433s Time: 5.92 433s Return code: 139 433s OKs: 0 433s Standard error: 433s Segmentation fault (core dumped) 437s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 437s 139 437s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 437s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grouped_data.py" P31 [FAIL] 6.1s 437s Time: 6.11 437s Return code: 139 437s OKs: 0 437s Standard error: 437s Segmentation fault (core dumped) 440s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 440s 139 440s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 440s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_fft_map.py" P31 [FAIL] 6.5s 440s Time: 6.48 440s Return code: 139 440s OKs: 0 440s Standard error: 440s Segmentation fault (core dumped) 443s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 443s 139 443s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 443s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sampled_model_density.py" P31 [FAIL] 6.3s 443s Time: 6.28 443s Return code: 139 443s OKs: 0 443s Standard error: 443s Segmentation fault (core dumped) 444s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints.py" [OK] 0.9s 444s Time: 0.85 444s Return code: 0 444s OKs: 1 444s Standard out: 444s OK 446s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 446s 139 446s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 446s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fast_nv1995.py" F222 [FAIL] 6.2s 446s Time: 6.19 446s Return code: 139 446s OKs: 0 446s Standard error: 446s Segmentation fault (core dumped) 449s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 449s 139 449s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 449s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py" [FAIL] 5.7s 449s Time: 5.66 449s Return code: 139 449s OKs: 0 449s Standard error: 449s Segmentation fault (core dumped) 450s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_pickling.py" [OK] 0.5s 450s Time: 0.55 450s Return code: 0 450s OKs: 0 450s Standard out: 450s Can not initialize monomer_library, skipping test. 453s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 453s 139 453s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 453s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_2.py" [FAIL] 7.1s 453s Time: 7.07 453s Return code: 139 453s OKs: 0 453s Standard error: 453s Segmentation fault (core dumped) 456s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 456s 139 456s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 456s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_french_wilson.py" [FAIL] 6.4s 456s Standard error: 456s Segmentation fault (core dumped) 456s Time: 6.37 456s Return code: 139 456s OKs: 0 457s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/tst_cns_epsilon.py" P31 [OK] 0.3s 457s Time: 0.25 457s Return code: 0 457s OKs: 0 457s Standard out: 457s Skipping tests: cns not available. 457s u+s,u,s: 0.21 0.21 0.00 457s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/tst_cns_hl.py" P31 [OK] 0.3s 457s Time: 0.28 457s Return code: 0 457s OKs: 0 457s Standard out: 457s Skipping tests: cns not available. 457s u+s,u,s: 0.24 0.22 0.02 457s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/run_shelx76.py" P31 [OK] 0.4s 457s Time: 0.36 457s Return code: 0 457s OKs: 0 457s Standard out: 457s shelx76 not available. 460s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 460s 139 460s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 460s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/make_cns_input.py" P31 [FAIL] 6.4s 460s Time: 6.37 460s Return code: 139 460s OKs: 0 460s Standard error: 460s Segmentation fault (core dumped) 463s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 463s 139 463s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 463s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pointgroup_tools.py" [FAIL] 5.5s 463s Time: 5.50 463s Return code: 139 463s OKs: 0 463s Standard error: 463s Segmentation fault (core dumped) 466s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 466s 139 466s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 466s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/sub_lattice_tools.py" [FAIL] 6.3s 466s Time: 6.25 466s Return code: 139 466s OKs: 0 466s Standard error: 466s Segmentation fault (core dumped) 469s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 469s 139 469s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 469s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py" [FAIL] 6.0s 469s Time: 5.98 469s Return code: 139 469s OKs: 0 469s Standard error: 469s Segmentation fault (core dumped) 472s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 472s 139 472s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 472s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/cosets.py" [FAIL] 6.3s 472s Standard error: 472s Segmentation fault (core dumped) 472s Time: 6.25 472s Return code: 139 472s OKs: 0 475s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 475s 139 475s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 475s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_pg_tools.py" [FAIL] 6.5s 475s Time: 6.47 475s Return code: 139 475s OKs: 0 475s Standard error: 475s Segmentation fault (core dumped) 478s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 478s 139 478s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 478s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_twin_laws.py" [FAIL] 6.4s 478s Time: 6.38 478s Return code: 139 478s OKs: 0 478s Standard error: 478s Segmentation fault (core dumped) 481s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 481s 139 481s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 481s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_find_best_cell.py" [FAIL] 6.1s 481s Time: 6.08 481s Return code: 139 481s OKs: 0 481s Standard error: 481s Segmentation fault (core dumped) 485s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 485s 139 485s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 485s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_amplitude_normalisation.py" [FAIL] 6.2s 485s Time: 6.20 485s Return code: 139 485s OKs: 0 485s Standard error: 485s Segmentation fault (core dumped) 488s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 488s 139 488s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 488s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_statistics_graphs.py" [FAIL] 6.5s 488s Time: 6.49 488s Return code: 139 488s OKs: 0 488s Standard error: 488s Segmentation fault (core dumped) 491s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 491s 139 491s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 491s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_web_change_basis.py" [FAIL] 6.1s 491s Time: 6.07 491s Return code: 139 491s OKs: 0 491s Standard error: 491s Segmentation fault (core dumped) 494s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 494s 139 494s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 494s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py" [FAIL] 5.8s 494s Time: 5.83 494s Return code: 139 494s OKs: 0 494s Standard error: 494s Segmentation fault (core dumped) 497s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 497s 139 497s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 497s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py" [FAIL] 6.0s 497s Time: 5.99 497s Return code: 139 497s OKs: 0 497s Standard error: 497s Segmentation fault (core dumped) 500s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 500s 139 500s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 500s libtbx.python "/usr/lib/python3/dist-packages/cctbx/masks/tests/tst_flood_fill.py" [FAIL] 6.1s 500s Time: 6.08 500s Return code: 139 500s OKs: 0 500s Standard error: 500s Segmentation fault (core dumped) 500s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/observations/tst_observations.py" [OK] 0.3s 500s Time: 0.28 500s Return code: 0 500s OKs: 1 500s Standard out: 500s OK 503s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 503s 139 503s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 503s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_r_free_utils.py" [FAIL] 6.3s 503s Time: 6.28 503s Return code: 139 503s OKs: 0 503s Standard error: 503s Segmentation fault (core dumped) 506s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 506s 139 506s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 506s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_ccp.py" [FAIL] 6.3s 506s Time: 6.30 506s Return code: 139 506s OKs: 0 506s Standard error: 506s Segmentation fault (core dumped) 510s Standard error: 510s Segmentation fault (core dumped) 510s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 510s 139 510s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 510s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_mask.py" [FAIL] 6.6s 510s Time: 6.58 510s Return code: 139 510s OKs: 0 513s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 513s 139 513s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 513s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py" [FAIL] 6.7s 513s Time: 6.72 513s Return code: 139 513s OKs: 0 513s Standard error: 513s Segmentation fault (core dumped) 516s Standard error: 516s Segmentation fault (core dumped) 516s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 516s 139 516s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 516s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_asymmetric_map.py" [FAIL] 6.7s 516s Time: 6.71 516s Return code: 139 516s OKs: 0 519s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 519s 139 519s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 519s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py" [FAIL] 6.5s 519s Time: 6.47 519s Return code: 139 519s OKs: 0 519s Standard error: 519s Segmentation fault (core dumped) 523s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 523s 139 523s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 523s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py" [FAIL] 6.6s 523s Time: 6.65 523s Return code: 139 523s OKs: 0 523s Standard error: 523s Segmentation fault (core dumped) 526s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 526s 139 526s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 526s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_curves.py" [FAIL] 6.7s 526s Time: 6.68 526s Return code: 139 526s OKs: 0 526s Standard error: 526s Segmentation fault (core dumped) 529s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 529s 139 529s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 529s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py" [FAIL] 6.4s 529s Time: 6.39 529s Return code: 139 529s OKs: 0 529s Standard error: 529s Segmentation fault (core dumped) 530s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_maptbx_box.py" [OK] 0.8s 530s Time: 0.78 530s Return code: 0 530s OKs: 0 530s Standard out: 530s phenix is not available, skipping test 531s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_create_models_or_maps.py" [OK] 0.8s 531s Time: 0.78 531s Return code: 0 531s OKs: 1 531s Standard out: 531s Skipping exercise(): chem_data directory not available 531s OK 533s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 533s 139 533s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 533s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py" [FAIL] 6.8s 533s Time: 6.75 533s Return code: 139 533s OKs: 0 533s Standard error: 533s Segmentation fault (core dumped) 536s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 536s 139 536s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 536s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sphericity.py" [FAIL] 5.4s 536s Time: 5.40 536s Return code: 139 536s OKs: 0 536s Standard error: 536s Segmentation fault (core dumped) 537s libtbx.python "/usr/lib/python3/dist-packages/cctbx/merging/brehm_diederichs.py" [OK] 0.3s 537s Time: 0.26 537s Return code: 0 537s OKs: 1 537s Standard out: 537s OK 537s libtbx.python "/usr/lib/python3/dist-packages/cctbx/multipolar/regression/tst_multipolar.py" [OK] 0.2s 537s Time: 0.18 537s Return code: 0 537s OKs: 3 537s Standard out: 537s OK 537s 0 537s 1 537s 2 537s OK 537s Skipping exercise(): chem_data directory not available 537s OK 540s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 540s 139 540s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 540s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_statistics.py" [FAIL] 6.7s 540s Time: 6.67 540s Return code: 139 540s OKs: 0 540s Standard error: 540s Segmentation fault (core dumped) 543s Standard error: 543s Segmentation fault (core dumped) 543s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 543s 139 543s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 543s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity.py" [FAIL] 6.2s 543s Time: 6.22 543s Return code: 139 543s OKs: 0 546s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 546s 139 546s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 546s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity_allsym.py" [FAIL] 6.6s 546s Standard error: 546s Segmentation fault (core dumped) 546s Time: 6.56 546s Return code: 139 546s OKs: 0 547s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_modifications.py" [OK] 0.7s 547s Time: 0.75 547s Return code: 0 547s OKs: 1 547s Standard out: 547s Can not initialize monomer_library, skipping test. 547s OK 552s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 552s 1 552s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 552s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py" [FAIL] 8.9s 552s Time: 8.92 552s Return code: 1 552s OKs: 0 552s Standard error: 552s Segmentation fault (core dumped) 552s Traceback (most recent call last): 552s File "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py", line 140, in 552s exercise() 552s ~~~~~~~~^^ 552s File "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py", line 126, in exercise 552s assert not easy_run.call(cmd) 552s ^^^^^^^^^^^^^^^^^^^^^^ 552s AssertionError 554s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_wavelength_units.py" [OK] 2.2s 554s Time: 2.23 554s Return code: 0 554s OKs: 1 554s Standard out: 554s OK 554s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 554s 139 554s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 554s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py" [FAIL] 7.4s 554s Time: 7.37 554s Return code: 139 554s OKs: 0 554s Standard error: 554s Segmentation fault (core dumped) 558s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 558s 139 558s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 558s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fcalc_fft_stability.py" [EXPECTED UNSTABLE] 3.5s 558s Time: 3.50 558s Return code: 139 558s OKs: 0 558s Standard error: 558s Segmentation fault (core dumped) 558s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_ext.py" [OK] 0.1s 558s Time: 0.10 558s Return code: 0 558s OKs: 1 558s Standard out: 558s OK 558s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_equivalence.py" [OK] 0.1s 558s Time: 0.11 558s Return code: 0 558s OKs: 1 558s Standard out: 558s OK 559s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_read.py" [OK] 0.9s 559s Time: 0.86 559s Return code: 0 559s OKs: 1 559s Standard out: 559s OK 559s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_cout.py" [OK] 0.5s 559s Time: 0.54 559s Return code: 0 559s OKs: 1 559s Standard out: 559s OK 560s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_show_calls.py" [OK] 0.5s 560s Time: 0.47 560s Return code: 0 560s OKs: 1 560s Standard out: 560s OK 560s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 560s 139 560s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 560s libtbx.python "/usr/lib/python3/dist-packages/cma_es/tst_cma_es.py" [FAIL] 6.2s 560s Time: 6.18 560s Return code: 139 560s OKs: 0 560s Standard error: 560s Segmentation fault (core dumped) 567s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_command_line.py" [OK] 7.2s 567s Time: 7.18 567s Return code: 0 567s OKs: 1 567s Standard out: 567s fable.split "/usr/lib/python3/dist-packages/fable/test/valid/subroutine_1.f" 567s fable.read --each "/usr/lib/python3/dist-packages/fable/test/valid/write_star.f" 567s fable.read --warnings "/usr/lib/python3/dist-packages/fable/test/valid/equivalence_mixed.f" 567s fable.show_calls --write-graphviz-dot=tmp.dot --top-procedure=sub "/usr/lib/python3/dist-packages/fable/test/valid/external_arg_layers.f" 567s fable.show_calls "/usr/lib/python3/dist-packages/fable/test/valid/dependency_cycle.f" 567s fable.fem_include_search_paths --with-quotes 567s fable.cout --each "/usr/lib/python3/dist-packages/fable/test/valid/write_star.f" 567s fable.cout "/usr/lib/python3/dist-packages/fable/test/valid/common_variants.f" 567s fable.cout "/usr/lib/python3/dist-packages/fable/test/valid/subroutine_3.f" --top-procedure=sub3 --fortran-file-comments 567s fable.cout --compile "/usr/lib/python3/dist-packages/fable/test/valid/write_star.f" 567s fable.cout --namespace=test --run "/usr/lib/python3/dist-packages/fable/test/valid/write_star.f" 567s fable.cout --example 567s fable.cout /usr/lib/python3/dist-packages/fable/test/valid/sf.f --namespace example --run 567s fable.cout "/usr/lib/python3/dist-packages/fable/test/valid/dynamic_parameters_1.f" --dynamic-parameter="int root_size=1" 567s OK 571s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_cout_compile.py" stop [OK] 4.0s 571s Time: 3.99 571s Return code: 0 571s OKs: 1 571s Standard out: 571s g++ -o "stop_bare_fem" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "stop_bare_fem.cpp" 571s g++ -o "stop_integer_fem" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "stop_integer_fem.cpp" 571s g++ -o "stop_string_fem" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "stop_string_fem.cpp" 571s OK 571s usr+sys time: 0.12 seconds 571s wall clock time: 3.96 seconds 574s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_separate_files.py" [OK] 13.4s 574s Time: 13.43 574s Return code: 0 574s OKs: 1 574s Standard out: 574s g++ -o "top.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.cpp" 574s g++ -o "functions.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "functions.cpp" 574s g++ -o "tst_separate_files" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.o" "functions.o" 574s g++ -o "top.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.cpp" 574s g++ -o "subs.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "subs.cpp" 574s g++ -o "tst_separate_files" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.o" "subs.o" 574s g++ -o "top.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.cpp" 574s g++ -o "subs.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "subs.cpp" 574s g++ -o "functions.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "functions.cpp" 574s g++ -o "tst_separate_files" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.o" "subs.o" "functions.o" 574s g++ -o "top.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.cpp" 574s g++ -o "subs.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "subs.cpp" 574s g++ -o "tst_separate_files" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.o" "subs.o" 574s g++ -o "top.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.cpp" 574s g++ -o "subs.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "subs.cpp" 574s g++ -o "functions.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "functions.cpp" 574s g++ -o "tst_separate_files" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.o" "subs.o" "functions.o" 574s OK 574s usr+sys time: 0.26 seconds 574s wall clock time: 13.40 seconds 574s libtbx.python "/usr/lib/python3/dist-packages/gltbx/tst_ellipsoids.py" [OK] 0.4s 574s Time: 0.36 574s Return code: 0 574s OKs: 1 574s Standard out: 574s OK 577s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 577s 139 577s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 577s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mrc_io.py" [FAIL] 3.2s 577s Time: 3.24 577s Return code: 139 577s OKs: 0 577s Standard error: 577s Segmentation fault (core dumped) 578s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_wildcard.py" [OK] 0.1s 578s Time: 0.08 578s Return code: 0 578s OKs: 1 578s Standard out: 578s OK 579s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_io.py" [OK] 8.4s 579s Time: 8.44 579s Return code: 0 579s OKs: 1 579s Standard out: 579s OK 579s usr+sys time: 0.18 seconds 579s wall clock time: 8.41 seconds 579s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_simple_parser.py" [OK] 0.1s 579s Time: 0.07 579s Return code: 0 579s OKs: 1 579s Standard out: 579s OK 581s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 581s 139 581s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 581s libtbx.python "/usr/lib/python3/dist-packages/iotbx/gui_tools/tst.py" [FAIL] 3.7s 581s Time: 3.71 581s Return code: 139 581s OKs: 0 581s Standard error: 581s Segmentation fault (core dumped) 582s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_cif_inputs.py" [OK] 0.3s 582s Time: 0.27 582s Return code: 0 582s OKs: 1 582s Standard out: 582s OK 584s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 584s 139 584s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 584s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_phil.py" [FAIL] 4.9s 584s Time: 4.87 584s Return code: 139 584s OKs: 0 584s Standard error: 584s Segmentation fault (core dumped) 588s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 588s 139 588s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 588s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_data_manager.py" [FAIL] 6.8s 588s Time: 6.85 588s Return code: 139 588s OKs: 0 588s Standard error: 588s Segmentation fault (core dumped) 592s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 592s 139 592s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 592s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager_wrapping.py" [FAIL] 7.3s 592s Time: 7.27 592s Return code: 139 592s OKs: 0 592s Standard error: 592s Segmentation fault (core dumped) 592s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager.py" [OK] 0.8s 592s Time: 0.81 592s Return code: 0 592s OKs: 1 592s Standard out: 592s Skip test_01, chem_data not available 592s OK 593s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_2.py" [OK] 0.8s 593s Time: 0.83 593s Return code: 0 593s OKs: 0 593s Standard out: 593s chem_data is not available, skipping 594s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_3.py" [OK] 0.8s 594s Time: 0.79 594s Return code: 0 594s OKs: 1 594s Standard out: 594s Skipped: Requires phenix module 594s OK 594s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_4.py" [OK] 0.2s 594s Time: 0.18 594s Return code: 0 594s OKs: 1 594s Standard out: 594s Skipping tst_map_model_manager_4 tests becuase Phenix is not available. 594s OK 595s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 595s 139 595s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 595s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager.py" [FAIL] 6.3s 595s Time: 6.35 595s Return code: 139 595s OKs: 0 595s Standard error: 595s Segmentation fault (core dumped) 595s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5.py" [OK] 0.8s 595s Time: 0.76 595s Return code: 0 595s OKs: 1 595s Standard out: 595s Skip test_01, chem_data not available 595s OK 595s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py" [OK] 0.7s 595s Time: 0.72 595s Return code: 0 595s OKs: 1 595s Standard out: 595s Skip test_01, chem_data not available 595s OK 596s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_call_consistency.py" [OK] 0.8s 596s Time: 0.76 596s Return code: 0 596s OKs: 1 596s Standard out: 596s 596s Expected and actual args in calls for with_bounds 596s 596s box.with_bounds.__init__ : 596s Expected :['log', 'lower_bounds', 'map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'upper_bounds', 'use_cubic_boxing', 'wrapping'] 596s Found : ['log', 'lower_bounds', 'map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'upper_bounds', 'use_cubic_boxing', 'wrapping'] 596s 596s box_all_maps_with_bounds_and_shift_origin : 596s Expected :['extract_box', 'lower_bounds', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'upper_bounds', 'use_cubic_boxing'] 596s Found : ['boundary_to_smoothing_ratio', 'extract_box', 'lower_bounds', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'upper_bounds', 'use_cubic_boxing'] 596s 596s extract_all_maps_with_bounds : 596s Expected :['lower_bounds', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'upper_bounds', 'use_cubic_boxing'] 596s Found : ['boundary_to_smoothing_ratio', 'lower_bounds', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'upper_bounds', 'use_cubic_boxing'] 596s 596s Expected and actual args in calls for around_model 596s 596s box.around_model.__init__ : 596s Expected :['box_cushion', 'log', 'map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'use_cubic_boxing', 'wrapping'] 596s Found : ['box_cushion', 'log', 'map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'use_cubic_boxing', 'wrapping'] 596s 596s box_all_maps_around_model_and_shift_origin : 596s Expected :['box_cushion', 'extract_box', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'select_unique_by_ncs', 'selection', 'selection_string', 'self', 'stay_inside_current_map', 'use_cubic_boxing'] 596s Found : ['boundary_to_smoothing_ratio', 'box_cushion', 'extract_box', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'select_unique_by_ncs', 'selection', 'selection_string', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'use_cubic_boxing'] 596s 596s extract_all_maps_around_model : 596s Expected :['box_cushion', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'select_unique_by_ncs', 'selection', 'selection_string', 'self', 'stay_inside_current_map', 'use_cubic_boxing'] 596s Found : ['boundary_to_smoothing_ratio', 'box_cushion', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'select_unique_by_ncs', 'selection', 'selection_string', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'use_cubic_boxing'] 596s 596s Expected and actual args in calls for around_density 596s 596s box.around_density.__init__ : 596s Expected :['box_cushion', 'get_half_height_width', 'log', 'map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'threshold', 'use_cubic_boxing', 'wrapping'] 596s Found : ['box_cushion', 'get_half_height_width', 'log', 'map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'threshold', 'use_cubic_boxing', 'wrapping'] 596s 596s box_all_maps_around_density_and_shift_origin : 596s Expected :['box_cushion', 'extract_box', 'get_half_height_width', 'map_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'threshold', 'use_cubic_boxing'] 596s Found : ['boundary_to_smoothing_ratio', 'box_cushion', 'extract_box', 'get_half_height_width', 'map_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'threshold', 'use_cubic_boxing'] 596s 596s extract_all_maps_around_density : 596s Expected :['box_cushion', 'get_half_height_width', 'map_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'threshold', 'use_cubic_boxing'] 596s Found : ['boundary_to_smoothing_ratio', 'box_cushion', 'get_half_height_width', 'map_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'threshold', 'use_cubic_boxing'] 596s 596s Expected and actual args in calls for around_mask 596s 596s box.around_mask.__init__ : 596s Expected :['box_cushion', 'log', 'map_manager', 'mask_as_map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'use_cubic_boxing', 'wrapping'] 596s Found : ['box_cushion', 'log', 'map_manager', 'mask_as_map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'use_cubic_boxing', 'wrapping'] 596s 596s box_all_maps_around_mask_and_shift_origin : 596s Expected :['box_cushion', 'extract_box', 'mask_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'use_cubic_boxing'] 596s Found : ['boundary_to_smoothing_ratio', 'box_cushion', 'extract_box', 'mask_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'use_cubic_boxing'] 596s 596s extract_all_maps_around_mask : 596s Expected :['box_cushion', 'mask_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'use_cubic_boxing'] 596s Found : ['boundary_to_smoothing_ratio', 'box_cushion', 'mask_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'use_cubic_boxing'] 596s 596s Expected and actual args in calls for around_unique 596s 596s box.around_unique.__init__ : 596s Expected :['box_cushion', 'chain_type', 'keep_low_density', 'keep_this_region_only', 'log', 'map_manager', 'mask_expand_ratio', 'model', 'molecular_mass', 'regions_to_keep', 'require_match_unit_cell_crystal_symmetry', 'residues_per_region', 'resolution', 'self', 'sequence', 'soft_mask', 'solvent_content', 'stay_inside_current_map', 'symmetry', 'target_ncs_au_model', 'use_cubic_boxing', 'use_symmetry_in_extract_unique', 'wrapping'] 596s Found : ['box_cushion', 'chain_type', 'keep_low_density', 'keep_this_region_only', 'log', 'map_manager', 'mask_expand_ratio', 'model', 'molecular_mass', 'regions_to_keep', 'require_match_unit_cell_crystal_symmetry', 'residues_per_region', 'resolution', 'self', 'sequence', 'soft_mask', 'solvent_content', 'stay_inside_current_map', 'symmetry', 'target_ncs_au_model', 'use_cubic_boxing', 'use_symmetry_in_extract_unique', 'wrapping'] 596s 596s box_all_maps_around_unique_and_shift_origin : 596s Expected :['box_cushion', 'chain_type', 'extract_box', 'keep_low_density', 'keep_this_region_only', 'mask_expand_ratio', 'molecular_mass', 'regions_to_keep', 'require_match_unit_cell_crystal_symmetry', 'residues_per_region', 'resolution', 'self', 'sequence', 'soft_mask', 'solvent_content', 'stay_inside_current_map', 'symmetry', 'target_ncs_au_model', 'use_cubic_boxing', 'use_symmetry_in_extract_unique'] 596s Found : ['boundary_to_smoothing_ratio', 'box_cushion', 'chain_type', 'extract_box', 'keep_low_density', 'keep_this_region_only', 'mask_expand_ratio', 'molecular_mass', 'regions_to_keep', 'require_match_unit_cell_crystal_symmetry', 'residues_per_region', 'resolution', 'self', 'sequence', 'soft_mask', 'soft_mask_around_edges', 'soft_mask_radius', 'solvent_content', 'stay_inside_current_map', 'symmetry', 'target_ncs_au_model', 'use_cubic_boxing', 'use_symmetry_in_extract_unique'] 596s 596s extract_all_maps_around_unique : 596s Expected :['box_cushion', 'chain_type', 'keep_low_density', 'keep_this_region_only', 'mask_expand_ratio', 'molecular_mass', 'regions_to_keep', 'require_match_unit_cell_crystal_symmetry', 'residues_per_region', 'resolution', 'self', 'sequence', 'soft_mask', 'solvent_content', 'stay_inside_current_map', 'symmetry', 'target_ncs_au_model', 'use_cubic_boxing', 'use_symmetry_in_extract_unique'] 596s Found : ['boundary_to_smoothing_ratio', 'box_cushion', 'chain_type', 'keep_low_density', 'keep_this_region_only', 'mask_expand_ratio', 'molecular_mass', 'regions_to_keep', 'require_match_unit_cell_crystal_symmetry', 'residues_per_region', 'resolution', 'self', 'sequence', 'soft_mask', 'soft_mask_around_edges', 'soft_mask_radius', 'solvent_content', 'stay_inside_current_map', 'symmetry', 'target_ncs_au_model', 'use_cubic_boxing', 'use_symmetry_in_extract_unique'] 596s 596s Expected and actual args in calls for around_atoms 596s 596s cctbx.maptbx.mask.create_mask_around_atoms.__init__ : 596s Expected :['invert_mask', 'map_manager', 'mask_atoms_atom_radius', 'model', 'n_real', 'self', 'wrapping', 'xray_structure'] 596s Found : ['invert_mask', 'map_manager', 'mask_atoms_atom_radius', 'model', 'n_real', 'self', 'wrapping', 'xray_structure'] 596s 596s map_model_manager.create_mask_around_atoms : 596s Expected :['invert_mask', 'mask_atoms_atom_radius', 'mask_id', 'model', 'self', 'soft_mask', 'soft_mask_radius'] 596s Found : ['invert_mask', 'mask_atoms_atom_radius', 'mask_id', 'model', 'self', 'soft_mask', 'soft_mask_radius'] 596s 596s Expected and actual args in calls for around_edges 596s 596s cctbx.maptbx.mask.create_mask_around_edges.__init__ : 596s Expected :['boundary_radius', 'map_manager', 'self'] 596s Found : ['boundary_radius', 'map_manager', 'self'] 596s 596s map_model_manager.create_mask_around_edges : 596s Expected :['boundary_radius', 'mask_id', 'self'] 596s Found : ['boundary_radius', 'boundary_to_smoothing_ratio', 'mask_id', 'self', 'soft_mask_radius'] 596s 596s Expected and actual args in calls for around_density 596s 596s cctbx.maptbx.mask.create_mask_around_density.__init__ : 596s Expected :['map_manager', 'molecular_mass', 'resolution', 'self', 'sequence', 'solvent_content'] 596s Found : ['map_manager', 'molecular_mass', 'resolution', 'self', 'sequence', 'solvent_content'] 596s 596s map_model_manager.create_mask_around_density : 596s Expected :['map_id', 'mask_id', 'resolution', 'self', 'soft_mask', 'soft_mask_radius', 'solvent_content'] 596s Found : ['map_id', 'mask_id', 'resolution', 'self', 'soft_mask', 'soft_mask_radius', 'solvent_content'] 596s OK 596s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_external_sharpening_7.py" [OK] 0.7s 596s Time: 0.73 596s Return code: 0 596s OKs: 1 596s Standard out: 596s Skip test_01, chem_data not available 596s OK 596s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py" [OK] 0.8s 596s Time: 0.76 596s Return code: 0 596s OKs: 1 596s Standard out: 596s Skip test_01, chem_data not available 596s OK 597s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_tls_from_map_8.py" [OK] 0.7s 597s Time: 0.71 597s Return code: 0 597s OKs: 1 597s Standard out: 597s Skip test_01, chem_data not available 597s OK 597s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_cif.py" [OK] 0.7s 597s Time: 0.75 597s Return code: 0 597s OKs: 1 597s Standard out: 597s Skip test_01, chem_data not available 597s OK 602s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 602s 139 602s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 602s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py" [FAIL] 4.9s 602s Time: 4.86 602s Return code: 139 602s OKs: 0 602s Standard error: 602s Segmentation fault (core dumped) 603s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_local_resolution_10.py" [OK] 0.8s 603s Time: 0.80 603s Return code: 0 603s OKs: 1 603s Standard out: 603s Skip test_01, chem_data not available 603s OK 606s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 606s 139 606s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 606s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py" [FAIL] 8.7s 606s Time: 8.74 606s Return code: 139 606s OKs: 0 606s Standard error: 606s Segmentation fault (core dumped) 606s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_patterson.py" [OK] 0.1s 606s Time: 0.08 606s Return code: 0 606s OKs: 1 606s Standard out: 606s phenix_regression not available, skipping 606s OK 606s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_restraints_merge.py" [OK] 0.3s 606s Time: 0.29 606s Return code: 0 606s OKs: 0 609s Standard error: 609s Segmentation fault (core dumped) 609s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 609s 139 609s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 609s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_tools.py" [FAIL] 6.7s 609s Time: 6.65 609s Return code: 139 609s OKs: 0 609s libtbx.python "/usr/lib/python3/dist-packages/iotbx/ranges.py" [OK] 0.0s 609s Time: 0.03 609s Return code: 0 609s OKs: 1 609s Standard out: 609s OK 612s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 612s 139 612s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 612s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_atom_selections_10k.py" [FAIL] 6.0s 612s Standard error: 612s Segmentation fault (core dumped) 612s Time: 6.02 612s Return code: 139 612s OKs: 0 612s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_poscar.py" [OK] 0.1s 612s Time: 0.07 612s Return code: 0 612s OKs: 1 612s Standard out: 612s Skipping POSCAR tests: input files not available 612s OK 616s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 616s 139 616s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 616s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py" [FAIL] 6.4s 616s Time: 6.40 616s Return code: 139 616s OKs: 0 616s Standard error: 616s Segmentation fault (core dumped) 619s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 619s 139 619s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 619s libtbx.python "/usr/lib/python3/dist-packages/iotbx/kriber/tst_strudat.py" [FAIL] 6.4s 619s Time: 6.43 619s Return code: 139 619s OKs: 0 619s Standard error: 619s Segmentation fault (core dumped) 622s Standard error: 622s Segmentation fault (core dumped) 622s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 622s 139 622s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 622s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_geometry.py" [FAIL] 6.1s 622s Time: 6.11 622s Return code: 139 622s OKs: 0 625s Standard error: 625s Segmentation fault (core dumped) 625s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 625s 139 625s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 625s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_lex_parse_build.py" [FAIL] 6.3s 625s Time: 6.34 625s Return code: 139 625s OKs: 0 628s Standard error: 628s Segmentation fault (core dumped) 628s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 628s 139 628s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 628s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_model.py" [FAIL] 6.6s 628s Time: 6.60 628s Return code: 139 628s OKs: 0 631s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 631s 1 631s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 631s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py" [FAIL] 2.2s 631s Time: 2.17 631s Return code: 1 631s OKs: 0 631s Standard out: 631s Skipping tst_validation.exercise_smart_load() because of URLError. 631s Standard error: 631s Traceback (most recent call last): 631s File "/usr/lib/python3.13/urllib/request.py", line 1541, in ftp_open 631s fw = self.connect_ftp(user, passwd, host, port, dirs, req.timeout) 631s File "/usr/lib/python3.13/urllib/request.py", line 1561, in connect_ftp 631s return ftpwrapper(user, passwd, host, port, dirs, timeout, 631s persistent=False) 631s File "/usr/lib/python3.13/urllib/request.py", line 2409, in __init__ 631s self.init() 631s ~~~~~~~~~^^ 631s File "/usr/lib/python3.13/urllib/request.py", line 2418, in init 631s self.ftp.connect(self.host, self.port, self.timeout) 631s ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 631s File "/usr/lib/python3.13/ftplib.py", line 158, in connect 631s self.sock = socket.create_connection((self.host, self.port), self.timeout, 631s ~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 631s source_address=self.source_address) 631s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 631s File "/usr/lib/python3.13/socket.py", line 864, in create_connection 631s raise exceptions[0] 631s File "/usr/lib/python3.13/socket.py", line 849, in create_connection 631s sock.connect(sa) 631s ~~~~~~~~~~~~^^^^ 631s ConnectionRefusedError: [Errno 111] Connection refused 631s 631s The above exception was the direct cause of the following exception: 631s 631s Traceback (most recent call last): 631s File "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py", line 327, in 631s exercise(sys.argv[1:]) 631s ~~~~~~~~^^^^^^^^^^^^^^ 631s File "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py", line 26, in exercise 631s exercise_validation() 631s ~~~~~~~~~~~~~~~~~~~^^ 631s File "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py", line 29, in exercise_validation 631s cd = validation.smart_load_dictionary(name="cif_core.dic") 631s File "/usr/lib/python3/dist-packages/iotbx/cif/validation.py", line 111, in smart_load_dictionary 631s url = locate_dictionary(name, registry_location=registry_location) 631s File "/usr/lib/python3/dist-packages/iotbx/cif/validation.py", line 129, in locate_dictionary 631s cm = cif.reader(file_object=urlopen(registry_location)).model() 631s ~~~~~~~^^^^^^^^^^^^^^^^^^^ 631s File "/usr/lib/python3.13/urllib/request.py", line 189, in urlopen 631s return opener.open(url, data, timeout) 631s ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^ 631s File "/usr/lib/python3.13/urllib/request.py", line 489, in open 631s response = self._open(req, data) 631s File "/usr/lib/python3.13/urllib/request.py", line 506, in _open 631s result = self._call_chain(self.handle_open, protocol, protocol + 631s '_open', req) 631s File "/usr/lib/python3.13/urllib/request.py", line 466, in _call_chain 631s result = func(*args) 631s File "/usr/lib/python3.13/urllib/request.py", line 1558, in ftp_open 631s raise URLError(exp) from exp 631s urllib.error.URLError: 631s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_parser.py" [OK] 0.3s 631s Time: 0.26 631s Return code: 0 631s OKs: 0 631s Standard out: 631s 1 0 0 631s 1 0 0 631s 1 0 0 631s 1 0 0 631s 1 0 0 631s 1 0 0 631s 1 0 0 631s 1 0 0 631s 1 0 0 631s 0 0 0 631s 0 0 0 631s 1 0 0 631s 0 0 0 631s 0 0 0 631s 1 0 0 631s 1 0 0 631s 1 0 0 631s 1 0 0 631s 1 0 0 631s 1 0 0 631s 1 0 0 631s 1 0 0 631s 1 0 0 631s 1 0 0 631s 1 0 0 631s 1 0 0 631s 0 0 0 631s 1 0 0 631s 1 0 0 631s 1 0 0 631s 1 0 0 631s 1 0 0 631s 0 0 0 631s 0 1 0 631s 0 1 0 631s 0 0 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 0 1 0 631s 1 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s 2 0 0 631s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_citations.py" [OK] 0.5s 631s Time: 0.52 631s Return code: 0 631s OKs: 1 631s Standard out: 631s OK 632s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_model_builder.py" [OK] 0.3s 632s Time: 0.27 632s Return code: 0 632s OKs: 0 632s Standard error: 632s Segmentation fault (core dumped) 632s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 632s 139 632s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 632s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_restraints.py" [FAIL] 6.5s 632s Time: 6.50 632s Return code: 139 632s OKs: 0 635s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 635s 139 635s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 635s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_hklf.py" [FAIL] 3.6s 635s Time: 3.61 635s Return code: 139 635s OKs: 0 635s Standard error: 635s Segmentation fault (core dumped) 638s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 638s 139 638s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 638s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_lex_parse_build.py" [FAIL] 6.9s 638s Time: 6.91 638s Return code: 139 638s OKs: 0 638s Standard error: 638s Segmentation fault (core dumped) 642s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 642s 139 642s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 642s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_writer.py" [FAIL] 6.2s 642s Time: 6.24 642s Return code: 139 642s OKs: 0 642s Standard error: 642s Segmentation fault (core dumped) 645s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 645s 139 645s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 645s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_fvar_encoding.py" [FAIL] 6.5s 645s Standard error: 645s Segmentation fault (core dumped) 645s Time: 6.50 645s Return code: 139 645s OKs: 0 645s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_mmcif.py" [OK] 0.3s 645s Time: 0.28 645s Return code: 0 645s OKs: 1 645s Standard out: 645s OK 648s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 648s 134 648s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 648s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_pdb.py" [FAIL] 6.8s 648s Standard error: 648s *** buffer overflow detected ***: terminated 648s Aborted (core dumped) 648s Time: 6.75 648s Return code: 134 648s OKs: 0 651s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_mmcif_hierarchy_2.py" [OK] 2.7s 651s Time: 2.67 651s Return code: 0 651s OKs: 1 651s Standard out: 651s OK 652s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_tls.py" [OK] 0.7s 652s Time: 0.70 652s Return code: 0 652s OKs: 1 652s Standard out: 652s Skipping exercise_mmcif_tls(): missing phenix_regression directory. 