0s autopkgtest [13:49:45]: starting date and time: 2025-03-13 13:49:45+0000
  0s autopkgtest [13:49:45]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [13:49:45]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6n9gnon8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:cctbx --apt-upgrade cctbx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=cctbx/2024.10+ds2+~3.22.1+ds1-4build2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-ppc64el --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-3.secgroup --name adt-plucky-ppc64el-cctbx-20250313-110403-juju-7f2275-prod-proposed-migration-environment-20-6fe9cf99-60ca-4967-b7c1-5270bc9e095a --image adt/ubuntu-plucky-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-ppc64el -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
981s nova [W] Using flock in prodstack6-ppc64el
981s Creating nova instance adt-plucky-ppc64el-cctbx-20250313-110403-juju-7f2275-prod-proposed-migration-environment-20-6fe9cf99-60ca-4967-b7c1-5270bc9e095a from image adt/ubuntu-plucky-ppc64el-server-20250313.img (UUID 039b69e3-5f2d-4af8-9d4f-d440c2e5edc9)...
981s nova [E] nova boot failed (attempt #0):
981s nova [E] DEBUG (extension:189) found extension EntryPoint.parse('v1password = swiftclient.authv1:PasswordLoader')
981s DEBUG (extension:189) found extension EntryPoint.parse('noauth = cinderclient.contrib.noauth:CinderNoAuthLoader')
981s DEBUG (extension:189) found extension EntryPoint.parse('admin_token = keystoneauth1.loading._plugins.admin_token:AdminToken')
981s DEBUG (extension:189) found extension EntryPoint.parse('none = keystoneauth1.loading._plugins.noauth:NoAuth')
981s DEBUG (extension:189) found extension EntryPoint.parse('password = keystoneauth1.loading._plugins.identity.generic:Password')
981s DEBUG (extension:189) found extension EntryPoint.parse('token = keystoneauth1.loading._plugins.identity.generic:Token')
981s DEBUG (extension:189) found extension EntryPoint.parse('v2password = keystoneauth1.loading._plugins.identity.v2:Password')
981s DEBUG (extension:189) found extension EntryPoint.parse('v2token = keystoneauth1.loading._plugins.identity.v2:Token')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3adfspassword = keystoneauth1.extras._saml2._loading:ADFSPassword')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3applicationcredential = keystoneauth1.loading._plugins.identity.v3:ApplicationCredential')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3fedkerb = keystoneauth1.extras.kerberos._loading:MappedKerberos')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3kerberos = keystoneauth1.extras.kerberos._loading:Kerberos')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3multifactor = keystoneauth1.loading._plugins.identity.v3:MultiFactor')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3oauth1 = keystoneauth1.extras.oauth1._loading:V3OAuth1')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcaccesstoken = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAccessToken')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcauthcode = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAuthorizationCode')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcclientcredentials = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectClientCredentials')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcpassword = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectPassword')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3password = keystoneauth1.loading._plugins.identity.v3:Password')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3samlpassword = keystoneauth1.extras._saml2._loading:Saml2Password')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3token = keystoneauth1.loading._plugins.identity.v3:Token')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3tokenlessauth = keystoneauth1.loading._plugins.identity.v3:TokenlessAuth')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3totp = keystoneauth1.loading._plugins.identity.v3:TOTP')
981s DEBUG (session:517) REQ: curl -g -i -X GET https://keystone.ps6.canonical.com:5000/v3 -H "Accept: application/json" -H "User-Agent: nova keystoneauth1/4.0.0 python-requests/2.22.0 CPython/3.8.10"
981s DEBUG (connectionpool:962) Starting new HTTPS connection (1): keystone.ps6.canonical.com:5000
981s DEBUG (connectionpool:429) https://keystone.ps6.canonical.com:5000 "GET /v3 HTTP/1.1" 200 267
981s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 267 Content-Type: application/json Date: Thu, 13 Mar 2025 13:50:08 GMT Keep-Alive: timeout=75, max=1000 Server: Apache/2.4.52 (Ubuntu) Vary: X-Auth-Token x-openstack-request-id: req-5666f9a8-af67-4020-9fb6-1720e896ad9f
981s DEBUG (session:580) RESP BODY: {"version": {"id": "v3.14", "status": "stable", "updated": "2020-04-07T00:00:00Z", "links": [{"rel": "self", "href": "https://keystone.ps6.canonical.com:5000/v3/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.identity-v3+json"}]}}
981s DEBUG (session:946) GET call to https://keystone.ps6.canonical.com:5000/v3 used request id req-5666f9a8-af67-4020-9fb6-1720e896ad9f
981s DEBUG (base:182) Making authentication request to https://keystone.ps6.canonical.com:5000/v3/auth/tokens
981s DEBUG (connectionpool:429) https://keystone.ps6.canonical.com:5000 "POST /v3/auth/tokens HTTP/1.1" 201 12525
981s DEBUG (base:187) {"token": {"methods": ["password"], "user": {"domain": {"id": "default", "name": "Default"}, "id": "c871debdeffd4cb8b69ce618fc4aa361", "name": "prod-proposed-migration-ppc64el", "password_expires_at": null}, "audit_ids": ["1cBrP0ZDTwCGX9FT2hO3GA"], "expires_at": "2025-03-14T13:50:09.000000Z", "issued_at": "2025-03-13T13:50:09.000000Z", "project": {"domain": {"id": "default", "name": "Default"}, "id": "623df63b80274c21bc79a0c35e68d615", "name": "prod-proposed-migration-ppc64el_project"}, "is_domain": false, "roles": [{"id": "86bf3043974746c2bf52c2a9f362f986", "name": "reader"}, {"id": "80674fb26dab46e9a6bd57e7f8193360", "name": "load-balancer_member"}, {"id": "15cf997650e345b7b21c02b5cdb7d84a", "name": "member"}], "is_admin_project": false, "catalog": [{"endpoints": [{"id": "213cdf38198c4581bd5b7d6d0836923b", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/", "region": "prodstack6"}, {"id": "67061eee26944a1a8009f9d07be19738", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/", "region": "prodstack6"}, {"id": "fc88c52c749a47d08a24a2c7efbde01b", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/", "region": "prodstack6"}], "id": "06e4714942634054bf9aa11715312b4e", "type": "s3", "name": "s3"}, {"endpoints": [{"id": "8aa44c94b63746bd9b37f1008ad55fa8", "interface": "admin", "region_id": "prodstack6", "url": "https://aodh-admin.ps6.canonical.com:8042", "region": "prodstack6"}, {"id": "92cf08a80a0242ebbca8ec893cf332b1", "interface": "public", "region_id": "prodstack6", "url": "https://aodh.ps6.canonical.com:8042", "region": "prodstack6"}, {"id": "d8139c6e11ae4edcb78981c12bd53212", "interface": "internal", "region_id": "prodstack6", "url": "https://aodh-internal.ps6.canonical.com:8042", "region": "prodstack6"}], "id": "2fb939b0b969435c8f0c5fa4edb4de94", "type": "alarming", "name": "aodh"}, {"endpoints": [{"id": "a49fcc80e658411885f88cdd8432a571", "interface": "internal", "region_id": "prodstack6", "url": "https://heat-internal.ps6.canonical.com:8000/v1", "region": "prodstack6"}, {"id": "b23866fddba8415885b06c064c34b94b", "interface": "public", "region_id": "prodstack6", "url": "https://heat.ps6.canonical.com:8000/v1", "region": "prodstack6"}, {"id": "f84ae55197f94b8392a678f35c82ca26", "interface": "admin", "region_id": "prodstack6", "url": "https://heat-admin.ps6.canonical.com:8000/v1", "region": "prodstack6"}], "id": "3d4b59f7dab644b2b527e8e96b697545", "type": "cloudformation", "name": "heat-cfn"}, {"endpoints": [{"id": "2e0143334c6241169f45f1c11970c6bc", "interface": "public", "region_id": "prodstack6", "url": "https://heat.ps6.canonical.com:8004/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "5e19c32243c04a3faf1e5f9ab900c260", "interface": "internal", "region_id": "prodstack6", "url": "https://heat-internal.ps6.canonical.com:8004/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "b3fc5c88ec8543a691fec75726b86967", "interface": "admin", "region_id": "prodstack6", "url": "https://heat-admin.ps6.canonical.com:8004/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}], "id": "43b926205044476b8093b18d8ce0a9e4", "type": "orchestration", "name": "heat"}, {"endpoints": [{"id": "a47569b96e5b4146a312e4673504557c", "interface": "public", "region_id": "prodstack6", "url": "https://glance.ps6.canonical.com:9292", "region": "prodstack6"}, {"id": "bba35c4ab04f4114a2a34e65568537bd", "interface": "internal", "region_id": "prodstack6", "url": "https://glance-internal.ps6.canonical.com:9292", "region": "prodstack6"}, {"id": "ef769f1117c74a62a279131486c89628", "interface": "admin", "region_id": "prodstack6", "url": "https://glance-admin.ps6.canonical.com:9292", "region": "prodstack6"}], "id": "49de724549524bd78e9cd46a4477226f", "type": "image", "name": "glance"}, {"endpoints": [{"id": "a1a41e9a1e2d42e5b6cd5380cd1e21bf", "interface": "admin", "region_id": "prodstack6", "url": "https://cinder-admin.ps6.canonical.com:8776/v3/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "d2309a99724b4111827482c68a832c0c", "interface": "public", "region_id": "prodstack6", "url": "https://cinder.ps6.canonical.com:8776/v3/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "f8a02e3949ff42afa772eb5e74dbef9f", "interface": "internal", "region_id": "prodstack6", "url": "https://cinder-internal.ps6.canonical.com:8776/v3/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}], "id": "5bf6578a631349e3af4bf36d7adb18e1", "type": "volumev3", "name": "cinderv3"}, {"endpoints": [{"id": "01d84128f36444e9b01549b86bd69116", "interface": "admin", "region_id": "prodstack6", "url": "https://barbican-admin.ps6.canonical.com:9312", "region": "prodstack6"}, {"id": "0ce4a8777e0b40a88f7fc0f77e34a605", "interface": "public", "region_id": "prodstack6", "url": "https://barbican.ps6.canonical.com:9311", "region": "prodstack6"}, {"id": "f507ba49e4a7435cb330234217c92449", "interface": "internal", "region_id": "prodstack6", "url": "https://barbican-internal.ps6.canonical.com:9311", "region": "prodstack6"}], "id": "62cb1c3d9f6c45979c13516a6b3ff114", "type": "key-manager", "name": "barbican"}, {"endpoints": [{"id": "3cb6121bd8f14da8aa2fba7be823a2b4", "interface": "internal", "region_id": "prodstack6", "url": "https://neutron-internal.ps6.canonical.com:9696", "region": "prodstack6"}, {"id": "46ba11d133fe4e8f9e8f9097ba737682", "interface": "admin", "region_id": "prodstack6", "url": "https://neutron-admin.ps6.canonical.com:9696", "region": "prodstack6"}, {"id": "d872eb6aa23d40009165aa3dcdce3948", "interface": "public", "region_id": "prodstack6", "url": "https://neutron.ps6.canonical.com:9696", "region": "prodstack6"}], "id": "759cb6fdfbc146dd8b9d1ba444c4b9db", "type": "network", "name": "neutron"}, {"endpoints": [{"id": "4349d565f72446da9699269f85df5e8b", "interface": "internal", "region_id": "prodstack6", "url": "https://manila-internal.ps6.canonical.com:8786/v2/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "a483dcc58f5e415e9ec739c94474e609", "interface": "public", "region_id": "prodstack6", "url": "https://manila.ps6.canonical.com:8786/v2/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "c1f14236723e42878562d8dd63d5a6a0", "interface": "admin", "region_id": "prodstack6", "url": "https://manila-admin.ps6.canonical.com:8786/v2/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}], "id": "93fc4008035946deb1f433c2dd905a5d", "type": "sharev2", "name": "manilav2"}, {"endpoints": [{"id": "0fa148793c7249c8b187b6b4ff425731", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/swift/v1/AUTH_e4b04ca58d734ed0aa29e306adad4f79/simplestreams/data", "region": "prodstack6"}, {"id": "555ade266a6b4bcc81b6e5abf607aec5", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/swift/v1/AUTH_e4b04ca58d734ed0aa29e306adad4f79/simplestreams/data", "region": "prodstack6"}, {"id": "7dad1a7b1552465686424fc014463173", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/swift/simplestreams/data", "region": "prodstack6"}], "id": "977dd359af1a4fcc91a9daf4dc33b0f3", "type": "product