652s OK 652s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/hybrid_36.py" exercise [OK] 0.1s 652s Time: 0.12 652s Return code: 0 652s OKs: 1 652s Standard out: 652s OK 652s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 652s 134 652s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 652s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_mmcif_hierarchy.py" [FAIL] 7.0s 652s Time: 7.00 652s Return code: 134 652s OKs: 0 652s Standard error: 652s *** buffer overflow detected ***: terminated 652s Aborted (core dumped) 653s "/usr/lib/cctbx/python3.13/iotbx/pdb/hybrid_36_fem" [OK] 1.3s 653s Time: 1.26 653s Return code: 0 653s OKs: 0 653s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_hierarchy_atom_sort.py" [OK] 0.3s 653s Time: 0.33 653s Return code: 0 653s OKs: 1 653s Standard out: 653s OK 654s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric.py" [OK] 0.3s 654s Time: 0.26 654s Return code: 0 654s OKs: 0 654s Standard out: 654s chem_data is missing, skipping test 654s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_selected_hierarchy_flip.py" [OK] 0.3s 654s Time: 0.29 654s Return code: 0 654s OKs: 0 656s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 656s 139 656s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 656s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_hierarchy.py" [FAIL] 4.1s 656s Time: 4.13 656s Return code: 139 656s OKs: 0 656s Standard error: 656s Segmentation fault (core dumped) 660s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 660s 139 660s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 660s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_ext.py" [FAIL] 5.9s 660s Time: 5.91 660s Return code: 139 660s OKs: 0 660s Standard error: 660s Segmentation fault (core dumped) 660s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_rna_dna_atom_names.py" [OK] 0.3s 660s Time: 0.30 660s Return code: 0 660s OKs: 1 660s Standard out: 660s OK 660s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_name_interpretation.py" [OK] 0.3s 660s Time: 0.27 660s Return code: 0 660s OKs: 1 660s Standard out: 660s OK 661s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py" [OK] 0.3s 661s Time: 0.28 661s Return code: 0 661s OKs: 1 661s Standard out: 661s OK 661s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/modified_aa_names.py" [OK] 0.0s 661s Time: 0.03 661s Return code: 0 661s OKs: 0 661s Standard out: 661s 2141 661s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/modified_rna_dna_names.py" [OK] 0.0s 661s Time: 0.03 661s Return code: 0 661s OKs: 0 661s Standard out: 661s 792 661s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_sheet.py" [OK] 0.4s 661s Time: 0.36 661s Return code: 0 661s OKs: 1 661s Standard out: 661s OK 661s u+s,u,s: 0.31 0.29 0.02 663s Standard error: 663s Segmentation fault (core dumped) 663s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 663s 139 663s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 663s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_selection.py" [FAIL] 6.6s 663s Time: 6.62 663s Return code: 139 663s OKs: 0 663s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_annotation_long.py" [OK] 0.3s 663s Time: 0.28 663s Return code: 0 663s OKs: 1 663s Standard out: 663s OK time = 0.018 664s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/secondary_structure.py" [OK] 0.3s 664s Time: 0.28 664s Return code: 0 664s OKs: 0 667s Standard error: 667s Segmentation fault (core dumped) 667s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 667s 139 667s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 667s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_annotation.py" [FAIL] 5.5s 667s Time: 5.50 667s Return code: 139 667s OKs: 0 668s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_secondary_structure.py" [OK] 1.1s 668s Time: 1.09 668s Return code: 0 668s OKs: 5 668s Standard out: 668s OK 668s OK 668s OK 668s OK 668s OK 670s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 670s 139 670s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 670s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_selection_string.py" [FAIL] 6.4s 670s Time: 6.43 670s Return code: 139 670s OKs: 0 670s Standard error: 670s Segmentation fault (core dumped) 672s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_secondary_structure_2.py" [OK] 2.3s 672s Time: 2.28 672s Return code: 0 672s OKs: 2 672s Standard out: 672s OK 672s OK 673s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/remediation/tst_remediator.py" [OK] 0.7s 673s Time: 0.74 673s Return code: 0 673s OKs: 0 673s Standard out: 673s chem_data is not available for remediator tests, skipping 673s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 673s 139 673s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 673s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_utils.py" [FAIL] 5.5s 673s Time: 5.47 673s Return code: 139 673s OKs: 0 673s Standard error: 673s Segmentation fault (core dumped) 673s libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/pdb_to_map_simple.py" [OK] 0.3s 673s Time: 0.28 673s Return code: 0 673s OKs: 0 673s Standard out: 673s Usage: iotbx.python pdb_to_map_simple.py [options] pdb_file... 673s 673s Options: 673s -h, --help show this help message and exit 673s --d_min=FLOAT high-resolution limit for structure-factor calculation 674s libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/pdb_tardy_conf_sampling_simple.py" [OK] 0.3s 674s Time: 0.31 674s Return code: 0 674s OKs: 0 674s Standard out: 674s Time importing extensions: 0.25 674s skipping test: phenix_regression not available. 677s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 677s 134 677s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 677s libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/pdb_truncate_to_ala/tst.py" [FAIL] 3.6s 677s Time: 3.59 677s Return code: 134 677s OKs: 0 677s Standard error: 677s *** buffer overflow detected ***: terminated 677s Aborted (core dumped) 681s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 681s 139 681s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 681s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_examples.py" [FAIL] 7.2s 681s Time: 7.24 681s Return code: 139 681s OKs: 0 681s Standard error: 681s Segmentation fault (core dumped) 684s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 684s 139 684s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 684s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cns/space_group_symbols.py" [FAIL] 7.0s 684s Time: 6.99 684s Return code: 139 684s OKs: 0 684s Standard error: 684s Segmentation fault (core dumped) 687s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 687s 139 687s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 687s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cns/tst_cns.py" [FAIL] 5.9s 687s Time: 5.90 687s Return code: 139 687s OKs: 0 687s Standard error: 687s Segmentation fault (core dumped) 690s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 690s 139 690s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 690s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/tst_merge.py" P31 [FAIL] 6.2s 690s Time: 6.20 690s Return code: 139 690s OKs: 0 690s Standard error: 690s Segmentation fault (core dumped) 693s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 693s 139 693s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 693s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/no_merge_original_index.py" [FAIL] 6.3s 693s Time: 6.28 693s Return code: 139 693s OKs: 0 693s Standard error: 693s Segmentation fault (core dumped) 696s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 696s 139 696s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 696s libtbx.python "/usr/lib/python3/dist-packages/iotbx/ccp4_map/tst.py" [FAIL] 6.5s 696s Time: 6.47 696s Return code: 139 696s OKs: 0 696s Standard error: 696s Segmentation fault (core dumped) 700s Standard error: 700s Segmentation fault (core dumped) 700s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 700s 139 700s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 700s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_ext.py" [FAIL] 7.1s 700s Time: 7.07 700s Return code: 139 700s OKs: 0 703s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 703s 139 703s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 703s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_extract_from_symmetry_lib.py" [FAIL] 7.1s 703s Time: 7.07 703s Return code: 139 703s OKs: 0 703s Standard error: 703s /usr/lib/python3/dist-packages/ccp4io_adaptbx/__init__.py:25: UserWarning: ccp4io_adaptbx: cannot locate syminfo.lib 703s warnings.warn("ccp4io_adaptbx: cannot locate syminfo.lib") 703s Segmentation fault (core dumped) 704s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_miller_dict.py" [OK] 0.3s 704s Time: 0.26 704s Return code: 0 704s OKs: 0 704s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_unmerged.py" [OK] 0.3s 704s Time: 0.25 704s Return code: 0 704s OKs: 0 704s Standard out: 704s Title: . 704s Space group symbol from file: I23 704s Space group number from file: 197 704s Space group from matrices: I 2 3 (No. 197) 704s Point group symbol from file: PG23 704s Number of batches: 45 704s Number of crystals: 2 704s Number of Miller indices: 13 704s Resolution range: 39.0022 31.8451 704s History: 704s From MTZUTILS 21/11/2017 16:26:11 after history: 704s From MOSFLM run on 1/ 7/08 704s From MOSFLM run on 1/ 7/08 704s Crystal 1: 704s Name: HKL_base 704s Project: HKL_base 704s Id: 1 704s Unit cell: (78.0043, 78.0043, 78.0043, 90, 90, 90) 704s Number of datasets: 1 704s Dataset 1: 704s Name: HKL_base 704s Id: 0 704s Wavelength: 0 704s Number of columns: 18 704s label #valid %valid min max type 704s H 13 100.00% 0.00 1.00 H: index h,k,l 704s K 13 100.00% 2.00 2.00 H: index h,k,l 704s L 13 100.00% 0.00 1.00 H: index h,k,l 704s M_ISYM 13 100.00% 6.00 272.00 Y: M/ISYM, packed partial/reject flag and symmetry number 704s BATCH 13 100.00% 16.00 43.00 B: BATCH number 704s I 13 100.00% -19.71 7.39 J: intensity 704s SIGI 13 100.00% 0.41 3.05 Q: standard deviation 704s IPR 13 100.00% -10.84 4.99 J: intensity 704s SIGIPR 13 100.00% 0.41 3.05 Q: standard deviation 704s FRACTIONCALC 13 100.00% 0.07 1.15 R: real 704s XDET 13 100.00% 1099.43 1215.80 R: real 704s YDET 13 100.00% 1110.92 1201.06 R: real 704s ROT 13 100.00% 15.33 41.55 R: real 704s WIDTH 13 100.00% 0.37 2.19 R: real 704s LP 13 100.00% 0.00 0.03 R: real 704s MPART 13 100.00% 0.00 303.00 I: integer 704s FLAG 13 100.00% 0.00 40.00 I: integer 704s BGPKRATIOS 13 100.00% 8.04 10610.05 R: real 704s Crystal 2: 704s Name: DEFAULT 704s Project: AUTOMATIC 704s Id: 2 704s Unit cell: (78.0043, 78.0043, 78.0043, 90, 90, 90) 704s Number of datasets: 1 704s Dataset 1: 704s Name: NATIVE_SWEEP1 704s Id: 1 704s Wavelength: 0.979 704s Number of columns: 0 704s asu: (1, 2, 1) orig: (-1, 1, -2) M/ISYM: 15 704s asu: (1, 2, 1) orig: (1, -1, 2) M/ISYM: 272 704s asu: (1, 2, 1) orig: (1, -1, 2) M/ISYM: 272 704s asu: (1, 2, 1) orig: (-1, 2, 1) M/ISYM: 6 704s asu: (1, 2, 1) orig: (1, -2, -1) M/ISYM: 261 704s asu: (1, 2, 1) orig: (-1, 2, -1) M/ISYM: 263 704s asu: (1, 2, 1) orig: (1, -2, -1) M/ISYM: 261 704s asu: (1, 2, 1) orig: (-1, 2, -1) M/ISYM: 263 704s asu: (1, 2, 1) orig: (1, -2, 1) M/ISYM: 264 704s asu: (1, 2, 1) orig: (1, -2, 1) M/ISYM: 264 704s asu: (0, 2, 0) orig: (0, 0, -2) M/ISYM: 266 704s asu: (0, 2, 0) orig: (0, 0, -2) M/ISYM: 266 704s asu: (0, 2, 0) orig: (0, 0, -2) M/ISYM: 266 707s Standard error: 707s Segmentation fault (core dumped) 707s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 707s 139 707s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 707s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_dano.py" [FAIL] 6.5s 707s Time: 6.49 707s Return code: 139 707s OKs: 0 707s libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/tst_mtz_free_flipper.py" [OK] 0.3s 707s Time: 0.28 707s Return code: 0 707s OKs: 0 707s Standard out: 707s Skipping exercise(): input file not available 707s u+s,u,s: 0.24 0.20 0.04 710s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 710s 139 710s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 710s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst.py" P31 [FAIL] 5.8s 710s Time: 5.83 710s Return code: 139 710s OKs: 0 710s Standard error: 710s Segmentation fault (core dumped) 710s libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_adsc.py" [OK] 0.2s 710s Time: 0.22 710s Return code: 0 710s OKs: 1 710s Standard out: 710s Skipping exercise_adscread(): input file not available 710s OK 710s libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_detectors.py" [OK] 0.1s 710s Time: 0.08 710s Return code: 0 710s OKs: 0 710s Standard out: 710s bpcx_regression not configured, skipping test 713s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 713s 139 713s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 713s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_utils.py" [FAIL] 6.4s 713s Time: 6.42 713s Return code: 139 713s OKs: 0 713s Standard error: 713s Segmentation fault (core dumped) 717s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 717s 139 717s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 717s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xplor/tst_xplormap.py" [FAIL] 6.5s 717s Time: 6.46 717s Return code: 139 717s OKs: 0 717s Standard error: 717s Segmentation fault (core dumped) 717s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdbx_mmcif_tutorial.py" [OK] 0.1s 717s Time: 0.07 717s Return code: 0 717s OKs: 1 717s Standard out: 717s phenix_regression not configured, skipping tst_pdbx_mmcif_tutorial.py 717s OK 720s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 720s 139 720s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 720s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_phases.py" P31 [FAIL] 6.4s 720s Time: 6.39 720s Return code: 139 720s OKs: 0 720s Standard error: 720s Segmentation fault (core dumped) 725s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 725s 1 725s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 725s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py" [FAIL] 8.3s 725s Time: 8.26 725s Return code: 1 725s OKs: 0 725s Standard error: 725s Traceback (most recent call last): 725s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py", line 477, in 725s exercise(sys.argv[1:]) 725s ~~~~~~~~^^^^^^^^^^^^^^ 725s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py", line 22, in exercise 725s run_and_compare( 725s ~~~~~~~~~~~~~~~^ 725s ['iotbx.lattice_symmetry' 725s ^^^^^^^^^^^^^^^^^^^^^^^^^ 725s ...<31 lines>... 725s 725s 725s """) 725s ^^^^ 725s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py", line 17, in run_and_compare 725s command=command).raise_if_errors().stdout_lines 725s ~~~~~~~~~~~~~~~^^ 725s File "/usr/lib/python3/dist-packages/libtbx/easy_run.py", line 46, in raise_if_errors 725s raise Error(msg) 725s RuntimeError: child process stderr output: 725s command: 'iotbx.lattice_symmetry --unit_cell="12.7923,12.8923,29.4356,102.846,103.846,22.7475"' 725s Segmentation fault (core dumped) 725s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_data_plots.py" [OK] 0.1s 725s Time: 0.08 725s Return code: 0 725s OKs: 1 725s Standard out: 725s OK 725s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_csv_utils.py" [OK] 0.2s 725s Time: 0.16 725s Return code: 0 725s OKs: 1 725s Standard out: 725s OK 727s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 727s 139 727s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 727s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_statistics.py" Fdd2 P31m [FAIL] 7.0s 727s Time: 6.98 727s Return code: 139 727s OKs: 0 727s Standard error: 727s Segmentation fault (core dumped) 727s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_bioinformatics.py" [OK] 0.1s 727s Time: 0.13 727s Return code: 0 727s OKs: 3 727s Standard out: 727s Testing guess_chain_types ... OK 727s Testing merge_sequences ... OK 727s testEquality (__main__.test_sequence.testEquality) ... ok 727s testNonEquality (__main__.test_sequence.testNonEquality) ... ok 727s testFormat (__main__.test_fasta_sequence.testFormat) ... ok 727s testStr (__main__.test_fasta_sequence.testStr) ... ok 727s testFormat (__main__.test_pir_sequence.testFormat) ... ok 727s testStr (__main__.test_pir_sequence.testStr) ... ok 727s testConservationCode (__main__.test_midline.testConservationCode) ... ok 727s testMidline (__main__.test_midline.testMidline) ... ok 727s test__str__ (__main__.test_alignment.test__str__) ... ok 727s test_copy (__main__.test_alignment.test_copy) ... ok 727s test_error (__main__.test_alignment.test_error) ... ok 727s test_extend (__main__.test_alignment.test_extend) ... ok 727s test_identity_count (__main__.test_alignment.test_identity_count) ... ok 727s test_identity_fraction (__main__.test_alignment.test_identity_fraction) ... ok 727s test_length (__main__.test_alignment.test_length) ... ok 727s test_multiplicity (__main__.test_alignment.test_multiplicity) ... ok 727s test__str__ (__main__.test_fasta_alignment.test__str__) ... ok 727s test_copy (__main__.test_fasta_alignment.test_copy) ... ok 727s test_error (__main__.test_fasta_alignment.test_error) ... ok 727s test_format (__main__.test_fasta_alignment.test_format) ... ok 727s test__str__ (__main__.test_pir_alignment.test__str__) ... ok 727s test_copy (__main__.test_pir_alignment.test_copy) ... ok 727s test_error (__main__.test_pir_alignment.test_error) ... ok 727s test_format (__main__.test_pir_alignment.test_format) ... ok 727s test__str__ (__main__.test_clustal_alignment.test__str__) ... ok 727s test_copy (__main__.test_clustal_alignment.test_copy) ... ok 727s test_format (__main__.test_clustal_alignment.test_format) ... ok 727s testFasta (__main__.test_sequence_parse.testFasta) ... ok 727s testPir (__main__.test_sequence_parse.testPir) ... ok 727s testSequence (__main__.test_sequence_parse.testSequence) ... ok 727s testTolerantPir (__main__.test_sequence_parse.testTolerantPir) ... ok 727s test_dbfetch_parse (__main__.test_sequence_parse.test_dbfetch_parse) ... ok 727s test_filename_selection (__main__.test_sequence_parse.test_filename_selection) ... ok 727s test_known_formats (__main__.test_sequence_parse.test_known_formats) ... ok 727s test_ls_parse (__main__.test_sequence_parse.test_ls_parse) ... ok 727s test_tf_parse (__main__.test_sequence_parse.test_tf_parse) ... ok 727s testAli (__main__.test_alignment_parse.testAli) ... ok 727s testClustal (__main__.test_alignment_parse.testClustal) ... ok 727s testFasta (__main__.test_alignment_parse.testFasta) ... ok 727s testPir (__main__.test_alignment_parse.testPir) ... ok 727s test_filename_selection (__main__.test_alignment_parse.test_filename_selection) ... ok 727s test_known_formats (__main__.test_alignment_parse.test_known_formats) ... ok 727s test_process_header (__main__.test_hhsearch_parser.test_process_header) ... ok 727s test_process_hits (__main__.test_hhsearch_parser.test_process_hits) ... ok 727s test_process_header (__main__.test_hhalign_parser.test_process_header) ... ok 727s test_process_hits (__main__.test_hhalign_parser.test_process_hits) ... ok 727s 727s ---------------------------------------------------------------------- 727s Ran 46 tests in 0.008s 727s 727s OK 730s Standard error: 730s Segmentation fault (core dumped) 730s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 730s 139 730s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 730s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_file_reader.py" [FAIL] 4.7s 730s Time: 4.73 730s Return code: 139 730s OKs: 0 736s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 736s 1 736s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 736s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py" [FAIL] 8.9s 736s Time: 8.91 736s Return code: 1 736s OKs: 0 736s Standard out: 736s Starting iotbx.pdb.box_around_molecule 736s on Sat Mar 22 14:57:42 2025 by ubuntu 736s =============================================================================== 736s 736s Standard error: 736s *** buffer overflow detected ***: terminated 736s Aborted (core dumped) 736s Traceback (most recent call last): 736s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py", line 138, in 736s exercise() 736s ~~~~~~~~^^ 736s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py", line 48, in exercise 736s assert not easy_run.call("iotbx.pdb.box_around_molecule %s.pdb" % ( 736s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 736s prefix)) 736s ^^^^^^^^ 736s AssertionError 736s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_input.py" [OK] 0.3s 736s Time: 0.25 736s Return code: 0 736s OKs: 0 737s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 737s 134 737s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 737s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_segids.py" [FAIL] 7.2s 737s Time: 7.18 737s Return code: 134 737s OKs: 0 737s Standard error: 737s *** buffer overflow detected ***: terminated 737s Aborted (core dumped) 738s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_multimodel.py" [OK] 0.7s 738s Time: 0.73 738s Return code: 0 738s OKs: 0 738s Standard out: 738s ['_MutableMapping__marker', '__abstractmethods__', '__class__', '__class_getitem__', '__contains__', '__copy__', '__deepcopy__', '__delattr__', '__delitem__', '__dict__', '__dir__', '__doc__', '__eq__', '__firstlineno__', '__format__', '__ge__', '__getattribute__', '__getitem__', '__getstate__', '__gt__', '__hash__', '__init__', '__init_subclass__', '__iter__', '__le__', '__len__', '__lt__', '__module__', '__ne__', '__new__', '__reduce__', '__reduce_ex__', '__repr__', '__reversed__', '__setattr__', '__setitem__', '__sizeof__', '__slots__', '__static_attributes__', '__str__', '__subclasshook__', '__weakref__', '_abc_impl', '_items', '_set', 'add_data_item', 'add_loop', 'clear', 'copy', 'deepcopy', 'difference', 'get', 'get_loop', 'get_loop_or_row', 'get_loop_with_defaults', 'get_looped_item', 'get_single_item', 'item_keys', 'items', 'iterloops', 'keys', 'keys_lower', 'loop_keys', 'loops', 'pop', 'popitem', 'saves', 'setdefault', 'show', 'sort', 'update', 'validate', 'values'] 738s ['_atom_site.group_PDB', '_atom_site.id', '_atom_site.label_atom_id', '_atom_site.label_alt_id', '_atom_site.label_comp_id', '_atom_site.auth_asym_id', '_atom_site.auth_seq_id', '_atom_site.pdbx_PDB_ins_code', '_atom_site.Cartn_x', '_atom_site.Cartn_y', '_atom_site.Cartn_z', '_atom_site.occupancy', '_atom_site.B_iso_or_equiv', '_atom_site.type_symbol', '_atom_site.pdbx_formal_charge', '_atom_site.label_asym_id', '_atom_site.label_entity_id', '_atom_site.label_seq_id', '_atom_site.pdbx_PDB_model_num', '_chem_comp.id', '_struct_asym.id'] 738s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_add_conformations.py" [OK] 0.3s 738s Time: 0.25 738s Return code: 0 738s OKs: 0 738s Standard out: 738s phenix_regression not available, skipping test. 740s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 740s 134 740s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 740s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py" [FAIL] 4.1s 740s Time: 4.07 740s Return code: 134 740s OKs: 0 740s Standard error: 740s *** buffer overflow detected ***: terminated 740s Aborted (core dumped) 740s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reindex.py" [OK] 0.1s 740s Time: 0.09 740s Return code: 0 740s OKs: 1 740s Standard out: 740s Skipping 740s OK 743s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 743s 139 743s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 743s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_symmetry.py" [FAIL] 4.7s 743s Time: 4.73 743s Return code: 139 743s OKs: 0 743s Standard error: 743s Segmentation fault (core dumped) 746s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 746s 139 746s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 746s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_editor.py" [FAIL] 5.7s 746s Time: 5.66 746s Return code: 139 746s OKs: 0 746s Standard error: 746s Segmentation fault (core dumped) 746s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_as_fasta.py" [OK] 0.3s 746s Time: 0.32 746s Return code: 0 746s OKs: 1 746s Standard out: 746s OK 747s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_link_records.py" [OK] 0.4s 747s Time: 0.40 747s Return code: 0 747s OKs: 0 747s Standard out: 747s Can not initialize monomer_library, skipping test. 747s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_merging_statistics.py" [OK] 0.2s 747s Time: 0.22 747s Return code: 0 747s OKs: 1 747s Standard out: 747s phenix_regression not configured, skipping. 747s OK 751s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 751s 1 751s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 751s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_models.py" [FAIL] 8.2s 751s Time: 8.22 751s Return code: 1 751s OKs: 0 751s Standard error: 751s Traceback (most recent call last): 751s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_models.py", line 60, in 751s exercise() 751s ~~~~~~~~^^ 751s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_models.py", line 48, in exercise 751s assert (len(out.stdout_lines) == 2) and (len(out.stderr_lines) == 0) 751s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 751s AssertionError 752s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 752s 139 752s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 752s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_simple_map_coefficients.py" [FAIL] 5.5s 752s Time: 5.46 752s Return code: 139 752s OKs: 0 752s Standard error: 752s Segmentation fault (core dumped) 752s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_xparm.py" [OK] 0.1s 752s Time: 0.09 752s Return code: 0 752s OKs: 3 752s Standard out: 752s OK 752s OK 752s OK 752s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_xds_inp.py" [OK] 0.1s 752s Time: 0.09 752s Return code: 0 752s OKs: 1 752s Standard out: 752s OK 758s Standard error: 758s Segmentation fault (core dumped) 758s Traceback (most recent call last): 758s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_sort_atoms.py", line 815, in 758s exercise_1() 758s ~~~~~~~~~~^^ 758s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_sort_atoms.py", line 806, in exercise_1 758s assert not easy_run.call(cmd) 758s ^^^^^^^^^^^^^^^^^^^^^^ 758s AssertionError 758s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 758s 1 758s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 758s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_sort_atoms.py" [FAIL] 7.0s 758s Time: 6.98 758s Return code: 1 758s OKs: 0 758s Standard out: 758s iotbx.pdb.sort_atoms tst_sort_atoms_1.pdb 758s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_spots_xds.py" [OK] 0.1s 758s Time: 0.08 758s Return code: 0 758s OKs: 1 758s Standard out: 758s OK 758s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_as_cif.py" [OK] 0.5s 758s Time: 0.46 758s Return code: 0 758s OKs: 1 758s Standard out: 758s Can not initialize monomer_library, skipping tst_pdb_as_cif. 758s OK 760s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 760s 139 760s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 760s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_integrate_hkl.py" [FAIL] 7.2s 760s Time: 7.19 760s Return code: 139 760s OKs: 0 760s Standard error: 760s Segmentation fault (core dumped) 762s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 762s 139 762s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 762s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py" [FAIL] 4.0s 762s Time: 3.99 762s Return code: 139 762s OKs: 0 762s Standard error: 762s Segmentation fault (core dumped) 766s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 766s 139 766s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 766s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py" [FAIL] 6.3s 766s Time: 6.29 766s Return code: 139 766s OKs: 0 766s Standard error: 766s Segmentation fault (core dumped) 766s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py" [OK] 0.3s 766s Time: 0.27 766s Return code: 0 766s OKs: 0 766s Standard out: 766s Skipping tests: phenix not found 767s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py" [OK] 0.8s 767s Time: 0.75 767s Return code: 0 767s OKs: 0 767s Standard out: 767s chem_data is not available, skipping 769s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 769s 139 769s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 769s libtbx.python "/usr/lib/python3/dist-packages/iotbx/dsn6/tst.py" P31 [FAIL] 6.3s 769s Time: 6.34 769s Return code: 139 769s OKs: 0 769s Standard error: 769s Segmentation fault (core dumped) 772s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 772s 139 772s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 772s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py" [FAIL] 5.2s 772s Time: 5.19 772s Return code: 139 772s OKs: 0 772s Standard error: 772s Segmentation fault (core dumped) 775s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 775s 139 775s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 775s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py" [FAIL] 6.6s 775s Time: 6.56 775s Return code: 139 775s OKs: 0 775s Standard error: 775s Segmentation fault (core dumped) 779s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 779s 139 779s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 779s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py" [FAIL] 6.6s 779s Time: 6.58 779s Return code: 139 779s OKs: 0 779s Standard error: 779s Segmentation fault (core dumped) 783s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 783s 139 783s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 783s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py" [FAIL] 7.5s 783s Time: 7.51 783s Return code: 139 783s OKs: 0 783s Standard error: 783s Segmentation fault (core dumped) 786s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 786s 139 786s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 786s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_input.py" [FAIL] 7.4s 786s Time: 7.42 786s Return code: 139 786s OKs: 0 786s Standard error: 786s Segmentation fault (core dumped) 789s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 789s 139 789s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 789s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py" [FAIL] 6.4s 789s Standard error: 789s Segmentation fault (core dumped) 789s Time: 6.42 789s Return code: 139 789s OKs: 0 793s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 793s 139 793s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 793s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs.py" [FAIL] 7.2s 793s Time: 7.19 793s Return code: 139 793s OKs: 0 793s Standard error: 793s Segmentation fault (core dumped) 796s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 796s 139 796s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 796s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py" [FAIL] 7.1s 796s Time: 7.14 796s Return code: 139 796s OKs: 0 796s Standard error: 796s Segmentation fault (core dumped) 800s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 800s 139 800s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 800s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_read_mtrix_records_from_cif.py" [FAIL] 7.2s 800s Time: 7.17 800s Return code: 139 800s OKs: 0 800s Standard error: 800s Segmentation fault (core dumped) 804s Standard error: 804s Segmentation fault (core dumped) 804s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 804s 139 804s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 804s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_show_systematic_absences.py" [FAIL] 7.2s 804s Time: 7.23 804s Return code: 139 804s OKs: 0 804s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_reader.py" [OK] 0.4s 804s Time: 0.39 804s Return code: 0 804s OKs: 1 804s Standard out: 804s OK 807s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 807s 139 807s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 807s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_miller_sort_asu.py" [FAIL] 6.4s 807s Time: 6.37 807s Return code: 139 807s OKs: 0 807s Standard error: 807s Segmentation fault (core dumped) 807s libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/tst_alignment_as_hsearch.py" [OK] 0.1s 807s Time: 0.10 807s Return code: 0 807s OKs: 0 807s libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/tst_ebi_wu_blast_xml.py" [OK] 0.1s 807s Time: 0.13 807s Return code: 0 807s OKs: 0 807s libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/tst_ncbi_blast_xml.py" [OK] 0.1s 807s Time: 0.14 807s Return code: 0 807s OKs: 0 808s libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/pdb_info.py" [OK] 0.8s 808s Time: 0.85 808s Return code: 0 808s OKs: 0 811s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 811s 134 811s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 811s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_xray_scale.py" [FAIL] 6.8s 811s Time: 6.76 811s Return code: 134 811s OKs: 0 811s Standard error: 811s *** buffer overflow detected ***: terminated 811s Aborted (core dumped) 815s Standard error: 815s Segmentation fault (core dumped) 815s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 815s 139 815s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 815s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cif_as_pdb_1atom.py" [FAIL] 7.0s 815s Time: 7.00 815s Return code: 139 815s OKs: 0 819s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 819s 139 819s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 819s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cif_1.py" [FAIL] 8.1s 819s Time: 8.10 819s Return code: 139 819s OKs: 0 819s Standard error: 819s Segmentation fault (core dumped) 825s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 825s 1 825s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 825s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_data_cif.py" [FAIL] 10.2s 825s Time: 10.24 825s Return code: 1 825s OKs: 0 825s Standard error: 825s Traceback (most recent call last): 825s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_data_cif.py", line 395, in 825s tst_1() 825s ~~~~~^^ 825s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_data_cif.py", line 370, in tst_1 825s assert os.path.isfile('%s.cif_%s_000.mtz' % (prefix, bn)) 825s ~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 825s AssertionError 828s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 828s 134 828s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 828s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_all_chain_ids.py" [FAIL] 8.7s 828s Time: 8.73 828s Return code: 134 828s OKs: 0 828s Standard error: 828s *** buffer overflow detected ***: terminated 828s Aborted (core dumped) 831s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 831s 139 831s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 831s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_extract_xtal_data.py" [FAIL] 6.0s 831s Time: 5.95 831s Return code: 139 831s OKs: 0 831s Standard error: 831s Segmentation fault (core dumped) 832s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mtz_as_cif.py" [OK] 0.4s 832s Time: 0.41 832s Return code: 0 832s OKs: 1 832s Standard out: 832s Skipping 1akg.mtz test: input file not available 832s Skipping 1zff.mtz test: input file not available 832s Skipping l.mtz test: input file not available 832s Skipping outside_4_exptl_fobs_phases_freeR_flags.mtz test: input file not available 832s Skipping r1wqzsf.mtz test: input file not available 832s Skipping ur0013.sf.mtz test: input file not available 832s Skipping 1aba_test.mtz test: input file not available 832s OK 832s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_group_rounding.py" [OK] 0.3s 832s Time: 0.28 832s Return code: 0 832s OKs: 0 836s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 836s 139 836s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 836s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cli_parser.py" [FAIL] 7.9s 836s Time: 7.88 836s Return code: 139 836s OKs: 0 836s Standard error: 836s Segmentation fault (core dumped) 836s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py" [OK] 0.3s 836s Time: 0.30 836s Return code: 0 836s OKs: 1 836s Standard out: 836s [('1', 22), ('3', 17), ('1', 1), ('3', 1)] 836s [('1', 22), ('3', 18), ('1', 1)] 836s OK 837s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_chain_ids_1.py" [OK] 1.4s 837s Time: 1.36 837s Return code: 0 837s OKs: 1 837s Standard out: 837s 837s total number of: 837s models: 1 837s chains: 3 837s alt. conf.: 0 837s residues: 12 837s atoms: 174 837s anisou: 0 837s number of atom element+charge types: 4 837s histogram of atom element+charge frequency: 837s " H " 78 837s " C " 60 837s " O " 21 837s " N " 15 837s residue name classes: 837s "common_amino_acid" 12 837s number of chain ids: 3 837s histogram of chain id frequency: 837s "A" 1 837s "A-2" 1 837s "A-5" 1 837s number of alt. conf. ids: 0 837s number of residue names: 4 837s histogram of residue name frequency: 837s "ASN" 3 837s "PHE" 3 837s "SER" 3 837s "THR" 3 837s Can not initialize monomer_library, skipping test. 837s OK. Time: 0.603 838s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_1.py" [OK] 0.9s 838s Time: 0.89 838s Return code: 0 838s OKs: 1 838s Standard out: 838s OK. Time: 0.580 839s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 839s 134 839s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 839s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_occupancies_rounding.py" [FAIL] 6.9s 839s Time: 6.91 839s Return code: 134 839s OKs: 0 839s Standard error: 839s *** buffer overflow detected ***: terminated 839s Aborted (core dumped) 839s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_2.py" [OK] 0.8s 839s Time: 0.78 839s Return code: 0 839s OKs: 1 839s Standard out: 839s Can not initialize monomer_library, skipping test. 839s OK. Time: 0.020 840s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_3.py" [OK] 0.7s 840s Time: 0.75 840s Return code: 0 840s OKs: 1 840s Standard out: 840s Can not initialize monomer_library, skipping test. 840s OK. Time: 0.018 840s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_4.py" [OK] 0.7s 840s Time: 0.75 840s Return code: 0 840s OKs: 1 840s Standard out: 840s Can not initialize monomer_library, skipping test. 840s OK. Time: 0.018 840s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_copy_select.py" [OK] 0.3s 840s Time: 0.30 840s Return code: 0 840s OKs: 1 840s Standard out: 840s There is no info: pdb=" N " 840s And no parent: None 840s Info is gone: pdb=" N " 840s Info is still here: pdb=" N GLY A 1 " 840s OK. Time: 0.033 840s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_id_str.py" [OK] 0.3s 840s Time: 0.28 840s Return code: 0 840s OKs: 0 840s Standard out: 840s u+s,u,s: 0.23 0.22 0.01 