-streams", "name": "image-stream"}, {"endpoints": [{"id": "12d30eabcdec4831bd15273d55b1cbab", "interface": "internal", "region_id": "prodstack6", "url": "https://manila-internal.ps6.canonical.com:8786/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "29d35b2b483346479f1ff1a13604d50e", "interface": "admin", "region_id": "prodstack6", "url": "https://manila-admin.ps6.canonical.com:8786/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "4aa1422b8f5945d8aed9ba6a8d670e5c", "interface": "public", "region_id": "prodstack6", "url": "https://manila.ps6.canonical.com:8786/v1/623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}], "id": "ac5e4f28fa794cde99f1d7ffc1b664e5", "type": "share", "name": "manila"}, {"endpoints": [{"id": "c7db93d54a684d8caeae1d9e18a59118", "interface": "admin", "region_id": "prodstack6", "url": "https://nova-admin.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}, {"id": "dd7a796f401b477f9f1b5bbc05747d8d", "interface": "public", "region_id": "prodstack6", "url": "https://nova.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}, {"id": "e7ecb038d830462ea67b0b463af5e013", "interface": "internal", "region_id": "prodstack6", "url": "https://nova-internal.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}], "id": "b4519af08e174d4a8333a2d14ac3ba3b", "type": "compute", "name": "nova"}, {"endpoints": [{"id": "02ef5b6154934ffd97d8b5b8e4d70d2a", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/swift/v1/AUTH_623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "2741abe526e94842a4fa801423ba1ef0", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/swift/v1/AUTH_623df63b80274c21bc79a0c35e68d615", "region": "prodstack6"}, {"id": "3742f9406c604516933d6fd8c29e0880", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/swift", "region": "prodstack6"}], "id": "c7f07a7b3b3c408c96200dfd1d1a0f6f", "type": "object-store", "name": "swift"}, {"endpoints": [{"id": "06d4ed6c160a43f2b7fa7f80ad1dc709", "interface": "internal", "region_id": "prodstack6", "url": "https://designate-internal.ps6.canonical.com:9001", "region": "prodstack6"}, {"id": "1e240624a50c4ca0aaa6ef63cbc94f1b", "interface": "admin", "region_id": "prodstack6", "url": "https://designate-admin.ps6.canonical.com:9001", "region": "prodstack6"}, {"id": "f94d7d17997a43fd9c63b34c43301c6e", "interface": "public", "region_id": "prodstack6", "url": "https://designate.ps6.canonical.com:9001", "region": "prodstack6"}], "id": "cf82013d63844fedbe96bcacb6bd1fef", "type": "dns", "name": "designate"}, {"endpoints": [{"id": "4a688340be464710bfa60bf3f88f41c4", "interface": "admin", "region_id": "prodstack6", "url": "https://gnocchi-admin.ps6.canonical.com:8041", "region": "prodstack6"}, {"id": "a5a95506c96d4716adb4efc3ac9051be", "interface": "public", "region_id": "prodstack6", "url": "https://gnocchi.ps6.canonical.com:8041", "region": "prodstack6"}, {"id": "eebc17a086834f8fa8bb6b35c8061a8c", "interface": "internal", "region_id": "prodstack6", "url": "https://gnocchi-internal.ps6.canonical.com:8041", "region": "prodstack6"}], "id": "d10589e854a446a5b852593f33f170a7", "type": "metric", "name": "gnocchi"}, {"endpoints": [{"id": "08f66df28d0f47f3bec12f29e06d85ac", "interface": "admin", "region_id": "prodstack6", "url": "https://keystone-admin.ps6.canonical.com:35357/v3", "region": "prodstack6"}, {"id": "46d270b45ceb42db902f4d241afa6a70", "interface": "public", "region_id": "prodstack6", "url": "https://keystone.ps6.canonical.com:5000/v3", "region": "prodstack6"}, {"id": "a4addee11d9349cfa46ec6660dbad947", "interface": "internal", "region_id": "prodstack6", "url": "https://keystone-internal.ps6.canonical.com:5000/v3", "region": "prodstack6"}], "id": "deb38a775a9b4e87a8de9e3eed779882", "type": "identity", "name": "keystone"}, {"endpoints": [{"id": "18b4af5f40664babb94e884c6a53ccf3", "interface": "admin", "region_id": "prodstack6", "url": "https://octavia-admin.ps6.canonical.com:9876", "region": "prodstack6"}, {"id": "2b6f7ba7f9944ee1aebd6dccc5223b2d", "interface": "internal", "region_id": "prodstack6", "url": "https://octavia-internal.ps6.canonical.com:9876", "region": "prodstack6"}, {"id": "5e3012e9c79e4890be4d964b6208f5c6", "interface": "public", "region_id": "prodstack6", "url": "https://octavia.ps6.canonical.com:9876", "region": "prodstack6"}], "id": "e00337be20d54948b66a1c3109b885c6", "type": "load-balancer", "name": "octavia"}, {"endpoints": [{"id": "2d2942b35f3041389ad810f679d02f22", "interface": "public", "region_id": "prodstack6", "url": "https://placement.ps6.canonical.com:8778", "region": "prodstack6"}, {"id": "2e3beaac7ac14284b72e2592820ad725", "interface": "admin", "region_id": "prodstack6", "url": "https://placement-admin.ps6.canonical.com:8778", "region": "prodstack6"}, {"id": "91060f6df9ae444f81808adf40540d94", "interface": "internal", "region_id": "prodstack6", "url": "https://placement-internal.ps6.canonical.com:8778", "region": "prodstack6"}], "id": "edc6e37f154f4c0ab3dd4d52b82bf873", "type": "placement", "name": "placement"}]}}
981s REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1 -H "Accept: application/json" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}1b10174deaa4779d1b366373be1309dc2364c95387e5cadbed4eaf4e48e34058"
981s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1 -H "Accept: application/json" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}1b10174deaa4779d1b366373be1309dc2364c95387e5cadbed4eaf4e48e34058"
981s DEBUG (connectionpool:962) Starting new HTTPS connection (1): nova.ps6.canonical.com:8774
981s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1 HTTP/1.1" 302 0
981s RESP: [302] Connection: Keep-Alive Content-Length: 0 Content-Type: text/plain; charset=utf8 Date: Thu, 13 Mar 2025 13:50:09 GMT Keep-Alive: timeout=75, max=1000 Location: https://nova.ps6.canonical.com:8774/v2.1/ Server: Apache/2.4.52 (Ubuntu) x-compute-request-id: req-913d0596-6a8b-4786-b0e4-b0fe4a427316 x-openstack-request-id: req-913d0596-6a8b-4786-b0e4-b0fe4a427316
981s DEBUG (session:548) RESP: [302] Connection: Keep-Alive Content-Length: 0 Content-Type: text/plain; charset=utf8 Date: Thu, 13 Mar 2025 13:50:09 GMT Keep-Alive: timeout=75, max=1000 Location: https://nova.ps6.canonical.com:8774/v2.1/ Server: Apache/2.4.52 (Ubuntu) x-compute-request-id: req-913d0596-6a8b-4786-b0e4-b0fe4a427316 x-openstack-request-id: req-913d0596-6a8b-4786-b0e4-b0fe4a427316
981s RESP BODY: Omitted, Content-Type is set to text/plain; charset=utf8. Only application/json responses have their bodies logged.
981s DEBUG (session:580) RESP BODY: Omitted, Content-Type is set to text/plain; charset=utf8. Only application/json responses have their bodies logged.
981s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/ HTTP/1.1" 200 397
981s RESP: [200] Connection: Keep-Alive Content-Length: 397 Content-Type: application/json Date: Thu, 13 Mar 2025 13:50:09 GMT Keep-Alive: timeout=75, max=999 OpenStack-API-Version: compute 2.1 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.1 x-compute-request-id: req-a92fea65-2706-4f29-a407-bf5394cdbf30 x-openstack-request-id: req-a92fea65-2706-4f29-a407-bf5394cdbf30
981s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 397 Content-Type: application/json Date: Thu, 13 Mar 2025 13:50:09 GMT Keep-Alive: timeout=75, max=999 OpenStack-API-Version: compute 2.1 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.1 x-compute-request-id: req-a92fea65-2706-4f29-a407-bf5394cdbf30 x-openstack-request-id: req-a92fea65-2706-4f29-a407-bf5394cdbf30
981s RESP BODY: {"version": {"id": "v2.1", "status": "CURRENT", "version": "2.90", "min_version": "2.1", "updated": "2013-07-23T11:33:21Z", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/"}, {"rel": "describedby", "type": "text/html", "href": "http://docs.openstack.org/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.compute+json;version=2.1"}]}}
981s DEBUG (session:580) RESP BODY: {"version": {"id": "v2.1", "status": "CURRENT", "version": "2.90", "min_version": "2.1", "updated": "2013-07-23T11:33:21Z", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/"}, {"rel": "describedby", "type": "text/html", "href": "http://docs.openstack.org/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.compute+json;version=2.1"}]}}