840s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_altlocs.py" [OK] 0.3s 840s Time: 0.27 840s Return code: 0 840s OKs: 1 840s Standard out: 840s OK 843s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 843s 139 843s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 843s libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_debug_write.py" [FAIL] 3.1s 843s Time: 3.12 843s Return code: 139 843s OKs: 0 843s Standard error: 843s Segmentation fault (core dumped) 847s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 847s 139 847s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 847s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_reordered_chains.py" [EXPECTED FAIL] 3.6s 847s Time: 3.63 847s Return code: 139 847s OKs: 0 847s Standard error: 847s Segmentation fault (core dumped) 852s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 852s 134 852s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 852s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_to_from_hierarchy.py" [EXPECTED FAIL] 4.7s 852s Time: 4.72 852s Return code: 134 852s OKs: 0 852s Standard error: 852s *** buffer overflow detected ***: terminated 852s Aborted (core dumped) 852s libtbx.python "/usr/lib/python3/dist-packages/libtbx/metric_prefixes.py" [OK] 0.0s 852s Time: 0.02 852s Return code: 0 852s OKs: 1 852s Standard out: 852s OK 856s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_utils.py" [OK] 4.3s 856s Time: 4.29 856s Return code: 0 856s OKs: 0 856s Standard out: 856s Skipping exercise_retrieve_unless_exists 856s ### USER = ubuntu 856s ### PID = 11003 856s multiprocessing problem: None 856s base36_timestamp(): 00m8kc546v now 856s base36_timestamp(): zzydazd000 year 115855 CE 856s get_svn_revision(): None 856s get_build_tag(): None 856s u+s,u,s: 0.10 0.09 0.01 857s libtbx.python "/usr/lib/python3/dist-packages/libtbx/test_utils/__init__.py" [OK] 0.8s 857s Time: 0.78 857s Return code: 0 857s OKs: 1 857s Standard out: 857s OK 857s libtbx.python "/usr/lib/python3/dist-packages/libtbx/queuing_system_utils/pbs_utils.py" [OK] 0.0s 857s Time: 0.02 857s Return code: 0 857s OKs: 1 857s Standard out: 857s *** MY_PBS_ARRAY_SIZE = None 857s *** MY_PBS_ARRAYID_OFFSET = None 857s *** PBS_ARRAYID = None 857s *** OMPI_MCA_ns_nds_num_procs = None 857s *** OMPI_MCA_ns_nds_vpid = None 857s n,i: 1 0 857s OK 857s libtbx.python "/usr/lib/python3/dist-packages/libtbx/queuing_system_utils/sge_utils.py" [OK] 0.0s 857s Time: 0.03 857s Return code: 0 857s OKs: 1 857s Standard out: 857s *** JOB_ID = None 857s *** SGE_ARCH = None 857s *** SGE_TASK_FIRST = None 857s *** SGE_TASK_LAST = None 857s *** SGE_TASK_ID = None 857s OK 857s libtbx.python "/usr/lib/python3/dist-packages/libtbx/introspection.py" [OK] 0.0s 857s Time: 0.05 857s Return code: 0 857s OKs: 1 857s Standard out: 857s number of processors: 2 857s Virtual memory size: 25,296,896 857s Resident set size: 12,582,912 857s Stack size: 196,608 857s Virtual memory size: 25,296,896 exact max: 33,357,824 857s Resident set size: 15,728,640 approx. max: 21,692,416 857s Stack size: 196,608 approx. max: 196,608 857s Memory total: 4,208,918,528 857s Memory free: 106,364,928 857s OK 879s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_thread_utils.py" [OK] 22.3s 879s Time: 22.35 879s Return code: 0 879s OKs: 1 879s Standard out: 879s OK 881s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp.py" [OK] 2.3s 881s Time: 2.30 881s Return code: 0 881s OKs: 1 881s Standard out: 881s multiprocessing pool size: 2 881s wall clock time: 0.01 seconds 881s OK 882s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp_state.py" [OK] 0.9s 882s Time: 0.87 882s Return code: 0 882s OKs: 3 882s Standard out: 882s Running threading test with 1 processes, 1 threads, 3 tasks 882s (0x77b950fb2ba0-12221) object in state -init- 882s (0x77b950fb2ba0-12221) changing state from -init- to E6OC9I 882s (0x77b950fb2ba0-12221) changing state from E6OC9I to 676O1M 882s (0x77b950fb2ba0-12221) changing state from 676O1M to PVDNGG 882s (0x77b950fb2ba0-12221) object in state PVDNGG 882s OK 882s Running threading test with 2 processes, 1 threads, 3 tasks 882s (0x77b950e82210-12221) object in state -init- 882s (0x77b950e82210-12221) changing state from -init- to E5VI64 882s (0x77b950e82210-12221) changing state from E5VI64 to NWE12K 882s (0x77b950e82210-12221) changing state from NWE12K to OBFQM9 882s (0x77b950e82210-12221) object in state OBFQM9 882s OK 882s Running multiprocessing test with 1 processes, 1 threads, 3 tasks 882s (0x77b950e82210-12221) object in state -init- 882s (0x77b950e82210-12221) changing state from -init- to IUSFZ4 882s (0x77b950e82210-12221) changing state from IUSFZ4 to VUKJDF 882s (0x77b950e82210-12221) changing state from VUKJDF to YDOVI5 882s (0x77b950e82210-12221) object in state YDOVI5 882s OK 882s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_pickle.py" [OK] 0.1s 882s Time: 0.06 882s Return code: 0 882s OKs: 1 882s Standard out: 882s test.dat 882s dump: 0.00 s 882s load buffered: 0.00 s 882s load direct: 0.00 s 882s test.dat.gz 882s dump: 0.00 s 882s load buffered: 0.00 s 882s load direct: 0.00 s 882s dumps/loads 882s dump: 0.00 s 882s load buffered: 0.00 s 882s OK 882s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_fully_buffered_timeout.py" [OK] 0.1s 882s Time: 0.08 882s Return code: 0 882s OKs: 0 882s Standard out: 882s Skipping test: probe not configured 890s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_scheduling.py" [OK] 7.1s 890s Time: 7.07 890s Return code: 0 890s OKs: 0 891s libtbx.python "/usr/lib/python3/dist-packages/libtbx/easy_run.py" [OK] 1.5s 891s Time: 1.51 891s Return code: 0 891s OKs: 1 891s Standard out: 891s OK 891s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_containers.py" [OK] 0.0s 891s Time: 0.03 891s Return code: 0 891s OKs: 1 891s Standard out: 891s OK 891s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_path.py" [OK] 0.1s 891s Time: 0.05 891s Return code: 0 891s OKs: 1 891s Standard out: 891s OK 891s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_math_utils.py" [OK] 0.3s 891s Time: 0.34 891s Return code: 0 891s OKs: 1 891s Standard out: 891s OK 892s libtbx.python "/usr/lib/python3/dist-packages/libtbx/assert_utils.py" [OK] 0.1s 892s Time: 0.13 892s Return code: 0 892s OKs: 1 892s Standard out: 892s OK 892s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_str_utils.py" [OK] 0.4s 892s Time: 0.36 892s Return code: 0 892s OKs: 1 892s Standard out: 892s OK 892s libtbx.python "/usr/lib/python3/dist-packages/libtbx/table_utils.py" [OK] 0.0s 892s Time: 0.04 892s Return code: 0 892s OKs: 1 892s Standard out: 892s OK 893s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_fetch.py" [OK] 52.7s 893s Time: 52.74 893s Return code: 0 893s OKs: 1 893s Standard out: 893s data_r1yjpsf 893s # 893s loop_ 893s _audit.revision_id 893s _audit.creation_date 893s _audit.update_record 893s 1_0 2005-06-14 'Initial release' 893s 1_1 2013-05-08 'Status correction and format standardization' 893s # 893s _cell.entry_id 1yjp 893s _cell.length_a 21.937 893s _cell.length_b 4.866 893s _cell.length_c 23.477 893s _cell.angle_alpha 90.000 893s _cell.angle_beta 107.080 893s _cell.angle_gamma 90.000 893s # 893s _diffrn_radiation_wavelength.id 1 893s _diffrn_radiation_wavelength.wavelength 0.97500 893s # 893s _entry.id 1yjp 893s # 893s _exptl_crystal.id 1 893s # 893s _reflns_scale.group_code 1 893s # 893s _symmetry.entry_id 1yjp 893s _symmetry.space_group_name_H-M 'P 1 21 1' 893s # 893s # 893s loop_ 893s _refln.crystal_id 893s _refln.wavelength_id 893s _refln.scale_group_code 893s _refln.index_h 893s _refln.index_k 893s _refln.index_l 893s _refln.status 893s _refln.F_meas_au 893s _refln.F_meas_sigma_au 893s 1 1 1 -12 0 2 o 3.49 2.34 893s 1 1 1 -12 0 3 o 3.31 2.43 893s 1 1 1 -12 0 4 o 7.32 4.25 893s 1 1 1 -12 0 5 o 8.88 5.39 893s 1 1 1 -11 0 1 o 9.46 4.13 893s 1 1 1 -11 0 2 o 4.91 3.21 893s 1 1 1 -11 0 3 o 6.37 3.70 893s 1 1 1 -11 0 4 o 8.50 4.91 893s 1 1 1 -11 0 5 o 17.44 8.06 893s 1 1 1 -11 0 6 o 5.89 3.64 893s 1 1 1 -11 0 8 o 6.39 3.90 893s 1 1 1 -11 1 2 o 5.69 2.18 893s 1 1 1 -11 1 3 o 6.53 2.53 893s 1 1 1 -11 1 5 o 7.26 3.20 893s 1 1 1 -11 1 6 o 11.05 3.47 893s 1 1 1 -10 0 2 o 6.32 3.74 893s 1 1 1 -10 0 3 o 9.36 4.67 893s 1 1 1 -10 0 5 o 7.20 4.12 893s 1 1 1 -10 0 6 o 4.88 3.25 893s 1 1 1 -10 0 7 o 11.84 5.41 893s 1 1 1 -10 0 8 o 14.49 6.53 893s 1 1 1 -10 0 9 o 6.21 3.91 893s 1 1 1 -10 0 10 o 5.55 3.37 893s 1 1 1 -10 1 1 o 4.58 1.49 893s 1 1 1 -10 1 3 o 12.40 3.65 893s 1 1 1 -10 1 4 o 9.07 2.47 893s 1 1 1 -10 1 5 o 17.23 6.02 893s 1 1 1 -10 1 6 o 4.60 2.10 893s 1 1 1 -10 1 7 o 6.34 2.43 893s 1 1 1 -10 1 8 o 9.04 2.92 893s 1 1 1 -9 0 2 o 8.10 3.98 893s 1 1 1 -9 0 3 o 14.22 5.11 893s 1 1 1 -9 0 5 o 6.01 3.78 893s 1 1 1 -9 0 6 o 10.48 4.68 893s 1 1 1 -9 0 7 o 8.79 4.52 893s 1 1 1 -9 0 8 o 6.15 3.63 893s 1 1 1 -9 0 9 o 10.27 4.16 893s 1 1 1 -9 0 10 o 4.38 3.04 893s 1 1 1 -9 0 11 o 7.27 4.16 893s 1 1 1 -9 1 3 o 10.75 2.38 893s 1 1 1 -9 1 4 o 11.86 1.95 893s 1 1 1 -9 1 5 o 10.95 3.27 893s 1 1 1 -9 1 6 o 13.31 2.59 893s 1 1 1 -9 1 7 o 8.06 2.92 893s 1 1 1 -9 1 8 o 14.75 2.87 893s 1 1 1 -9 1 9 o 9.04 2.82 893s 1 1 1 -8 0 2 f 15.88 3.97 893s 1 1 1 -8 0 3 o 26.78 5.79 893s 1 1 1 -8 0 5 o 32.83 7.52 893s 1 1 1 -8 0 7 o 12.74 3.54 893s 1 1 1 -8 0 8 o 29.46 9.29 893s 1 1 1 -8 0 9 f 22.09 3.59 893s 1 1 1 -8 0 10 o 18.81 5.24 893s 1 1 1 -8 0 11 o 12.76 7.11 893s 1 1 1 -8 1 1 o 6.26 2.08 893s 1 1 1 -8 1 2 o 6.97 2.14 893s 1 1 1 -8 1 4 o 19.24 4.18 893s 1 1 1 -8 1 5 o 15.46 2.43 893s 1 1 1 -8 1 6 o 16.87 2.78 893s 1 1 1 -8 1 7 o 15.66 2.34 893s 1 1 1 -8 1 8 o 7.07 2.43 893s 1 1 1 -8 1 9 o 8.81 2.80 893s 1 1 1 -8 1 10 o 8.61 3.09 893s 1 1 1 -8 2 1 o 4.39 1.52 893s 1 1 1 -8 2 2 o 4.20 1.87 893s 1 1 1 -8 2 3 o 6.14 1.87 893s 1 1 1 -8 2 4 o 9.38 2.80 893s 1 1 1 -7 0 3 o 23.46 3.83 893s 1 1 1 -7 0 4 o 37.35 7.40 893s 1 1 1 -7 0 6 o 7.44 3.60 893s 1 1 1 -7 0 7 o 43.94 5.36 893s 1 1 1 -7 0 8 o 18.96 2.98 893s 1 1 1 -7 0 9 o 4.95 3.22 893s 1 1 1 -7 0 10 o 31.73 4.61 893s 1 1 1 -7 0 11 o 6.31 3.82 893s 1 1 1 -7 0 12 o 5.05 3.33 893s 1 1 1 -7 1 1 o 8.89 1.60 893s 1 1 1 -7 1 2 o 13.70 1.71 893s 1 1 1 -7 1 3 o 21.03 2.45 893s 1 1 1 -7 1 4 f 7.57 2.36 893s 1 1 1 -7 1 5 o 11.31 3.34 893s 1 1 1 -7 1 6 o 19.93 3.06 893s 1 1 1 -7 1 7 o 22.86 3.28 893s 1 1 1 -7 1 8 o 10.32 2.58 893s 1 1 1 -7 1 9 f 5.13 2.34 893s 1 1 1 -7 1 10 o 9.91 3.03 893s 1 1 1 -7 1 11 o 5.61 2.33 893s 1 1 1 -7 2 1 o 12.28 3.86 893s 1 1 1 -7 2 2 o 11.29 3.50 893s 1 1 1 -7 2 3 f 7.22 2.40 893s 1 1 1 -7 2 4 o 11.13 2.74 893s 1 1 1 -7 2 5 o 7.86 2.92 893s 1 1 1 -7 2 6 o 5.23 2.15 893s 1 1 1 -6 0 2 o 35.03 5.13 893s 1 1 1 -6 0 3 o 15.64 3.61 893s 1 1 1 -6 0 4 o 12.60 4.22 893s 1 1 1 -6 0 5 o 21.36 2.47 893s 1 1 1 -6 0 6 o 31.19 3.17 893s 1 1 1 -6 0 7 o 33.66 3.99 893s 1 1 1 -6 0 8 o 13.70 4.22 893s 1 1 1 -6 0 9 o 10.99 4.16 893s 1 1 1 -6 0 10 o 24.56 3.98 893s 1 1 1 -6 0 11 o 4.41 3.08 893s 1 1 1 -6 0 12 o 4.07 2.83 893s 1 1 1 -6 1 1 o 10.24 1.40 893s 1 1 1 -6 1 2 o 20.59 2.28 893s 1 1 1 -6 1 3 o 32.14 3.57 893s 1 1 1 -6 1 4 f 11.60 2.18 893s 1 1 1 -6 1 5 o 22.15 2.66 893s 1 1 1 -6 1 6 o 7.68 2.64 893s 1 1 1 -6 1 7 o 6.39 2.58 893s 1 1 1 -6 1 8 o 6.60 2.60 893s 1 1 1 -6 1 9 o 8.21 2.82 893s 1 1 1 -6 1 10 o 13.25 3.07 893s 1 1 1 -6 1 11 o 10.62 3.80 893s 1 1 1 -6 2 1 o 13.78 2.98 893s 1 1 1 -6 2 2 o 5.95 2.11 893s 1 1 1 -6 2 3 o 8.96 3.00 893s 1 1 1 -6 2 4 o 4.88 2.17 893s 1 1 1 -6 2 5 o 7.35 2.58 893s 1 1 1 -6 2 6 o 6.93 2.91 893s 1 1 1 -6 2 7 o 8.14 2.74 893s 1 1 1 -5 0 2 o 44.04 6.46 893s 1 1 1 -5 0 3 o 15.30 3.69 893s 1 1 1 -5 0 4 o 16.95 2.51 893s 1 1 1 -5 0 5 o 14.82 4.54 893s 1 1 1 -5 0 6 o 29.73 3.15 893s 1 1 1 -5 0 7 f 55.71 13.43 893s 1 1 1 -5 0 8 o 15.06 3.67 893s 1 1 1 -5 0 9 o 8.76 4.15 893s 1 1 1 -5 0 10 o 4.69 3.13 893s 1 1 1 -5 0 11 o 16.56 5.19 893s 1 1 1 -5 0 12 o 5.59 3.77 893s 1 1 1 -5 1 1 o 26.70 2.49 893s 1 1 1 -5 1 2 o 38.67 3.63 893s 1 1 1 -5 1 3 o 20.45 2.09 893s 1 1 1 -5 1 4 o 6.46 2.54 893s 1 1 1 -5 1 5 o 20.55 2.58 893s 1 1 1 -5 1 6 o 28.68 2.67 893s 1 1 1 -5 1 7 o 5.68 2.48 893s 1 1 1 -5 1 8 o 6.99 2.70 893s 1 1 1 -5 1 9 o 20.74 2.59 893s 1 1 1 -5 1 10 o 14.70 3.00 893s 1 1 1 -5 1 11 o 8.62 2.89 893s 1 1 1 -5 2 1 o 6.26 2.16 893s 1 1 1 -5 2 2 o 7.93 2.10 893s 1 1 1 -5 2 3 o 19.90 4.18 893s 1 1 1 -5 2 4 o 4.98 2.02 893s 1 1 1 -5 2 5 o 16.85 3.60 893s 1 1 1 -5 2 7 o 8.15 2.74 893s 1 1 1 -5 2 8 o 8.89 2.75 893s 1 1 1 -4 0 2 o 4.55 2.74 893s 1 1 1 -4 0 3 o 23.50 2.52 893s 1 1 1 -4 0 4 o 19.15 3.81 893s 1 1 1 -4 0 7 o 20.06 2.98 893s 1 1 1 -4 0 8 o 28.85 3.55 893s 1 1 1 -4 0 9 o 5.36 3.45 893s 1 1 1 -4 0 10 o 25.68 3.87 893s 1 1 1 -4 0 11 o 23.28 3.81 893s 1 1 1 -4 0 12 o 11.39 4.82 893s 1 1 1 -4 0 13 o 7.07 3.96 893s 1 1 1 -4 1 1 o 31.99 4.35 893s 1 1 1 -4 1 2 o 18.48 1.94 893s 1 1 1 -4 1 3 f 18.93 2.01 893s 1 1 1 -4 1 4 o 38.05 3.65 893s 1 1 1 -4 1 5 o 36.34 3.49 893s 1 1 1 -4 1 6 o 18.08 3.24 893s 1 1 1 -4 1 7 o 20.11 2.29 893s 1 1 1 -4 1 8 o 11.25 2.61 893s 1 1 1 -4 1 9 o 27.09 3.02 893s 1 1 1 -4 1 10 o 17.78 3.55 893s 1 1 1 -4 1 11 o 10.45 3.55 893s 1 1 1 -4 1 12 o 7.42 2.61 893s 1 1 1 -4 2 1 o 7.72 2.01 893s 1 1 1 -4 2 2 o 30.88 3.36 893s 1 1 1 -4 2 3 o 19.14 2.65 893s 1 1 1 -4 2 4 o 4.44 2.00 893s 1 1 1 -4 2 5 f 26.44 8.10 893s 1 1 1 -4 2 6 o 10.83 3.21 893s 1 1 1 -4 2 7 o 6.03 2.73 893s 1 1 1 -4 2 8 o 12.78 2.87 893s 1 1 1 -3 0 2 o 3.40 2.13 893s 1 1 1 -3 0 3 o 5.40 2.78 893s 1 1 1 -3 0 4 o 11.52 2.39 893s 1 1 1 -3 0 5 o 55.13 5.36 893s 1 1 1 -3 0 6 f 31.55 3.22 893s 1 1 1 -3 0 7 o 6.95 4.11 893s 1 1 1 -3 0 8 o 6.00 3.79 893s 1 1 1 -3 0 9 o 23.03 3.41 893s 1 1 1 -3 0 10 o 4.79 3.36 893s 1 1 1 -3 0 11 o 10.46 5.21 893s 1 1 1 -3 0 12 o 11.53 6.07 893s 1 1 1 -3 0 13 o 3.22 2.15 893s 1 1 1 -3 1 1 o 53.95 5.22 893s 1 1 1 -3 1 2 o 21.50 3.03 893s 1 1 1 -3 1 3 o 42.88 4.08 893s 1 1 1 -3 1 4 o 42.70 6.13 893s 1 1 1 -3 1 5 o 41.12 3.18 893s 1 1 1 -3 1 6 o 17.31 2.67 893s 1 1 1 -3 1 7 o 35.59 4.21 893s 1 1 1 -3 1 8 o 18.53 2.36 893s 1 1 1 -3 1 9 o 11.55 2.71 893s 1 1 1 -3 1 10 o 11.41 2.79 893s 1 1 1 -3 1 11 o 6.92 2.69 893s 1 1 1 -3 1 12 o 7.03 2.45 893s 1 1 1 -3 2 1 o 18.65 2.01 893s 1 1 1 -3 2 2 o 16.33 1.93 893s 1 1 1 -3 2 3 o 32.88 5.01 893s 1 1 1 -3 2 4 o 9.99 2.93 893s 1 1 1 -3 2 5 o 20.62 2.93 893s 1 1 1 -3 2 6 o 9.18 3.06 893s 1 1 1 -3 2 7 o 6.90 2.83 893s 1 1 1 -3 2 8 o 5.26 2.23 893s 1 1 1 -2 0 1 o 37.92 5.29 893s 1 1 1 -2 0 2 o 25.98 3.53 893s 1 1 1 -2 0 3 o 20.20 2.27 893s 1 1 1 -2 0 4 o 43.74 4.27 893s 1 1 1 -2 0 5 o 32.34 3.28 893s 1 1 1 -2 0 6 o 61.28 6.06 893s 1 1 1 -2 0 7 o 39.92 3.91 893s 1 1 1 -2 0 8 o 5.73 3.51 893s 1 1 1 -2 0 9 o 34.44 8.22 893s 1 1 1 -2 0 10 o 5.00 3.24 893s 1 1 1 -2 0 11 o 5.95 3.63 893s 1 1 1 -2 0 12 o 7.57 4.58 893s 1 1 1 -2 1 1 o 5.64 1.74 893s 1 1 1 -2 1 2 o 27.80 2.66 893s 1 1 1 -2 1 3 f 58.08 5.70 893s 1 1 1 -2 1 4 o 17.13 2.16 893s 1 1 1 -2 1 5 o 17.82 1.84 893s 1 1 1 -2 1 6 o 38.29 4.36 893s 1 1 1 -2 1 7 o 21.32 2.41 893s 1 1 1 -2 1 8 o 14.24 2.30 893s 1 1 1 -2 1 9 o 23.48 2.71 893s 1 1 1 -2 1 10 f 12.02 2.17 893s 1 1 1 -2 1 11 o 15.91 5.89 893s 1 1 1 -2 1 12 o 7.00 2.53 893s 1 1 1 -2 2 1 o 15.73 2.27 893s 1 1 1 -2 2 2 o 24.74 2.59 893s 1 1 1 -2 2 3 o 16.53 2.59 893s 1 1 1 -2 2 4 o 6.46 2.78 893s 1 1 1 -2 2 5 o 13.27 4.40 893s 1 1 1 -2 2 6 o 5.58 2.29 893s 1 1 1 -2 2 7 o 6.76 2.38 893s 1 1 1 -2 2 8 o 5.29 2.14 893s 1 1 1 -1 0 1 o 28.12 3.79 893s 1 1 1 -1 0 2 o 21.59 2.21 893s 1 1 1 -1 0 3 o 33.14 3.24 893s 1 1 1 -1 0 4 o 43.39 4.18 893s 1 1 1 -1 0 5 f 46.52 4.56 893s 1 1 1 -1 0 6 o 76.28 14.50 893s 1 1 1 -1 0 7 o 5.12 3.18 893s 1 1 1 -1 0 9 o 37.08 8.90 893s 1 1 1 -1 0 10 o 6.65 3.72 893s 1 1 1 -1 0 11 o 6.86 4.45 893s 1 1 1 -1 0 12 o 4.18 2.86 893s 1 1 1 -1 1 1 o 36.99 3.46 893s 1 1 1 -1 1 2 o 40.11 3.76 893s 1 1 1 -1 1 3 o 15.12 3.05 893s 1 1 1 -1 1 4 o 11.44 2.42 893s 1 1 1 -1 1 5 f 7.66 2.37 893s 1 1 1 -1 1 6 o 37.21 3.40 893s 1 1 1 -1 1 7 o 13.99 2.19 893s 1 1 1 -1 1 8 o 23.42 2.40 893s 1 1 1 -1 1 9 o 12.59 2.48 893s 1 1 1 -1 1 10 o 14.84 2.83 893s 1 1 1 -1 1 11 o 13.90 3.02 893s 1 1 1 -1 2 1 o 7.71 2.59 893s 1 1 1 -1 2 2 o 5.95 2.09 893s 1 1 1 -1 2 3 o 25.96 3.59 893s 1 1 1 -1 2 4 o 16.53 2.52 893s 1 1 1 -1 2 5 o 12.51 2.97 893s 1 1 1 -1 2 6 o 12.40 3.34 893s 1 1 1 -1 2 7 o 5.97 2.01 893s 1 1 1 -1 2 8 o 8.24 2.40 893s 1 1 1 0 0 1 o 40.04 3.82 893s 1 1 1 0 0 2 o 58.22 5.69 893s 1 1 1 0 0 3 o 47.47 4.60 893s 1 1 1 0 0 4 o 7.98 2.75 893s 1 1 1 0 0 5 o 50.74 7.60 893s 1 1 1 0 0 6 o 14.87 1.94 893s 1 1 1 0 0 7 o 3.62 2.41 893s 1 1 1 0 0 8 o 36.19 7.98 893s 1 1 1 0 0 9 o 10.11 5.01 893s 1 1 1 0 0 10 o 18.08 3.24 893s 1 1 1 0 0 11 o 12.35 4.26 893s 1 1 1 0 0 12 o 9.41 4.38 893s 1 1 1 0 1 1 o 92.10 11.26 893s 1 1 1 0 1 2 o 47.48 4.50 893s 1 1 1 0 1 3 o 22.08 2.22 893s 1 1 1 0 1 4 o 8.62 2.51 893s 1 1 1 0 1 5 o 24.16 1.98 893s 1 1 1 0 1 6 o 16.72 1.95 893s 1 1 1 0 1 7 o 5.50 2.46 893s 1 1 1 0 1 8 o 21.06 2.19 893s 1 1 1 0 1 9 o 5.99 2.45 893s 1 1 1 0 1 10 o 8.62 3.03 893s 1 1 1 0 1 11 o 9.15 3.06 893s 1 1 1 0 2 0 o 27.82 5.58 893s 1 1 1 0 2 1 o 29.68 4.10 893s 1 1 1 0 2 2 o 37.82 4.30 893s 1 1 1 0 2 3 o 14.42 1.91 893s 1 1 1 0 2 4 o 13.55 2.70 893s 1 1 1 0 2 5 o 8.67 3.07 893s 1 1 1 0 2 6 o 22.77 5.53 893s 1 1 1 0 2 7 o 5.74 2.12 893s 1 1 1 0 2 8 o 9.78 2.64 893s 1 1 1 1 0 1 o 10.19 1.09 893s 1 1 1 1 0 2 o 20.07 1.88 893s 1 1 1 1 0 3 o 28.76 2.81 893s 1 1 1 1 0 4 o 3.16 2.18 893s 1 1 1 1 0 5 o 35.75 3.54 893s 1 1 1 1 0 6 f 52.32 5.12 893s 1 1 1 1 0 7 o 37.09 5.54 893s 1 1 1 1 0 8 o 6.52 3.32 893s 1 1 1 1 0 9 o 3.67 2.45 893s 1 1 1 1 0 10 o 6.03 3.17 893s 1 1 1 1 0 11 o 3.13 2.20 893s 1 1 1 1 0 12 o 4.06 2.74 893s 1 1 1 1 1 0 o 34.97 2.64 893s 1 1 1 1 1 1 o 15.45 1.46 893s 1 1 1 1 1 2 o 27.96 2.66 893s 1 1 1 1 1 3 o 55.14 5.35 893s 1 1 1 1 1 4 o 14.46 1.65 893s 1 1 1 1 1 5 o 7.23 2.19 893s 1 1 1 1 1 6 o 10.31 2.54 893s 1 1 1 1 1 7 o 11.70 2.22 893s 1 1 1 1 1 8 o 11.24 2.14 893s 1 1 1 1 1 9 o 7.60 2.88 893s 1 1 1 1 1 10 o 8.83 2.34 893s 1 1 1 1 1 11 o 12.55 3.17 893s 1 1 1 1 2 0 o 24.36 5.60 893s 1 1 1 1 2 1 o 13.12 2.09 893s 1 1 1 1 2 2 o 10.37 2.52 893s 1 1 1 1 2 3 o 14.39 1.98 893s 1 1 1 1 2 4 o 26.67 8.23 893s 1 1 1 1 2 5 o 22.53 5.20 893s 1 1 1 1 2 6 o 13.94 2.61 893s 1 1 1 1 2 7 o 7.45 2.38 893s 1 1 1 1 2 8 o 4.51 2.05 893s 1 1 1 2 0 1 o 13.06 1.30 893s 1 1 1 2 0 2 o 10.37 1.36 893s 1 1 1 2 0 3 o 20.89 2.04 893s 1 1 1 2 0 4 o 45.12 4.31 893s 1 1 1 2 0 5 o 15.37 1.91 893s 1 1 1 2 0 6 o 28.38 2.79 893s 1 1 1 2 0 7 o 16.02 2.31 893s 1 1 1 2 0 8 o 3.40 2.35 893s 1 1 1 2 0 9 o 4.23 2.72 893s 1 1 1 2 0 10 o 3.89 2.43 893s 1 1 1 2 0 11 o 10.26 3.01 893s 1 1 1 2 1 0 o 34.61 2.64 893s 1 1 1 2 1 1 o 53.93 5.22 893s 1 1 1 2 1 2 o 20.62 2.08 893s 1 1 1 2 1 3 o 44.45 3.37 893s 1 1 1 2 1 4 o 24.41 2.00 893s 1 1 1 2 1 5 o 40.33 4.58 893s 1 1 1 2 1 6 o 41.76 5.03 893s 1 1 1 2 1 7 o 28.20 3.43 893s 1 1 1 2 1 8 o 33.56 3.76 893s 1 1 1 2 1 9 o 4.41 1.97 893s 1 1 1 2 1 10 o 15.24 3.10 893s 1 1 1 2 2 0 o 25.09 3.38 893s 1 1 1 2 2 1 o 9.96 2.30 893s 1 1 1 2 2 2 o 15.79 2.28 893s 1 1 1 2 2 3 f 23.73 2.57 893s 1 1 1 2 2 4 o 31.55 3.47 893s 1 1 1 2 2 5 o 22.42 5.53 893s 1 1 1 2 2 6 o 21.84 3.98 893s 1 1 1 2 2 7 o 11.92 3.24 893s 1 1 1 3 0 1 o 20.22 2.60 893s 1 1 1 3 0 2 o 15.58 1.67 893s 1 1 1 3 0 3 o 43.75 4.24 893s 1 1 1 3 0 4 o 53.24 5.13 893s 1 1 1 3 0 5 o 9.04 2.60 893s 1 1 1 3 0 6 o 16.05 2.16 893s 1 1 1 3 0 7 o 10.18 3.61 893s 1 1 1 3 0 8 f 21.57 2.93 893s 1 1 1 3 0 9 o 5.10 2.75 893s 1 1 1 3 0 10 o 9.06 4.48 893s 1 1 1 3 0 11 o 7.20 4.29 893s 1 1 1 3 1 0 o 6.01 1.35 893s 1 1 1 3 1 1 o 38.17 5.32 893s 1 1 1 3 1 2 o 88.61 10.65 893s 1 1 1 3 1 3 o 46.76 4.49 893s 1 1 1 3 1 4 o 21.38 1.98 893s 1 1 1 3 1 5 o 10.82 1.68 893s 1 1 1 3 1 6 o 9.92 1.96 893s 1 1 1 3 1 7 o 13.79 1.74 893s 1 1 1 3 1 8 o 18.26 2.25 893s 1 1 1 3 1 9 o 10.74 2.36 893s 1 1 1 3 1 10 o 4.53 1.95 893s 1 1 1 3 2 0 o 36.54 6.90 893s 1 1 1 3 2 1 o 7.87 2.79 893s 1 1 1 3 2 2 o 18.30 2.61 893s 1 1 1 3 2 3 o 17.39 2.45 893s 1 1 1 3 2 4 o 17.18 2.74 893s 1 1 1 3 2 5 o 13.02 2.60 893s 1 1 1 3 2 6 o 4.72 1.98 893s 1 1 1 4 0 1 o 3.64 2.08 893s 1 1 1 4 0 2 o 63.80 6.24 893s 1 1 1 4 0 3 o 19.19 1.93 893s 1 1 1 4 0 4 o 63.44 6.28 893s 1 1 1 4 0 5 o 30.78 6.03 893s 1 1 1 4 0 6 o 9.03 2.53 893s 1 1 1 4 0 7 o 18.16 2.40 893s 1 1 1 4 0 8 o 8.94 3.14 893s 1 1 1 4 0 9 o 6.87 3.36 893s 1 1 1 4 0 10 o 9.58 4.40 893s 1 1 1 4 1 0 o 24.37 2.38 893s 1 1 1 4 1 1 o 49.48 4.80 893s 1 1 1 4 1 2 o 10.45 1.03 893s 1 1 1 4 1 3 o 15.01 1.64 893s 1 1 1 4 1 4 o 4.52 1.88 893s 1 1 1 4 1 5 f 35.40 3.27 893s 1 1 1 4 1 6 o 8.15 2.10 893s 1 1 1 4 1 7 o 9.72 1.59 893s 1 1 1 4 1 8 o 5.93 1.88 893s 1 1 1 4 1 9 o 13.31 3.66 893s 1 1 1 4 2 0 o 12.03 2.31 893s 1 1 1 4 2 1 o 13.76 1.98 893s 1 1 1 4 2 2 o 10.87 2.55 893s 1 1 1 4 2 3 o 7.78 2.40 893s 1 1 1 4 2 4 o 19.45 4.53 893s 1 1 1 4 2 5 o 11.32 4.24 893s 1 1 1 4 2 6 o 7.29 3.50 893s 1 1 1 5 0 1 o 67.42 11.14 893s 1 1 1 5 0 2 o 13.50 3.13 893s 1 1 1 5 0 3 o 22.37 2.21 893s 1 1 1 5 0 4 o 56.42 6.72 893s 1 1 1 5 0 5 o 25.46 3.07 893s 1 1 1 5 0 6 o 38.61 4.82 893s 1 1 1 5 0 7 o 14.33 2.65 893s 1 1 1 5 0 8 f 4.56 2.78 893s 1 1 1 5 0 9 o 8.50 3.26 893s 1 1 1 5 1 0 o 21.65 2.85 893s 1 1 1 5 1 1 o 12.29 1.67 893s 1 1 1 5 1 2 o 11.21 3.27 893s 1 1 1 5 1 3 o 9.29 2.49 893s 1 1 1 5 1 4 o 12.76 2.42 893s 1 1 1 5 1 5 o 4.61 0.86 893s 1 1 1 5 1 6 o 21.81 2.38 893s 1 1 1 5 1 7 o 11.05 2.11 893s 1 1 1 5 1 8 o 4.27 1.64 893s 1 1 1 5 2 0 o 17.82 3.76 893s 1 1 1 5 2 1 o 13.94 3.96 893s 1 1 1 5 2 2 o 14.67 2.97 893s 1 1 1 5 2 3 o 12.27 4.35 893s 1 1 1 5 2 4 o 12.90 2.88 893s 1 1 1 5 2 5 o 8.21 2.77 893s 1 1 1 6 0 1 o 4.02 2.51 893s 1 1 1 6 0 2 o 14.11 3.04 893s 1 1 1 6 0 4 o 44.86 5.41 893s 1 1 1 6 0 5 f 22.85 4.74 893s 1 1 1 6 0 6 o 41.69 6.63 893s 1 1 1 6 0 7 o 7.42 2.96 893s 1 1 1 6 0 8 o 13.47 5.61 893s 1 1 1 6 1 0 o 25.42 2.26 893s 1 1 1 6 1 1 o 9.87 3.01 893s 1 1 1 6 1 2 o 28.37 5.85 893s 1 1 1 6 1 3 o 16.66 3.91 893s 1 1 1 6 1 4 o 23.02 5.62 893s 1 1 1 6 1 6 o 26.51 4.88 893s 1 1 1 6 1 7 o 3.67 1.58 893s 1 1 1 6 2 0 o 8.22 2.50 893s 1 1 1 6 2 2 o 9.67 2.35 893s 1 1 1 6 2 3 o 3.73 1.60 893s 1 1 1 7 0 1 o 10.99 3.37 893s 1 1 1 7 0 2 o 17.23 3.99 893s 1 1 1 7 0 3 o 5.15 2.69 893s 1 1 1 7 0 4 o 5.19 3.01 893s 1 1 1 7 0 5 o 23.76 3.00 893s 1 1 1 7 0 6 o 5.48 3.05 893s 1 1 1 7 0 7 o 6.05 3.12 893s 1 1 1 7 0 8 o 7.94 3.69 893s 1 1 1 7 1 0 o 33.08 3.93 893s 1 1 1 7 1 1 o 8.43 3.00 893s 1 1 1 7 1 2 o 10.12 3.61 893s 1 1 1 7 1 3 o 14.66 3.85 893s 1 1 1 7 1 4 o 9.43 3.13 893s 1 1 1 7 1 6 o 14.64 4.20 893s 1 1 1 7 2 0 o 14.80 3.92 893s 1 1 1 7 2 1 o 6.02 2.00 893s 1 1 1 8 0 2 o 29.07 8.06 893s 1 1 1 8 0 3 o 5.29 2.84 893s 1 1 1 8 0 4 o 22.81 5.95 893s 1 1 1 8 0 5 o 4.11 2.70 893s 1 1 1 8 1 0 o 7.24 1.50 893s 1 1 1 8 1 1 o 8.85 3.06 893s 1 1 1 8 1 2 o 6.83 3.09 893s 1 1 1 8 1 3 o 18.14 5.99 893s 1 1 1 9 0 1 o 13.49 3.22 893s 1 1 1 9 0 2 o 11.72 3.95 893s 1 1 1 10 0 2 o 7.39 3.73 893s 1 1 1 10 1 0 o 16.08 6.44 893s #END OF REFLECTIONS 893s 893s Starting iotbx.fetch_pdb 893s on Sat Mar 22 14:59:38 2025 by ubuntu 893s =============================================================================== 893s 893s Processing files: 893s ------------------------------------------------------------------------------- 893s 893s No files found 893s 893s Processing PHIL parameters: 893s ------------------------------------------------------------------------------- 893s 893s Adding command-line PHIL: 893s ------------------------- 893s action=all 893s 893s Final processed PHIL parameters: 893s ------------------------------------------------------------------------------- 893s fetch { 893s pdb_ids = "6yvd" 893s action = model data sequence half_maps *all 893s } 893s 893s 893s Starting job 893s =============================================================================== 893s Validating inputs: 893s 893s Model in PDB format saved to /tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/python3.13/6yvd.pdb 893s Model in mmCIF format saved to /tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/python3.13/6yvd.cif 893s Couldn't download sf for 6yvd at https://files.rcsb.org/download/6yvd-sf.cif.gz. 893s Cryo-EM map saved to /tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/python3.13/emd_10944.map.gz 893s Cryo-EM half map 1 saved to /tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/python3.13/emd_10944_half_map_1.map.gz 893s Cryo-EM half map 2 saved to /tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/python3.13/emd_10944_half_map_2.map.gz 893s Sequence saved to /tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/python3.13/6yvd.fa 893s 893s =============================================================================== 893s Job complete 893s Total CPU time: 0.61 seconds 893s Starting iotbx.fetch_pdb 893s on Sat Mar 22 14:59:52 2025 by ubuntu 893s =============================================================================== 893s 893s Processing files: 893s ------------------------------------------------------------------------------- 893s 893s No files found 893s 893s Processing PHIL parameters: 893s ------------------------------------------------------------------------------- 893s 893s Adding command-line PHIL: 893s ------------------------- 893s action=model 893s 893s Final processed PHIL parameters: 893s ------------------------------------------------------------------------------- 893s fetch { 893s pdb_ids = "6yvd" 893s } 893s 893s 893s Starting job 893s =============================================================================== 893s Validating inputs: 893s 893s Model in PDB format saved to /tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/python3.13/6yvd.pdb 893s Model in mmCIF format saved to /tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/python3.13/6yvd.cif 893s 893s =============================================================================== 893s Job complete 893s Total CPU time: 0.48 seconds 893s Starting iotbx.fetch_pdb 893s on Sat Mar 22 14:59:55 2025 by ubuntu 893s =============================================================================== 893s 893s Processing files: 893s ------------------------------------------------------------------------------- 893s 893s No files found 893s 893s Processing PHIL parameters: 893s ------------------------------------------------------------------------------- 893s 893s Adding command-line PHIL: 893s ------------------------- 893s action=model 893s 893s Final processed PHIL parameters: 893s ------------------------------------------------------------------------------- 893s fetch { 893s pdb_ids = "6yvd" 893s } 893s 893s 893s Starting job 893s =============================================================================== 893s Validating inputs: 893s 893s Model in PDB format saved to /tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/python3.13/6yvd.pdb 893s Model in mmCIF format saved to /tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/python3.13/6yvd.cif 893s 893s =============================================================================== 893s Job complete 893s Total CPU time: 0.48 seconds 893s Starting iotbx.fetch_pdb 893s on Sat Mar 22 14:59:59 2025 by ubuntu 893s =============================================================================== 893s 893s Processing files: 893s ------------------------------------------------------------------------------- 893s 893s No files found 893s 893s Processing PHIL parameters: 893s ------------------------------------------------------------------------------- 893s 893s Adding command-line PHIL: 893s ------------------------- 893s action=data 893s 893s Final processed PHIL parameters: 893s ------------------------------------------------------------------------------- 893s fetch { 893s pdb_ids = "6yvd" 893s action = model *data sequence half_maps all 893s } 893s 893s 893s Starting job 893s =============================================================================== 893s Validating inputs: 893s 893s Couldn't download sf for 6yvd at https://files.rcsb.org/download/6yvd-sf.cif.gz. 893s Cryo-EM map saved to /tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/python3.13/emd_10944.map.gz 893s 893s =============================================================================== 893s Job complete 893s Total CPU time: 0.50 seconds 893s Starting iotbx.fetch_pdb 893s on Sat Mar 22 15:00:03 2025 by ubuntu 893s =============================================================================== 893s 893s Processing files: 893s ------------------------------------------------------------------------------- 893s 893s No files found 893s 893s Processing PHIL parameters: 893s ------------------------------------------------------------------------------- 893s 893s Adding command-line PHIL: 893s ------------------------- 893s action=half_maps 893s 893s Final processed PHIL parameters: 893s ------------------------------------------------------------------------------- 893s fetch { 893s pdb_ids = "6yvd" 893s action = model data sequence *half_maps all 893s } 893s 893s 893s Starting job 893s =============================================================================== 893s Validating inputs: 893s 893s Cryo-EM half map 1 saved to /tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/python3.13/emd_10944_half_map_1.map.gz 893s Cryo-EM half map 2 saved to /tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/python3.13/emd_10944_half_map_2.map.gz 893s 893s =============================================================================== 893s Job complete 893s Total CPU time: 0.53 seconds 893s Starting iotbx.fetch_pdb 893s on Sat Mar 22 15:00:10 2025 by ubuntu 893s =============================================================================== 893s 893s Processing files: 893s ------------------------------------------------------------------------------- 893s 893s No files found 893s 893s Processing PHIL parameters: 893s ------------------------------------------------------------------------------- 893s 893s Adding command-line PHIL: 893s ------------------------- 893s action=sequence 893s 893s Final processed PHIL parameters: 893s ------------------------------------------------------------------------------- 893s fetch { 893s pdb_ids = "6yvd" 893s action = model data *sequence half_maps all 893s } 893s 893s 893s Starting job 893s =============================================================================== 893s Validating inputs: 893s 893s Sequence saved to /tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/python3.13/6yvd.fa 893s 893s =============================================================================== 893s Job complete 893s Total CPU time: 0.49 seconds 893s Starting iotbx.fetch_pdb 893s on Sat Mar 22 15:00:11 2025 by ubuntu 893s =============================================================================== 893s 893s Processing files: 893s ------------------------------------------------------------------------------- 893s 893s No files found 893s 893s Processing PHIL parameters: 893s ------------------------------------------------------------------------------- 893s 893s Adding command-line PHIL: 893s ------------------------- 893s action=all 893s 893s Final processed PHIL parameters: 893s ------------------------------------------------------------------------------- 893s fetch { 893s pdb_ids = "6yvd" 893s action = model data sequence half_maps *all 893s } 893s 893s 893s Starting job 893s =============================================================================== 893s Validating inputs: 893s 893s Model in PDB format saved to /tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/python3.13/6yvd.pdb 893s Model in mmCIF format saved to /tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/python3.13/6yvd.cif 893s Couldn't download sf for 6yvd at https://files.rcsb.org/download/6yvd-sf.cif.gz. 893s Cryo-EM map saved to /tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/python3.13/emd_10944.map.gz 893s Cryo-EM half map 1 saved to /tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/python3.13/emd_10944_half_map_1.map.gz 893s Cryo-EM half map 2 saved to /tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/python3.13/emd_10944_half_map_2.map.gz 893s Sequence saved to /tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/python3.13/6yvd.fa 893s 893s =============================================================================== 893s Job complete 893s Total CPU time: 0.58 seconds 893s OK 893s u+s,u,s: 0.36 0.34 0.02 893s libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_tokenizer.py" [OK] 0.1s 893s Time: 0.06 893s Return code: 0 893s OKs: 1 893s Standard out: 893s OK 893s libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst.py" [OK] 0.3s 893s Time: 0.27 893s Return code: 0 893s OKs: 1 893s Standard out: 893s OK 893s libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_experimental.py" [OK] 0.1s 893s Time: 0.06 893s Return code: 0 893s OKs: 1 893s Standard out: 893s OK 893s libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_interface.py" [OK] 0.1s 893s Time: 0.10 893s Return code: 0 893s OKs: 1 893s Standard out: 893s phenix module not available: skipping advanced tests 893s phaser module not available: skipping advanced tests 893s OK 893s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_object_oriented_patterns.py" [OK] 0.1s 893s Time: 0.07 893s Return code: 0 893s OKs: 0 893s libtbx.python "/usr/lib/python3/dist-packages/libtbx/find_reference_cycles.py" [OK] 0.0s 893s Time: 0.04 893s Return code: 0 893s OKs: 1 893s Standard out: 893s OK 893s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_binary_search.py" [OK] 0.0s 893s Time: 0.03 893s Return code: 0 893s OKs: 1 893s Standard out: 893s OK 893s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_topological_sort.py" [OK] 0.0s 893s Time: 0.03 893s Return code: 0 893s OKs: 1 893s Standard out: 893s OK 894s libtbx.python "/usr/lib/python3/dist-packages/libtbx/clusterTests.py" [OK] 0.2s 894s Time: 0.21 894s Return code: 0 894s OKs: 1 894s Standard out: 894s ---------------------------------------------------------------------- 894s Ran 13 tests in 0.151s 894s 894s OK 894s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_citations.py" [OK] 0.2s 894s Time: 0.21 894s Return code: 0 894s OKs: 1 894s Standard out: 894s OK 894s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_python_code_parsing.py" [OK] 0.0s 894s Time: 0.04 894s Return code: 0 894s OKs: 1 894s Standard out: 894s OK 894s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_representation.py" [OK] 0.0s 894s Time: 0.03 894s Return code: 0 894s OKs: 0 894s Standard out: 894s 99999999999999950039963891867 894s 99999999999999963917751699682 894s 99999999999999977795539507496 894s 99999999999999991673327315311 894s 100000000000000005551115123125 894s 100000000000000019428902930940 894s 100000000000000033306690738754 894s 100000000000000047184478546569 894s 100000000000000061062266354383 894s 100000000000000074940054162198 894s 100000000000000088817841970012 894s 100000000000000102695629777826 894s 100000000000000116573417585641 894s 100000000000000130451205393455 894s 100000000000000144328993201270 894s 100000000000000158206781009084 894s 100000000000000172084568816899 894s 100000000000000185962356624713 894s 100000000000000199840144432528 894s 100000000000000213717932240342 894s 100000000000000227595720048157 894s 100000000000000241473507855971 894s 100000000000000255351295663786 894s 100000000000000269229083471600 894s 100000000000000283106871279414 894s 100000000000000296984659087229 894s 100000000000000310862446895043 894s 100000000000000324740234702858 894s 100000000000000338618022510672 894s 100000000000000352495810318487 894s BEst 450359962737049.6 894s 900719925474099.2 894s 55.32192809488736 894s 56.32192809488736 894s True 894s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_find_unused_imports.py" [OK] 0.0s 894s Time: 0.03 894s Return code: 0 894s OKs: 1 894s Standard out: 894s OK 894s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_dlite.py" [OK] 2.1s 894s Time: 2.08 894s Return code: 0 894s OKs: 1 894s Standard out: 894s OK 894s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_version.py" [OK] 0.1s 894s Time: 0.07 894s Return code: 0 894s OKs: 0 894s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_program_template.py" [OK] 0.3s 894s Time: 0.32 894s Return code: 0 894s OKs: 0 894s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp_multicore.py" [OK] 0.3s 894s Time: 0.31 894s Return code: 0 894s OKs: 0 894s Standard out: 894s [1] 1 894s [2] 2 894s [3] 6 894s [4] 24 894s [5] 120 894s [6] 720 894s [7] 5040 896s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 896s 1 896s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 896s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_xmlrpc_utils.py" [EXPECTED FAIL] 1.9s 896s Time: 1.92 896s Return code: 1 896s OKs: 0 896s Standard error: 896s Traceback (most recent call last): 896s File "/usr/lib/python3/dist-packages/libtbx/tst_xmlrpc_utils.py", line 42, in 896s exercise() 896s ~~~~~~~~^^ 896s File "/usr/lib/python3/dist-packages/libtbx/tst_xmlrpc_utils.py", line 15, in exercise 896s server = xmlrpc_utils.external_program_server(command=full_cmd, 896s program_id="TEST", 896s timeout=None, 896s cache_requests=True, 896s log=log) 896s TypeError: external_program_server.__init__() got an unexpected keyword argument 'command' 899s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 899s 139 899s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 899s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_smoothing.py" [FAIL] 2.9s 899s Time: 2.90 899s Return code: 139 899s OKs: 0 899s Standard error: 899s Segmentation fault (core dumped) 900s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_runtime_utils.py" [OK] 6.2s 900s Time: 6.18 900s Return code: 0 900s OKs: 1 900s Standard out: 900s OK 902s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 902s 139 902s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 902s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_genetic_algorithm_with_mp.py" [FAIL] 3.2s 902s Time: 3.19 902s Return code: 139 902s OKs: 0 902s Standard error: 902s Segmentation fault (core dumped) 902s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_1" [OK] 0.0s 902s Time: 0.01 902s Return code: 0 902s OKs: 1 902s Standard out: 902s Total OK: 511 902s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_2" [OK] 0.0s 902s Time: 0.00 902s Return code: 0 902s OKs: 1 902s Standard out: 902s Total OK: 268 902s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_3" [OK] 0.0s 902s Time: 0.00 902s Return code: 0 902s OKs: 1 902s Standard out: 902s Total OK: 164 902s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_4" [OK] 0.0s 902s Time: 0.01 902s Return code: 0 902s OKs: 1 902s Standard out: 902s Total OK: 1420 903s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_5" [OK] 0.0s 903s Time: 0.00 903s Return code: 0 903s OKs: 1 903s Standard out: 903s Total OK: 23 903s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_vec3" [OK] 0.0s 903s Time: 0.00 903s Return code: 0 903s OKs: 1 903s Standard out: 903s Total OK: 83 903s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_unsigned_float_arithmetic" [OK] 0.0s 903s Time: 0.00 903s Return code: 0 903s OKs: 1 903s Standard out: 903s OK 903s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_mat3" [OK] 0.0s 903s Time: 0.01 903s Return code: 0 903s OKs: 1 903s Standard out: 903s Total OK: 129 903s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_sym_mat3" [OK] 0.0s 903s Time: 0.00 903s Return code: 0 903s OKs: 1 903s Standard out: 903s Total OK: 91 903s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_ref_matrix_facet" [OK] 0.0s 903s Time: 0.00 903s Return code: 0 903s OKs: 1 903s Standard out: 903s OK 903s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_accessors" [OK] 0.0s 903s Time: 0.00 903s Return code: 0 903s OKs: 1 903s Standard out: 903s Total OK: 1730 903s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_optional_copy" [OK] 0.0s 903s Time: 0.01 903s Return code: 0 903s OKs: 1 903s Standard out: 903s OK 903s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_rectangular_full_packed" [OK] 0.0s 903s Time: 0.00 903s Return code: 0 903s OKs: 0 903s Standard out: 903s Test of accessor for rectangular full packed format skipped 903s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_flex_argument_passing.py" [OK] 0.1s 903s Time: 0.15 903s Return code: 0 903s OKs: 1 903s Standard out: 903s OK 903s "/usr/lib/cctbx/python3.13/scitbx/serialization/tst_base_256" [OK] 0.4s 903s Time: 0.37 903s Return code: 0 903s OKs: 1 903s Standard out: 903s OK 905s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 905s 139 905s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 905s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_basic.py" [FAIL] 5.0s 905s Standard error: 905s Segmentation fault (core dumped) 905s Time: 5.00 905s Return code: 139 905s OKs: 1 905s Standard out: 905s b'\n\xc3\x85 LATIN CAPITAL LETTER A WITH RING ABOVE\n\xc2\xb0 DEGREE SIGN\n\xce\x91 GREEK CAPITAL LETTER ALPHA\n\xce\x92 GREEK CAPITAL LETTER BETA\n\xce\x93 GREEK CAPITAL LETTER GAMMA = gamma function\n\xce\x94 GREEK CAPITAL LETTER DELTA\n\xce\x95 GREEK CAPITAL LETTER EPSILON\n\xce\x96 GREEK CAPITAL LETTER ZETA\n\xce\x97 GREEK CAPITAL LETTER ETA\n\xce\x98 GREEK CAPITAL LETTER THETA\n\xce\x99 GREEK CAPITAL LETTER IOTA = iota adscript\n\xce\x9a GREEK CAPITAL LETTER KAPPA\n\xce\x9b GREEK CAPITAL LETTER LAMDA\n\xce\x9c GREEK CAPITAL LETTER MU\n\xce\x9d GREEK CAPITAL LETTER NU\n\xce\x9e GREEK CAPITAL LETTER XI\n\xce\x9f GREEK CAPITAL LETTER OMICRON\n\xce\xa0 GREEK CAPITAL LETTER PI\n\xce\xa1 GREEK CAPITAL LETTER RHO\n\xce\xa3 GREEK CAPITAL LETTER SIGMA\n\xce\xa4 GREEK CAPITAL LETTER TAU\n\xce\xa5 GREEK CAPITAL LETTER UPSILON\n\xce\xa6 GREEK CAPITAL LETTER PHI\n\xce\xa7 GREEK CAPITAL LETTER CHI\n\xce\xa8 GREEK CAPITAL LETTER PSI\n\xce\xa9 GREEK CAPITAL LETTER OMEGA\n\xcf\x86 GREEK SMALL LETTER PHI\n\xcf\x87 GREEK SMALL LETTER CHI\n\xcf\x88 GREEK SMALL LETTER PSI\n\xcf\x89 GREEK SMALL LETTER OMEGA\n\xce\xb2 greek small letter beta\n\xce\xb8 greek small letter theta\n\xce\xa5 greek capital letter upsilon\n\xcf\x86 greek small letter phi\n\xcf\x80 greek small letter pi\n\xce\xb2 GREEK SMALL LETTER BETA\n\xc3\x9f latin small letter sharp s\n\xce\xb3 GREEK SMALL LETTER GAMMA\n\xce\xb4 GREEK SMALL LETTER DELTA\n\xce\xb5 GREEK SMALL LETTER EPSILON\n\xce\xb6 GREEK SMALL LETTER ZETA\n\xce\xb7 GREEK SMALL LETTER ETA\n\xce\xb8 GREEK SMALL LETTER THETA\n\xce\xb9 GREEK SMALL LETTER IOTA\n\xce\xba GREEK SMALL LETTER KAPPA\n\xce\xbb GREEK SMALL LETTER LAMDA = lambda\n\xce\xbc GREEK SMALL LETTER MU\n\xc2\xb5 micro sign\n\xce\xbd GREEK SMALL LETTER NU\n\xce\xbe GREEK SMALL LETTER XI\n\xce\xbf GREEK SMALL LETTER OMICRON\n\xcf\x80 GREEK SMALL LETTER PI math constant 3.141592...\n\xcf\x81 GREEK SMALL LETTER RHO\n\xcf\x82 GREEK SMALL LETTER FINAL SIGMA\n\xcf\x83 GREEK SMALL LETTER SIGMA\n\xcf\x84 GREEK SMALL LETTER TAU\n\xcf\x85 GREEK SMALL LETTER UPSILON\n' 905s Size of an empty container. 905s Some of those containers store a pointer to a raw storage: 905s the 'cumulative' entry refers to the total memory footprint 905s whereas the other entry does not include the raw storage. 905s 905s int : 4 905s af::ref : 32 905s scitbx::auto_array : 8 905s boost::shared_array : 16 905s boost::ptr_vector : 24 905s std::vector : 24 905s af::shared : 16 905s af::shared [cumulative] : 64 905s std::valarray : 16 905s af::versa : 24 905s af::versa > : 280 905s af::versa > [cumulative] : 328 905s 905s double : 8 905s af::ref : 32 905s scitbx::auto_array : 8 905s boost::shared_array : 16 905s boost::ptr_vector : 24 905s std::vector : 24 905s af::shared : 16 905s af::shared [cumulative] : 64 905s std::valarray : 16 905s af::versa : 24 905s af::versa > : 280 905s af::versa > [cumulative] : 328 905s 905s OK 908s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 908s 139 908s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 908s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_minimum_covering_ellipsoid.py" [FAIL] 4.9s 908s Time: 4.88 908s Return code: 139 908s OKs: 0 908s Standard error: 908s Segmentation fault (core dumped) 911s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 911s 139 911s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 911s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py" [FAIL] 5.3s 911s Standard error: 911s Segmentation fault (core dumped) 911s Time: 5.26 911s Return code: 139 911s OKs: 0 911s "/usr/lib/cctbx/python3.13/scitbx/math/tests/tst" [OK] 0.0s 911s Time: 0.00 911s Return code: 0 911s OKs: 2 911s Standard out: 911s copysign(3.f, +0.f) = 3 instead of 0.f as per C99 911s copysign(3.f, -0.f) = -3 instead of -0.f as per C99 911s linear interpolation test OK 911s OK 911s "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_givens" [OK] 0.0s 911s Time: 0.00 911s Return code: 0 911s OKs: 1 911s Standard out: 911s OK 911s "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_householder" [OK] 0.0s 911s Time: 0.01 911s Return code: 0 911s OKs: 1 911s Standard out: 911s OK 911s "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_svd" [OK] 0.0s 911s Time: 0.01 911s Return code: 0 911s OKs: 1 911s Standard out: 911s OK 911s "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_cholesky" [OK] 0.2s 911s Time: 0.17 911s Return code: 0 911s OKs: 1 911s Standard out: 911s Exercising sizes up to 100 911s Hilbert 911s Condition 1 911s Condition 2 911s Condition 3 911s Condition 4 911s OK 911s libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/tests/tst_row_echelon.py" [OK] 0.1s 911s Time: 0.08 911s Return code: 0 911s OKs: 1 911s Standard out: 911s OK 911s libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/tests/tst_householder.py" [OK] 0.2s 911s Time: 0.17 911s Return code: 0 911s OKs: 1 911s Standard out: 911s OK 911s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_matrix.py" [OK] 0.2s 911s Time: 0.16 911s Return code: 0 911s OKs: 1 911s Standard out: 911s OK 913s Standard error: 913s Segmentation fault (core dumped) 913s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 913s 139 913s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 913s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_cubic_equation.py" [FAIL] 5.4s 913s Time: 5.41 913s Return code: 139 913s OKs: 0 916s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 916s 139 916s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 916s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_cholesky.py" [FAIL] 4.8s 916s Time: 4.79 916s Return code: 139 916s OKs: 0 916s Standard error: 916s Segmentation fault (core dumped) 919s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 919s 139 919s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 919s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_svd.py" [FAIL] 5.2s 919s Time: 5.25 919s Return code: 139 919s OKs: 0 919s Standard error: 919s Segmentation fault (core dumped) 921s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 921s 139 921s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 921s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_eigensystem.py" [FAIL] 5.2s 921s Time: 5.20 921s Return code: 139 921s OKs: 0 921s Standard error: 921s Segmentation fault (core dumped) 924s Standard error: 924s Segmentation fault (core dumped) 924s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 924s 139 924s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 924s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_lapack_svd.py" [FAIL] 5.2s 924s Time: 5.24 924s Return code: 139 924s OKs: 0 924s libtbx.python "/usr/lib/python3/dist-packages/scitbx/error/tst_error.py" [OK] 0.1s 924s Time: 0.07 924s Return code: 0 924s OKs: 1 924s Standard out: 924s OK 924s libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_map.py" [OK] 0.1s 924s Time: 0.06 924s Return code: 0 924s OKs: 1 924s Standard out: 924s OK 924s libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_set.py" [OK] 0.1s 924s Time: 0.06 924s Return code: 0 924s OKs: 1 924s Standard out: 924s OK 924s libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_vector.py" [OK] 0.1s 924s Time: 0.06 924s Return code: 0 924s OKs: 1 924s Standard out: 924s OK 927s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 927s 139 927s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 927s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_lapack_dsyev.py" [FAIL] 5.4s 927s Time: 5.38 927s Return code: 139 927s OKs: 0 927s Standard error: 927s Segmentation fault (core dumped) 929s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 929s 139 929s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 929s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/regression_test.py" [FAIL] 5.1s 929s Time: 5.08 929s Return code: 139 929s OKs: 0 929s Standard error: 929s Segmentation fault (core dumped) 932s Standard error: 932s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 932s 139 932s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 932s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_flex.py" [FAIL] 5.7s 932s Time: 5.74 932s Return code: 139 932s OKs: 0 932s Segmentation fault (core dumped) 935s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 935s 139 935s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 935s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_numpy_bridge.py" [FAIL] 5.7s 935s Time: 5.73 935s Return code: 139 935s OKs: 0 935s Standard error: 935s Segmentation fault (core dumped) 937s Standard error: 937s Segmentation fault (core dumped) 937s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 937s 139 937s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 937s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_smart_selection.py" [FAIL] 5.1s 937s Time: 5.12 937s Return code: 139 937s OKs: 0 940s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 940s 139 940s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 940s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_shared.py" [FAIL] 5.0s 940s Time: 5.01 940s Return code: 139 940s OKs: 0 940s Standard error: 940s Segmentation fault (core dumped) 943s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py" [OK] 2.9s 943s Time: 2.94 943s Return code: 0 943s OKs: 1 943s Standard out: 943s Loop over af::shared: 943s data_size=1000, n_repeats=30000 943s size+begin inside loop: 0.22 s 943s begin outside loop: 0.19 s 943s size+begin outside loop: 0.12 s 943s 943s data_size=10000, n_repeats=3000 943s size+begin inside loop: 0.23 s 943s begin outside loop: 0.19 s 943s size+begin outside loop: 0.12 s 943s 943s data_size=100000, n_repeats=300 943s size+begin inside loop: 0.23 s 943s begin outside loop: 0.19 s 943s size+begin outside loop: 0.12 s 943s 943s data_size=1000000, n_repeats=30 943s size+begin inside loop: 0.23 s 943s begin outside loop: 0.19 s 943s size+begin outside loop: 0.11 s 943s 943s data_size=10000000, n_repeats=3 943s size+begin inside loop: 0.23 s 943s begin outside loop: 0.19 s 943s size+begin outside loop: 0.12 s 943s 943s OK 943s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_cubicle_neighbors.py" [OK] 0.1s 943s Time: 0.15 943s Return code: 0 943s OKs: 1 943s Standard out: 943s OK 943s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_r3_utils.py" [OK] 0.2s 943s Time: 0.16 943s Return code: 0 943s OKs: 1 943s Standard out: 943s OK 944s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_regular_grid_on_unit_sphere.py" [OK] 0.9s 944s Time: 0.95 944s Return code: 0 944s OKs: 0 947s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 947s 139 947s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 947s libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/__init__.py" [FAIL] 3.0s 947s Time: 3.00 947s Return code: 139 947s OKs: 0 947s Standard error: 947s Segmentation fault (core dumped) 950s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 950s 139 950s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 950s libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_random_transform.py" [FAIL] 2.9s 950s Time: 2.94 950s Return code: 139 950s OKs: 0 950s Standard error: 950s Segmentation fault (core dumped) 950s libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_graph.py" [OK] 0.0s 950s Time: 0.05 950s Return code: 0 950s OKs: 1 950s Standard out: 950s OK 950s libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_robust.py" [OK] 0.1s 950s Time: 0.14 950s Return code: 0 950s OKs: 1 950s Standard out: 950s OK 953s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 953s 139 953s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 953s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/superpose.py" [FAIL] 2.7s 953s Time: 2.66 953s Return code: 139 953s OKs: 0 953s Standard error: 953s Segmentation fault (core dumped) 956s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 956s 139 956s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 956s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/spe.py" [FAIL] 2.7s 956s Time: 2.69 956s Return code: 139 956s OKs: 0 956s Standard error: 956s Segmentation fault (core dumped) 958s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py" [OK] 20.3s 958s Time: 20.35 958s Return code: 0 958s OKs: 1 958s Standard out: 958s data_size = 1000 n_repeats = 30000 958s use_pointers = False 958s use_iterators = 0 time = 0.77 s overhead = 0.00 s (d[p[i]] -1.7053e-08) 958s use_iterators = 1 time = 0.34 s overhead = 0.00 s (d[*p++] -1.7053e-08) 958s use_pointers = True 958s use_iterators = 0 time = 0.26 s overhead = 0.00 s (*dp[i] -1.7053e-08) 958s use_iterators = 1 time = 0.71 s overhead = 0.00 s (**dpi++ -1.7053e-08) 958s use_iterators = 2 time = 0.10 s overhead = 0.00 s (**dpp++ -1.7053e-08) 958s data_size = 10000 n_repeats = 3000 958s use_pointers = False 958s use_iterators = 0 time = 0.78 s overhead = 0.00 s (d[p[i]] -4.09265e-08) 958s use_iterators = 1 time = 0.35 s overhead = 0.00 s (d[*p++] -4.09265e-08) 958s use_pointers = True 958s use_iterators = 0 time = 0.26 s overhead = 0.00 s (*dp[i] -4.09265e-08) 958s use_iterators = 1 time = 0.73 s overhead = 0.00 s (**dpi++ -4.09265e-08) 958s use_iterators = 2 time = 0.10 s overhead = 0.00 s (**dpp++ -4.09265e-08) 958s data_size = 100000 n_repeats = 300 958s use_pointers = False 958s use_iterators = 0 time = 0.78 s overhead = 0.00 s (d[p[i]] 1.78987e-07) 958s use_iterators = 1 time = 0.35 s overhead = 0.00 s (d[*p++] 1.78987e-07) 958s use_pointers = True 958s use_iterators = 0 time = 0.27 s overhead = 0.00 s (*dp[i] 1.78987e-07) 958s use_iterators = 1 time = 0.72 s overhead = 0.00 s (**dpi++ 1.78987e-07) 958s use_iterators = 2 time = 0.10 s overhead = 0.00 s (**dpp++ 1.78987e-07) 958s data_size = 1000000 n_repeats = 30 958s use_pointers = False 958s use_iterators = 0 time = 0.81 s overhead = 0.02 s (d[p[i]] -2.47909e-07) 958s use_iterators = 1 time = 0.36 s overhead = 0.02 s (d[*p++] -2.47909e-07) 958s use_pointers = True 958s use_iterators = 0 time = 0.30 s overhead = 0.02 s (*dp[i] -2.47909e-07) 958s use_iterators = 1 time = 0.79 s overhead = 0.02 s (**dpi++ -2.47909e-07) 958s use_iterators = 2 time = 0.15 s overhead = 0.02 s (**dpp++ -2.47909e-07) 958s data_size = 10000000 n_repeats = 3 958s use_pointers = False 958s use_iterators = 0 time = 2.25 s overhead = 0.26 s (d[p[i]] 1.99725e-06) 958s use_iterators = 1 time = 1.22 s overhead = 0.25 s (d[*p++] 1.99725e-06) 958s use_pointers = True 958s use_iterators = 0 time = 1.18 s overhead = 0.26 s (*dp[i] 1.99725e-06) 958s use_iterators = 1 time = 2.49 s overhead = 0.25 s (**dpi++ 1.99725e-06) 958s use_iterators = 2 time = 0.61 s overhead = 0.25 s (**dpp++ 1.99725e-06) 958s OK 960s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 960s 139 960s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 960s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/incremental_SO3_sampling.py" [FAIL] 4.3s 960s Time: 4.25 960s Return code: 139 960s OKs: 0 960s Standard error: 960s Segmentation fault (core dumped) 963s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 963s 139 963s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 963s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_curve_fitting.py" [FAIL] 5.0s 963s Time: 4.95 963s Return code: 139 963s OKs: 0 963s Standard error: 963s Segmentation fault (core dumped) 963s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_similarity_indices.py" [OK] 0.1s 963s Time: 0.15 963s Return code: 0 963s OKs: 1 963s Standard out: 963s OK 965s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 965s 139 965s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 965s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_weighted_correlation.py" [FAIL] 5.5s 965s Time: 5.53 965s Return code: 139 965s OKs: 0 965s Standard error: 965s Segmentation fault (core dumped) 966s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_fit_quadratic_function.py" [OK] 0.2s 966s Time: 0.23 966s Return code: 0 966s OKs: 1 966s Standard out: 966s OK 966s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gcd.py" [OK] 0.8s 966s Time: 0.77 966s Return code: 0 966s OKs: 1 966s Standard out: 966s compare_with_boost_rational_gcd(gcd_int_simple) 966s compare_with_boost_rational_gcd(gcd_long_simple) 966s compare_with_boost_rational_gcd(gcd_long_binary) 966s gcd_int_boost 999 w=0.06 u+s=0.07 966s gcd_int_simple 999 w=0.03 u+s=0.04 966s gcd_long_boost 999 w=0.06 u+s=0.05 966s gcd_long_simple 999 w=0.03 u+s=0.04 966s gcd_unsigned_long_binary 999 w=0.14 u+s=0.13 966s gcd_long_binary 999 w=0.14 u+s=0.14 966s OK 968s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 968s 139 968s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 968s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_exp_functions.py" [FAIL] 5.3s 968s Time: 5.29 968s Return code: 139 968s OKs: 0 968s Standard error: 968s Segmentation fault (core dumped) 971s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 971s 139 971s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 971s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_math.py" [FAIL] 4.6s 971s Time: 4.61 971s Return code: 139 971s OKs: 0 971s Standard error: 971s Segmentation fault (core dumped) 972s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_r3_rotation.py" [OK] 4.2s 972s Time: 4.19 972s Return code: 0 972s OKs: 0 972s Standard out: 972s times unit quaternion <-> matrix 972s py: 0.05 0.03 s 972s c++: 0.08 0.08 s 972s ratio: 0.64 0.41 972s u+s,u,s: 4.14 4.13 0.01 973s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_line_search.py" [OK] 0.2s 973s Time: 0.17 973s Return code: 0 973s OKs: 1 973s Standard out: 973s OK 974s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 974s 139 974s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 974s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_resample.py" [FAIL] 2.7s 974s Time: 2.69 974s Return code: 139 974s OKs: 0 974s Standard error: 974s Segmentation fault (core dumped) 976s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 976s 139 976s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 976s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gaussian.py" [FAIL] 3.8s 976s Time: 3.76 976s Return code: 139 976s OKs: 0 976s Standard error: 976s Segmentation fault (core dumped) 977s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_bessel.py" [OK] 0.2s 977s Time: 0.19 977s Return code: 0 977s OKs: 0 979s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 979s 139 979s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 979s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_quadrature.py" [FAIL] 5.3s 979s Time: 5.27 979s Return code: 139 979s OKs: 0 979s Standard error: 979s Segmentation fault (core dumped) 980s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_euler_angles.py" [OK] 1.1s 980s Time: 1.12 980s Return code: 0 980s OKs: 0 980s Standard out: 980s u+s,u,s: 1.09 1.09 0.00 980s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_superpose.py" [OK] 0.3s 980s Time: 0.27 980s Return code: 0 980s OKs: 1 980s Standard out: 980s OK 981s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_uniform_rotation_matrix.py" [OK] 0.2s 981s Time: 0.20 981s Return code: 0 981s OKs: 1 981s Standard out: 981s OK 982s Standard error: 982s Segmentation fault (core dumped) 982s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 982s 139 982s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 982s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_halton.py" [FAIL] 5.2s 982s Time: 5.20 982s Return code: 139 982s OKs: 0 982s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_zernike_mom.py" [OK] 0.2s 982s Time: 0.19 982s Return code: 0 982s OKs: 1 982s Standard out: 982s OK 982s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/sieve_of_eratosthenes.py" [OK] 0.0s 982s Time: 0.03 982s Return code: 0 982s OKs: 1 982s Standard out: 982s OK 982s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/besselk.py" [OK] 0.0s 982s Time: 0.03 982s Return code: 0 982s OKs: 1 982s Standard out: 982s OK 985s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 985s 139 985s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 985s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/scale_curves.py" [FAIL] 3.0s 985s Time: 3.04 985s Return code: 139 985s OKs: 0 985s Standard error: 985s Segmentation fault (core dumped) 988s Standard error: 988s Segmentation fault (core dumped) 988s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 988s 139 988s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 988s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_fit_peak.py" [FAIL] 2.9s 988s Time: 2.90 988s Return code: 139 988s OKs: 0 991s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 991s 139 991s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 991s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_clustering.py" [FAIL] 2.6s 991s Time: 2.63 991s Return code: 139 991s OKs: 0 991s Standard error: 991s Segmentation fault (core dumped) 991s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_orthonormal_basis.py" [OK] 0.2s 991s Time: 0.18 991s Return code: 0 991s OKs: 1 991s Standard out: 991s OK 991s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_g_function.py" [OK] 0.2s 991s Time: 0.18 991s Return code: 0 991s OKs: 0 991s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_angle_derivative.py" [OK] 0.2s 991s Time: 0.19 991s Return code: 0 991s OKs: 1 991s Standard out: 991s OK 995s Standard error: 995s Segmentation fault (core dumped) 995s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 995s 139 995s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 995s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_zernike.py" [FAIL] 14.0s 995s Time: 13.96 995s Return code: 139 995s OKs: 0 997s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 997s 139 997s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 997s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_periodogram.py" [FAIL] 6.1s 997s Time: 6.06 997s Return code: 139 997s OKs: 0 997s Standard error: 997s Segmentation fault (core dumped) 997s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_tetrahedron.py" [OK] 0.2s 997s Time: 0.22 997s Return code: 0 997s OKs: 1 997s Standard out: 997s OK 998s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_undirected_graph.py" [OK] 0.2s 998s Time: 0.17 998s Return code: 0 998s OKs: 0 998s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_so3_lie_algebra.py" [OK] 0.2s 998s Time: 0.17 998s Return code: 0 998s OKs: 0 998s libtbx.python "/usr/lib/python3/dist-packages/scitbx/minpack/tst.py" [OK] 0.2s 998s Time: 0.16 998s Return code: 0 998s OKs: 1 998s Standard out: 998s OK 998s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_ext.py" [OK] 0.2s 998s Time: 0.15 998s Return code: 0 998s OKs: 1 998s Standard out: 998s OK 1000s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1000s 139 1000s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1000s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_error_propagation_matrix_inverse.py" [FAIL] 5.3s 1000s Time: 5.33 1000s Return code: 139 1000s OKs: 0 1000s Standard error: 1000s Segmentation fault (core dumped) 1003s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1003s 139 1003s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1003s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_curvatures.py" [FAIL] 4.6s 1003s Time: 4.65 1003s Return code: 139 1003s OKs: 0 1003s Standard error: 1003s Segmentation fault (core dumped) 1003s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_func_free_line_search.py" [OK] 0.2s 1003s Time: 0.18 1003s Return code: 0 1003s OKs: 1 1003s Standard out: 1003s The answer is: [2, -5, 500] 1003s The start value is: [-100, 203, 999] 1003s scitbx.lbfgs: use gradient_only line search: True 1003s scitbx.lbfgs: use gradient_only line search: False 1003s OK 1003s "/usr/lib/cctbx/python3.13/scitbx/lbfgs/tst_lbfgs" [OK] 0.0s 1003s Time: 0.00 1003s Return code: 0 1003s OKs: 0 1003s Standard out: 1003s n: 100 1003s m: 5 1003s xtol: 1e-16 1003s f: 254.065 gnorm: 325.365 1003s 1 2 0.000607303 1003s f: 207.819 gnorm: 54.5204 1003s 2 3 1 1003s f: 206.329 gnorm: 12.6873 1003s 3 4 1 1003s f: 206.158 gnorm: 12.9705 1003s 4 5 1 1003s f: 204.568 gnorm: 36.0649 1003s 5 6 1 1003s f: 201.009 gnorm: 69.9702 1003s 6 7 1 1003s f: 132.076 gnorm: 99.1014 1003s 7 11 2.30835 1003s f: 131.557 gnorm: 80.1033 1003s 8 13 0.152436 1003s f: 120.196 gnorm: 66.244 1003s 9 15 5 1003s f: 105.948 gnorm: 116.627 1003s 10 16 1 1003s f: 87.4002 gnorm: 17.1325 1003s 11 17 1 1003s f: 72.7773 gnorm: 32.6968 1003s 12 18 1 1003s f: 67.7306 gnorm: 49.5851 1003s 13 20 0.213662 1003s f: 60.0913 gnorm: 52.8678 1003s 14 21 1 1003s f: 45.9493 gnorm: 28.0796 1003s 15 22 1 1003s f: 37.3669 gnorm: 39.3487 1003s 16 23 1 1003s f: 23.0492 gnorm: 14.5867 1003s 17 24 1 1003s f: 19.8468 gnorm: 17.9762 1003s 18 26 0.156708 1003s f: 17.6677 gnorm: 48.6045 1003s 19 27 1 1003s f: 13.9465 gnorm: 22.2498 1003s 20 28 1 1003s f: 9.11604 gnorm: 28.0105 1003s 21 29 1 1003s f: 5.82159 gnorm: 10.2151 1003s 22 30 1 1003s f: 4.75971 gnorm: 28.511 1003s 23 32 0.436181 1003s f: 2.35807 gnorm: 22.65 1003s 24 33 1 1003s f: 1.55734 gnorm: 15.4752 1003s 25 34 1 1003s f: 0.810498 gnorm: 2.3865 1003s 26 36 0.404632 1003s f: 0.508703 gnorm: 9.94499 1003s 27 38 0.247512 1003s f: 0.363447 gnorm: 15.2129 1003s 28 39 1 1003s f: 0.167247 gnorm: 9.7728 1003s 29 40 1 1003s f: 0.0372373 gnorm: 1.32586 1003s 30 41 1 1003s f: 0.0098316 gnorm: 4.14194 1003s 31 42 1 1003s f: 0.000471098 gnorm: 0.567595 1003s 32 43 1 1003s f: 3.2788e-06 gnorm: 0.027547 1003s 33 44 1 1003s f: 2.34044e-08 gnorm: 0.00607363 1003s 34 45 1 1003s f: 2.09469e-13 gnorm: 1.31535e-05 1003s 35 46 1 1006s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1006s 139 1006s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1006s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgsb/boost_python/tst_lbfgsb.py" [FAIL] 3.0s 1006s Time: 2.95 1006s Return code: 139 1006s OKs: 0 1006s Standard error: 1006s Segmentation fault (core dumped) 1009s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1009s 139 1009s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1009s libtbx.python "/usr/lib/python3/dist-packages/scitbx/fftpack/boost_python/tst_fftpack.py" [FAIL] 3.0s 1009s Time: 3.00 1009s Return code: 139 1009s OKs: 0 1009s Standard error: 1009s Segmentation fault (core dumped) 1010s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" [OK] 10.3s 1010s Time: 10.34 1010s Return code: 0 1010s OKs: 1 1010s Standard out: 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 2 5 -1 0 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 2 5 -1 0 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 2 5 -1 0 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 100 4 -1 1 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 100 4 -1 1 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 100 4 -1 1 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 2 5 -1 2 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 2 5 -1 2 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 2 5 -1 2 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 4 5 -1 3 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 4 5 -1 3 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 4 5 -1 3 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 4 6 0 0 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 4 6 0 0 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 4 6 0 0 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 14 6 0 1 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 14 6 0 1 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 14 6 0 1 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 14 4 0 2 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 14 4 0 2 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 14 4 0 2 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 14 2 0 3 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 14 2 0 3 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 14 2 0 3 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 4 6 1 0 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 4 6 1 0 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 4 6 1 0 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 14 4 1 1 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 14 4 1 1 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 14 4 1 1 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 100 7 1 2 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 100 7 1 2 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 100 7 1 2 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 100 7 1 3 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 100 7 1 3 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 100 7 1 3 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 4 5 2 0 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 4 5 2 0 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 4 5 2 0 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 100 4 2 1 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 100 4 2 1 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 100 4 2 1 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 2 4 2 2 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 2 4 2 2 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 2 4 2 2 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 14 6 2 3 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 14 6 2 3 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 14 6 2 3 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 2 5 3 0 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 2 5 3 0 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 2 5 3 0 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 4 2 3 1 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 4 2 3 1 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 4 2 3 1 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 100 2 3 2 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 100 2 3 2 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 100 2 3 2 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" fortran 2 7 3 3 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw_reference 2 7 3 3 1010s scitbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py" raw 2 7 3 3 1010s usr+sys time: 0.34 seconds 1010s wall clock time: 10.17 seconds 1010s OK 1010s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/flex_array_loops.py" [OK] 0.1s 1010s Time: 0.14 1010s Return code: 0 1010s OKs: 1 1010s Standard out: 1010s 10.0 1010s 11.0 1010s 12.0 1010s 1010s 10.0 1010s 11.0 1010s 12.0 1010s 1010s 0 10.0 1010s 1 11.0 1010s 2 12.0 1010s 1010s 100.0 1010s 110.0 1010s 120.0 1010s 1010s 200.0 1010s 210.0 1010s 220.0 1010s 1010s OK 1011s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/principal_axes_of_inertia.py" [OK] 0.2s 1011s Time: 0.15 1011s Return code: 0 1011s OKs: 0 1011s Standard out: 1011s (7.796692307692308, 1.365076923076923, 8.357692307692307) 1011s (38.140037692307715, 97.02526753846156, 79.0222196923077, -19.808558307692305, 35.14258523076924, 7.6620366923076935) 1011s [104.22746487361265, 97.26642591377534, 12.693634135689015] 1011s [-0.43905397167468396, 0.8222124337102901, -0.36221309171382476, 0.3037216796237081, 0.5152398514117881, 0.8014243799908461, 0.8455677094610694, 0.24185658843488295, -0.4759418445014057] 1011s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/lbfgs_recipe.py" [OK] 0.1s 1011s Time: 0.14 1011s Return code: 0 1011s OKs: 1 1011s Standard out: 1011s refinery 1011s compute_functional_and_gradients 1011s callback_after_step 1011s OK 1012s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1012s 139 1012s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1012s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/flex_grid.py" [FAIL] 2.7s 1012s Time: 2.73 1012s Return code: 139 1012s OKs: 0 1012s Standard error: 1012s Segmentation fault (core dumped) 1014s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1014s 139 1014s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1014s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/lbfgs_linear_least_squares_fit.py" [FAIL] 3.3s 1014s Standard error: 1014s Segmentation fault (core dumped) 1014s Time: 3.35 1014s Return code: 139 1014s OKs: 0 1017s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1017s 139 1017s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1017s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/chebyshev_lsq_example.py" [FAIL] 5.2s 1017s Time: 5.20 1017s Return code: 139 1017s OKs: 0 1017s Standard error: 1017s Segmentation fault (core dumped) 1017s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/rigid_body_refinement_core.py" [OK] 0.1s 1017s Time: 0.15 1017s Return code: 0 1017s OKs: 1 1017s Standard out: 1017s an ea: [0.0, 0.0, 0.0] 1017s fd ea: [2.9856131013692537e-15, 8.482502921596884e-16, 3.956636706594845e-15] 1017s an lt: [-0.0, -0.0, -0.0] 1017s fd lt: [0.0, 0.0, 0.0] 1017s 1017s an ea: [1.4293798315070272, -4.7699199336056015, -3.2848275925325994] 1017s fd ea: [1.4293798322739804, -4.769919932368083, -3.284827593041939] 1017s an lt: [-2.6395370381698946, 3.8546779254822816, -3.7648774634679576] 1017s fd lt: [-2.6395370364973303, 3.8546779261849906, -3.764877463563465] 1017s 1017s an ea: [-4.386454471339835, 2.1848899436111178, 5.0802158076235635] 1017s fd ea: [-4.386454468985335, 2.184889945411328, 5.080215810693289] 1017s an lt: [-4.688132824683539, -10.874759921610867, -1.9393316543209416] 1017s fd lt: [-4.688132825947378, -10.874759922785415, -1.939331655265164] 1017s 1017s an ea: [-5.097458993694191, 2.0225151159319297, 4.479103261227751] 1017s fd ea: [-5.097458993574833, 2.0225151207142744, 4.479103258958617] 1017s an lt: [-2.8154365578392593, -5.157085781215166, -17.014046644874668] 1017s fd lt: [-2.8154365576682494, -5.157085780638226, -17.014046648000658] 1017s 1017s OK 1020s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1020s 139 1020s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1020s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/immoptibox_ports.py" [FAIL] 5.7s 1020s Time: 5.66 1020s Return code: 139 1020s OKs: 0 1020s Standard error: 1020s Segmentation fault (core dumped) 1023s Standard error: 1023s Segmentation fault (core dumped) 1023s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1023s 139 1023s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1023s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/integrating_a_weighted_sinc_function.py" [FAIL] 5.9s 1023s Time: 5.93 1023s Return code: 139 1023s OKs: 0 1023s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_utils.py" [OK] 0.0s 1023s Time: 0.04 1023s Return code: 0 1023s OKs: 1 1023s Standard out: 1023s OK 1023s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/rigidity.py" [OK] 0.0s 1023s Time: 0.03 1023s Return code: 0 1023s OKs: 0 1023s Standard out: 1023s double banana 3D dof (method=integer): 7 1023s double banana 3D dof (method=float): 7 1023s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_rigidity.py" [OK] 0.3s 1023s Time: 0.28 1023s Return code: 0 1023s OKs: 0 1023s Standard out: 1023s repeat_log = {0: 85} 1023s u+s,u,s: 0.26 0.26 0.00 1024s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/rigidity_matrix_symbolic.py" [OK] 0.3s 1024s Time: 0.32 1024s Return code: 0 1024s OKs: 0 1024s Standard out: 1024s u+s,u,s: 0.30 0.30 0.00 1025s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1025s 139 1025s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1025s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/minimizer_comparisons.py" [FAIL] 5.7s 1025s Time: 5.73 1025s Return code: 139 1025s OKs: 0 1025s Standard error: 1025s Segmentation fault (core dumped) 1026s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_tardy_tree_find_paths.py" [OK] 2.7s 1026s Time: 2.71 1026s Return code: 0 1026s OKs: 1 1026s Standard out: 1026s OK 1026s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/test_cases_tardy_pdb.py" [OK] 0.1s 1026s Time: 0.05 1026s Return code: 0 1026s OKs: 0 1029s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1029s 139 1029s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1029s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_tardy_tree.py" [FAIL] 3.2s 1029s Time: 3.19 1029s Return code: 139 1029s OKs: 0 1029s Standard error: 1029s Segmentation fault (core dumped) 1031s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1031s 139 1031s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1031s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_basic.py" [FAIL] 4.8s 1031s Time: 4.85 1031s Return code: 139 1031s OKs: 0 1031s Standard error: 1031s Segmentation fault (core dumped) 1034s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1034s 139 1034s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1034s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_tardy.py" [FAIL] 5.2s 1034s Time: 5.21 1034s Return code: 139 1034s OKs: 0 1034s Standard error: 1034s Segmentation fault (core dumped) 1036s Standard error: 1036s Segmentation fault (core dumped) 1036s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1036s 139 1036s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1036s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_energy_plots.py" [FAIL] 5.3s 1036s Time: 5.34 1036s Return code: 139 1036s OKs: 0 1036s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/free_motion_reference_impl.py" [OK] 0.0s 1036s Time: 0.04 1036s Return code: 0 1036s OKs: 1 1036s Standard out: 1036s e_kin tot ang lin: 0.04066059413038476 0.012310594130384761 0.02835 1036s e_pot: 0.6403087877704161 1036s e_tot: 0.6809693819008009 1036s ang acc 3D: (0.4499405243671747, -0.22736369685250066, -0.6859763000328927) 1036s lin acc 3D: (0.2108121283092794, 0.3044814367238479, -0.7824311428947446) 1036s 1036s e_kin tot ang lin: 0.043334386720177365 0.012335145793951681 0.030999240926225684 1036s e_pot: 0.6375204431681878 1036s e_tot: 0.6808548298883652 1036s ang acc 3D: (0.4491523283824315, -0.2233952828755118, -0.688364609039924) 1036s lin acc 3D: (0.2063305410676703, 0.3022012812609254, -0.7827791077048256) 1036s 1036s e_kin tot ang lin: 0.04624491637806352 0.012390841212545118 0.0338540751655184 1036s e_pot: 0.6344966498401754 1036s e_tot: 0.6807415662182389 1036s ang acc 3D: (0.4482905223840879, -0.2193464063160701, -0.6906197519803725) 1036s lin acc 3D: (0.20168867739512958, 0.299808900299363, -0.7830079270607541) 1036s 1036s e_kin tot ang lin: 0.049389854602061224 0.01247763222642335 0.036912222375637876 1036s e_pot: 0.6312398275384674 1036s e_tot: 0.6806296821405287 1036s ang acc 3D: (0.44735466644443667, -0.21521902126722914, -0.692740958483326) 1036s lin acc 3D: (0.19688964121862268, 0.29730414639378616, -0.7831155604559972) 1036s 1036s e_kin tot ang lin: 0.05276668787891577 0.012595448079626585 0.04017123979928919 1036s e_pot: 0.6277525800757479 1036s e_tot: 0.6805192679546637 1036s ang acc 3D: (0.4463443200247767, -0.2110151239756078, -0.694727476553102) 1036s lin acc 3D: (0.1919366941490876, 0.29468687861617315, -0.783099948460292) 1036s 1036s e_kin tot ang lin: 0.05637271969939971 0.012744195480724368 0.043628524218675344 1036s e_pot: 0.6240376932449352 1036s e_tot: 0.6804104129443349 1036s ang acc 3D: (0.4452590426839754, -0.2067367517215091, -0.6965785731789051) 1036s lin acc 3D: (0.18683325327725137, 0.29195696483157874, -0.7829590159403469) 1036s 1036s e_kin tot ang lin: 0.060205072713709167 0.012923758676161239 0.04728131403754793 1036s e_pot: 0.6200981325993219 1036s e_tot: 0.680303205313031 1036s ang acc 3D: (0.44409839480429714, -0.20238598167333133, -0.6982935349568492) 1036s lin acc 3D: (0.18158288880693388, 0.2891142841060344, -0.7826906753299725) 1036s 1036s e_kin tot ang lin: 0.06426069102522652 0.013133999536143382 0.051126691489083144 1036s e_pot: 0.6159370410950341 1036s e_tot: 0.6801977321202606 1036s ang acc 3D: (0.4428619383337592, -0.1979649297164907, -0.6998716687235316) 1036s lin acc 3D: (0.17618932152521946, 0.2861587292410898, -0.7822928299444691) 1036s 1036s e_kin tot ang lin: 0.06853634262082685 0.013374757653013635 0.05516158496781321 1036s e_pot: 0.6115577365976127 1036s e_tot: 0.6800940792184396 1036s ang acc 3D: (0.4415492375442347, -0.1934757492571058, -0.7013123022002559) 1036s lin acc 3D: (0.17065642010895676, 0.2830902094290727, -0.7817633773339945) 1036s 1036s e_kin tot ang lin: 0.07302862193581516 0.013645850452066947 0.059382771483748216 1036s e_pot: 0.6069637092547071 1036s e_tot: 0.6799923311905223 1036s ang acc 3D: (0.44015985980451133, -0.18892063000069204, -0.702614784647033) 1036s lin acc 3D: (0.16498819826718966, 0.2799086530227533, -0.7811002126706817) 1036s 1036s OK 1039s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1039s 139 1039s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1039s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/tst.py" [FAIL] 5.2s 1039s Time: 5.22 1039s Return code: 139 1039s OKs: 0 1039s Standard error: 1039s Segmentation fault (core dumped) 1042s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1042s 139 1042s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1042s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_featherstone.py" [FAIL] 5.1s 1042s Time: 5.09 1042s Return code: 139 1042s OKs: 0 1042s Standard error: 1042s Segmentation fault (core dumped) 1044s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1044s 139 1044s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1044s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_free_motion.py" [FAIL] 5.1s 1044s Time: 5.11 1044s Return code: 139 1044s OKs: 0 1044s Standard error: 1044s Segmentation fault (core dumped) 1047s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1047s 139 1047s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1047s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_free_motion_hard.py" [FAIL] 5.1s 1047s Time: 5.10 1047s Return code: 139 1047s OKs: 0 1047s Standard error: 1047s Segmentation fault (core dumped) 1049s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1049s 139 1049s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1049s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_joint_lib.py" [FAIL] 5.1s 1049s Time: 5.08 1049s Return code: 139 1049s OKs: 0 1049s Standard error: 1049s Segmentation fault (core dumped) 