981s GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/ used request id req-a92fea65-2706-4f29-a407-bf5394cdbf30
981s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/ used request id req-a92fea65-2706-4f29-a407-bf5394cdbf30
981s DEBUG (extension:189) found extension EntryPoint.parse('v1password = swiftclient.authv1:PasswordLoader')
981s DEBUG (extension:189) found extension EntryPoint.parse('noauth = cinderclient.contrib.noauth:CinderNoAuthLoader')
981s DEBUG (extension:189) found extension EntryPoint.parse('admin_token = keystoneauth1.loading._plugins.admin_token:AdminToken')
981s DEBUG (extension:189) found extension EntryPoint.parse('none = keystoneauth1.loading._plugins.noauth:NoAuth')
981s DEBUG (extension:189) found extension EntryPoint.parse('password = keystoneauth1.loading._plugins.identity.generic:Password')
981s DEBUG (extension:189) found extension EntryPoint.parse('token = keystoneauth1.loading._plugins.identity.generic:Token')
981s DEBUG (extension:189) found extension EntryPoint.parse('v2password = keystoneauth1.loading._plugins.identity.v2:Password')
981s DEBUG (extension:189) found extension EntryPoint.parse('v2token = keystoneauth1.loading._plugins.identity.v2:Token')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3adfspassword = keystoneauth1.extras._saml2._loading:ADFSPassword')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3applicationcredential = keystoneauth1.loading._plugins.identity.v3:ApplicationCredential')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3fedkerb = keystoneauth1.extras.kerberos._loading:MappedKerberos')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3kerberos = keystoneauth1.extras.kerberos._loading:Kerberos')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3multifactor = keystoneauth1.loading._plugins.identity.v3:MultiFactor')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3oauth1 = keystoneauth1.extras.oauth1._loading:V3OAuth1')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcaccesstoken = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAccessToken')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcauthcode = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAuthorizationCode')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcclientcredentials = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectClientCredentials')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcpassword = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectPassword')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3password = keystoneauth1.loading._plugins.identity.v3:Password')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3samlpassword = keystoneauth1.extras._saml2._loading:Saml2Password')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3token = keystoneauth1.loading._plugins.identity.v3:Token')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3tokenlessauth = keystoneauth1.loading._plugins.identity.v3:TokenlessAuth')
981s DEBUG (extension:189) found extension EntryPoint.parse('v3totp = keystoneauth1.loading._plugins.identity.v3:TOTP')
981s DEBUG (session:517) REQ: curl -g -i -X GET https://glance.ps6.canonical.com:9292/v2/images/039b69e3-5f2d-4af8-9d4f-d440c2e5edc9 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}1b10174deaa4779d1b366373be1309dc2364c95387e5cadbed4eaf4e48e34058" -H "X-OpenStack-Nova-API-Version: 2.87"
981s DEBUG (connectionpool:962) Starting new HTTPS connection (1): glance.ps6.canonical.com:9292
981s DEBUG (connectionpool:429) https://glance.ps6.canonical.com:9292 "GET /v2/images/039b69e3-5f2d-4af8-9d4f-d440c2e5edc9 HTTP/1.1" 200 2294
981s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 2294 Content-Type: application/json Date: Thu, 13 Mar 2025 13:50:09 GMT Keep-Alive: timeout=75, max=1000 Server: Apache/2.4.52 (Ubuntu) X-Openstack-Request-Id: req-0fd86218-5f76-4eb7-a879-94bd71b61dca