1050s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_spherical_refinement.py" [OK] 0.4s 1050s Time: 0.36 1050s Return code: 0 1050s OKs: 1 1050s Standard out: 1050s OK 1050s usr+sys time: 0.33 seconds 1050s wall clock time: 0.33 seconds 1052s Standard error: 1052s Segmentation fault (core dumped) 1052s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1052s 139 1052s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1052s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_singular.py" [FAIL] 5.1s 1052s Time: 5.14 1052s Return code: 139 1052s OKs: 0 1055s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1055s 139 1055s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1055s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_molecules.py" [FAIL] 5.0s 1055s Time: 4.99 1055s Return code: 139 1055s OKs: 0 1055s Standard error: 1055s Segmentation fault (core dumped) 1057s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1057s 139 1057s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1057s libtbx.python "/usr/lib/python3/dist-packages/scitbx/sparse/tests/tst_sparse.py" [FAIL] 5.3s 1057s Time: 5.26 1057s Return code: 139 1057s OKs: 0 1057s Standard error: 1057s Segmentation fault (core dumped) 1060s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1060s 139 1060s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1060s libtbx.python "/usr/lib/python3/dist-packages/scitbx/sparse/tests/tst_lu_factorization.py" [FAIL] 5.1s 1060s Standard error: 1060s Segmentation fault (core dumped) 1060s Time: 5.15 1060s Return code: 139 1060s OKs: 0 1062s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1062s 139 1062s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1062s libtbx.python "/usr/lib/python3/dist-packages/scitbx/iso_surface/tst_iso_surface.py" [FAIL] 5.2s 1062s Time: 5.16 1062s Return code: 139 1062s OKs: 0 1062s Standard error: 1062s Segmentation fault (core dumped) 1065s Standard error: 1065s Segmentation fault (core dumped) 1065s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1065s 139 1065s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1065s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/simplex.py" [FAIL] 5.2s 1065s Time: 5.19 1065s Return code: 139 1065s OKs: 0 1065s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/golden_section_search.py" [OK] 0.0s 1065s Time: 0.03 1065s Return code: 0 1065s OKs: 0 1067s Standard error: 1067s Segmentation fault (core dumped) 1067s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1067s 139 1067s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1067s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/differential_evolution.py" [FAIL] 5.1s 1067s Time: 5.11 1067s Return code: 139 1067s OKs: 0 1070s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1070s 139 1070s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1070s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/direct_search_simulated_annealing.py" [FAIL] 4.9s 1070s Time: 4.92 1070s Return code: 139 1070s OKs: 0 1070s Standard error: 1070s Segmentation fault (core dumped) 1073s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1073s 139 1073s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1073s libtbx.python "/usr/lib/python3/dist-packages/scitbx/random/tests/tst_random.py" [FAIL] 5.9s 1073s Time: 5.88 1073s Return code: 139 1073s OKs: 0 1073s Standard error: 1073s Segmentation fault (core dumped) 1073s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lstbx/tests/test_problems.py" [OK] 0.2s 1073s Time: 0.17 1073s Return code: 0 1073s OKs: 0 1074s libtbx.python "/usr/lib/python3/dist-packages/scitbx/glmtbx/tests/tst.py" [OK] 0.4s 1074s Time: 0.38 1074s Return code: 0 1074s OKs: 2 1074s Standard out: 1074s OK 1074s OK 1076s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1076s 139 1076s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1076s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lstbx/tests/tst_normal_equations.py" [FAIL] 6.0s 1076s Time: 5.95 1076s Return code: 139 1076s OKs: 0 1076s Standard error: 1076s Segmentation fault (core dumped) 1078s Standard error: 1078s Segmentation fault (core dumped) 1078s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1078s 139 1078s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1078s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_basic.py" [FAIL] 4.4s 1078s Time: 4.42 1078s Return code: 139 1078s OKs: 0 1081s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1081s 139 1081s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1081s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_booth.py" [FAIL] 4.8s 1081s Time: 4.84 1081s Return code: 139 1081s OKs: 0 1081s Standard error: 1081s Segmentation fault (core dumped) 1081s libtbx.python "/usr/lib/python3/dist-packages/scitbx/suffixtree/test/tst_single.py" [OK] 0.1s 1081s Time: 0.08 1081s Return code: 0 1081s OKs: 0 1083s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1083s 139 1083s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1083s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_twisted.py" [FAIL] 5.1s 1083s Time: 5.06 1083s Return code: 139 1083s OKs: 0 1083s Standard error: 1083s Segmentation fault (core dumped) 1086s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1086s 139 1086s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1086s libtbx.python "/usr/lib/python3/dist-packages/smtbx/absolute_structure/tests/tst_absolute_structure.py" --fix_random_seeds [FAIL] 5.7s 1086s Time: 5.72 1086s Return code: 139 1086s OKs: 0 1086s Standard error: 1086s Segmentation fault (core dumped) 1089s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1089s 139 1089s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1089s libtbx.python "/usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py" [FAIL] 6.1s 1089s Time: 6.13 1089s Return code: 139 1089s OKs: 0 1089s Standard error: 1089s Segmentation fault (core dumped) 1092s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1092s 139 1092s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1092s libtbx.python "/usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py" --fix_seed --on=E "hall: P 1" "hall: P 3" "hall: -P 2ybc" [FAIL] 6.0s 1092s Time: 5.97 1092s Return code: 139 1092s OKs: 0 1092s Standard error: 1092s Segmentation fault (core dumped) 1096s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1096s 139 1096s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1096s libtbx.python "/usr/lib/python3/dist-packages/smtbx/masks/tests/tst_masks.py" [FAIL] 6.4s 1096s Time: 6.40 1096s Return code: 139 1096s OKs: 0 1096s Standard error: 1096s Segmentation fault (core dumped) 1099s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1099s 139 1099s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1099s libtbx.python "/usr/lib/python3/dist-packages/smtbx/structure_factors/direct/tests/tst_standard_xray.py" [FAIL] 6.6s 1099s Time: 6.60 1099s Return code: 139 1099s OKs: 0 1099s Standard error: 1099s Segmentation fault (core dumped) 1102s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1102s 139 1102s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1102s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/tests/tst_weighting_schemes.py" --fix_random_seeds [FAIL] 6.3s 1102s Time: 6.29 1102s Return code: 139 1102s OKs: 0 1102s Standard error: 1102s Segmentation fault (core dumped) 1102s "/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_reparametrisation" [OK] 0.0s 1102s Time: 0.01 1102s Return code: 0 1102s OKs: 1 1102s Standard out: 1102s sizeof(parameter) = 32 1102s OK 1105s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1105s 139 1105s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1105s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py" [FAIL] 6.1s 1105s Time: 6.12 1105s Return code: 139 1105s OKs: 0 1105s Standard error: 1105s Segmentation fault (core dumped) 1105s "/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens" [OK] 0.0s 1105s Time: 0.01 1105s Return code: 0 1105s OKs: 1 1105s Standard out: 1105s OK 1109s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1109s 139 1109s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1109s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_occupancies.py" [FAIL] 6.4s 1109s Time: 6.43 1109s Return code: 139 1109s OKs: 0 1109s Standard error: 1109s Segmentation fault (core dumped) 1109s "/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_special_position" [OK] 0.0s 1109s Time: 0.01 1109s Return code: 0 1109s OKs: 1 1109s Standard out: 1109s OK 1112s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1112s 139 1112s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1112s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_same_group.py" [FAIL] 6.4s 1112s Standard error: 1112s Segmentation fault (core dumped) 1112s Time: 6.37 1112s Return code: 139 1112s OKs: 0 1115s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1115s 139 1115s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1115s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py" [FAIL] 6.2s 1115s Time: 6.18 1115s Return code: 139 1115s OKs: 0 1115s Standard error: 1115s Segmentation fault (core dumped) 1118s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1118s 139 1118s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1118s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py" --normal_eqns_solving_method=naive [FAIL] 6.4s 1118s Standard error: 1118s Segmentation fault (core dumped) 1118s Time: 6.39 1118s Return code: 139 1118s OKs: 0 1121s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1121s 139 1121s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1121s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_disorder.py" [FAIL] 6.4s 1121s Time: 6.41 1121s Return code: 139 1121s OKs: 0 1121s Standard error: 1121s Segmentation fault (core dumped) 1121s Standard error: 1121s Segmentation fault (core dumped) 1121s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1121s 139 1121s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1121s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py" --normal_eqns_solving_method=levenberg-marquardt [FAIL] 3.3s 1121s Time: 3.27 1121s Return code: 139 1121s OKs: 0 1124s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1124s 139 1124s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1124s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_direction.py" [FAIL] 3.3s 1124s Time: 3.30 1124s Return code: 139 1124s OKs: 0 1124s Standard error: 1124s Segmentation fault (core dumped) 1128s Standard error: 1128s Segmentation fault (core dumped) 1128s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1128s 139 1128s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1128s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_rigid.py" [FAIL] 6.3s 1128s Time: 6.34 1128s Return code: 139 1128s OKs: 0 1131s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1131s 139 1131s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1131s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_adp_restraints.py" [FAIL] 6.1s 1131s Time: 6.14 1131s Return code: 139 1131s OKs: 0 1131s Standard error: 1131s Segmentation fault (core dumped) 1134s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1134s 139 1134s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1134s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_manager.py" [FAIL] 6.1s 1134s Time: 6.15 1134s Return code: 139 1134s OKs: 0 1134s Standard error: 1134s Segmentation fault (core dumped) 1137s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1137s 139 1137s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1137s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_restraints.py" --verbose --scatterers=5 --resolution=0.2 [FAIL] 6.2s 1137s Time: 6.19 1137s Return code: 139 1137s OKs: 0 1137s Standard error: 1137s Segmentation fault (core dumped) 1140s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1140s 139 1140s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1140s libtbx.python "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_refine.py" [FAIL] 6.5s 1140s Time: 6.47 1140s Return code: 139 1140s OKs: 0 1140s Standard error: 1140s Segmentation fault (core dumped) 1146s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1146s 1 1146s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1146s libtbx.python "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_anomrefine.py" [FAIL] 8.7s 1146s Time: 8.74 1146s Return code: 1 1146s OKs: 0 1146s Standard out: 1146s smtbx.anom_refine /usr/lib/python3/dist-packages/smtbx/regression/test_data/thpp.cif /usr/lib/python3/dist-packages/smtbx/regression/test_data/thpp.hkl F -e13000 -t -O -d0 -s0 -c25 1146s Standard error: 1146s Traceback (most recent call last): 1146s File "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_anomrefine.py", line 37, in 1146s run() 1146s ~~~^^ 1146s File "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_anomrefine.py", line 27, in run 1146s run_buf.raise_if_errors() 1146s ~~~~~~~~~~~~~~~~~~~~~~~^^ 1146s File "/usr/lib/python3/dist-packages/libtbx/easy_run.py", line 46, in raise_if_errors 1146s raise Error(msg) 1146s RuntimeError: child process stderr output: 1146s command: 'smtbx.anom_refine /usr/lib/python3/dist-packages/smtbx/regression/test_data/thpp.cif /usr/lib/python3/dist-packages/smtbx/regression/test_data/thpp.hkl F -e13000 -t -O -d0 -s0 -c25' 1146s Segmentation fault (core dumped) 1147s Standard error: 1147s Segmentation fault (core dumped) 1147s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1147s 139 1147s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1147s libtbx.python "/usr/lib/python3/dist-packages/smtbx/tests/tst_utils.py" [FAIL] 6.8s 1147s Time: 6.81 1147s Return code: 139 1147s OKs: 0 1150s Standard error: 1150s Segmentation fault (core dumped) 1150s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1150s 139 1150s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1150s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/tests/tst_least_squares.py" [EXPECTED UNSTABLE] 4.4s 1150s Time: 4.40 1150s Return code: 139 1150s OKs: 0 1150s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_predict.py" [OK] 0.2s 1150s Time: 0.23 1150s Return code: 0 1150s OKs: 1 1150s Standard out: 1150s OK 1150s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_ewald_sphere.py" [OK] 0.2s 1150s Time: 0.20 1150s Return code: 0 1150s OKs: 1 1150s Standard out: 1150s OK 1151s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_partial_derivatives.py" [OK] 0.2s 1151s Time: 0.17 1151s Return code: 0 1151s OKs: 1 1151s Standard out: 1151s OK 1153s Standard error: 1153s Segmentation fault (core dumped) 1153s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1153s 139 1153s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1153s libtbx.python "/usr/lib/python3/dist-packages/rstbx/dps_core/tst_iotbx_converter.py" [FAIL] 5.8s 1153s Time: 5.76 1153s Return code: 139 1153s OKs: 0 1156s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1156s 139 1156s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1156s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/fastbragg/tst_bragg_minimal.py" [FAIL] 5.2s 1156s Time: 5.22 1156s Return code: 139 1156s OKs: 0 1156s Standard error: 1156s Segmentation fault (core dumped) 1159s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1159s 139 1159s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1159s libtbx.python "/usr/lib/python3/dist-packages/rstbx/sublattice_support/tst_sublattice.py" [FAIL] 5.9s 1159s Time: 5.92 1159s Return code: 139 1159s OKs: 0 1159s Standard error: 1159s Segmentation fault (core dumped) 1159s libtbx.python "/usr/lib/python3/dist-packages/spotfinder/core_toolbox/boost_python/tst_small_image.py" [OK] 0.5s 1159s Time: 0.48 1159s Return code: 0 1159s OKs: 1 1159s Standard out: 1159s OK 1159s libtbx.python "/usr/lib/python3/dist-packages/spotfinder/diffraction/geometry.py" [OK] 0.2s 1159s Time: 0.17 1159s Return code: 0 1159s OKs: 1 1159s Standard out: 1159s OK 1159s libtbx.python "/usr/lib/python3/dist-packages/spotfinder/math_support/sphere_formulae.py" [OK] 0.0s 1159s Time: 0.03 1159s Return code: 0 1159s OKs: 1 1159s Standard out: 1159s OK 1160s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 1160s 139 1160s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 1160s libtbx.python -c "from rstbx.run_tests import run; run()" [FAIL] 4.5s 1160s Time: 4.46 1160s Return code: 139 1160s OKs: 0 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s ================================================================================ 1160s 1160s Tests finished. Elapsed time: 971.36s 1160s 1160s Distribution of test runtimes: 1160s 0.0s - 5.3s: 327 1160s 5.3s - 10.6s: 214 1160s 10.6s - 15.8s: 2 1160s 15.8s - 21.1s: 1 1160s 21.1s - 26.4s: 1 1160s 26.4s - 31.6s: 0 1160s 31.6s - 36.9s: 0 1160s 36.9s - 42.2s: 0 1160s 42.2s - 47.5s: 0 1160s 47.5s - 52.7s: 1 1160s 1160s 1160s Warning: the following are 5 longest jobs: 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_fetch.py": 52.7s 1160s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_thread_utils.py": 22.3s 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py": 20.3s 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_zernike.py": 14.0s 1160s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_separate_files.py": 13.4s 1160s Please try to reduce overall runtime - consider splitting up these tests. 1160s 1160s 1160s Error: the following jobs returned non-zero exit codes or suspicious stderr output: 1160s 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py" [FAIL] 4.2s 1160s Time: 4.22 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py" [FAIL] 4.6s 1160s Time: 4.65 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_is_periodic.py" [FAIL] 6.4s 1160s Time: 6.35 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_reindexing.py" [FAIL] 6.4s 1160s Time: 6.37 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_data_manipulation.py" [FAIL] 5.9s 1160s Time: 5.86 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_bfgs.py" [FAIL] 6.0s 1160s Time: 5.95 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_dev.py" P31 [FAIL] 6.0s 1160s Time: 5.97 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry/tests/tst_geometry.py" [FAIL] 6.4s 1160s Time: 6.43 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/covariance/tests/tst_covariance.py" [FAIL] 6.2s 1160s Time: 6.23 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_goodness_of_symmetry.py" [FAIL] 6.1s 1160s Time: 6.07 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_from_map.py" P312 [FAIL] 6.3s 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Time: 6.25 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_xray.py" [FAIL] 6.1s 1160s Time: 6.09 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray.py" I41/acd [FAIL] 7.6s 1160s Time: 7.60 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_r1.py" [FAIL] 6.7s 1160s Time: 6.74 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_shelxl_wght_ls.py" [FAIL] 6.1s 1160s Time: 6.10 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_f_model.py" [FAIL] 6.1s 1160s Time: 6.13 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/array_family/boost_python/tst_flex.py" [FAIL] 6.3s 1160s Time: 6.34 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_uctbx.py" [FAIL] 6.4s 1160s Time: 6.40 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_crystal_orientation.py" [FAIL] 6.1s 1160s Time: 6.09 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/boost_python/tst_sgtbx.py" [FAIL] 6.2s 1160s Time: 6.17 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_ext.py" [FAIL] 6.5s 1160s Time: 6.51 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_distance_based_connectivity.py" [FAIL] 6.8s 1160s Time: 6.81 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_super_cell.py" [FAIL] 7.6s 1160s Time: 7.64 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/adptbx/boost_python/tst_adptbx.py" [FAIL] 7.7s 1160s Time: 7.73 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/boost_python/tst_miller.py" [FAIL] 6.5s 1160s Time: 6.54 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_xray_scattering.py" [FAIL] 6.2s 1160s Time: 6.15 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_formula.py" [FAIL] 5.3s 1160s Time: 5.34 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_attenuation_coefficient.py" [FAIL] 5.8s 1160s Time: 5.83 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/boost_python/tst_maptbx.py" [FAIL] 6.1s 1160s Time: 6.14 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_bcr.py" [FAIL] 7.4s 1160s Time: 7.43 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_loft.py" [FAIL] 7.3s 1160s Time: 7.35 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/dmtbx/boost_python/tst_dmtbx.py" [FAIL] 6.1s 1160s Time: 6.09 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/translation_search/boost_python/tst_translation_search.py" [FAIL] 6.0s 1160s Time: 6.03 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_ext.py" [FAIL] 6.2s 1160s Time: 6.24 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py" [FAIL] 4.3s 1160s Time: 4.32 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/adp_restraints/tst_ext.py" [FAIL] 6.1s 1160s Time: 6.06 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_krivy_gruber.py" --Quick [FAIL] 6.1s 1160s Time: 6.06 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx.py" [FAIL] 5.7s 1160s Time: 5.71 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py" [FAIL] 5.7s 1160s Time: 5.69 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_denominators.py" P31 [FAIL] 5.8s 1160s Time: 5.83 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py" [FAIL] 5.6s 1160s Time: 5.57 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py" [FAIL] 5.7s 1160s Time: 5.74 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints.py" P3 [FAIL] 6.2s 1160s Time: 6.18 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py" [FAIL] 6.1s 1160s Time: 6.14 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reflection_statistics.py" [FAIL] 5.8s 1160s Time: 5.84 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_harker.py" [FAIL] 6.3s 1160s Time: 6.34 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py" [FAIL] 6.2s 1160s Time: 6.16 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_twin_target.py" [FAIL] 6.5s 1160s Time: 6.55 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/symbol_confidence.py" [FAIL] 6.4s 1160s Time: 6.43 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/bravais_types.py" [FAIL] 6.2s 1160s Time: 6.19 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_lookup_utils.py" [FAIL] 6.3s 1160s Time: 6.33 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal.py" I41/acd [FAIL] 6.3s 1160s Time: 6.32 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_direct_space_asu.py" I41/acd [FAIL] 6.3s 1160s Time: 6.34 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pair_asu_table.py" [FAIL] 6.3s 1160s Time: 6.28 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py" [FAIL] 6.0s 1160s Time: 6.01 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_close_packing.py" R-3mr [FAIL] 6.0s 1160s Time: 5.97 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py" P31 [FAIL] 6.2s 1160s Time: 6.17 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller.py" P31 [FAIL] 6.2s 1160s Time: 6.19 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_mem.py" [FAIL] 7.1s 1160s Time: 7.05 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py" P312 [FAIL] 6.7s 1160s Time: 6.68 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_triplet_generator.py" P41 [FAIL] 6.7s 1160s Time: 6.73 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_emma.py" P31 [FAIL] 6.9s 1160s Time: 6.86 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_expand_to_p1.py" P31 [FAIL] 6.5s 1160s Time: 6.55 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_change_basis.py" P31 [FAIL] 6.2s 1160s Time: 6.18 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_wilson_plot.py" P31 [FAIL] 6.3s 1160s Time: 6.33 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_derivatives.py" P31 [FAIL] 6.2s 1160s Time: 6.21 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_fast_gradients.py" P31 [FAIL] 6.1s 1160s Time: 6.14 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F P31 [FAIL] 6.2s 1160s Time: 6.16 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F_sq P31 [FAIL] 3.1s 1160s Time: 3.05 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py" P31 [FAIL] 3.5s 1160s Time: 3.52 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py" Pmmm [FAIL] 6.6s 1160s Time: 6.61 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py" [FAIL] 6.3s 1160s Time: 6.34 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation.py" [FAIL] 6.2s 1160s Time: 6.25 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation_2.py" [FAIL] 6.2s 1160s Time: 6.20 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_loc_res.py" [FAIL] 7.4s 1160s Time: 7.38 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_target_and_gradients.py" [FAIL] 7.2s 1160s Time: 7.20 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py" P31 [FAIL] 5.9s 1160s Time: 5.92 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grouped_data.py" P31 [FAIL] 6.1s 1160s Time: 6.11 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_fft_map.py" P31 [FAIL] 6.5s 1160s Time: 6.48 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sampled_model_density.py" P31 [FAIL] 6.3s 1160s Time: 6.28 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fast_nv1995.py" F222 [FAIL] 6.2s 1160s Time: 6.19 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py" [FAIL] 5.7s 1160s Time: 5.66 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_2.py" [FAIL] 7.1s 1160s Time: 7.07 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_french_wilson.py" [FAIL] 6.4s 1160s Time: 6.37 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/make_cns_input.py" P31 [FAIL] 6.4s 1160s Time: 6.37 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pointgroup_tools.py" [FAIL] 5.5s 1160s Time: 5.50 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/sub_lattice_tools.py" [FAIL] 6.3s 1160s Time: 6.25 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py" [FAIL] 6.0s 1160s Time: 5.98 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/cosets.py" [FAIL] 6.3s 1160s Time: 6.25 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_pg_tools.py" [FAIL] 6.5s 1160s Time: 6.47 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_twin_laws.py" [FAIL] 6.4s 1160s Time: 6.38 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_find_best_cell.py" [FAIL] 6.1s 1160s Time: 6.08 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_amplitude_normalisation.py" [FAIL] 6.2s 1160s Time: 6.20 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_statistics_graphs.py" [FAIL] 6.5s 1160s Time: 6.49 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_web_change_basis.py" [FAIL] 6.1s 1160s Time: 6.07 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py" [FAIL] 5.8s 1160s Time: 5.83 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py" [FAIL] 6.0s 1160s Time: 5.99 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/masks/tests/tst_flood_fill.py" [FAIL] 6.1s 1160s Time: 6.08 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_r_free_utils.py" [FAIL] 6.3s 1160s Time: 6.28 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_ccp.py" [FAIL] 6.3s 1160s Time: 6.30 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_mask.py" [FAIL] 6.6s 1160s Time: 6.58 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py" [FAIL] 6.7s 1160s Time: 6.72 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_asymmetric_map.py" [FAIL] 6.7s 1160s Time: 6.71 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py" [FAIL] 6.5s 1160s Time: 6.47 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py" [FAIL] 6.6s 1160s Time: 6.65 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_curves.py" [FAIL] 6.7s 1160s Time: 6.68 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py" [FAIL] 6.4s 1160s Time: 6.39 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py" [FAIL] 6.8s 1160s Time: 6.75 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sphericity.py" [FAIL] 5.4s 1160s Time: 5.40 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_statistics.py" [FAIL] 6.7s 1160s Time: 6.67 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity.py" [FAIL] 6.2s 1160s Time: 6.22 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity_allsym.py" [FAIL] 6.6s 1160s Time: 6.56 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py" [FAIL] 8.9s 1160s Time: 8.92 1160s Return code: 1 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py" [FAIL] 7.4s 1160s Time: 7.37 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/cma_es/tst_cma_es.py" [FAIL] 6.2s 1160s Time: 6.18 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mrc_io.py" [FAIL] 3.2s 1160s Time: 3.24 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/gui_tools/tst.py" [FAIL] 3.7s 1160s Time: 3.71 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_phil.py" [FAIL] 4.9s 1160s Time: 4.87 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_data_manager.py" [FAIL] 6.8s 1160s Time: 6.85 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager_wrapping.py" [FAIL] 7.3s 1160s Time: 7.27 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager.py" [FAIL] 6.3s 1160s Time: 6.35 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py" [FAIL] 4.9s 1160s Time: 4.86 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py" [FAIL] 8.7s 1160s Time: 8.74 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_tools.py" [FAIL] 6.7s 1160s Time: 6.65 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_atom_selections_10k.py" [FAIL] 6.0s 1160s Time: 6.02 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py" [FAIL] 6.4s 1160s Time: 6.40 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/kriber/tst_strudat.py" [FAIL] 6.4s 1160s Time: 6.43 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_geometry.py" [FAIL] 6.1s 1160s Time: 6.11 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_lex_parse_build.py" [FAIL] 6.3s 1160s Time: 6.34 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_model.py" [FAIL] 6.6s 1160s Time: 6.60 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py" [FAIL] 2.2s 1160s Time: 2.17 1160s Return code: 1 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_restraints.py" [FAIL] 6.5s 1160s Time: 6.50 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_hklf.py" [FAIL] 3.6s 1160s Time: 3.61 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_lex_parse_build.py" [FAIL] 6.9s 1160s Time: 6.91 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_writer.py" [FAIL] 6.2s 1160s Time: 6.24 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_fvar_encoding.py" [FAIL] 6.5s 1160s Time: 6.50 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_pdb.py" [FAIL] 6.8s 1160s Time: 6.75 1160s Return code: 134 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_mmcif_hierarchy.py" [FAIL] 7.0s 1160s Time: 7.00 1160s Return code: 134 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_hierarchy.py" [FAIL] 4.1s 1160s Time: 4.13 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_ext.py" [FAIL] 5.9s 1160s Time: 5.91 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_selection.py" [FAIL] 6.6s 1160s Time: 6.62 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_annotation.py" [FAIL] 5.5s 1160s Time: 5.50 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_selection_string.py" [FAIL] 6.4s 1160s Time: 6.43 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_utils.py" [FAIL] 5.5s 1160s Time: 5.47 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/pdb_truncate_to_ala/tst.py" [FAIL] 3.6s 1160s Time: 3.59 1160s Return code: 134 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_examples.py" [FAIL] 7.2s 1160s Time: 7.24 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cns/space_group_symbols.py" [FAIL] 7.0s 1160s Time: 6.99 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cns/tst_cns.py" [FAIL] 5.9s 1160s Time: 5.90 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/tst_merge.py" P31 [FAIL] 6.2s 1160s Time: 6.20 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/no_merge_original_index.py" [FAIL] 6.3s 1160s Time: 6.28 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/ccp4_map/tst.py" [FAIL] 6.5s 1160s Time: 6.47 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_ext.py" [FAIL] 7.1s 1160s Time: 7.07 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_extract_from_symmetry_lib.py" [FAIL] 7.1s 1160s Time: 7.07 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_dano.py" [FAIL] 6.5s 1160s Time: 6.49 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst.py" P31 [FAIL] 5.8s 1160s Time: 5.83 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_utils.py" [FAIL] 6.4s 1160s Time: 6.42 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xplor/tst_xplormap.py" [FAIL] 6.5s 1160s Time: 6.46 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_phases.py" P31 [FAIL] 6.4s 1160s Time: 6.39 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py" [FAIL] 8.3s 1160s Time: 8.26 1160s Return code: 1 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_statistics.py" Fdd2 P31m [FAIL] 7.0s 1160s Time: 6.98 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_file_reader.py" [FAIL] 4.7s 1160s Time: 4.73 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py" [FAIL] 8.9s 1160s Time: 8.91 1160s Return code: 1 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_segids.py" [FAIL] 7.2s 1160s Time: 7.18 1160s Return code: 134 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py" [FAIL] 4.1s 1160s Time: 4.07 1160s Return code: 134 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_symmetry.py" [FAIL] 4.7s 1160s Time: 4.73 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_editor.py" [FAIL] 5.7s 1160s Time: 5.66 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_models.py" [FAIL] 8.2s 1160s Time: 8.22 1160s Return code: 1 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_simple_map_coefficients.py" [FAIL] 5.5s 1160s Time: 5.46 1160s Return code: 139 1160s OKs: 0 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Traceback (most recent call last): 1160s File "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py", line 140, in 1160s exercise() 1160s ~~~~~~~~^^ 1160s File "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py", line 126, in exercise 1160s assert not easy_run.call(cmd) 1160s ^^^^^^^^^^^^^^^^^^^^^^ 1160s AssertionError 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Traceback (most recent call last): 1160s File "/usr/lib/python3.13/urllib/request.py", line 1541, in ftp_open 1160s fw = self.connect_ftp(user, passwd, host, port, dirs, req.timeout) 1160s File "/usr/lib/python3.13/urllib/request.py", line 1561, in connect_ftp 1160s return ftpwrapper(user, passwd, host, port, dirs, timeout, 1160s persistent=False) 1160s File "/usr/lib/python3.13/urllib/request.py", line 2409, in __init__ 1160s self.init() 1160s ~~~~~~~~~^^ 1160s File "/usr/lib/python3.13/urllib/request.py", line 2418, in init 1160s self.ftp.connect(self.host, self.port, self.timeout) 1160s ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1160s File "/usr/lib/python3.13/ftplib.py", line 158, in connect 1160s self.sock = socket.create_connection((self.host, self.port), self.timeout, 1160s ~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1160s source_address=self.source_address) 1160s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1160s File "/usr/lib/python3.13/socket.py", line 864, in create_connection 1160s raise exceptions[0] 1160s File "/usr/lib/python3.13/socket.py", line 849, in create_connection 1160s sock.connect(sa) 1160s ~~~~~~~~~~~~^^^^ 1160s ConnectionRefusedError: [Errno 111] Connection refused 1160s 1160s The above exception was the direct cause of the following exception: 1160s 1160s Traceback (most recent call last): 1160s File "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py", line 327, in 1160s exercise(sys.argv[1:]) 1160s ~~~~~~~~^^^^^^^^^^^^^^ 1160s File "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py", line 26, in exercise 1160s exercise_validation() 1160s ~~~~~~~~~~~~~~~~~~~^^ 1160s File "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py", line 29, in exercise_validation 1160s cd = validation.smart_load_dictionary(name="cif_core.dic") 1160s File "/usr/lib/python3/dist-packages/iotbx/cif/validation.py", line 111, in smart_load_dictionary 1160s url = locate_dictionary(name, registry_location=registry_location) 1160s File "/usr/lib/python3/dist-packages/iotbx/cif/validation.py", line 129, in locate_dictionary 1160s cm = cif.reader(file_object=urlopen(registry_location)).model() 1160s ~~~~~~~^^^^^^^^^^^^^^^^^^^ 1160s File "/usr/lib/python3.13/urllib/request.py", line 189, in urlopen 1160s return opener.open(url, data, timeout) 1160s ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^ 1160s File "/usr/lib/python3.13/urllib/request.py", line 489, in open 1160s response = self._open(req, data) 1160s File "/usr/lib/python3.13/urllib/request.py", line 506, in _open 1160s result = self._call_chain(self.handle_open, protocol, protocol + 1160s '_open', req) 1160s File "/usr/lib/python3.13/urllib/request.py", line 466, in _call_chain 1160s result = func(*args) 1160s File "/usr/lib/python3.13/urllib/request.py", line 1558, in ftp_open 1160s raise URLError(exp) from exp 1160s urllib.error.URLError: 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s *** buffer overflow detected ***: terminated 1160s Aborted (core dumped) 1160s Standard error: 1160s *** buffer overflow detected ***: terminated 1160s Aborted (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s *** buffer overflow detected ***: terminated 1160s Aborted (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s /usr/lib/python3/dist-packages/ccp4io_adaptbx/__init__.py:25: UserWarning: ccp4io_adaptbx: cannot locate syminfo.lib 1160s warnings.warn("ccp4io_adaptbx: cannot locate syminfo.lib") 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Traceback (most recent call last): 1160s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py", line 477, in 1160s exercise(sys.argv[1:]) 1160s ~~~~~~~~^^^^^^^^^^^^^^ 1160s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py", line 22, in exercise 1160s run_and_compare( 1160s ~~~~~~~~~~~~~~~^ 1160s ['iotbx.lattice_symmetry' 1160s ^^^^^^^^^^^^^^^^^^^^^^^^^ 1160s ...<31 lines>... 1160s 1160s 1160s """) 1160s ^^^^ 1160s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py", line 17, in run_and_compare 1160s command=command).raise_if_errors().stdout_lines 1160s ~~~~~~~~~~~~~~~^^ 1160s File "/usr/lib/python3/dist-packages/libtbx/easy_run.py", line 46, in raise_if_errors 1160s raise Error(msg) 1160s RuntimeError: child process stderr output: 1160s command: 'iotbx.lattice_symmetry --unit_cell="12.7923,12.8923,29.4356,102.846,103.846,22.7475"' 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s *** buffer overflow detected ***: terminated 1160s Aborted (core dumped) 1160s Traceback (most recent call last): 1160s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py", line 138, in 1160s exercise() 1160s ~~~~~~~~^^ 1160s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py", line 48, in exercise 1160s assert not easy_run.call("iotbx.pdb.box_around_molecule %s.pdb" % ( 1160s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1160s prefix)) 1160s ^^^^^^^^ 1160s AssertionError 1160s Standard error: 1160s *** buffer overflow detected ***: terminated 1160s Aborted (core dumped) 1160s Standard error: 1160s *** buffer overflow detected ***: terminated 1160s Aborted (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Traceback (most recent call last): 1160s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_models.py", line 60, in 1160s exercise() 1160s ~~~~~~~~^^ 1160s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_models.py", line 48, in exercise 1160s assert (len(out.stdout_lines) == 2) and (len(out.stderr_lines) == 0) 1160s ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1160s AssertionError 1160s Standard error: 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_sort_atoms.py" [FAIL] 7.0s 1160s Time: 6.98 1160s Return code: 1 1160s OKs: 0 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Traceback (most recent call last): 1160s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_sort_atoms.py", line 815, in 1160s exercise_1() 1160s ~~~~~~~~~~^^ 1160s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_sort_atoms.py", line 806, in exercise_1 1160s assert not easy_run.call(cmd) 1160s ^^^^^^^^^^^^^^^^^^^^^^ 1160s AssertionError 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s *** buffer overflow detected ***: terminated 1160s Aborted (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Traceback (most recent call last): 1160s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_data_cif.py", line 395, in 1160s tst_1() 1160s ~~~~~^^ 1160s File "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_data_cif.py", line 370, in tst_1 1160s assert os.path.isfile('%s.cif_%s_000.mtz' % (prefix, bn)) 1160s ~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 1160s AssertionError 1160s Standard error: 1160s *** buffer overflow detected ***: terminated 1160s Aborted (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s *** buffer overflow detected ***: terminated 1160s Aborted (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_integrate_hkl.py" [FAIL] 7.2s 1160s Time: 7.19 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py" [FAIL] 4.0s 1160s Time: 3.99 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py" [FAIL] 6.3s 1160s Time: 6.29 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/dsn6/tst.py" P31 [FAIL] 6.3s 1160s Time: 6.34 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py" [FAIL] 5.2s 1160s Time: 5.19 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py" [FAIL] 6.6s 1160s Time: 6.56 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py" [FAIL] 6.6s 1160s Time: 6.58 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py" [FAIL] 7.5s 1160s Time: 7.51 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_input.py" [FAIL] 7.4s 1160s Time: 7.42 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py" [FAIL] 6.4s 1160s Time: 6.42 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs.py" [FAIL] 7.2s 1160s Time: 7.19 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py" [FAIL] 7.1s 1160s Time: 7.14 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_read_mtrix_records_from_cif.py" [FAIL] 7.2s 1160s Time: 7.17 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_show_systematic_absences.py" [FAIL] 7.2s 1160s Time: 7.23 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_miller_sort_asu.py" [FAIL] 6.4s 1160s Time: 6.37 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_xray_scale.py" [FAIL] 6.8s 1160s Time: 6.76 1160s Return code: 134 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cif_as_pdb_1atom.py" [FAIL] 7.0s 1160s Time: 7.00 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cif_1.py" [FAIL] 8.1s 1160s Time: 8.10 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_data_cif.py" [FAIL] 10.2s 1160s Time: 10.24 1160s Return code: 1 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_all_chain_ids.py" [FAIL] 8.7s 1160s Time: 8.73 1160s Return code: 134 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_extract_xtal_data.py" [FAIL] 6.0s 1160s Time: 5.95 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cli_parser.py" [FAIL] 7.9s 1160s Time: 7.88 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_occupancies_rounding.py" [FAIL] 6.9s 1160s Time: 6.91 1160s Return code: 134 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_debug_write.py" [FAIL] 3.1s 1160s Time: 3.12 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_smoothing.py" [FAIL] 2.9s 1160s Time: 2.90 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_genetic_algorithm_with_mp.py" [FAIL] 3.2s 1160s Time: 3.19 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_basic.py" [FAIL] 5.0s 1160s Time: 5.00 1160s Return code: 139 1160s OKs: 1 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_minimum_covering_ellipsoid.py" [FAIL] 4.9s 1160s Time: 4.88 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py" [FAIL] 5.3s 1160s Time: 5.26 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_cubic_equation.py" [FAIL] 5.4s 1160s Time: 5.41 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_cholesky.py" [FAIL] 4.8s 1160s Time: 4.79 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_svd.py" [FAIL] 5.2s 1160s Time: 5.25 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_eigensystem.py" [FAIL] 5.2s 1160s Time: 5.20 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_lapack_svd.py" [FAIL] 5.2s 1160s Time: 5.24 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_lapack_dsyev.py" [FAIL] 5.4s 1160s Time: 5.38 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/regression_test.py" [FAIL] 5.1s 1160s Time: 5.08 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_flex.py" [FAIL] 5.7s 1160s Time: 5.74 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_numpy_bridge.py" [FAIL] 5.7s 1160s Time: 5.73 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_smart_selection.py" [FAIL] 5.1s 1160s Time: 5.12 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_shared.py" [FAIL] 5.0s 1160s Time: 5.01 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/__init__.py" [FAIL] 3.0s 1160s Time: 3.00 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_random_transform.py" [FAIL] 2.9s 1160s Time: 2.94 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/superpose.py" [FAIL] 2.7s 1160s Time: 2.66 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/spe.py" [FAIL] 2.7s 1160s Time: 2.69 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/incremental_SO3_sampling.py" [FAIL] 4.3s 1160s Time: 4.25 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_curve_fitting.py" [FAIL] 5.0s 1160s Time: 4.95 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_weighted_correlation.py" [FAIL] 5.5s 1160s Time: 5.53 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_exp_functions.py" [FAIL] 5.3s 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Time: 5.29 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_math.py" [FAIL] 4.6s 1160s Time: 4.61 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_resample.py" [FAIL] 2.7s 1160s Time: 2.69 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gaussian.py" [FAIL] 3.8s 1160s Time: 3.76 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_quadrature.py" [FAIL] 5.3s 1160s Time: 5.27 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_halton.py" [FAIL] 5.2s 1160s Time: 5.20 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/scale_curves.py" [FAIL] 3.0s 1160s Time: 3.04 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_fit_peak.py" [FAIL] 2.9s 1160s Time: 2.90 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_clustering.py" [FAIL] 2.6s 1160s Time: 2.63 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_zernike.py" [FAIL] 14.0s 1160s Time: 13.96 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_periodogram.py" [FAIL] 6.1s 1160s Time: 6.06 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_error_propagation_matrix_inverse.py" [FAIL] 5.3s 1160s Time: 5.33 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_curvatures.py" [FAIL] 4.6s 1160s Time: 4.65 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgsb/boost_python/tst_lbfgsb.py" [FAIL] 3.0s 1160s Time: 2.95 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/fftpack/boost_python/tst_fftpack.py" [FAIL] 3.0s 1160s Time: 3.00 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/flex_grid.py" [FAIL] 2.7s 1160s Time: 2.73 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/lbfgs_linear_least_squares_fit.py" [FAIL] 3.3s 1160s Time: 3.35 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/chebyshev_lsq_example.py" [FAIL] 5.2s 1160s Time: 5.20 1160s Return code: 139 1160s OKs: 0 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/immoptibox_ports.py" [FAIL] 5.7s 1160s Time: 5.66 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/integrating_a_weighted_sinc_function.py" [FAIL] 5.9s 1160s Time: 5.93 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/minimizer_comparisons.py" [FAIL] 5.7s 1160s Time: 5.73 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_tardy_tree.py" [FAIL] 3.2s 1160s Time: 3.19 1160s Return code: 139 1160s OKs: 0 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_basic.py" [FAIL] 4.8s 1160s Time: 4.85 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_tardy.py" [FAIL] 5.2s 1160s Time: 5.21 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_energy_plots.py" [FAIL] 5.3s 1160s Time: 5.34 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/tst.py" [FAIL] 5.2s 1160s Time: 5.22 1160s Return code: 139 1160s OKs: 0 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_featherstone.py" [FAIL] 5.1s 1160s Time: 5.09 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_free_motion.py" [FAIL] 5.1s 1160s Time: 5.11 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_free_motion_hard.py" [FAIL] 5.1s 1160s Time: 5.10 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_joint_lib.py" [FAIL] 5.1s 1160s Time: 5.08 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_singular.py" [FAIL] 5.1s 1160s Time: 5.14 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_molecules.py" [FAIL] 5.0s 1160s Time: 4.99 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/sparse/tests/tst_sparse.py" [FAIL] 5.3s 1160s Time: 5.26 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/sparse/tests/tst_lu_factorization.py" [FAIL] 5.1s 1160s Time: 5.15 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/iso_surface/tst_iso_surface.py" [FAIL] 5.2s 1160s Time: 5.16 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/simplex.py" [FAIL] 5.2s 1160s Time: 5.19 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/differential_evolution.py" [FAIL] 5.1s 1160s Time: 5.11 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/direct_search_simulated_annealing.py" [FAIL] 4.9s 1160s Time: 4.92 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/random/tests/tst_random.py" [FAIL] 5.9s 1160s Time: 5.88 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/lstbx/tests/tst_normal_equations.py" [FAIL] 6.0s 1160s Time: 5.95 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_basic.py" [FAIL] 4.4s 1160s Time: 4.42 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_booth.py" [FAIL] 4.8s 1160s Time: 4.84 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_twisted.py" [FAIL] 5.1s 1160s Time: 5.06 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/absolute_structure/tests/tst_absolute_structure.py" --fix_random_seeds [FAIL] 5.7s 1160s Time: 5.72 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py" [FAIL] 6.1s 1160s Time: 6.13 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py" --fix_seed --on=E "hall: P 1" "hall: P 3" "hall: -P 2ybc" [FAIL] 6.0s 1160s Time: 5.97 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/masks/tests/tst_masks.py" [FAIL] 6.4s 1160s Time: 6.40 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/structure_factors/direct/tests/tst_standard_xray.py" [FAIL] 6.6s 1160s Time: 6.60 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/tests/tst_weighting_schemes.py" --fix_random_seeds [FAIL] 6.3s 1160s Time: 6.29 1160s Return code: 139 1160s OKs: 0 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py" [FAIL] 6.1s 1160s Time: 6.12 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_occupancies.py" [FAIL] 6.4s 1160s Time: 6.43 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_same_group.py" [FAIL] 6.4s 1160s Time: 6.37 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py" [FAIL] 6.2s 1160s Time: 6.18 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py" --normal_eqns_solving_method=naive [FAIL] 6.4s 1160s Time: 6.39 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_disorder.py" [FAIL] 6.4s 1160s Time: 6.41 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py" --normal_eqns_solving_method=levenberg-marquardt [FAIL] 3.3s 1160s Time: 3.27 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_direction.py" [FAIL] 3.3s 1160s Time: 3.30 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_rigid.py" [FAIL] 6.3s 1160s Time: 6.34 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_adp_restraints.py" [FAIL] 6.1s 1160s Time: 6.14 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_manager.py" [FAIL] 6.1s 1160s Time: 6.15 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_restraints.py" --verbose --scatterers=5 --resolution=0.2 [FAIL] 6.2s 1160s Time: 6.19 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_refine.py" [FAIL] 6.5s 1160s Time: 6.47 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_anomrefine.py" [FAIL] 8.7s 1160s Time: 8.74 1160s Return code: 1 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/smtbx/tests/tst_utils.py" [FAIL] 6.8s 1160s Time: 6.81 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/rstbx/dps_core/tst_iotbx_converter.py" [FAIL] 5.8s 1160s Time: 5.76 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/fastbragg/tst_bragg_minimal.py" [FAIL] 5.2s 1160s Time: 5.22 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python "/usr/lib/python3/dist-packages/rstbx/sublattice_support/tst_sublattice.py" [FAIL] 5.9s 1160s Time: 5.92 1160s Return code: 139 1160s OKs: 0 1160s libtbx.python -c "from rstbx.run_tests import run; run()" [FAIL] 4.5s 1160s Time: 4.46 1160s Return code: 139 1160s OKs: 0 1160s 1160s Please verify these tests manually. 1160s 1160s Summary: 1160s Tests run : 546 1160s Failures : 284 1160s Warnings (possible failures) : 0 1160s Known Failures ( 4) : 4 1160s Known Unstable ( 3) : 2 1160s Stderr output (discouraged) : 291 1160s 1160s See run_tests_parallel_zlog for full output. 1160s 1160s 1160s ******************************************************************************** 1160s ERROR: 284 TEST FAILURES. PLEASE FIX BEFORE COMMITTING CODE. 1160s ******************************************************************************** 1160s 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Traceback (most recent call last): 1160s File "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_anomrefine.py", line 37, in 1160s run() 1160s ~~~^^ 1160s File "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_anomrefine.py", line 27, in run 1160s run_buf.raise_if_errors() 1160s ~~~~~~~~~~~~~~~~~~~~~~~^^ 1160s File "/usr/lib/python3/dist-packages/libtbx/easy_run.py", line 46, in raise_if_errors 1160s raise Error(msg) 1160s RuntimeError: child process stderr output: 1160s command: 'smtbx.anom_refine /usr/lib/python3/dist-packages/smtbx/regression/test_data/thpp.cif /usr/lib/python3/dist-packages/smtbx/regression/test_data/thpp.hkl F -e13000 -t -O -d0 -s0 -c25' 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1160s Standard error: 1160s Segmentation fault (core dumped) 1161s autopkgtest [15:04:55]: test cctbx: -----------------------] 1161s autopkgtest [15:04:55]: test cctbx: - - - - - - - - - - results - - - - - - - - - - 1161s cctbx FAIL non-zero exit status 1 1162s autopkgtest [15:04:56]: test dxtbx: preparing testbed 1250s autopkgtest [15:06:24]: testbed dpkg architecture: ppc64el 1250s autopkgtest [15:06:24]: testbed apt version: 2.9.34 1250s autopkgtest [15:06:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1250s autopkgtest [15:06:24]: testbed release detected to be: plucky 1251s autopkgtest [15:06:25]: updating testbed package index (apt update) 1251s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 1252s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 1252s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 1252s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 1252s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [12.2 kB] 1252s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [31.2 kB] 1252s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [1232 B] 1252s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [291 kB] 1252s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [46.4 kB] 1252s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el c-n-f Metadata [1320 B] 1252s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted ppc64el c-n-f Metadata [120 B] 1252s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [199 kB] 1252s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el c-n-f Metadata [10.8 kB] 1252s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [3456 B] 1252s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el c-n-f Metadata [216 B] 1254s Fetched 724 kB in 1s (847 kB/s) 1254s Reading package lists... 1255s autopkgtest [15:06:29]: upgrading testbed (apt dist-upgrade and autopurge) 1255s Reading package lists... 1255s Building dependency tree... 1255s Reading state information... 1256s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 1256s Starting 2 pkgProblemResolver with broken count: 0 1256s Done 1256s Entering ResolveByKeep 1256s 1256s Calculating upgrade... 1256s The following packages will be upgraded: 1256s dracut-install gcc-15-base ibverbs-providers initramfs-tools 1256s initramfs-tools-bin initramfs-tools-core libatomic1 libgcc-s1 libibverbs1 1256s libstdc++6 1256s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1256s Need to get 1638 kB of archives. 1256s After this operation, 0 B of additional disk space will be used. 1256s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el libatomic1 ppc64el 15-20250319-1ubuntu1 [10.8 kB] 1256s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-15-base ppc64el 15-20250319-1ubuntu1 [53.6 kB] 1257s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgcc-s1 ppc64el 15-20250319-1ubuntu1 [40.1 kB] 1257s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libstdc++6 ppc64el 15-20250319-1ubuntu1 [901 kB] 1257s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el libibverbs1 ppc64el 56.0-3ubuntu1 [74.1 kB] 1257s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el ibverbs-providers ppc64el 56.0-3ubuntu1 [431 kB] 1257s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el dracut-install ppc64el 106-2ubuntu4 [39.7 kB] 1257s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el initramfs-tools all 0.146ubuntu2 [8034 B] 1257s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el initramfs-tools-core all 0.146ubuntu2 [52.0 kB] 1257s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el initramfs-tools-bin ppc64el 0.146ubuntu2 [26.6 kB] 1257s Fetched 1638 kB in 1s (2747 kB/s) 1258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 107156 files and directories currently installed.) 1258s Preparing to unpack .../libatomic1_15-20250319-1ubuntu1_ppc64el.deb ... 1258s Unpacking libatomic1:ppc64el (15-20250319-1ubuntu1) over (15-20250315-1ubuntu1) ... 1258s Preparing to unpack .../gcc-15-base_15-20250319-1ubuntu1_ppc64el.deb ... 1258s Unpacking gcc-15-base:ppc64el (15-20250319-1ubuntu1) over (15-20250315-1ubuntu1) ... 1258s Setting up gcc-15-base:ppc64el (15-20250319-1ubuntu1) ... 1258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 107156 files and directories currently installed.) 1258s Preparing to unpack .../libgcc-s1_15-20250319-1ubuntu1_ppc64el.deb ... 1258s Unpacking libgcc-s1:ppc64el (15-20250319-1ubuntu1) over (15-20250315-1ubuntu1) ... 1258s Setting up libgcc-s1:ppc64el (15-20250319-1ubuntu1) ... 1258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 107156 files and directories currently installed.) 1258s Preparing to unpack .../libstdc++6_15-20250319-1ubuntu1_ppc64el.deb ... 1258s Unpacking libstdc++6:ppc64el (15-20250319-1ubuntu1) over (15-20250315-1ubuntu1) ... 1258s Setting up libstdc++6:ppc64el (15-20250319-1ubuntu1) ... 1258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 107156 files and directories currently installed.) 1258s Preparing to unpack .../0-libibverbs1_56.0-3ubuntu1_ppc64el.deb ... 1258s Unpacking libibverbs1:ppc64el (56.0-3ubuntu1) over (55.0-1ubuntu1) ... 1258s Preparing to unpack .../1-ibverbs-providers_56.0-3ubuntu1_ppc64el.deb ... 1258s Unpacking ibverbs-providers:ppc64el (56.0-3ubuntu1) over (55.0-1ubuntu1) ... 1258s Preparing to unpack .../2-dracut-install_106-2ubuntu4_ppc64el.deb ... 1258s Unpacking dracut-install (106-2ubuntu4) over (106-2ubuntu3) ... 1258s Preparing to unpack .../3-initramfs-tools_0.146ubuntu2_all.deb ... 1258s Unpacking initramfs-tools (0.146ubuntu2) over (0.146ubuntu1) ... 1258s Preparing to unpack .../4-initramfs-tools-core_0.146ubuntu2_all.deb ... 1258s Unpacking initramfs-tools-core (0.146ubuntu2) over (0.146ubuntu1) ... 1258s Preparing to unpack .../5-initramfs-tools-bin_0.146ubuntu2_ppc64el.deb ... 1258s Unpacking initramfs-tools-bin (0.146ubuntu2) over (0.146ubuntu1) ... 1258s Setting up libibverbs1:ppc64el (56.0-3ubuntu1) ... 1258s Setting up ibverbs-providers:ppc64el (56.0-3ubuntu1) ... 1258s Setting up libatomic1:ppc64el (15-20250319-1ubuntu1) ... 1258s Setting up dracut-install (106-2ubuntu4) ... 1258s Setting up initramfs-tools-bin (0.146ubuntu2) ... 1258s Setting up initramfs-tools-core (0.146ubuntu2) ... 1258s Setting up initramfs-tools (0.146ubuntu2) ... 1258s Installing new version of config file /etc/kernel/postinst.d/initramfs-tools ... 1258s update-initramfs: deferring update (trigger activated) 1258s Processing triggers for man-db (2.13.0-1) ... 1260s Processing triggers for libc-bin (2.41-1ubuntu2) ... 1260s Processing triggers for initramfs-tools (0.146ubuntu2) ... 1260s update-initramfs: Generating /boot/initrd.img-6.14.0-11-generic 1260s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 1270s Reading package lists... 1270s Building dependency tree... 1270s Reading state information... 1270s Starting pkgProblemResolver with broken count: 0 1270s Starting 2 pkgProblemResolver with broken count: 0 1270s Done 1270s Solving dependencies... 1270s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1271s autopkgtest [15:06:45]: rebooting testbed after setup commands that affected boot 1305s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 1314s Reading package lists... 1314s Building dependency tree... 1314s Reading state information... 1314s Starting pkgProblemResolver with broken count: 0 1314s Starting 2 pkgProblemResolver with broken count: 0 1314s Done 1315s The following NEW packages will be installed: 1315s adwaita-icon-theme at-spi2-common bitshuffle blt dconf-gsettings-backend 1315s dconf-service fontconfig fontconfig-config fonts-dejavu-core 1315s fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx 1315s gtk-update-icon-cache hicolor-icon-theme libaec0 libamd-comgr2 libamdhip64-5 1315s libann-cctbx-dev libann-cctbx0 libantlr3c-3.4-0 libasan8 1315s libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 1315s libavahi-common-data libavahi-common3 libblas3 libboost-numpy1.83.0 1315s libboost-python-dev libboost-python1.83-dev libboost-python1.83.0 1315s libboost-thread1.83.0 libboost-timer1.83.0 libboost1.83-dev 1315s libcairo-gobject2 libcairo2 libcbf1t64 libccp4-data libccp4-dev libccp4c0t64 1315s libccp4f0t64 libcctbx-dev libcctbx0 libcolord2 libcups2t64 libdatrie1 1315s libdconf1 libdeflate0 libdouble-conversion3 libegl-mesa0 libegl1 libepoxy0 1315s libevent-pthreads-2.1-7t64 libexpat1-dev libfabric1 libfontconfig1 libgbm1 1315s libgcc-14-dev libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 1315s libgl1 libgl1-mesa-dri libglew2.2 libglu1-mesa libglut3.12 libglvnd0 1315s libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libgtk-3-0t64 libgtk-3-common 1315s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libhdf5-openmpi-310 1315s libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libibmad5 1315s libibumad3 libice6 libimagequant0 libinput-bin libinput10 libitm1 libjbig0 1315s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc 1315s libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libllvm17t64 1315s liblsan0 liblzf1 libmd4c0 libmmdb2-0 libmtdev1t64 libmunge2 libnetcdf22 1315s libnotify4 libopengl0 libopenjp2-7 libopenmpi40 libpango-1.0-0 1315s libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 1315s libpcre2-32-0 libpixman-1-0 libpmix2t64 libpython3-dev libpython3.13-dev 1315s libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 1315s libqt5help5 libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 1315s libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libquadmath0 1315s libraqm0 librdmacm1t64 libsharpyuv0 libsm6 libssm2 libstdc++-14-dev libsz2 1315s libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 libucx0 1315s libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 1315s libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 1315s libwxbase3.2-1t64 libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 libx11-xcb1 1315s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 1315s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 1315s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 1315s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcomposite1 libxcursor1 1315s libxdamage1 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon-x11-0 1315s libxnvctrl0 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxtst6 1315s libxxf86vm1 mesa-libgallium ocl-icd-libopencl1 pymol-data 1315s python-matplotlib-data python3-all python3-brotli python3-cctbx 1315s python3-contourpy python3-cycler python3-dateutil python3-decorator 1315s python3-dev python3-dials-data python3-flexcache python3-flexparser 1315s python3-fonttools python3-fs python3-h5py python3-h5py-serial 1315s python3-hdf5plugin python3-importlib-resources python3-iniconfig 1315s python3-kiwisolver python3-legacy-cgi python3-lxml python3-lz4 1315s python3-matplotlib python3-mpmath python3-mrcfile python3-natsort 1315s python3-numpy python3-numpy-dev python3-nxmx python3-opengl 1315s python3-ordered-set python3-packaging python3-pil python3-pil.imagetk 1315s python3-pint python3-platformdirs python3-pluggy python3-procrunner 1315s python3-pycbf python3-pymol python3-pyqt5 python3-pyqt5.qtopengl 1315s python3-pyqt5.sip python3-pytest python3-pytest-datadir python3-pytest-mock 1315s python3-pytest-regressions python3-scipy python3-six python3-sympy 1315s python3-tk python3-tqdm python3-ufolib2 python3-wxgtk4.0 python3.13-dev 1315s python3.13-tk sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data x11-common 1315s zlib1g-dev 1315s 0 upgraded, 264 newly installed, 0 to remove and 0 not upgraded. 1315s Need to get 270 MB of archives. 1315s After this operation, 1382 MB of additional disk space will be used. 1315s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-lato all 2.015-1 [2781 kB] 1315s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy-dev ppc64el 1:2.2.3+ds-5 [154 kB] 1315s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.1-2 [239 kB] 1315s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 15-20250319-1ubuntu1 [614 kB] 1315s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.1-2 [2813 kB] 1316s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:2.2.3+ds-5 [4835 kB] 1316s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgdk-pixbuf2.0-common all 2.42.12+dfsg-2 [8004 B] 1316s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB] 1316s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 1316s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.23-1 [63.4 kB] 1316s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB] 1316s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB] 1316s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB] 1316s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB] 1316s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB] 1316s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgdk-pixbuf-2.0-0 ppc64el 2.42.12+dfsg-2 [191 kB] 1316s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el gtk-update-icon-cache ppc64el 4.18.2+ds-1 [55.4 kB] 1316s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el hicolor-icon-theme all 0.18-2 [13.3 kB] 1316s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el adwaita-icon-theme all 48.0-1 [578 kB] 1316s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el at-spi2-common all 2.56.0-2 [9108 B] 1316s Get:21 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libaec0 ppc64el 1.1.3-1 [30.1 kB] 1316s Get:22 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libsz2 ppc64el 1.1.3-1 [5566 B] 1316s Get:23 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-310 ppc64el 1.14.5+repack-3 [1523 kB] 1316s Get:24 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-hl-310 ppc64el 1.14.5+repack-3 [74.9 kB] 1316s Get:25 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblzf1 ppc64el 3.6-4 [7920 B] 1316s Get:26 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-h5py-serial ppc64el 3.13.0-1 [1191 kB] 1316s Get:27 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-h5py all 3.13.0-1 [7978 B] 1316s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 15-20250319-1ubuntu1 [168 kB] 1316s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el libevent-pthreads-2.1-7t64 ppc64el 2.1.12-stable-10 [8026 B] 1316s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el librdmacm1t64 ppc64el 56.0-3ubuntu1 [80.5 kB] 1316s Get:31 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libfabric1 ppc64el 1.17.0-3.1 [693 kB] 1316s Get:32 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhwloc15 ppc64el 2.12.0-1 [221 kB] 1316s Get:33 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libmunge2 ppc64el 0.5.16-1 [17.3 kB] 1316s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpciaccess0 ppc64el 0.17-3build1 [21.4 kB] 1316s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxnvctrl0 ppc64el 510.47.03-0ubuntu4 [12.6 kB] 1316s Get:36 http://ftpmaster.internal/ubuntu plucky/universe ppc64el ocl-icd-libopencl1 ppc64el 2.3.2-1build1 [42.9 kB] 1316s Get:37 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhwloc-plugins ppc64el 2.12.0-1 [17.5 kB] 1316s Get:38 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libpmix2t64 ppc64el 5.0.6-5 [759 kB] 1316s Get:39 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libllvm17t64 ppc64el 1:17.0.6-21 [27.0 MB] 1317s Get:40 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libamd-comgr2 ppc64el 6.0+git20231212.4510c28+dfsg-3build2 [15.3 MB] 1318s Get:41 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhsakmt1 ppc64el 5.7.0-1build1 [76.4 kB] 1318s Get:42 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhsa-runtime64-1 ppc64el 5.7.1-2build1 [330 kB] 1318s Get:43 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libamdhip64-5 ppc64el 5.7.1-5build1 [9346 kB] 1318s Get:44 http://ftpmaster.internal/ubuntu plucky/main ppc64el libibumad3 ppc64el 56.0-3ubuntu1 [33.6 kB] 1318s Get:45 http://ftpmaster.internal/ubuntu plucky/main ppc64el libibmad5 ppc64el 56.0-3ubuntu1 [46.9 kB] 1318s Get:46 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libucx0 ppc64el 1.18.1+ds-2 [1294 kB] 1318s Get:47 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libopenmpi40 ppc64el 5.0.7-1 [2617 kB] 1318s Get:48 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-openmpi-310 ppc64el 1.14.5+repack-3 [1587 kB] 1318s Get:49 http://ftpmaster.internal/ubuntu plucky/universe ppc64el bitshuffle ppc64el 0.5.2-1build2 [166 kB] 1318s Get:50 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtcl8.6 ppc64el 8.6.16+dfsg-1 [1201 kB] 1318s Get:51 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 1318s Get:52 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 1318s Get:53 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-2.1ubuntu1 [37.7 kB] 1318s Get:54 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-2.1ubuntu1 [188 kB] 1318s Get:55 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 1318s Get:56 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 1318s Get:57 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 1318s Get:58 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 1318s Get:59 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtk8.6 ppc64el 8.6.16-1 [946 kB] 1318s Get:60 http://ftpmaster.internal/ubuntu plucky/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-8 [778 kB] 1318s Get:61 http://ftpmaster.internal/ubuntu plucky/main ppc64el blt ppc64el 2.5.3+dfsg-8 [4830 B] 1318s Get:62 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdconf1 ppc64el 0.40.0-5 [43.7 kB] 1318s Get:63 http://ftpmaster.internal/ubuntu plucky/main ppc64el dconf-service ppc64el 0.40.0-5 [30.8 kB] 1318s Get:64 http://ftpmaster.internal/ubuntu plucky/main ppc64el dconf-gsettings-backend ppc64el 0.40.0-5 [26.0 kB] 1318s Get:65 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig ppc64el 2.15.0-2.1ubuntu1 [192 kB] 1318s Get:66 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 1318s Get:67 http://ftpmaster.internal/ubuntu plucky/universe ppc64el fonts-lyx all 2.4.3-1 [171 kB] 1318s Get:68 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libann-cctbx0 ppc64el 1.1.2+doc-9build1 [37.1 kB] 1318s Get:69 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libann-cctbx-dev ppc64el 1.1.2+doc-9build1 [52.6 kB] 1318s Get:70 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libantlr3c-3.4-0 ppc64el 3.4+dfsg-4build2 [60.7 kB] 1318s Get:71 http://ftpmaster.internal/ubuntu plucky/main ppc64el libasan8 ppc64el 15-20250319-1ubuntu1 [3008 kB] 1319s Get:72 http://ftpmaster.internal/ubuntu plucky/main ppc64el libatk1.0-0t64 ppc64el 2.56.0-2 [59.9 kB] 1319s Get:73 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxi6 ppc64el 2:1.8.2-1 [37.9 kB] 1319s Get:74 http://ftpmaster.internal/ubuntu plucky/main ppc64el libatspi2.0-0t64 ppc64el 2.56.0-2 [101 kB] 1319s Get:75 http://ftpmaster.internal/ubuntu plucky/main ppc64el libatk-bridge2.0-0t64 ppc64el 2.56.0-2 [77.9 kB] 1319s Get:76 http://ftpmaster.internal/ubuntu plucky/main ppc64el libavahi-common-data ppc64el 0.8-16ubuntu2 [31.0 kB] 1319s Get:77 http://ftpmaster.internal/ubuntu plucky/main ppc64el libavahi-common3 ppc64el 0.8-16ubuntu2 [25.9 kB] 1319s Get:78 http://ftpmaster.internal/ubuntu plucky/main ppc64el libavahi-client3 ppc64el 0.8-16ubuntu2 [30.9 kB] 1319s Get:79 http://ftpmaster.internal/ubuntu plucky/main ppc64el libboost-python1.83.0 ppc64el 1.83.0-4.1ubuntu2 [318 kB] 1319s Get:80 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libboost-numpy1.83.0 ppc64el 1.83.0-4.1ubuntu2 [243 kB] 1319s Get:81 http://ftpmaster.internal/ubuntu plucky/main ppc64el libitm1 ppc64el 15-20250319-1ubuntu1 [32.3 kB] 1319s Get:82 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblsan0 ppc64el 15-20250319-1ubuntu1 [1375 kB] 1319s Get:83 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtsan2 ppc64el 15-20250319-1ubuntu1 [2733 kB] 1319s Get:84 http://ftpmaster.internal/ubuntu plucky/main ppc64el libubsan1 ppc64el 15-20250319-1ubuntu1 [1232 kB] 1319s Get:85 http://ftpmaster.internal/ubuntu plucky/main ppc64el libquadmath0 ppc64el 15-20250319-1ubuntu1 [160 kB] 1319s Get:86 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgcc-14-dev ppc64el 14.2.0-19ubuntu1 [1620 kB] 1319s Get:87 http://ftpmaster.internal/ubuntu plucky/main ppc64el libstdc++-14-dev ppc64el 14.2.0-19ubuntu1 [2679 kB] 1319s Get:88 http://ftpmaster.internal/ubuntu plucky/main ppc64el libboost1.83-dev ppc64el 1.83.0-4.1ubuntu2 [10.7 MB] 1319s Get:89 http://ftpmaster.internal/ubuntu plucky/main ppc64el libexpat1-dev ppc64el 2.6.4-1 [149 kB] 1319s Get:90 http://ftpmaster.internal/ubuntu plucky/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu1 [902 kB] 1319s Get:91 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-dev ppc64el 3.13.2-2 [5971 kB] 1319s Get:92 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3-dev ppc64el 3.13.2-2 [10.7 kB] 1319s Get:93 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-dev ppc64el 3.13.2-2 [509 kB] 1319s Get:94 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1319s Get:95 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 1319s Get:96 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-sphinxdoc all 8.1.3-5 [31.0 kB] 1319s Get:97 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dev ppc64el 3.13.2-2 [26.7 kB] 1319s Get:98 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libboost-python1.83-dev ppc64el 1.83.0-4.1ubuntu2 [345 kB] 1319s Get:99 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libboost-python-dev ppc64el 1.83.0.2ubuntu1 [4520 B] 1319s Get:100 http://ftpmaster.internal/ubuntu plucky/main ppc64el libboost-thread1.83.0 ppc64el 1.83.0-4.1ubuntu2 [281 kB] 1320s Get:101 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libboost-timer1.83.0 ppc64el 1.83.0-4.1ubuntu2 [242 kB] 1320s Get:102 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB] 1320s Get:103 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB] 1320s Get:104 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B] 1320s Get:105 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo2 ppc64el 1.18.4-1 [746 kB] 1320s Get:106 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo-gobject2 ppc64el 1.18.4-1 [128 kB] 1320s Get:107 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libcbf1t64 ppc64el 0.9.7+dfsg1-5build1 [415 kB] 1320s Get:108 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libccp4-data all 8.0.0-4 [65.2 kB] 1320s Get:109 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libccp4c0t64 ppc64el 8.0.0-4 [118 kB] 1320s Get:110 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libmmdb2-0 ppc64el 2.0.22-1 [441 kB] 1320s Get:111 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libccp4f0t64 ppc64el 8.0.0-4 [216 kB] 1320s Get:112 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libccp4-dev ppc64el 8.0.0-4 [42.4 kB] 1320s Get:113 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el libcctbx0 ppc64el 2024.10+ds2+~3.22.1+ds1-4build2 [2145 kB] 1320s Get:114 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el libcctbx-dev ppc64el 2024.10+ds2+~3.22.1+ds1-4build2 [1192 kB] 1320s Get:115 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB] 1320s Get:116 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcolord2 ppc64el 1.4.7-3 [162 kB] 1320s Get:117 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcups2t64 ppc64el 2.4.11-0ubuntu2 [347 kB] 1320s Get:118 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdatrie1 ppc64el 0.2.13-3build1 [22.7 kB] 1320s Get:119 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libdouble-conversion3 ppc64el 3.3.1-1 [46.3 kB] 1320s Get:120 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwayland-server0 ppc64el 1.23.1-3 [42.4 kB] 1320s Get:121 http://ftpmaster.internal/ubuntu plucky/main ppc64el libx11-xcb1 ppc64el 2:1.8.10-2 [8008 B] 1320s Get:122 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-dri3-0 ppc64el 1.17.0-2 [7842 B] 1320s Get:123 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-present0 ppc64el 1.17.0-2 [6276 B] 1320s Get:124 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-randr0 ppc64el 1.17.0-2 [19.1 kB] 1320s Get:125 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-sync1 ppc64el 1.17.0-2 [9804 B] 1320s Get:126 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-xfixes0 ppc64el 1.17.0-2 [10.7 kB] 1320s Get:127 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxshmfence1 ppc64el 1.3-1build5 [4964 B] 1320s Get:128 http://ftpmaster.internal/ubuntu plucky/main ppc64el mesa-libgallium ppc64el 25.0.1-2ubuntu2 [9547 kB] 1321s Get:129 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgbm1 ppc64el 25.0.1-2ubuntu2 [39.1 kB] 1321s Get:130 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwayland-client0 ppc64el 1.23.1-3 [31.7 kB] 1321s Get:131 http://ftpmaster.internal/ubuntu plucky/main ppc64el libegl-mesa0 ppc64el 25.0.1-2ubuntu2 [152 kB] 1321s Get:132 http://ftpmaster.internal/ubuntu plucky/main ppc64el libepoxy0 ppc64el 1.5.10-2 [234 kB] 1321s Get:133 http://ftpmaster.internal/ubuntu plucky/main ppc64el libvulkan1 ppc64el 1.4.304.0-1 [163 kB] 1321s Get:134 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgl1-mesa-dri ppc64el 25.0.1-2ubuntu2 [35.0 kB] 1321s Get:135 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglvnd0 ppc64el 1.7.0-1build1 [72.4 kB] 1321s Get:136 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-glx0 ppc64el 1.17.0-2 [26.3 kB] 1321s Get:137 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxxf86vm1 ppc64el 1:1.1.4-1build4 [11.1 kB] 1321s Get:138 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglx-mesa0 ppc64el 25.0.1-2ubuntu2 [175 kB] 1321s Get:139 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglx0 ppc64el 1.7.0-1build1 [42.7 kB] 1321s Get:140 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgl1 ppc64el 1.7.0-1build1 [107 kB] 1321s Get:141 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libglew2.2 ppc64el 2.2.0-4build1 [186 kB] 1321s Get:142 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libglut3.12 ppc64el 3.4.0-4 [131 kB] 1321s Get:143 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 1321s Get:144 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.2.0-1 [598 kB] 1321s Get:145 http://ftpmaster.internal/ubuntu plucky/main ppc64el libthai-data all 0.1.29-2build1 [158 kB] 1321s Get:146 http://ftpmaster.internal/ubuntu plucky/main ppc64el libthai0 ppc64el 0.1.29-2build1 [21.8 kB] 1321s Get:147 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpango-1.0-0 ppc64el 1.56.3-1 [278 kB] 1321s Get:148 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpangoft2-1.0-0 ppc64el 1.56.3-1 [58.9 kB] 1321s Get:149 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpangocairo-1.0-0 ppc64el 1.56.3-1 [30.7 kB] 1321s Get:150 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwayland-cursor0 ppc64el 1.23.1-3 [12.0 kB] 1321s Get:151 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwayland-egl1 ppc64el 1.23.1-3 [6236 B] 1321s Get:152 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcomposite1 ppc64el 1:0.4.6-1 [6816 B] 1321s Get:153 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxfixes3 ppc64el 1:6.0.0-2build1 [11.8 kB] 1321s Get:154 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcursor1 ppc64el 1:1.2.3-1 [27.4 kB] 1321s Get:155 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxdamage1 ppc64el 1:1.1.6-1build1 [6550 B] 1321s Get:156 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxinerama1 ppc64el 2:1.1.4-3build1 [6908 B] 1321s Get:157 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrandr2 ppc64el 2:1.5.4-1 [21.7 kB] 1321s Get:158 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgtk-3-common all 3.24.49-2ubuntu1 [1424 kB] 1321s Get:159 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgtk-3-0t64 ppc64el 3.24.49-2ubuntu1 [3382 kB] 1322s Get:160 http://ftpmaster.internal/ubuntu plucky/main ppc64el libice6 ppc64el 2:1.1.1-1 [49.9 kB] 1322s Get:161 http://ftpmaster.internal/ubuntu plucky/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 1322s Get:162 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwacom-common all 2.14.0-1 [103 kB] 1322s Get:163 