981s DEBUG (session:580) RESP BODY: {"architecture": "ppc64le", "base_image_ref": "75c910fb-86d3-481a-a4b6-c4670f38d780", "boot_roles": "load-balancer_member,member,reader", "content_id": "auto.sync", "hw_cdrom_bus": "scsi", "hw_disk_bus": "virtio", "hw_machine_type": "pseries", "hw_video_model": "vga", "hw_vif_model": "virtio", "image_location": "snapshot", "image_state": "available", "image_type": "snapshot", "instance_uuid": "c9d53ef4-df89-4f85-932b-8de087b24463", "item_name": "disk1.img", "os_distro": "ubuntu", "os_version": "25.04", "owner_id": "623df63b80274c21bc79a0c35e68d615", "owner_project_name": "prod-proposed-migration-ppc64el_project", "owner_user_name": "prod-proposed-migration-ppc64el", "product_name": "com.ubuntu.cloud.daily:server:25.04:ppc64el", "simplestreams_metadata": "{\"aliases\": \"25.04,p,plucky,devel\", \"arch\": \"ppc64el\", \"ftype\": \"disk1.img\", \"label\": \"daily\", \"md5\": \"75cf4ebffa6ce75c5396564290b6a8f7\", \"os\": \"ubuntu\", \"pubname\": \"ubuntu-plucky-daily-ppc64el-server-20250113\", \"release\": \"plucky\", \"release_codename\": \"P", "source_content_id": "com.ubuntu.cloud:daily:download", "user_id": "c871debdeffd4cb8b69ce618fc4aa361", "version_name": "20250113", "name": "adt/ubuntu-plucky-ppc64el-server-20250313.img", "disk_format": "qcow2", "container_format": "bare", "visibility": "private", "size": 3198746624, "virtual_size": 21474836480, "status": "active", "checksum": "5f41ad4cebfd4fa16ffb06085b73dd6e", "protected": false, "min_ram": 0, "min_disk": 20, "owner": "623df63b80274c21bc79a0c35e68d615", "os_hidden": false, "os_hash_algo": "sha512", "os_hash_value": "a59cbe11dfbe30a2e30ad6160ed8a928ac814470060c2d015695c01c610413084f989a8674402eed914fa37eabd3efff0e510e16100baaa0569cbb42afa27720", "id": "039b69e3-5f2d-4af8-9d4f-d440c2e5edc9", "created_at": "2025-03-13T03:29:13Z", "updated_at": "2025-03-13T03:29:53Z", "locations": [{"url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/039b69e3-5f2d-4af8-9d4f-d440c2e5edc9/snap", "metadata": {"store": "ceph"}}], "direct_url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/039b69e3-5f2d-4af8-9d4f-d440c2e5edc9/snap", "tags": [], "self": "/v2/images/039b69e3-5f2d-4af8-9d4f-d440c2e5edc9", "file": "/v2/images/039b69e3-5f2d-4af8-9d4f-d440c2e5edc9/file", "schema": "/v2/schemas/image", "stores": "ceph"}
981s DEBUG (session:936) GET call to image for https://glance.ps6.canonical.com:9292/v2/images/039b69e3-5f2d-4af8-9d4f-d440c2e5edc9 used request id req-0fd86218-5f76-4eb7-a879-94bd71b61dca
981s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors/autopkgtest-ppc64el -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}1b10174deaa4779d1b366373be1309dc2364c95387e5cadbed4eaf4e48e34058" -H "X-OpenStack-Nova-API-Version: 2.87"
981s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors/autopkgtest-ppc64el HTTP/1.1" 404 92
981s DEBUG (session:548) RESP: [404] Connection: Keep-Alive Content-Length: 92 Content-Type: application/json; charset=UTF-8 Date: Thu, 13 Mar 2025 13:50:09 GMT Keep-Alive: timeout=75, max=998 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-456098fd-80eb-4d01-9d42-a89f511ef8b2 x-openstack-request-id: req-456098fd-80eb-4d01-9d42-a89f511ef8b2
981s DEBUG (session:580) RESP BODY: {"itemNotFound": {"code": 404, "message": "Flavor autopkgtest-ppc64el could not be found."}}
981s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors/autopkgtest-ppc64el used request id req-456098fd-80eb-4d01-9d42-a89f511ef8b2
981s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors?is_public=None -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}1b10174deaa4779d1b366373be1309dc2364c95387e5cadbed4eaf4e48e34058" -H "X-OpenStack-Nova-API-Version: 2.87"
981s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors?is_public=None HTTP/1.1" 200 39839
981s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 39839 Content-Type: application/json Date: Thu, 13 Mar 2025 13:50:09 GMT Keep-Alive: timeout=75, max=997 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-b38d0ebd-f16c-4b55-b741-54d177b90367 x-openstack-request-id: req-b38d0ebd-f16c-4b55-b741-54d177b90367