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwacom9 ppc64el 2.14.0-1 [32.5 kB] 1322s Get:164 http://ftpmaster.internal/ubuntu plucky/main ppc64el libinput-bin ppc64el 1.27.1-1 [24.1 kB] 1322s Get:165 http://ftpmaster.internal/ubuntu plucky/main ppc64el libmtdev1t64 ppc64el 1.1.7-1 [18.5 kB] 1322s Get:166 http://ftpmaster.internal/ubuntu plucky/main ppc64el libinput10 ppc64el 1.27.1-1 [167 kB] 1322s Get:167 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 1322s Get:168 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB] 1322s Get:169 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libmd4c0 ppc64el 0.5.2-2 [54.5 kB] 1322s Get:170 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libnetcdf22 ppc64el 1:4.9.3-1 [639 kB] 1322s Get:171 http://ftpmaster.internal/ubuntu plucky/main ppc64el libnotify4 ppc64el 0.8.4-1 [28.6 kB] 1322s Get:172 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpcre2-16-0 ppc64el 10.45-1 [286 kB] 1322s Get:173 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpcre2-32-0 ppc64el 10.45-1 [269 kB] 1322s Get:174 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB] 1322s Get:175 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5core5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [2188 kB] 1322s Get:176 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5dbus5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [242 kB] 1322s Get:177 http://ftpmaster.internal/ubuntu plucky/main ppc64el libegl1 ppc64el 1.7.0-1build1 [34.1 kB] 1322s Get:178 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5network5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [808 kB] 1322s Get:179 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsm6 ppc64el 2:1.2.4-1 [18.4 kB] 1322s Get:180 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-icccm4 ppc64el 0.4.2-1 [11.4 kB] 1322s Get:181 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-util1 ppc64el 0.4.1-1 [11.2 kB] 1322s Get:182 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-image0 ppc64el 0.4.0-2build1 [12.4 kB] 1322s Get:183 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-keysyms1 ppc64el 0.4.1-1 [9172 B] 1322s Get:184 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render-util0 ppc64el 0.3.10-1 [11.5 kB] 1322s Get:185 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shape0 ppc64el 1.17.0-2 [6310 B] 1322s Get:186 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-xinerama0 ppc64el 1.17.0-2 [5524 B] 1322s Get:187 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-xinput0 ppc64el 1.17.0-2 [36.9 kB] 1322s Get:188 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-xkb1 ppc64el 1.17.0-2 [37.6 kB] 1322s Get:189 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxkbcommon-x11-0 ppc64el 1.7.0-2 [15.3 kB] 1322s Get:190 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5gui5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [4130 kB] 1322s Get:191 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5widgets5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [2792 kB] 1322s Get:192 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5xml5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [136 kB] 1322s Get:193 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5designer5 ppc64el 5.15.15-6build1 [2915 kB] 1322s Get:194 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5sql5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [134 kB] 1322s Get:195 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5help5 ppc64el 5.15.15-6build1 [179 kB] 1322s Get:196 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5opengl5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [164 kB] 1322s Get:197 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5printsupport5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [222 kB] 1322s Get:198 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5test5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [156 kB] 1322s Get:199 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraqm0 ppc64el 0.10.2-1 [19.2 kB] 1322s Get:200 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libssm2 ppc64el 1.4.0-2build1 [107 kB] 1322s Get:201 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [14.6 kB] 1322s Get:202 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [31.1 kB] 1323s Get:203 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libwxbase3.2-1t64 ppc64el 3.2.6+dfsg-2ubuntu1 [1019 kB] 1323s Get:204 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxtst6 ppc64el 2:1.2.5-1 [14.7 kB] 1323s Get:205 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libwxgtk3.2-1t64 ppc64el 3.2.6+dfsg-2ubuntu1 [5177 kB] 1323s Get:206 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libwxgtk-gl3.2-1t64 ppc64el 3.2.6+dfsg-2ubuntu1 [55.3 kB] 1323s Get:207 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1ubuntu4 [191 kB] 1323s Get:208 http://ftpmaster.internal/ubuntu plucky/universe ppc64el pymol-data all 3.1.0+dfsg-1 [1394 kB] 1323s Get:209 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-matplotlib-data all 3.8.3-7build1 [2934 kB] 1323s Get:210 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-all ppc64el 3.13.2-2 [884 B] 1323s Get:211 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-brotli ppc64el 1.1.0-2build4 [422 kB] 1324s Get:212 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-legacy-cgi all 2.6.2-1 [16.6 kB] 1324s Get:213 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pycbf ppc64el 0.9.7+dfsg1-5build1 [172 kB] 1324s Get:214 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-hdf5plugin all 5.0.0-1 [23.1 kB] 1324s Get:215 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dateutil all 2.9.0-4 [80.3 kB] 1324s Get:216 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.3-2 [248 kB] 1324s Get:217 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pil ppc64el 11.1.0-5build1 [601 kB] 1324s Get:218 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-tk ppc64el 3.13.2-2 [107 kB] 1324s Get:219 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tk ppc64el 3.13.2-1 [9818 B] 1324s Get:220 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pil.imagetk ppc64el 11.1.0-5build1 [10.3 kB] 1324s Get:221 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-contourpy ppc64el 1.3.1-1build1 [218 kB] 1324s Get:222 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-cycler all 0.12.1-1 [9716 B] 1324s Get:223 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-platformdirs all 4.3.6-1 [16.8 kB] 1324s Get:224 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fs all 2.4.16-7 [90.8 kB] 1324s Get:225 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-lxml ppc64el 5.3.1-1build1 [1393 kB] 1324s Get:226 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-lz4 ppc64el 4.4.0+dfsg-1build1 [28.1 kB] 1324s Get:227 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 1324s Get:228 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-scipy ppc64el 1.14.1-4ubuntu2 [19.4 MB] 1325s Get:229 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB] 1325s Get:230 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sympy all 1.13.3-5 [4229 kB] 1325s Get:231 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 1325s Get:232 http://ftpmaster.internal/ubuntu plucky/universe ppc64el unicode-data all 15.1.0-1 [8878 kB] 1325s Get:233 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fonttools ppc64el 4.55.3-2build1 [1521 kB] 1325s Get:234 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-importlib-resources all 6.5.2-1 [24.5 kB] 1325s Get:235 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-kiwisolver ppc64el 1.4.7-3build1 [59.5 kB] 1325s Get:236 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-packaging all 24.2-1 [51.5 kB] 1325s Get:237 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-matplotlib ppc64el 3.8.3-7build1 [17.4 MB] 1326s Get:238 http://ftpmaster.internal/ubuntu plucky/main ppc64el sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB] 1326s Get:239 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-mrcfile all 1.5.4-2 [116 kB] 1326s Get:240 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-natsort all 8.0.2-2 [33.8 kB] 1326s Get:241 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-flexcache all 0.3-2 [13.4 kB] 1326s Get:242 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-flexparser all 0.4-1 [43.8 kB] 1326s Get:243 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pint all 0.24.4-1 [203 kB] 1326s Get:244 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-nxmx all 0.0.4-1 [16.4 kB] 1326s Get:245 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-ordered-set all 4.1.0-1 [9778 B] 1326s Get:246 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-procrunner all 2.3.3-2 [12.0 kB] 1326s Get:247 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopengl0 ppc64el 1.7.0-1build1 [35.5 kB] 1326s Get:248 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglu1-mesa ppc64el 9.0.2-1.1build1 [276 kB] 1326s Get:249 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-opengl all 3.1.9+dfsg-1syncable1 [631 kB] 1326s Get:250 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyqt5.sip ppc64el 12.17.0-1build1 [80.9 kB] 1326s Get:251 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyqt5 ppc64el 5.15.11+dfsg-2 [2650 kB] 1326s Get:252 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyqt5.qtopengl ppc64el 5.15.11+dfsg-2 [118 kB] 1326s Get:253 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pymol ppc64el 3.1.0+dfsg-1 [4268 kB] 1326s Get:254 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-six all 1.17.0-1 [13.2 kB] 1326s Get:255 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-tqdm all 4.67.1-2 [92.5 kB] 1326s Get:256 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-wxgtk4.0 ppc64el 4.2.2+dfsg-3build1 [7919 kB] 1327s Get:257 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el python3-cctbx ppc64el 2024.10+ds2+~3.22.1+ds1-4build2 [29.8 MB] 1328s Get:258 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 1328s Get:259 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pluggy all 1.5.0-1 [21.0 kB] 1328s Get:260 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pytest all 8.3.5-1 [252 kB] 1328s Get:261 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-dials-data all 2.4.0-2 [110 kB] 1328s Get:262 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pytest-datadir all 1.4.1+ds-1 [5386 B] 1328s Get:263 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pytest-mock all 3.14.0-2 [11.7 kB] 1328s Get:264 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pytest-regressions all 2.5.0+ds-2 [39.2 kB] 1329s Fetched 270 MB in 13s (20.2 MB/s) 1329s Selecting previously unselected package fonts-lato. 1329s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 107156 files and directories currently installed.) 1329s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 1329s Unpacking fonts-lato (2.015-1) ... 1329s Selecting previously unselected package python3-numpy-dev:ppc64el. 1329s Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.3+ds-5_ppc64el.deb ... 1329s Unpacking python3-numpy-dev:ppc64el (1:2.2.3+ds-5) ... 1329s Selecting previously unselected package libblas3:ppc64el. 1329s Preparing to unpack .../002-libblas3_3.12.1-2_ppc64el.deb ... 1329s Unpacking libblas3:ppc64el (3.12.1-2) ... 1329s Selecting previously unselected package libgfortran5:ppc64el. 1329s Preparing to unpack .../003-libgfortran5_15-20250319-1ubuntu1_ppc64el.deb ... 1329s Unpacking libgfortran5:ppc64el (15-20250319-1ubuntu1) ... 1329s Selecting previously unselected package liblapack3:ppc64el. 1329s Preparing to unpack .../004-liblapack3_3.12.1-2_ppc64el.deb ... 1329s Unpacking liblapack3:ppc64el (3.12.1-2) ... 1329s Selecting previously unselected package python3-numpy. 1329s Preparing to unpack .../005-python3-numpy_1%3a2.2.3+ds-5_ppc64el.deb ... 1329s Unpacking python3-numpy (1:2.2.3+ds-5) ... 1330s Selecting previously unselected package libgdk-pixbuf2.0-common. 1330s Preparing to unpack .../006-libgdk-pixbuf2.0-common_2.42.12+dfsg-2_all.deb ... 1330s Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ... 1330s Selecting previously unselected package libjpeg-turbo8:ppc64el. 1330s Preparing to unpack .../007-libjpeg-turbo8_2.1.5-3ubuntu2_ppc64el.deb ... 1330s Unpacking libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ... 1330s Selecting previously unselected package libjpeg8:ppc64el. 1330s Preparing to unpack .../008-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 1330s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 1330s Selecting previously unselected package libdeflate0:ppc64el. 1330s Preparing to unpack .../009-libdeflate0_1.23-1_ppc64el.deb ... 1330s Unpacking libdeflate0:ppc64el (1.23-1) ... 1330s Selecting previously unselected package libjbig0:ppc64el. 1330s Preparing to unpack .../010-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ... 1330s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ... 1330s Selecting previously unselected package liblerc4:ppc64el. 1330s Preparing to unpack .../011-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ... 1330s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 1330s Selecting previously unselected package libsharpyuv0:ppc64el. 1330s Preparing to unpack .../012-libsharpyuv0_1.5.0-0.1_ppc64el.deb ... 1330s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1) ... 1330s Selecting previously unselected package libwebp7:ppc64el. 1330s Preparing to unpack .../013-libwebp7_1.5.0-0.1_ppc64el.deb ... 1330s Unpacking libwebp7:ppc64el (1.5.0-0.1) ... 1330s Selecting previously unselected package libtiff6:ppc64el. 1330s Preparing to unpack .../014-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ... 1330s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 1330s Selecting previously unselected package libgdk-pixbuf-2.0-0:ppc64el. 1330s Preparing to unpack .../015-libgdk-pixbuf-2.0-0_2.42.12+dfsg-2_ppc64el.deb ... 1330s Unpacking libgdk-pixbuf-2.0-0:ppc64el (2.42.12+dfsg-2) ... 1330s Selecting previously unselected package gtk-update-icon-cache. 1330s Preparing to unpack .../016-gtk-update-icon-cache_4.18.2+ds-1_ppc64el.deb ... 1330s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. 1330s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. 1330s Unpacking gtk-update-icon-cache (4.18.2+ds-1) ... 1330s Selecting previously unselected package hicolor-icon-theme. 1330s Preparing to unpack .../017-hicolor-icon-theme_0.18-2_all.deb ... 1330s Unpacking hicolor-icon-theme (0.18-2) ... 1330s Selecting previously unselected package adwaita-icon-theme. 1330s Preparing to unpack .../018-adwaita-icon-theme_48.0-1_all.deb ... 1330s Unpacking adwaita-icon-theme (48.0-1) ... 1330s Selecting previously unselected package at-spi2-common. 1330s Preparing to unpack .../019-at-spi2-common_2.56.0-2_all.deb ... 1330s Unpacking at-spi2-common (2.56.0-2) ... 1330s Selecting previously unselected package libaec0:ppc64el. 1330s Preparing to unpack .../020-libaec0_1.1.3-1_ppc64el.deb ... 1330s Unpacking libaec0:ppc64el (1.1.3-1) ... 1330s Selecting previously unselected package libsz2:ppc64el. 1330s Preparing to unpack .../021-libsz2_1.1.3-1_ppc64el.deb ... 1330s Unpacking libsz2:ppc64el (1.1.3-1) ... 1330s Selecting previously unselected package libhdf5-310:ppc64el. 1330s Preparing to unpack .../022-libhdf5-310_1.14.5+repack-3_ppc64el.deb ... 1330s Unpacking libhdf5-310:ppc64el (1.14.5+repack-3) ... 1330s Selecting previously unselected package libhdf5-hl-310:ppc64el. 1330s Preparing to unpack .../023-libhdf5-hl-310_1.14.5+repack-3_ppc64el.deb ... 1330s Unpacking libhdf5-hl-310:ppc64el (1.14.5+repack-3) ... 1330s Selecting previously unselected package liblzf1:ppc64el. 1330s Preparing to unpack .../024-liblzf1_3.6-4_ppc64el.deb ... 1330s Unpacking liblzf1:ppc64el (3.6-4) ... 1330s Selecting previously unselected package python3-h5py-serial. 1330s Preparing to unpack .../025-python3-h5py-serial_3.13.0-1_ppc64el.deb ... 1330s Unpacking python3-h5py-serial (3.13.0-1) ... 1330s Selecting previously unselected package python3-h5py. 1330s Preparing to unpack .../026-python3-h5py_3.13.0-1_all.deb ... 1330s Unpacking python3-h5py (3.13.0-1) ... 1330s Selecting previously unselected package libgomp1:ppc64el. 1330s Preparing to unpack .../027-libgomp1_15-20250319-1ubuntu1_ppc64el.deb ... 1330s Unpacking libgomp1:ppc64el (15-20250319-1ubuntu1) ... 1330s Selecting previously unselected package libevent-pthreads-2.1-7t64:ppc64el. 1330s Preparing to unpack .../028-libevent-pthreads-2.1-7t64_2.1.12-stable-10_ppc64el.deb ... 1330s Unpacking libevent-pthreads-2.1-7t64:ppc64el (2.1.12-stable-10) ... 1330s Selecting previously unselected package librdmacm1t64:ppc64el. 1330s Preparing to unpack .../029-librdmacm1t64_56.0-3ubuntu1_ppc64el.deb ... 1330s Unpacking librdmacm1t64:ppc64el (56.0-3ubuntu1) ... 1330s Selecting previously unselected package libfabric1:ppc64el. 1330s Preparing to unpack .../030-libfabric1_1.17.0-3.1_ppc64el.deb ... 1330s Unpacking libfabric1:ppc64el (1.17.0-3.1) ... 1330s Selecting previously unselected package libhwloc15:ppc64el. 1330s Preparing to unpack .../031-libhwloc15_2.12.0-1_ppc64el.deb ... 1330s Unpacking libhwloc15:ppc64el (2.12.0-1) ... 1330s Selecting previously unselected package libmunge2:ppc64el. 1330s Preparing to unpack .../032-libmunge2_0.5.16-1_ppc64el.deb ... 1330s Unpacking libmunge2:ppc64el (0.5.16-1) ... 1330s Selecting previously unselected package libpciaccess0:ppc64el. 1330s Preparing to unpack .../033-libpciaccess0_0.17-3build1_ppc64el.deb ... 1330s Unpacking libpciaccess0:ppc64el (0.17-3build1) ... 1330s Selecting previously unselected package libxnvctrl0:ppc64el. 1330s Preparing to unpack .../034-libxnvctrl0_510.47.03-0ubuntu4_ppc64el.deb ... 1330s Unpacking libxnvctrl0:ppc64el (510.47.03-0ubuntu4) ... 1330s Selecting previously unselected package ocl-icd-libopencl1:ppc64el. 1330s Preparing to unpack .../035-ocl-icd-libopencl1_2.3.2-1build1_ppc64el.deb ... 1330s Unpacking ocl-icd-libopencl1:ppc64el (2.3.2-1build1) ... 1330s Selecting previously unselected package libhwloc-plugins:ppc64el. 1330s Preparing to unpack .../036-libhwloc-plugins_2.12.0-1_ppc64el.deb ... 1330s Unpacking libhwloc-plugins:ppc64el (2.12.0-1) ... 1330s Selecting previously unselected package libpmix2t64:ppc64el. 1330s Preparing to unpack .../037-libpmix2t64_5.0.6-5_ppc64el.deb ... 1330s Unpacking libpmix2t64:ppc64el (5.0.6-5) ... 1330s Selecting previously unselected package libllvm17t64:ppc64el. 1330s Preparing to unpack .../038-libllvm17t64_1%3a17.0.6-21_ppc64el.deb ... 1330s Unpacking libllvm17t64:ppc64el (1:17.0.6-21) ... 1331s Selecting previously unselected package libamd-comgr2:ppc64el. 1331s Preparing to unpack .../039-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_ppc64el.deb ... 1331s Unpacking libamd-comgr2:ppc64el (6.0+git20231212.4510c28+dfsg-3build2) ... 1331s Selecting previously unselected package libhsakmt1:ppc64el. 1331s Preparing to unpack .../040-libhsakmt1_5.7.0-1build1_ppc64el.deb ... 1331s Unpacking libhsakmt1:ppc64el (5.7.0-1build1) ... 1331s Selecting previously unselected package libhsa-runtime64-1. 1331s Preparing to unpack .../041-libhsa-runtime64-1_5.7.1-2build1_ppc64el.deb ... 1331s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 1331s Selecting previously unselected package libamdhip64-5. 1331s Preparing to unpack .../042-libamdhip64-5_5.7.1-5build1_ppc64el.deb ... 1331s Unpacking libamdhip64-5 (5.7.1-5build1) ... 1331s Selecting previously unselected package libibumad3:ppc64el. 1331s Preparing to unpack .../043-libibumad3_56.0-3ubuntu1_ppc64el.deb ... 1331s Unpacking libibumad3:ppc64el (56.0-3ubuntu1) ... 1331s Selecting previously unselected package libibmad5:ppc64el. 1331s Preparing to unpack .../044-libibmad5_56.0-3ubuntu1_ppc64el.deb ... 1331s Unpacking libibmad5:ppc64el (56.0-3ubuntu1) ... 1331s Selecting previously unselected package libucx0:ppc64el. 1331s Preparing to unpack .../045-libucx0_1.18.1+ds-2_ppc64el.deb ... 1331s Unpacking libucx0:ppc64el (1.18.1+ds-2) ... 1331s Selecting previously unselected package libopenmpi40:ppc64el. 1331s Preparing to unpack .../046-libopenmpi40_5.0.7-1_ppc64el.deb ... 1331s Unpacking libopenmpi40:ppc64el (5.0.7-1) ... 1331s Selecting previously unselected package libhdf5-openmpi-310:ppc64el. 1331s Preparing to unpack .../047-libhdf5-openmpi-310_1.14.5+repack-3_ppc64el.deb ... 1331s Unpacking libhdf5-openmpi-310:ppc64el (1.14.5+repack-3) ... 1331s Selecting previously unselected package bitshuffle. 1331s Preparing to unpack .../048-bitshuffle_0.5.2-1build2_ppc64el.deb ... 1331s Unpacking bitshuffle (0.5.2-1build2) ... 1331s Selecting previously unselected package libtcl8.6:ppc64el. 1331s Preparing to unpack .../049-libtcl8.6_8.6.16+dfsg-1_ppc64el.deb ... 1331s Unpacking libtcl8.6:ppc64el (8.6.16+dfsg-1) ... 1332s Selecting previously unselected package fonts-dejavu-mono. 1332s Preparing to unpack .../050-fonts-dejavu-mono_2.37-8_all.deb ... 1332s Unpacking fonts-dejavu-mono (2.37-8) ... 1332s Selecting previously unselected package fonts-dejavu-core. 1332s Preparing to unpack .../051-fonts-dejavu-core_2.37-8_all.deb ... 1332s Unpacking fonts-dejavu-core (2.37-8) ... 1332s Selecting previously unselected package fontconfig-config. 1332s Preparing to unpack .../052-fontconfig-config_2.15.0-2.1ubuntu1_ppc64el.deb ... 1332s Unpacking fontconfig-config (2.15.0-2.1ubuntu1) ... 1332s Selecting previously unselected package libfontconfig1:ppc64el. 1332s Preparing to unpack .../053-libfontconfig1_2.15.0-2.1ubuntu1_ppc64el.deb ... 1332s Unpacking libfontconfig1:ppc64el (2.15.0-2.1ubuntu1) ... 1332s Selecting previously unselected package libxrender1:ppc64el. 1332s Preparing to unpack .../054-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 1332s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 1332s Selecting previously unselected package libxft2:ppc64el. 1332s Preparing to unpack .../055-libxft2_2.3.6-1build1_ppc64el.deb ... 1332s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 1332s Selecting previously unselected package x11-common. 1332s Preparing to unpack .../056-x11-common_1%3a7.7+23ubuntu3_all.deb ... 1332s Unpacking x11-common (1:7.7+23ubuntu3) ... 1332s Selecting previously unselected package libxss1:ppc64el. 1332s Preparing to unpack .../057-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 1332s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 1332s Selecting previously unselected package libtk8.6:ppc64el. 1332s Preparing to unpack .../058-libtk8.6_8.6.16-1_ppc64el.deb ... 1332s Unpacking libtk8.6:ppc64el (8.6.16-1) ... 1332s Selecting previously unselected package tk8.6-blt2.5. 1332s Preparing to unpack .../059-tk8.6-blt2.5_2.5.3+dfsg-8_ppc64el.deb ... 1332s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 1332s Selecting previously unselected package blt. 1332s Preparing to unpack .../060-blt_2.5.3+dfsg-8_ppc64el.deb ... 1332s Unpacking blt (2.5.3+dfsg-8) ... 1332s Selecting previously unselected package libdconf1:ppc64el. 1332s Preparing to unpack .../061-libdconf1_0.40.0-5_ppc64el.deb ... 1332s Unpacking libdconf1:ppc64el (0.40.0-5) ... 1332s Selecting previously unselected package dconf-service. 1332s Preparing to unpack .../062-dconf-service_0.40.0-5_ppc64el.deb ... 1332s Unpacking dconf-service (0.40.0-5) ... 1332s Selecting previously unselected package dconf-gsettings-backend:ppc64el. 1332s Preparing to unpack .../063-dconf-gsettings-backend_0.40.0-5_ppc64el.deb ... 1332s Unpacking dconf-gsettings-backend:ppc64el (0.40.0-5) ... 1332s Selecting previously unselected package fontconfig. 1332s Preparing to unpack .../064-fontconfig_2.15.0-2.1ubuntu1_ppc64el.deb ... 1332s Unpacking fontconfig (2.15.0-2.1ubuntu1) ... 1332s Selecting previously unselected package fonts-font-awesome. 1332s Preparing to unpack .../065-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 1332s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 1332s Selecting previously unselected package fonts-lyx. 1332s Preparing to unpack .../066-fonts-lyx_2.4.3-1_all.deb ... 1332s Unpacking fonts-lyx (2.4.3-1) ... 1332s Selecting previously unselected package libann-cctbx0. 1332s Preparing to unpack .../067-libann-cctbx0_1.1.2+doc-9build1_ppc64el.deb ... 1332s Unpacking libann-cctbx0 (1.1.2+doc-9build1) ... 1332s Selecting previously unselected package libann-cctbx-dev. 1332s Preparing to unpack .../068-libann-cctbx-dev_1.1.2+doc-9build1_ppc64el.deb ... 1332s Unpacking libann-cctbx-dev (1.1.2+doc-9build1) ... 1332s Selecting previously unselected package libantlr3c-3.4-0:ppc64el. 1332s Preparing to unpack .../069-libantlr3c-3.4-0_3.4+dfsg-4build2_ppc64el.deb ... 1332s Unpacking libantlr3c-3.4-0:ppc64el (3.4+dfsg-4build2) ... 1332s Selecting previously unselected package libasan8:ppc64el. 1332s Preparing to unpack .../070-libasan8_15-20250319-1ubuntu1_ppc64el.deb ... 1332s Unpacking libasan8:ppc64el (15-20250319-1ubuntu1) ... 1332s Selecting previously unselected package libatk1.0-0t64:ppc64el. 1332s Preparing to unpack .../071-libatk1.0-0t64_2.56.0-2_ppc64el.deb ... 1332s Unpacking libatk1.0-0t64:ppc64el (2.56.0-2) ... 1332s Selecting previously unselected package libxi6:ppc64el. 1332s Preparing to unpack .../072-libxi6_2%3a1.8.2-1_ppc64el.deb ... 1332s Unpacking libxi6:ppc64el (2:1.8.2-1) ... 1332s Selecting previously unselected package libatspi2.0-0t64:ppc64el. 1332s Preparing to unpack .../073-libatspi2.0-0t64_2.56.0-2_ppc64el.deb ... 1332s Unpacking libatspi2.0-0t64:ppc64el (2.56.0-2) ... 1332s Selecting previously unselected package libatk-bridge2.0-0t64:ppc64el. 1332s Preparing to unpack .../074-libatk-bridge2.0-0t64_2.56.0-2_ppc64el.deb ... 1332s Unpacking libatk-bridge2.0-0t64:ppc64el (2.56.0-2) ... 1332s Selecting previously unselected package libavahi-common-data:ppc64el. 1332s Preparing to unpack .../075-libavahi-common-data_0.8-16ubuntu2_ppc64el.deb ... 1332s Unpacking libavahi-common-data:ppc64el (0.8-16ubuntu2) ... 1332s Selecting previously unselected package libavahi-common3:ppc64el. 1332s Preparing to unpack .../076-libavahi-common3_0.8-16ubuntu2_ppc64el.deb ... 1332s Unpacking libavahi-common3:ppc64el (0.8-16ubuntu2) ... 1332s Selecting previously unselected package libavahi-client3:ppc64el. 1332s Preparing to unpack .../077-libavahi-client3_0.8-16ubuntu2_ppc64el.deb ... 1332s Unpacking libavahi-client3:ppc64el (0.8-16ubuntu2) ... 1332s Selecting previously unselected package libboost-python1.83.0. 1332s Preparing to unpack .../078-libboost-python1.83.0_1.83.0-4.1ubuntu2_ppc64el.deb ... 1332s Unpacking libboost-python1.83.0 (1.83.0-4.1ubuntu2) ... 1332s Selecting previously unselected package libboost-numpy1.83.0. 1332s Preparing to unpack .../079-libboost-numpy1.83.0_1.83.0-4.1ubuntu2_ppc64el.deb ... 1332s Unpacking libboost-numpy1.83.0 (1.83.0-4.1ubuntu2) ... 1332s Selecting previously unselected package libitm1:ppc64el. 1332s Preparing to unpack .../080-libitm1_15-20250319-1ubuntu1_ppc64el.deb ... 1332s Unpacking libitm1:ppc64el (15-20250319-1ubuntu1) ... 1332s Selecting previously unselected package liblsan0:ppc64el. 1332s Preparing to unpack .../081-liblsan0_15-20250319-1ubuntu1_ppc64el.deb ... 1332s Unpacking liblsan0:ppc64el (15-20250319-1ubuntu1) ... 1332s Selecting previously unselected package libtsan2:ppc64el. 1332s Preparing to unpack .../082-libtsan2_15-20250319-1ubuntu1_ppc64el.deb ... 1332s Unpacking libtsan2:ppc64el (15-20250319-1ubuntu1) ... 1332s Selecting previously unselected package libubsan1:ppc64el. 1332s Preparing to unpack .../083-libubsan1_15-20250319-1ubuntu1_ppc64el.deb ... 1332s Unpacking libubsan1:ppc64el (15-20250319-1ubuntu1) ... 1332s Selecting previously unselected package libquadmath0:ppc64el. 1332s Preparing to unpack .../084-libquadmath0_15-20250319-1ubuntu1_ppc64el.deb ... 1332s Unpacking libquadmath0:ppc64el (15-20250319-1ubuntu1) ... 1332s Selecting previously unselected package libgcc-14-dev:ppc64el. 1332s Preparing to unpack .../085-libgcc-14-dev_14.2.0-19ubuntu1_ppc64el.deb ... 1332s Unpacking libgcc-14-dev:ppc64el (14.2.0-19ubuntu1) ... 1333s Selecting previously unselected package libstdc++-14-dev:ppc64el. 1333s Preparing to unpack .../086-libstdc++-14-dev_14.2.0-19ubuntu1_ppc64el.deb ... 1333s Unpacking libstdc++-14-dev:ppc64el (14.2.0-19ubuntu1) ... 1333s Selecting previously unselected package libboost1.83-dev:ppc64el. 1333s Preparing to unpack .../087-libboost1.83-dev_1.83.0-4.1ubuntu2_ppc64el.deb ... 1333s Unpacking libboost1.83-dev:ppc64el (1.83.0-4.1ubuntu2) ... 1335s Selecting previously unselected package libexpat1-dev:ppc64el. 1335s Preparing to unpack .../088-libexpat1-dev_2.6.4-1_ppc64el.deb ... 1335s Unpacking libexpat1-dev:ppc64el (2.6.4-1) ... 1335s Selecting previously unselected package zlib1g-dev:ppc64el. 1335s Preparing to unpack .../089-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_ppc64el.deb ... 1335s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 1335s Selecting previously unselected package libpython3.13-dev:ppc64el. 1335s Preparing to unpack .../090-libpython3.13-dev_3.13.2-2_ppc64el.deb ... 1335s Unpacking libpython3.13-dev:ppc64el (3.13.2-2) ... 1335s Selecting previously unselected package libpython3-dev:ppc64el. 1335s Preparing to unpack .../091-libpython3-dev_3.13.2-2_ppc64el.deb ... 1335s Unpacking libpython3-dev:ppc64el (3.13.2-2) ... 1335s Selecting previously unselected package python3.13-dev. 1335s Preparing to unpack .../092-python3.13-dev_3.13.2-2_ppc64el.deb ... 1335s Unpacking python3.13-dev (3.13.2-2) ... 1335s Selecting previously unselected package libjs-jquery. 1335s Preparing to unpack .../093-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 1335s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1335s Selecting previously unselected package libjs-underscore. 1335s Preparing to unpack .../094-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 1335s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 1335s Selecting previously unselected package libjs-sphinxdoc. 1335s Preparing to unpack .../095-libjs-sphinxdoc_8.1.3-5_all.deb ... 1335s Unpacking libjs-sphinxdoc (8.1.3-5) ... 1335s Selecting previously unselected package python3-dev. 1335s Preparing to unpack .../096-python3-dev_3.13.2-2_ppc64el.deb ... 1335s Unpacking python3-dev (3.13.2-2) ... 1335s Selecting previously unselected package libboost-python1.83-dev. 1335s Preparing to unpack .../097-libboost-python1.83-dev_1.83.0-4.1ubuntu2_ppc64el.deb ... 1335s Unpacking libboost-python1.83-dev (1.83.0-4.1ubuntu2) ... 1335s Selecting previously unselected package libboost-python-dev. 1335s Preparing to unpack .../098-libboost-python-dev_1.83.0.2ubuntu1_ppc64el.deb ... 1335s Unpacking libboost-python-dev (1.83.0.2ubuntu1) ... 1335s Selecting previously unselected package libboost-thread1.83.0:ppc64el. 1335s Preparing to unpack .../099-libboost-thread1.83.0_1.83.0-4.1ubuntu2_ppc64el.deb ... 1335s Unpacking libboost-thread1.83.0:ppc64el (1.83.0-4.1ubuntu2) ... 1335s Selecting previously unselected package libboost-timer1.83.0:ppc64el. 1335s Preparing to unpack .../100-libboost-timer1.83.0_1.83.0-4.1ubuntu2_ppc64el.deb ... 1335s Unpacking libboost-timer1.83.0:ppc64el (1.83.0-4.1ubuntu2) ... 1335s Selecting previously unselected package libpixman-1-0:ppc64el. 1335s Preparing to unpack .../101-libpixman-1-0_0.44.0-3_ppc64el.deb ... 1335s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ... 1335s Selecting previously unselected package libxcb-render0:ppc64el. 1335s Preparing to unpack .../102-libxcb-render0_1.17.0-2_ppc64el.deb ... 1335s Unpacking libxcb-render0:ppc64el (1.17.0-2) ... 1335s Selecting previously unselected package libxcb-shm0:ppc64el. 1335s Preparing to unpack .../103-libxcb-shm0_1.17.0-2_ppc64el.deb ... 1335s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ... 1335s Selecting previously unselected package libcairo2:ppc64el. 1335s Preparing to unpack .../104-libcairo2_1.18.4-1_ppc64el.deb ... 1335s Unpacking libcairo2:ppc64el (1.18.4-1) ... 1335s Selecting previously unselected package libcairo-gobject2:ppc64el. 1335s Preparing to unpack .../105-libcairo-gobject2_1.18.4-1_ppc64el.deb ... 1335s Unpacking libcairo-gobject2:ppc64el (1.18.4-1) ... 1335s Selecting previously unselected package libcbf1t64:ppc64el. 1335s Preparing to unpack .../106-libcbf1t64_0.9.7+dfsg1-5build1_ppc64el.deb ... 1335s Unpacking libcbf1t64:ppc64el (0.9.7+dfsg1-5build1) ... 1335s Selecting previously unselected package libccp4-data. 1335s Preparing to unpack .../107-libccp4-data_8.0.0-4_all.deb ... 1335s Unpacking libccp4-data (8.0.0-4) ... 1335s Selecting previously unselected package libccp4c0t64:ppc64el. 1335s Preparing to unpack .../108-libccp4c0t64_8.0.0-4_ppc64el.deb ... 1335s Unpacking libccp4c0t64:ppc64el (8.0.0-4) ... 1335s Selecting previously unselected package libmmdb2-0:ppc64el. 1335s Preparing to unpack .../109-libmmdb2-0_2.0.22-1_ppc64el.deb ... 1335s Unpacking libmmdb2-0:ppc64el (2.0.22-1) ... 1335s Selecting previously unselected package libccp4f0t64:ppc64el. 1335s Preparing to unpack .../110-libccp4f0t64_8.0.0-4_ppc64el.deb ... 1335s Unpacking libccp4f0t64:ppc64el (8.0.0-4) ... 1335s Selecting previously unselected package libccp4-dev:ppc64el. 1335s Preparing to unpack .../111-libccp4-dev_8.0.0-4_ppc64el.deb ... 1335s Unpacking libccp4-dev:ppc64el (8.0.0-4) ... 1335s Selecting previously unselected package libcctbx0. 1335s Preparing to unpack .../112-libcctbx0_2024.10+ds2+~3.22.1+ds1-4build2_ppc64el.deb ... 1335s Unpacking libcctbx0 (2024.10+ds2+~3.22.1+ds1-4build2) ... 1335s Selecting previously unselected package libcctbx-dev. 1335s Preparing to unpack .../113-libcctbx-dev_2024.10+ds2+~3.22.1+ds1-4build2_ppc64el.deb ... 1335s Unpacking libcctbx-dev (2024.10+ds2+~3.22.1+ds1-4build2) ... 1335s Selecting previously unselected package liblcms2-2:ppc64el. 1335s Preparing to unpack .../114-liblcms2-2_2.16-2_ppc64el.deb ... 1335s Unpacking liblcms2-2:ppc64el (2.16-2) ... 1335s Selecting previously unselected package libcolord2:ppc64el. 1335s Preparing to unpack .../115-libcolord2_1.4.7-3_ppc64el.deb ... 1335s Unpacking libcolord2:ppc64el (1.4.7-3) ... 1335s Selecting previously unselected package libcups2t64:ppc64el. 1335s Preparing to unpack .../116-libcups2t64_2.4.11-0ubuntu2_ppc64el.deb ... 1335s Unpacking libcups2t64:ppc64el (2.4.11-0ubuntu2) ... 1336s Selecting previously unselected package libdatrie1:ppc64el. 1336s Preparing to unpack .../117-libdatrie1_0.2.13-3build1_ppc64el.deb ... 1336s Unpacking libdatrie1:ppc64el (0.2.13-3build1) ... 1336s Selecting previously unselected package libdouble-conversion3:ppc64el. 1336s Preparing to unpack .../118-libdouble-conversion3_3.3.1-1_ppc64el.deb ... 1336s Unpacking libdouble-conversion3:ppc64el (3.3.1-1) ... 1336s Selecting previously unselected package libwayland-server0:ppc64el. 1336s Preparing to unpack .../119-libwayland-server0_1.23.1-3_ppc64el.deb ... 1336s Unpacking libwayland-server0:ppc64el (1.23.1-3) ... 1336s Selecting previously unselected package libx11-xcb1:ppc64el. 1336s Preparing to unpack .../120-libx11-xcb1_2%3a1.8.10-2_ppc64el.deb ... 1336s Unpacking libx11-xcb1:ppc64el (2:1.8.10-2) ... 1336s Selecting previously unselected package libxcb-dri3-0:ppc64el. 1336s Preparing to unpack .../121-libxcb-dri3-0_1.17.0-2_ppc64el.deb ... 1336s Unpacking libxcb-dri3-0:ppc64el (1.17.0-2) ... 1336s Selecting previously unselected package libxcb-present0:ppc64el. 1336s Preparing to unpack .../122-libxcb-present0_1.17.0-2_ppc64el.deb ... 1336s Unpacking libxcb-present0:ppc64el (1.17.0-2) ... 1336s Selecting previously unselected package libxcb-randr0:ppc64el. 1336s Preparing to unpack .../123-libxcb-randr0_1.17.0-2_ppc64el.deb ... 1336s Unpacking libxcb-randr0:ppc64el (1.17.0-2) ... 1336s Selecting previously unselected package libxcb-sync1:ppc64el. 1336s Preparing to unpack .../124-libxcb-sync1_1.17.0-2_ppc64el.deb ... 1336s Unpacking libxcb-sync1:ppc64el (1.17.0-2) ... 1336s Selecting previously unselected package libxcb-xfixes0:ppc64el. 1336s Preparing to unpack .../125-libxcb-xfixes0_1.17.0-2_ppc64el.deb ... 1336s Unpacking libxcb-xfixes0:ppc64el (1.17.0-2) ... 1336s Selecting previously unselected package libxshmfence1:ppc64el. 1336s Preparing to unpack .../126-libxshmfence1_1.3-1build5_ppc64el.deb ... 1336s Unpacking libxshmfence1:ppc64el (1.3-1build5) ... 1336s Selecting previously unselected package mesa-libgallium:ppc64el. 1336s Preparing to unpack .../127-mesa-libgallium_25.0.1-2ubuntu2_ppc64el.deb ... 1336s Unpacking mesa-libgallium:ppc64el (25.0.1-2ubuntu2) ... 1336s Selecting previously unselected package libgbm1:ppc64el. 1336s Preparing to unpack .../128-libgbm1_25.0.1-2ubuntu2_ppc64el.deb ... 1336s Unpacking libgbm1:ppc64el (25.0.1-2ubuntu2) ... 1336s Selecting previously unselected package libwayland-client0:ppc64el. 1336s Preparing to unpack .../129-libwayland-client0_1.23.1-3_ppc64el.deb ... 1336s Unpacking libwayland-client0:ppc64el (1.23.1-3) ... 1336s Selecting previously unselected package libegl-mesa0:ppc64el. 1336s Preparing to unpack .../130-libegl-mesa0_25.0.1-2ubuntu2_ppc64el.deb ... 1336s Unpacking libegl-mesa0:ppc64el (25.0.1-2ubuntu2) ... 1336s Selecting previously unselected package libepoxy0:ppc64el. 1336s Preparing to unpack .../131-libepoxy0_1.5.10-2_ppc64el.deb ... 1336s Unpacking libepoxy0:ppc64el (1.5.10-2) ... 1336s Selecting previously unselected package libvulkan1:ppc64el. 1336s Preparing to unpack .../132-libvulkan1_1.4.304.0-1_ppc64el.deb ... 1336s Unpacking libvulkan1:ppc64el (1.4.304.0-1) ... 1336s Selecting previously unselected package libgl1-mesa-dri:ppc64el. 1336s Preparing to unpack .../133-libgl1-mesa-dri_25.0.1-2ubuntu2_ppc64el.deb ... 1336s Unpacking libgl1-mesa-dri:ppc64el (25.0.1-2ubuntu2) ... 1336s Selecting previously unselected package libglvnd0:ppc64el. 1336s Preparing to unpack .../134-libglvnd0_1.7.0-1build1_ppc64el.deb ... 1336s Unpacking libglvnd0:ppc64el (1.7.0-1build1) ... 1336s Selecting previously unselected package libxcb-glx0:ppc64el. 1336s Preparing to unpack .../135-libxcb-glx0_1.17.0-2_ppc64el.deb ... 1336s Unpacking libxcb-glx0:ppc64el (1.17.0-2) ... 1336s Selecting previously unselected package libxxf86vm1:ppc64el. 1336s Preparing to unpack .../136-libxxf86vm1_1%3a1.1.4-1build4_ppc64el.deb ... 1336s Unpacking libxxf86vm1:ppc64el (1:1.1.4-1build4) ... 1336s Selecting previously unselected package libglx-mesa0:ppc64el. 1336s Preparing to unpack .../137-libglx-mesa0_25.0.1-2ubuntu2_ppc64el.deb ... 1336s Unpacking libglx-mesa0:ppc64el (25.0.1-2ubuntu2) ... 1336s Selecting previously unselected package libglx0:ppc64el. 1336s Preparing to unpack .../138-libglx0_1.7.0-1build1_ppc64el.deb ... 1336s Unpacking libglx0:ppc64el (1.7.0-1build1) ... 1336s Selecting previously unselected package libgl1:ppc64el. 1336s Preparing to unpack .../139-libgl1_1.7.0-1build1_ppc64el.deb ... 1336s Unpacking libgl1:ppc64el (1.7.0-1build1) ... 1336s Selecting previously unselected package libglew2.2:ppc64el. 1336s Preparing to unpack .../140-libglew2.2_2.2.0-4build1_ppc64el.deb ... 1336s Unpacking libglew2.2:ppc64el (2.2.0-4build1) ... 1336s Selecting previously unselected package libglut3.12:ppc64el. 1336s Preparing to unpack .../141-libglut3.12_3.4.0-4_ppc64el.deb ... 1336s Unpacking libglut3.12:ppc64el (3.4.0-4) ... 1336s Selecting previously unselected package libgraphite2-3:ppc64el. 1336s Preparing to unpack .../142-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 1336s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 1336s Selecting previously unselected package libharfbuzz0b:ppc64el. 1336s Preparing to unpack .../143-libharfbuzz0b_10.2.0-1_ppc64el.deb ... 1336s Unpacking libharfbuzz0b:ppc64el (10.2.0-1) ... 1336s Selecting previously unselected package libthai-data. 1336s Preparing to unpack .../144-libthai-data_0.1.29-2build1_all.deb ... 1336s Unpacking libthai-data (0.1.29-2build1) ... 1336s Selecting previously unselected package libthai0:ppc64el. 1336s Preparing to unpack .../145-libthai0_0.1.29-2build1_ppc64el.deb ... 1336s Unpacking libthai0:ppc64el (0.1.29-2build1) ... 1336s Selecting previously unselected package libpango-1.0-0:ppc64el. 1336s Preparing to unpack .../146-libpango-1.0-0_1.56.3-1_ppc64el.deb ... 1336s Unpacking libpango-1.0-0:ppc64el (1.56.3-1) ... 1336s Selecting previously unselected package libpangoft2-1.0-0:ppc64el. 1336s Preparing to unpack .../147-libpangoft2-1.0-0_1.56.3-1_ppc64el.deb ... 1336s Unpacking libpangoft2-1.0-0:ppc64el (1.56.3-1) ... 1336s Selecting previously unselected package libpangocairo-1.0-0:ppc64el. 1336s Preparing to unpack .../148-libpangocairo-1.0-0_1.56.3-1_ppc64el.deb ... 1336s Unpacking libpangocairo-1.0-0:ppc64el (1.56.3-1) ... 1336s Selecting previously unselected package libwayland-cursor0:ppc64el. 1336s Preparing to unpack .../149-libwayland-cursor0_1.23.1-3_ppc64el.deb ... 1336s Unpacking libwayland-cursor0:ppc64el (1.23.1-3) ... 1336s Selecting previously unselected package libwayland-egl1:ppc64el. 1336s Preparing to unpack .../150-libwayland-egl1_1.23.1-3_ppc64el.deb ... 1336s Unpacking libwayland-egl1:ppc64el (1.23.1-3) ... 1336s Selecting previously unselected package libxcomposite1:ppc64el. 1336s Preparing to unpack .../151-libxcomposite1_1%3a0.4.6-1_ppc64el.deb ... 1336s Unpacking libxcomposite1:ppc64el (1:0.4.6-1) ... 1336s Selecting previously unselected package libxfixes3:ppc64el. 1336s Preparing to unpack .../152-libxfixes3_1%3a6.0.0-2build1_ppc64el.deb ... 1336s Unpacking libxfixes3:ppc64el (1:6.0.0-2build1) ... 1336s Selecting previously unselected package libxcursor1:ppc64el. 1336s Preparing to unpack .../153-libxcursor1_1%3a1.2.3-1_ppc64el.deb ... 1336s Unpacking libxcursor1:ppc64el (1:1.2.3-1) ... 1336s Selecting previously unselected package libxdamage1:ppc64el. 1336s Preparing to unpack .../154-libxdamage1_1%3a1.1.6-1build1_ppc64el.deb ... 1336s Unpacking libxdamage1:ppc64el (1:1.1.6-1build1) ... 1336s Selecting previously unselected package libxinerama1:ppc64el. 1336s Preparing to unpack .../155-libxinerama1_2%3a1.1.4-3build1_ppc64el.deb ... 1336s Unpacking libxinerama1:ppc64el (2:1.1.4-3build1) ... 1336s Selecting previously unselected package libxrandr2:ppc64el. 1336s Preparing to unpack .../156-libxrandr2_2%3a1.5.4-1_ppc64el.deb ... 1336s Unpacking libxrandr2:ppc64el (2:1.5.4-1) ... 1336s Selecting previously unselected package libgtk-3-common. 1336s Preparing to unpack .../157-libgtk-3-common_3.24.49-2ubuntu1_all.deb ... 1336s Unpacking libgtk-3-common (3.24.49-2ubuntu1) ... 1336s Selecting previously unselected package libgtk-3-0t64:ppc64el. 1336s Preparing to unpack .../158-libgtk-3-0t64_3.24.49-2ubuntu1_ppc64el.deb ... 1336s Unpacking libgtk-3-0t64:ppc64el (3.24.49-2ubuntu1) ... 1337s Selecting previously unselected package libice6:ppc64el. 1337s Preparing to unpack .../159-libice6_2%3a1.1.1-1_ppc64el.deb ... 1337s Unpacking libice6:ppc64el (2:1.1.1-1) ... 1337s Selecting previously unselected package libimagequant0:ppc64el. 1337s Preparing to unpack .../160-libimagequant0_2.18.0-1build1_ppc64el.deb ... 1337s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 1337s Selecting previously unselected package libwacom-common. 1337s Preparing to unpack .../161-libwacom-common_2.14.0-1_all.deb ... 1337s Unpacking libwacom-common (2.14.0-1) ... 1337s Selecting previously unselected package libwacom9:ppc64el. 1337s Preparing to unpack .../162-libwacom9_2.14.0-1_ppc64el.deb ... 1337s Unpacking libwacom9:ppc64el (2.14.0-1) ... 1337s Selecting previously unselected package libinput-bin. 1337s Preparing to unpack .../163-libinput-bin_1.27.1-1_ppc64el.deb ... 1337s Unpacking libinput-bin (1.27.1-1) ... 1337s Selecting previously unselected package libmtdev1t64:ppc64el. 1337s Preparing to unpack .../164-libmtdev1t64_1.1.7-1_ppc64el.deb ... 1337s Unpacking libmtdev1t64:ppc64el (1.1.7-1) ... 1337s Selecting previously unselected package libinput10:ppc64el. 1337s Preparing to unpack .../165-libinput10_1.27.1-1_ppc64el.deb ... 1337s Unpacking libinput10:ppc64el (1.27.1-1) ... 1337s Selecting previously unselected package libjs-jquery-ui. 1337s Preparing to unpack .../166-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 1337s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 1337s Selecting previously unselected package liblbfgsb0:ppc64el. 1337s Preparing to unpack .../167-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ... 1337s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 1337s Selecting previously unselected package libmd4c0:ppc64el. 1337s Preparing to unpack .../168-libmd4c0_0.5.2-2_ppc64el.deb ... 1337s Unpacking libmd4c0:ppc64el (0.5.2-2) ... 1337s Selecting previously unselected package libnetcdf22:ppc64el. 1337s Preparing to unpack .../169-libnetcdf22_1%3a4.9.3-1_ppc64el.deb ... 1337s Unpacking libnetcdf22:ppc64el (1:4.9.3-1) ... 1337s Selecting previously unselected package libnotify4:ppc64el. 1337s Preparing to unpack .../170-libnotify4_0.8.4-1_ppc64el.deb ... 1337s Unpacking libnotify4:ppc64el (0.8.4-1) ... 1337s Selecting previously unselected package libpcre2-16-0:ppc64el. 1337s Preparing to unpack .../171-libpcre2-16-0_10.45-1_ppc64el.deb ... 1337s Unpacking libpcre2-16-0:ppc64el (10.45-1) ... 1337s Selecting previously unselected package libpcre2-32-0:ppc64el. 1337s Preparing to unpack .../172-libpcre2-32-0_10.45-1_ppc64el.deb ... 1337s Unpacking libpcre2-32-0:ppc64el (10.45-1) ... 1337s Selecting previously unselected package libqhull-r8.0:ppc64el. 1337s Preparing to unpack .../173-libqhull-r8.0_2020.2-6build1_ppc64el.deb ... 1337s Unpacking libqhull-r8.0:ppc64el (2020.2-6build1) ... 1337s Selecting previously unselected package libqt5core5t64:ppc64el. 1337s Preparing to unpack .../174-libqt5core5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ... 1337s Unpacking libqt5core5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 1337s Selecting previously unselected package libqt5dbus5t64:ppc64el. 1337s Preparing to unpack .../175-libqt5dbus5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ... 1337s Unpacking libqt5dbus5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 1337s Selecting previously unselected package libegl1:ppc64el. 1337s Preparing to unpack .../176-libegl1_1.7.0-1build1_ppc64el.deb ... 1337s Unpacking libegl1:ppc64el (1.7.0-1build1) ... 1337s Selecting previously unselected package libqt5network5t64:ppc64el. 1337s Preparing to unpack .../177-libqt5network5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ... 1337s Unpacking libqt5network5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 1337s Selecting previously unselected package libsm6:ppc64el. 1337s Preparing to unpack .../178-libsm6_2%3a1.2.4-1_ppc64el.deb ... 1337s Unpacking libsm6:ppc64el (2:1.2.4-1) ... 1337s Selecting previously unselected package libxcb-icccm4:ppc64el. 1337s Preparing to unpack .../179-libxcb-icccm4_0.4.2-1_ppc64el.deb ... 1337s Unpacking libxcb-icccm4:ppc64el (0.4.2-1) ... 1337s Selecting previously unselected package libxcb-util1:ppc64el. 1337s Preparing to unpack .../180-libxcb-util1_0.4.1-1_ppc64el.deb ... 1337s Unpacking libxcb-util1:ppc64el (0.4.1-1) ... 1337s Selecting previously unselected package libxcb-image0:ppc64el. 1337s Preparing to unpack .../181-libxcb-image0_0.4.0-2build1_ppc64el.deb ... 1337s Unpacking libxcb-image0:ppc64el (0.4.0-2build1) ... 1337s Selecting previously unselected package libxcb-keysyms1:ppc64el. 1337s Preparing to unpack .../182-libxcb-keysyms1_0.4.1-1_ppc64el.deb ... 1337s Unpacking libxcb-keysyms1:ppc64el (0.4.1-1) ... 1337s Selecting previously unselected package libxcb-render-util0:ppc64el. 1337s Preparing to unpack .../183-libxcb-render-util0_0.3.10-1_ppc64el.deb ... 1337s Unpacking libxcb-render-util0:ppc64el (0.3.10-1) ... 1337s Selecting previously unselected package libxcb-shape0:ppc64el. 1337s Preparing to unpack .../184-libxcb-shape0_1.17.0-2_ppc64el.deb ... 1337s Unpacking libxcb-shape0:ppc64el (1.17.0-2) ... 1337s Selecting previously unselected package libxcb-xinerama0:ppc64el. 1337s Preparing to unpack .../185-libxcb-xinerama0_1.17.0-2_ppc64el.deb ... 1337s Unpacking libxcb-xinerama0:ppc64el (1.17.0-2) ... 1337s Selecting previously unselected package libxcb-xinput0:ppc64el. 1337s Preparing to unpack .../186-libxcb-xinput0_1.17.0-2_ppc64el.deb ... 1337s Unpacking libxcb-xinput0:ppc64el (1.17.0-2) ... 1337s Selecting previously unselected package libxcb-xkb1:ppc64el. 1337s Preparing to unpack .../187-libxcb-xkb1_1.17.0-2_ppc64el.deb ... 1337s Unpacking libxcb-xkb1:ppc64el (1.17.0-2) ... 1337s Selecting previously unselected package libxkbcommon-x11-0:ppc64el. 1337s Preparing to unpack .../188-libxkbcommon-x11-0_1.7.0-2_ppc64el.deb ... 1337s Unpacking libxkbcommon-x11-0:ppc64el (1.7.0-2) ... 1337s Selecting previously unselected package libqt5gui5t64:ppc64el. 1337s Preparing to unpack .../189-libqt5gui5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ... 1337s Unpacking libqt5gui5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 1337s Selecting previously unselected package libqt5widgets5t64:ppc64el. 1337s Preparing to unpack .../190-libqt5widgets5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ... 1337s Unpacking libqt5widgets5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 1337s Selecting previously unselected package libqt5xml5t64:ppc64el. 1337s Preparing to unpack .../191-libqt5xml5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ... 1337s Unpacking libqt5xml5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 1337s Selecting previously unselected package libqt5designer5:ppc64el. 1337s Preparing to unpack .../192-libqt5designer5_5.15.15-6build1_ppc64el.deb ... 1337s Unpacking libqt5designer5:ppc64el (5.15.15-6build1) ... 1337s Selecting previously unselected package libqt5sql5t64:ppc64el. 1338s Preparing to unpack .../193-libqt5sql5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ... 1338s Unpacking libqt5sql5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 1338s Selecting previously unselected package libqt5help5:ppc64el. 1338s Preparing to unpack .../194-libqt5help5_5.15.15-6build1_ppc64el.deb ... 1338s Unpacking libqt5help5:ppc64el (5.15.15-6build1) ... 1338s Selecting previously unselected package libqt5opengl5t64:ppc64el. 1338s Preparing to unpack .../195-libqt5opengl5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ... 1338s Unpacking libqt5opengl5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 1338s Selecting previously unselected package libqt5printsupport5t64:ppc64el. 1338s Preparing to unpack .../196-libqt5printsupport5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ... 1338s Unpacking libqt5printsupport5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 1338s Selecting previously unselected package libqt5test5t64:ppc64el. 1338s Preparing to unpack .../197-libqt5test5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ... 1338s Unpacking libqt5test5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 1338s Selecting previously unselected package libraqm0:ppc64el. 1338s Preparing to unpack .../198-libraqm0_0.10.2-1_ppc64el.deb ... 1338s Unpacking libraqm0:ppc64el (0.10.2-1) ... 1338s Selecting previously unselected package libssm2:ppc64el. 1338s Preparing to unpack .../199-libssm2_1.4.0-2build1_ppc64el.deb ... 1338s Unpacking libssm2:ppc64el (1.4.0-2build1) ... 1338s Selecting previously unselected package libwebpdemux2:ppc64el. 1338s Preparing to unpack .../200-libwebpdemux2_1.5.0-0.1_ppc64el.deb ... 1338s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1) ... 1338s Selecting previously unselected package libwebpmux3:ppc64el. 1338s Preparing to unpack .../201-libwebpmux3_1.5.0-0.1_ppc64el.deb ... 1338s Unpacking libwebpmux3:ppc64el (1.5.0-0.1) ... 1338s Selecting previously unselected package libwxbase3.2-1t64:ppc64el. 1338s Preparing to unpack .../202-libwxbase3.2-1t64_3.2.6+dfsg-2ubuntu1_ppc64el.deb ... 1338s Unpacking libwxbase3.2-1t64:ppc64el (3.2.6+dfsg-2ubuntu1) ... 1338s Selecting previously unselected package libxtst6:ppc64el. 1338s Preparing to unpack .../203-libxtst6_2%3a1.2.5-1_ppc64el.deb ... 1338s Unpacking libxtst6:ppc64el (2:1.2.5-1) ... 1338s Selecting previously unselected package libwxgtk3.2-1t64:ppc64el. 1338s Preparing to unpack .../204-libwxgtk3.2-1t64_3.2.6+dfsg-2ubuntu1_ppc64el.deb ... 1338s Unpacking libwxgtk3.2-1t64:ppc64el (3.2.6+dfsg-2ubuntu1) ... 1338s Selecting previously unselected package libwxgtk-gl3.2-1t64:ppc64el. 1338s Preparing to unpack .../205-libwxgtk-gl3.2-1t64_3.2.6+dfsg-2ubuntu1_ppc64el.deb ... 1338s Unpacking libwxgtk-gl3.2-1t64:ppc64el (3.2.6+dfsg-2ubuntu1) ... 1338s Selecting previously unselected package libxslt1.1:ppc64el. 1338s Preparing to unpack .../206-libxslt1.1_1.1.39-0exp1ubuntu4_ppc64el.deb ... 1338s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1ubuntu4) ... 1338s Selecting previously unselected package pymol-data. 1338s Preparing to unpack .../207-pymol-data_3.1.0+dfsg-1_all.deb ... 1338s Unpacking pymol-data (3.1.0+dfsg-1) ... 1338s Selecting previously unselected package python-matplotlib-data. 1338s Preparing to unpack .../208-python-matplotlib-data_3.8.3-7build1_all.deb ... 1338s Unpacking python-matplotlib-data (3.8.3-7build1) ... 1338s Selecting previously unselected package python3-all. 1338s Preparing to unpack .../209-python3-all_3.13.2-2_ppc64el.deb ... 1338s Unpacking python3-all (3.13.2-2) ... 1338s Selecting previously unselected package python3-brotli. 1338s Preparing to unpack .../210-python3-brotli_1.1.0-2build4_ppc64el.deb ... 1338s Unpacking python3-brotli (1.1.0-2build4) ... 1338s Selecting previously unselected package python3-legacy-cgi. 1338s Preparing to unpack .../211-python3-legacy-cgi_2.6.2-1_all.deb ... 1338s Unpacking python3-legacy-cgi (2.6.2-1) ... 1338s Selecting previously unselected package python3-pycbf. 1338s Preparing to unpack .../212-python3-pycbf_0.9.7+dfsg1-5build1_ppc64el.deb ... 1338s Unpacking python3-pycbf (0.9.7+dfsg1-5build1) ... 1338s Selecting previously unselected package python3-hdf5plugin. 1338s Preparing to unpack .../213-python3-hdf5plugin_5.0.0-1_all.deb ... 1338s Unpacking python3-hdf5plugin (5.0.0-1) ... 1338s Selecting previously unselected package python3-dateutil. 1338s Preparing to unpack .../214-python3-dateutil_2.9.0-4_all.deb ... 1338s Unpacking python3-dateutil (2.9.0-4) ... 1338s Selecting previously unselected package libopenjp2-7:ppc64el. 1338s Preparing to unpack .../215-libopenjp2-7_2.5.3-2_ppc64el.deb ... 1338s Unpacking libopenjp2-7:ppc64el (2.5.3-2) ... 1338s Selecting previously unselected package python3-pil:ppc64el. 1338s Preparing to unpack .../216-python3-pil_11.1.0-5build1_ppc64el.deb ... 1338s Unpacking python3-pil:ppc64el (11.1.0-5build1) ... 1338s Selecting previously unselected package python3.13-tk. 1338s Preparing to unpack .../217-python3.13-tk_3.13.2-2_ppc64el.deb ... 1338s Unpacking python3.13-tk (3.13.2-2) ... 1338s Selecting previously unselected package python3-tk:ppc64el. 1338s Preparing to unpack .../218-python3-tk_3.13.2-1_ppc64el.deb ... 1338s Unpacking python3-tk:ppc64el (3.13.2-1) ... 1338s Selecting previously unselected package python3-pil.imagetk:ppc64el. 1338s Preparing to unpack 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python3-sympy (1.13.3-5) ... 1339s Selecting previously unselected package python3-ufolib2. 1339s Preparing to unpack .../230-python3-ufolib2_0.17.0+dfsg1-1_all.deb ... 1339s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ... 1339s Selecting previously unselected package unicode-data. 1339s Preparing to unpack .../231-unicode-data_15.1.0-1_all.deb ... 1339s Unpacking unicode-data (15.1.0-1) ... 1339s Selecting previously unselected package python3-fonttools. 1339s Preparing to unpack .../232-python3-fonttools_4.55.3-2build1_ppc64el.deb ... 1339s Unpacking python3-fonttools (4.55.3-2build1) ... 1340s Selecting previously unselected package python3-importlib-resources. 1340s Preparing to unpack .../233-python3-importlib-resources_6.5.2-1_all.deb ... 1340s Unpacking python3-importlib-resources (6.5.2-1) ... 1340s Selecting previously unselected package python3-kiwisolver. 1340s Preparing to unpack .../234-python3-kiwisolver_1.4.7-3build1_ppc64el.deb ... 1340s Unpacking python3-kiwisolver (1.4.7-3build1) ... 1340s Selecting previously unselected package python3-packaging. 1340s Preparing to unpack .../235-python3-packaging_24.2-1_all.deb ... 1340s Unpacking python3-packaging (24.2-1) ... 1340s Selecting previously unselected package python3-matplotlib. 1340s Preparing to unpack .../236-python3-matplotlib_3.8.3-7build1_ppc64el.deb ... 1340s Unpacking python3-matplotlib (3.8.3-7build1) ... 1340s Selecting previously unselected package sphinx-rtd-theme-common. 1340s Preparing to unpack .../237-sphinx-rtd-theme-common_3.0.2+dfsg-2_all.deb ... 1340s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-2) ... 1340s Selecting previously unselected package python3-mrcfile. 1340s Preparing to unpack .../238-python3-mrcfile_1.5.4-2_all.deb ... 1340s Unpacking python3-mrcfile (1.5.4-2) ... 1340s Selecting previously unselected package python3-natsort. 1340s Preparing to unpack .../239-python3-natsort_8.0.2-2_all.deb ... 1340s Unpacking python3-natsort (8.0.2-2) ... 1340s Selecting previously unselected package python3-flexcache. 1340s Preparing to unpack .../240-python3-flexcache_0.3-2_all.deb ... 1340s Unpacking python3-flexcache (0.3-2) ... 1340s Selecting previously unselected package python3-flexparser. 1340s Preparing to unpack .../241-python3-flexparser_0.4-1_all.deb ... 1340s Unpacking python3-flexparser (0.4-1) ... 1340s Selecting previously unselected package python3-pint. 1340s Preparing to unpack .../242-python3-pint_0.24.4-1_all.deb ... 1340s Unpacking python3-pint (0.24.4-1) ... 1340s Selecting previously unselected package python3-nxmx. 1340s Preparing to unpack .../243-python3-nxmx_0.0.4-1_all.deb ... 1340s Unpacking python3-nxmx (0.0.4-1) ... 1340s Selecting previously unselected package python3-ordered-set. 1340s Preparing to unpack .../244-python3-ordered-set_4.1.0-1_all.deb ... 1340s Unpacking python3-ordered-set (4.1.0-1) ... 1340s Selecting previously unselected package python3-procrunner. 1340s Preparing to unpack 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(1.5.0-0.1) ... 1343s Setting up libwayland-server0:ppc64el (1.23.1-3) ... 1343s Setting up libx11-xcb1:ppc64el (2:1.8.10-2) ... 1343s Setting up libpciaccess0:ppc64el (0.17-3build1) ... 1343s Setting up libdouble-conversion3:ppc64el (3.3.1-1) ... 1343s Setting up fonts-lato (2.015-1) ... 1343s Setting up libxdamage1:ppc64el (1:1.1.6-1build1) ... 1343s Setting up libxcb-xfixes0:ppc64el (1.17.0-2) ... 1343s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ... 1343s Setting up libantlr3c-3.4-0:ppc64el (3.4+dfsg-4build2) ... 1343s Setting up hicolor-icon-theme (0.18-2) ... 1343s Setting up libxi6:ppc64el (2:1.8.2-1) ... 1343s Setting up libxcb-xinput0:ppc64el (1.17.0-2) ... 1343s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ... 1343s Setting up libdatrie1:ppc64el (0.2.13-3build1) ... 1343s Setting up python3-importlib-resources (6.5.2-1) ... 1343s Setting up libmmdb2-0:ppc64el (2.0.22-1) ... 1343s Setting up libboost-timer1.83.0:ppc64el (1.83.0-4.1ubuntu2) ... 1343s Setting up python3-lz4 (4.4.0+dfsg-1build1) ... 1343s Setting up libxcb-render0:ppc64el (1.17.0-2) ... 1343s Setting up libevent-pthreads-2.1-7t64:ppc64el (2.1.12-stable-10) ... 1343s Setting up libglvnd0:ppc64el (1.7.0-1build1) ... 1343s Setting up fonts-lyx (2.4.3-1) ... 1343s Setting up libxcb-glx0:ppc64el (1.17.0-2) ... 1343s Setting up python3-tqdm (4.67.1-2) ... 1343s Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ... 1343s Setting up libxcb-keysyms1:ppc64el (0.4.1-1) ... 1343s Setting up libxcb-shape0:ppc64el (1.17.0-2) ... 1343s Setting up x11-common (1:7.7+23ubuntu3) ... 1344s Setting up libibumad3:ppc64el (56.0-3ubuntu1) ... 1344s Setting up libdeflate0:ppc64el (1.23-1) ... 1344s Setting up libboost-thread1.83.0:ppc64el (1.83.0-4.1ubuntu2) ... 1344s Setting up libqhull-r8.0:ppc64el (2020.2-6build1) ... 1344s Setting up libxcb-render-util0:ppc64el (0.3.10-1) ... 1344s Setting up python3-all (3.13.2-2) ... 1344s Setting up python3-ordered-set (4.1.0-1) ... 1344s Setting up libxcb-shm0:ppc64el (1.17.0-2) ... 1344s Setting up libibmad5:ppc64el (56.0-3ubuntu1) ... 1344s Setting up libxcb-icccm4:ppc64el (0.4.2-1) ... 1344s Setting up libccp4-data (8.0.0-4) ... 1344s Setting up libgomp1:ppc64el (15-20250319-1ubuntu1) ... 1344s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ... 1344s Setting up libpcre2-16-0:ppc64el (10.45-1) ... 1344s Setting up libaec0:ppc64el (1.1.3-1) ... 1344s Setting up libcolord2:ppc64el (1.4.7-3) ... 1344s Setting up python3-platformdirs (4.3.6-1) ... 1344s Setting up libopengl0:ppc64el (1.7.0-1build1) ... 1344s Setting up python3-natsort (8.0.2-2) ... 1344s Setting up libxcb-util1:ppc64el (0.4.1-1) ... 1344s Setting up libxxf86vm1:ppc64el (1:1.1.4-1build4) ... 1344s Setting up libxcb-xkb1:ppc64el (1.17.0-2) ... 1344s Setting up libxcb-image0:ppc64el (0.4.0-2build1) ... 1344s Setting up python3-fs (2.4.16-7) ... 1344s Setting up libxnvctrl0:ppc64el (510.47.03-0ubuntu4) ... 1344s Setting up libxcb-present0:ppc64el (1.17.0-2) ... 1344s Setting up libdconf1:ppc64el (0.40.0-5) ... 1344s Setting up unicode-data (15.1.0-1) ... 1344s Setting up python3-six (1.17.0-1) ... 1344s Setting up libqt5core5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 1344s Setting up python3-decorator (5.1.1-5) ... 1344s Setting up libboost-numpy1.83.0 (1.83.0-4.1ubuntu2) ... 1344s Setting up libpcre2-32-0:ppc64el (10.45-1) ... 1344s Setting up libblas3:ppc64el (3.12.1-2) ... 1344s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 1344s Setting up python3-packaging (24.2-1) ... 1345s Setting up libxcb-xinerama0:ppc64el (1.17.0-2) ... 1345s Setting up python3-flexparser (0.4-1) ... 1345s Setting up libmunge2:ppc64el (0.5.16-1) ... 1345s Setting up libllvm17t64:ppc64el (1:17.0.6-21) ... 1345s Setting up libexpat1-dev:ppc64el (2.6.4-1) ... 1345s Setting up libann-cctbx0 (1.1.2+doc-9build1) ... 1345s Setting up libepoxy0:ppc64el (1.5.10-2) ... 1345s Setting up libxfixes3:ppc64el (1:6.0.0-2build1) ... 1345s Setting up libxcb-sync1:ppc64el (1.17.0-2) ... 1345s Setting up python3-brotli (1.1.0-2build4) ... 1345s Setting up libavahi-common-data:ppc64el (0.8-16ubuntu2) ... 1345s Setting up libatspi2.0-0t64:ppc64el (2.56.0-2) ... 1345s Setting up liblzf1:ppc64el (3.6-4) ... 1345s Setting up libquadmath0:ppc64el (15-20250319-1ubuntu1) ... 1345s Setting up python3-cycler (0.12.1-1) ... 1345s Setting up libxinerama1:ppc64el (2:1.1.4-3build1) ... 1345s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 1345s Setting up pymol-data (3.1.0+dfsg-1) ... 1345s Setting up libxkbcommon-x11-0:ppc64el (1.7.0-2) ... 1345s Setting up fonts-dejavu-mono (2.37-8) ... 1345s Setting up python3-kiwisolver (1.4.7-3build1) ... 1345s Setting up libhwloc15:ppc64el (2.12.0-1) ... 1345s Setting up python3-numpy-dev:ppc64el (1:2.2.3+ds-5) ... 1345s Setting up libxrandr2:ppc64el (2:1.5.4-1) ... 1345s Setting up libtcl8.6:ppc64el (8.6.16+dfsg-1) ... 1345s Setting up fonts-dejavu-core (2.37-8) ... 1345s Setting up libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ... 1345s Setting up libgfortran5:ppc64el (15-20250319-1ubuntu1) ... 1345s Setting up libvulkan1:ppc64el (1.4.304.0-1) ... 1345s Setting up python3-pluggy (1.5.0-1) ... 1345s Setting up libwebp7:ppc64el (1.5.0-0.1) ... 1345s Setting up libubsan1:ppc64el (15-20250319-1ubuntu1) ... 1345s Setting up python3-legacy-cgi (2.6.2-1) ... 1345s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 1345s Setting up python3-pyqt5.sip (12.17.0-1build1) ... 1345s Setting up libmtdev1t64:ppc64el (1.1.7-1) ... 1345s Setting up ocl-icd-libopencl1:ppc64el (2.3.2-1build1) ... 1345s Setting up libxshmfence1:ppc64el (1.3-1build5) ... 1345s Setting up at-spi2-common (2.56.0-2) ... 1345s Setting up libccp4c0t64:ppc64el (8.0.0-4) ... 1345s Setting up libxcb-randr0:ppc64el (1.17.0-2) ... 1345s Setting up libasan8:ppc64el (15-20250319-1ubuntu1) ... 1345s Setting up libxslt1.1:ppc64el (1.1.39-0exp1ubuntu4) ... 1345s Setting up libqt5sql5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 1345s Setting up libmd4c0:ppc64el (0.5.2-2) ... 1345s Setting up librdmacm1t64:ppc64el (56.0-3ubuntu1) ... 1345s Setting up libopenjp2-7:ppc64el (2.5.3-2) ... 1345s Setting up libharfbuzz0b:ppc64el (10.2.0-1) ... 1345s Setting up libthai-data (0.1.29-2build1) ... 1345s Setting up python3-dateutil (2.9.0-4) ... 1345s Setting up python3-flexcache (0.3-2) ... 1345s Setting up libglu1-mesa:ppc64el (9.0.2-1.1build1) ... 1345s Setting up libamd-comgr2:ppc64el (6.0+git20231212.4510c28+dfsg-3build2) ... 1345s Setting up libwayland-egl1:ppc64el (1.23.1-3) ... 1345s Setting up libxss1:ppc64el (1:1.2.3-1build3) ... 1345s Setting up libtsan2:ppc64el (15-20250319-1ubuntu1) ... 1345s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1345s Setting up libwxbase3.2-1t64:ppc64el (3.2.6+dfsg-2ubuntu1) ... 1345s Setting up python3-mpmath (1.3.0-1) ... 1346s Setting up python-matplotlib-data (3.8.3-7build1) ... 1346s Setting up libwebpmux3:ppc64el (1.5.0-0.1) ... 1346s Setting up libxcomposite1:ppc64el (1:0.4.6-1) ... 1346s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 1346s Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ... 1346s Setting up python3-procrunner (2.3.3-2) ... 1346s Setting up liblsan0:ppc64el (15-20250319-1ubuntu1) ... 1346s Setting up libhsakmt1:ppc64el (5.7.0-1build1) ... 1346s Setting up libsz2:ppc64el (1.1.3-1) ... 1346s Setting up libitm1:ppc64el (15-20250319-1ubuntu1) ... 1346s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 1346s Setting up libann-cctbx-dev (1.1.2+doc-9build1) ... 1346s Setting up libwacom-common (2.14.0-1) ... 1346s Setting up libwayland-client0:ppc64el (1.23.1-3) ... 1346s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 1346s Setting up libfabric1:ppc64el (1.17.0-3.1) ... 1346s Setting up python3-sympy (1.13.3-5) ... 1352s Setting up libice6:ppc64el (2:1.1.1-1) ... 1352s Setting up mesa-libgallium:ppc64el (25.0.1-2ubuntu2) ... 1352s Setting up liblapack3:ppc64el (3.12.1-2) ... 1352s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 1352s Setting up libqt5dbus5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 1352s Setting up libssm2:ppc64el (1.4.0-2build1) ... 1352s Setting up libatk1.0-0t64:ppc64el (2.56.0-2) ... 1352s Setting up libgbm1:ppc64el (25.0.1-2ubuntu2) ... 1352s Setting up libwacom9:ppc64el (2.14.0-1) ... 1352s Setting up fontconfig-config (2.15.0-2.1ubuntu1) ... 1352s Setting up python3-pytest (8.3.5-1) ... 1353s Setting up libxtst6:ppc64el (2:1.2.5-1) ... 1353s Setting up libwebpdemux2:ppc64el (1.5.0-0.1) ... 1353s Setting up python3-pytest-datadir (1.4.1+ds-1) ... 1353s Setting up libxcursor1:ppc64el (1:1.2.3-1) ... 1353s Setting up libgl1-mesa-dri:ppc64el (25.0.1-2ubuntu2) ... 1353s Setting up libqt5network5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 1353s Setting up libavahi-common3:ppc64el (0.8-16ubuntu2) ... 1353s Setting up libqt5xml5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 1353s Setting up dconf-service (0.40.0-5) ... 1353s Setting up libqt5test5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 1353s Setting up libhwloc-plugins:ppc64el (2.12.0-1) ... 1353s Setting up libccp4f0t64:ppc64el (8.0.0-4) ... 1353s Setting up libinput-bin (1.27.1-1) ... 1353s Setting up python3-pint (0.24.4-1) ... 1353s Setting up libthai0:ppc64el (0.1.29-2build1) ... 1353s Setting up libegl-mesa0:ppc64el (25.0.1-2ubuntu2) ... 1353s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 1353s Setting up libraqm0:ppc64el (0.10.2-1) ... 1353s Setting up libpython3.13-dev:ppc64el (3.13.2-2) ... 1353s Setting up libpmix2t64:ppc64el (5.0.6-5) ... 1353s Setting up python3-numpy (1:2.2.3+ds-5) ... 1355s Setting up libjs-sphinxdoc (8.1.3-5) ... 1355s Setting up libhdf5-310:ppc64el (1.14.5+repack-3) ... 1355s Setting up python3-pytest-mock (3.14.0-2) ... 1355s Setting up python3-lxml:ppc64el (5.3.1-1build1) ... 1355s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ... 1355s Setting up libwayland-cursor0:ppc64el (1.23.1-3) ... 1355s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 1355s Setting up libegl1:ppc64el (1.7.0-1build1) ... 1355s Setting up libgdk-pixbuf-2.0-0:ppc64el (2.42.12+dfsg-2) ... 1355s Setting up python3-contourpy (1.3.1-1build1) ... 1356s Setting up libfontconfig1:ppc64el (2.15.0-2.1ubuntu1) ... 1356s Setting up libgcc-14-dev:ppc64el (14.2.0-19ubuntu1) ... 1356s Setting up python3-dials-data (2.4.0-2) ... 1356s Setting up libstdc++-14-dev:ppc64el (14.2.0-19ubuntu1) ... 1356s Setting up libsm6:ppc64el (2:1.2.4-1) ... 1356s Setting up libavahi-client3:ppc64el (0.8-16ubuntu2) ... 1356s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 1356s Setting up python3-mrcfile (1.5.4-2) ... 1356s Setting up libatk-bridge2.0-0t64:ppc64el (2.56.0-2) ... 1356s Setting up libinput10:ppc64el (1.27.1-1) ... 1356s Setting up gtk-update-icon-cache (4.18.2+ds-1) ... 1356s Setting up libhdf5-hl-310:ppc64el (1.14.5+repack-3) ... 1356s Setting up fontconfig (2.15.0-2.1ubuntu1) ... 1358s Regenerating fonts cache... done. 1358s Setting up libxft2:ppc64el (2.3.6-1build1) ... 1358s Setting up libboost1.83-dev:ppc64el (1.83.0-4.1ubuntu2) ... 1358s Setting up libglx-mesa0:ppc64el (25.0.1-2ubuntu2) ... 1358s Setting up python3-scipy (1.14.1-4ubuntu2) ... 1361s Setting up libpython3-dev:ppc64el (3.13.2-2) ... 1361s Setting up libcbf1t64:ppc64el (0.9.7+dfsg1-5build1) ... 1361s Setting up libglx0:ppc64el (1.7.0-1build1) ... 1361s Setting up dconf-gsettings-backend:ppc64el (0.40.0-5) ... 1361s Setting up libccp4-dev:ppc64el (8.0.0-4) ... 1361s Setting up python3.13-dev (3.13.2-2) ... 1361s Setting up libtk8.6:ppc64el (8.6.16-1) ... 1361s Setting up libpango-1.0-0:ppc64el (1.56.3-1) ... 1361s Setting up libnetcdf22:ppc64el (1:4.9.3-1) ... 1361s Setting up python3-h5py-serial (3.13.0-1) ... 1361s Setting up libcairo2:ppc64el (1.18.4-1) ... 1361s Setting up python3.13-tk (3.13.2-2) ... 1362s Setting up python3-pil:ppc64el (11.1.0-5build1) ... 1362s Setting up libgl1:ppc64el (1.7.0-1build1) ... 1362s Setting up libamdhip64-5 (5.7.1-5build1) ... 1362s Setting up python3-pytest-regressions (2.5.0+ds-2) ... 1362s Setting up adwaita-icon-theme (48.0-1) ... 1362s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 1362s Setting up libglut3.12:ppc64el (3.4.0-4) ... 1362s Setting up libnotify4:ppc64el (0.8.4-1) ... 1362s Setting up python3-dev (3.13.2-2) ... 1362s Setting up libboost-python1.83-dev (1.83.0-4.1ubuntu2) ... 1362s Setting up python3-pycbf (0.9.7+dfsg1-5build1) ... 1362s Setting up python3-h5py (3.13.0-1) ... 1362s Setting up libglew2.2:ppc64el (2.2.0-4build1) ... 1362s Setting up python3-hdf5plugin (5.0.0-1) ... 1362s Setting up libcairo-gobject2:ppc64el (1.18.4-1) ... 1362s Setting up libpangoft2-1.0-0:ppc64el (1.56.3-1) ... 1362s Setting up python3-nxmx (0.0.4-1) ... 1362s Setting up libcups2t64:ppc64el (2.4.11-0ubuntu2) ... 1362s Setting up libgtk-3-common (3.24.49-2ubuntu1) ... 1362s Setting up libpangocairo-1.0-0:ppc64el (1.56.3-1) ... 1362s Setting up libcctbx0 (2024.10+ds2+~3.22.1+ds1-4build2) ... 1362s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 1362s Setting up libucx0:ppc64el (1.18.1+ds-2) ... 1362s Setting up blt (2.5.3+dfsg-8) ... 1362s Setting up python3-tk:ppc64el (3.13.2-1) ... 1362s Setting up python3-opengl (3.1.9+dfsg-1syncable1) ... 1363s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:30: SyntaxWarning: invalid escape sequence '\ ' 1363s |\ |\ 1364s Setting up libboost-python-dev (1.83.0.2ubuntu1) ... 1364s Setting up libqt5gui5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 1364s Setting up python3-pil.imagetk:ppc64el (11.1.0-5build1) ... 1364s Setting up libcctbx-dev (2024.10+ds2+~3.22.1+ds1-4build2) ... 1364s Setting up libopenmpi40:ppc64el (5.0.7-1) ... 1364s Setting up libqt5widgets5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 1364s Setting up libhdf5-openmpi-310:ppc64el (1.14.5+repack-3) ... 1364s Setting up libqt5help5:ppc64el (5.15.15-6build1) ... 1364s Setting up libqt5opengl5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 1364s Setting up libqt5printsupport5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ... 1364s Setting up bitshuffle (0.5.2-1build2) ... 1364s Setting up libqt5designer5:ppc64el (5.15.15-6build1) ... 1364s Setting up python3-pyqt5 (5.15.11+dfsg-2) ... 1364s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-2) ... 1364s Setting up python3-pymol (3.1.0+dfsg-1) ... 1365s Setting up python3-fonttools (4.55.3-2build1) ... 1366s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 1366s Setting up python3-matplotlib (3.8.3-7build1) ... 1368s Processing triggers for libc-bin (2.41-1ubuntu2) ... 1368s Processing triggers for man-db (2.13.0-1) ... 1369s Processing triggers for libglib2.0-0t64:ppc64el (2.84.0-1) ... 1369s Setting up libgtk-3-0t64:ppc64el (3.24.49-2ubuntu1) ... 1369s Processing triggers for udev (257.4-1ubuntu1) ... 1370s Setting up libwxgtk3.2-1t64:ppc64el (3.2.6+dfsg-2ubuntu1) ... 1370s Setting up libwxgtk-gl3.2-1t64:ppc64el (3.2.6+dfsg-2ubuntu1) ... 1370s Setting up python3-wxgtk4.0 (4.2.2+dfsg-3build1) ... 1371s Setting up python3-cctbx (2024.10+ds2+~3.22.1+ds1-4build2) ... 1374s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:18: SyntaxWarning: invalid escape sequence '\{' 1374s []_,.;:"&<>()/\{}'`~!@#$%*|+- 1374s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:46: SyntaxWarning: invalid escape sequence '\/' 1374s special_characters = """[]_,.;:"&<>()\/\{}'`~!@#$%*|+-""" 1384s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:724: SyntaxWarning: invalid escape sequence '\o' 1384s width=pairwise_differences_db, label='$\omega_{hkl}$' 1384s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:739: SyntaxWarning: invalid escape sequence '\o' 1384s axes[0].set_ylabel('Distribution of $\omega_{hbk}$') 1384s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:740: SyntaxWarning: invalid escape sequence '\o' 1384s axes[0].set_xlabel('Normalized PD ($\omega_{hbk}$)') 1384s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:759: SyntaxWarning: invalid escape sequence '\o' 1384s axes[1].set_xlabel('Sorted Normalized PD ($\omega_{hbk}$)') 1384s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:778: SyntaxWarning: invalid escape sequence '\s' 1384s axes[2].set_ylabel('Standard Deviation of $I_{hbk}/\sigma_{hbk}$') 1384s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:807: SyntaxWarning: invalid escape sequence '\m' 1384s axes_sadd.set_ylabel('$s_{\mathrm{fac}}^2 \\times s_{\mathrm{add}}^2$') 1384s Processing triggers for libc-bin (2.41-1ubuntu2) ... 1401s autopkgtest [15:08:55]: test dxtbx: [----------------------- 1402s Testing dxtbx with python3.13: 1405s Fatal Python error: Segmentation fault 1405s 1405s Current thread 0x00007ef328b64440 (most recent call first): 1405s File "/usr/lib/python3/dist-packages/cctbx/sgtbx/__init__.py", line 102 in __init__ 1405s File "/usr/lib/python3/dist-packages/cctbx/crystal/__init__.py", line 75 in __init__ 1405s File "/tmp/autopkgtest.hKIHkJ/autopkgtest_tmp/tests/test_crystal_model_equivalence.py", line 28 in 1405s File "/usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py", line 185 in exec_module 1405s File "", line 935 in _load_unlocked 1405s File "", line 1331 in _find_and_load_unlocked 1405s File "", line 1360 in _find_and_load 1405s File "", line 1387 in _gcd_import 1405s File "/usr/lib/python3.13/importlib/__init__.py", line 88 in import_module 1405s File "/usr/lib/python3/dist-packages/_pytest/pathlib.py", line 587 in import_path 1405s File "/usr/lib/python3/dist-packages/_pytest/python.py", line 493 in importtestmodule 1405s File "/usr/lib/python3/dist-packages/_pytest/python.py", line 546 in _getobj 1405s File "/usr/lib/python3/dist-packages/_pytest/python.py", line 284 in obj 1405s File "/usr/lib/python3/dist-packages/_pytest/python.py", line 562 in _register_setup_module_fixture 1405s File "/usr/lib/python3/dist-packages/_pytest/python.py", line 549 in collect 1405s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 389 in collect 1405s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341 in from_call 1405s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 391 in pytest_make_collect_report 1405s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall 1405s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1405s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__ 1405s File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 567 in collect_one_node 1405s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 835 in _collect_one_node 1405s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 970 in genitems 1405s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 975 in genitems 1405s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 975 in genitems 1405s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 809 in perform_collect 1405s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 347 in pytest_collection 1405s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall 1405s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1405s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__ 1405s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 336 in _main 1405s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283 in wrap_session 1405s File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330 in pytest_cmdline_main 1405s File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall 1405s File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec 1405s File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__ 1405s File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175 in main 1405s File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 201 in console_main 1405s File "/usr/lib/python3/dist-packages/pytest/__main__.py", line 9 in 1405s File "", line 88 in _run_code 1405s File "", line 198 in _run_module_as_main 1405s 1405s Extension modules: _brotli, yaml._yaml, h5py._debian_h5py_serial._errors, h5py._debian_h5py_serial.defs, h5py._debian_h5py_serial._objects, h5py._debian_h5py_serial.h5, numpy._core._multiarray_umath, numpy.linalg._umath_linalg, h5py._debian_h5py_serial.utils, h5py._debian_h5py_serial.h5t, h5py._debian_h5py_serial.h5s, h5py._debian_h5py_serial.h5ac, h5py._debian_h5py_serial.h5p, h5py._debian_h5py_serial.h5r, h5py._debian_h5py_serial._proxy, h5py._debian_h5py_serial._conv, h5py._debian_h5py_serial.h5z, h5py._debian_h5py_serial.h5a, h5py._debian_h5py_serial.h5d, h5py._debian_h5py_serial.h5ds, h5py._debian_h5py_serial.h5g, h5py._debian_h5py_serial.h5i, h5py._debian_h5py_serial.h5o, h5py._debian_h5py_serial.h5f, h5py._debian_h5py_serial.h5fd, h5py._debian_h5py_serial.h5pl, h5py._debian_h5py_serial.h5l, h5py._debian_h5py_serial._selector, h5py.atexit, h5py._errors, h5py.defs, h5py._objects, h5py.h5, h5py.utils, h5py.h5t, h5py.h5s, h5py.h5ac, h5py.h5p, h5py.h5r, h5py._proxy, h5py._conv, h5py.h5z, h5py.h5a, h5py.h5d, h5py.h5ds, h5py.h5g, h5py.h5i, h5py.h5o, h5py.h5f, h5py.h5fd, h5py.h5pl, h5py.h5l, h5py._selector, scipy._lib._ccallback_c, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, scipy.sparse._sparsetools, _csparsetools, scipy.sparse._csparsetools, scipy.linalg._fblas, scipy.linalg._flapack, scipy.linalg.cython_lapack, scipy.linalg._cythonized_array_utils, scipy.linalg._solve_toeplitz, scipy.linalg._decomp_lu_cython, scipy.linalg._matfuncs_sqrtm_triu, scipy.linalg.cython_blas, scipy.linalg._matfuncs_expm, scipy.linalg._decomp_update, scipy.sparse.linalg._dsolve._superlu, scipy.sparse.linalg._eigen.arpack._arpack, scipy.sparse.linalg._propack._spropack, scipy.sparse.linalg._propack._dpropack, scipy.sparse.linalg._propack._cpropack, scipy.sparse.linalg._propack._zpropack, scipy.sparse.csgraph._tools, scipy.sparse.csgraph._shortest_path, scipy.sparse.csgraph._traversal, scipy.sparse.csgraph._min_spanning_tree, scipy.sparse.csgraph._flow, scipy.sparse.csgraph._matching, scipy.sparse.csgraph._reordering, scipy.spatial._ckdtree, scipy._lib.messagestream, scipy.spatial._qhull, scipy.spatial._voronoi, scipy.spatial._distance_wrap, scipy.spatial._hausdorff, scipy.special._ufuncs_cxx, scipy.special._ufuncs, scipy.special._specfun, scipy.special._comb, scipy.special._ellip_harm_2, scipy.spatial.transform._rotation, boost_python_meta_ext, boost_optional_ext, std_pair_ext, scitbx_array_family_flex_ext, scitbx_stl_set_ext, scitbx_stl_vector_ext, scitbx_stl_map_ext, scitbx_random_ext, cctbx_array_family_flex_ext, cctbx_crystal_ext, scitbx_array_family_shared_ext, cctbx_uctbx_ext, cctbx_sgtbx_ext, boost_rational_ext, cctbx_covariance_ext, cctbx_geometry_ext, scitbx_cubicle_neighbors_ext, dxtbx_format_image_ext, dxtbx_imageset_ext, dxtbx_ext, _pycbf, dxtbx_model_ext, cctbx_eltbx_attenuation_coefficient_ext, iotbx_detectors_ext, iotbx_detectors_bruker_ext, omptbx_ext, dxtbx_masking_ext, dxtbx_format_nexus_ext, scitbx_math_ext, scitbx_linalg_ext, cctbx_orientation_ext, scipy.interpolate._fitpack, scipy.interpolate._dfitpack, scipy.optimize._group_columns, scipy.optimize._trlib._trlib, scipy.optimize._lbfgsb, _moduleTNC, scipy.optimize._moduleTNC, scipy.optimize._cobyla, scipy.optimize._slsqp, scipy.optimize._minpack, scipy.optimize._lsq.givens_elimination, scipy.optimize._zeros, scipy.optimize._highs.cython.src._highs_wrapper, scipy.optimize._highs._highs_wrapper, scipy.optimize._highs.cython.src._highs_constants, scipy.optimize._highs._highs_constants, scipy.linalg._interpolative, scipy.optimize._bglu_dense, scipy.optimize._lsap, scipy.optimize._direct, scipy.interpolate._bspl, scipy.interpolate._ppoly, scipy.interpolate.interpnd, scipy.interpolate._rbfinterp_pythran, scipy.interpolate._rgi_cython, iotbx_cif_ext, cctbx_miller_ext, cctbx_asymmetric_map_ext, cctbx_maptbx_ext, cctbx_adptbx_ext, scitbx_fftpack_ext, cctbx_xray_ext, cctbx_eltbx_xray_scattering_ext, cctbx_math_ext, cctbx_eltbx_neutron_ext, scitbx_lbfgs_ext (total: 168) 1410s Segmentation fault (core dumped) 1410s autopkgtest [15:09:04]: test dxtbx: -----------------------] 1411s autopkgtest [15:09:05]: test dxtbx: - - - - - - - - - - results - - - - - - - - - - 1411s dxtbx FAIL non-zero exit status 139 1411s autopkgtest [15:09:05]: @@@@@@@@@@@@@@@@@@@@ summary 1411s cctbx FAIL non-zero exit status 1 1411s dxtbx FAIL non-zero exit status 139 1429s nova [W] Using flock in prodstack6-ppc64el 1429s Creating nova instance adt-plucky-ppc64el-cctbx-20250322-130600-juju-7f2275-prod-proposed-migration-environment-20-98d79696-5e92-4ec1-bd98-9f335ee08536 from image adt/ubuntu-plucky-ppc64el-server-20250322.img (UUID 8c6d15e1-2abf-4991-a719-890835523c0f)... 1429s nova [W] Timed out waiting for 7bd5ed17-1536-48f2-b1ca-af90cb3a3eeb to get deleted. 1429s nova [W] Using flock in prodstack6-ppc64el 1429s Creating nova instance adt-plucky-ppc64el-cctbx-20250322-130600-juju-7f2275-prod-proposed-migration-environment-20-98d79696-5e92-4ec1-bd98-9f335ee08536 from image adt/ubuntu-plucky-ppc64el-server-20250322.img (UUID 8c6d15e1-2abf-4991-a719-890835523c0f)... 1429s nova [W] Timed out waiting for 7a2c3751-1ef8-44b6-b6f7-c5343e4b7f5c to get deleted.