981s DEBUG (session:580) RESP BODY: {"flavors": [{"id": "05338e57-e2ba-4813-9a8a-2f2af73f8ab2", "name": "builder-ppc64el-cpu2-ram4-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/05338e57-e2ba-4813-9a8a-2f2af73f8ab2"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/05338e57-e2ba-4813-9a8a-2f2af73f8ab2"}], "description": null}, {"id": "08090b4b-98a9-4c15-8ad4-cc6711700879", "name": "builder-ppc64el-cpu8-ram64-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/08090b4b-98a9-4c15-8ad4-cc6711700879"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/08090b4b-98a9-4c15-8ad4-cc6711700879"}], "description": null}, {"id": "0825b8b1-2b9c-42bf-b3e6-e827c22d8df5", "name": "builder-ppc64el-cpu8-ram4-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/0825b8b1-2b9c-42bf-b3e6-e827c22d8df5"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/0825b8b1-2b9c-42bf-b3e6-e827c22d8df5"}], "description": null}, {"id": "0b06db45-151e-44b2-b0f5-f069ad7fa1cb", "name": "builder-ppc64el-cpu2-ram12-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/0b06db45-151e-44b2-b0f5-f069ad7fa1cb"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/0b06db45-151e-44b2-b0f5-f069ad7fa1cb"}], "description": null}, {"id": "0dbf127e-3101-4f05-9d37-15ad6d2a45c1", "name": "builder-ppc64el-cpu2-ram16-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/0dbf127e-3101-4f05-9d37-15ad6d2a45c1"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/0dbf127e-3101-4f05-9d37-15ad6d2a45c1"}], "description": null}, {"id": "102d0b57-e8d2-46c6-9be4-f452119a0280", "name": "autopkgtest-ppc64el", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280"}], "description": null}, {"id": "1219f5f0-83f3-4d33-a3bb-1a85c6303159", "name": "builder-ppc64el-cpu128-ram64-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/1219f5f0-83f3-4d33-a3bb-1a85c6303159"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/1219f5f0-83f3-4d33-a3bb-1a85c6303159"}], "description": null}, {"id": "1359c5a4-ee60-4855-9bcc-defd3bff7121", "name": "builder-ppc64el-cpu8-ram8-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/1359c5a4-ee60-4855-9bcc-defd3bff7121"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/1359c5a4-ee60-4855-9bcc-defd3bff7121"}], "description": null}, {"id": "161f21bc-11f7-4ec9-a322-04fc3e0d2a68", "name": "builder-ppc64el-cpu2-ram55-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/161f21bc-11f7-4ec9-a322-04fc3e0d2a68"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/161f21bc-11f7-4ec9-a322-04fc3e0d2a68"}], "description": null}, {"id": "166070cd-7110-473e-a6a2-5e25aa9eeefd", "name": "builder-ppc64el-cpu4-ram64-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/166070cd-7110-473e-a6a2-5e25aa9eeefd"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/166070cd-7110-473e-a6a2-5e25aa9eeefd"}], "description": null}, {"id": "16a0a259-4627-4fbd-bb9d-a3e69346467c", "name": "builder-ppc64el-cpu8-ram64-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/16a0a259-4627-4fbd-bb9d-a3e69346467c"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/16a0a259-4627-4fbd-bb9d-a3e69346467c"}], "description": null}, {"id": "1c59e50a-1a67-4691-8f2c-6954cb0f83ba", "name": "builder-ppc64el-cpu4-ram128-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/1c59e50a-1a67-4691-8f2c-6954cb0f83ba"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/1c59e50a-1a67-4691-8f2c-6954cb0f83ba"}], "description": null}, {"id": "1c94efa8-905a-4bff-8485-0aaf9ac47fe7", "name": "builder-ppc64el-cpu4-ram16-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/1c94efa8-905a-4bff-8485-0aaf9ac47fe7"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/1c94efa8-905a-4bff-8485-0aaf9ac47fe7"}], "description": null}, {"id": "213c954d-26ed-4c86-9592-66384bc22c82", "name": "builder-ppc64el-cpu4-ram16-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/213c954d-26ed-4c86-9592-66384bc22c82"}, {"rel": "bookmark", "href": 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"https://nova.ps6.canonical.com:8774/flavors/e628d527-f077-426d-9380-5eea778aabc2"}], "description": null}, {"id": "e752e039-cbe4-4a16-8197-de87ba42b83e", "name": "builder-ppc64el-cpu64-ram256-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/e752e039-cbe4-4a16-8197-de87ba42b83e"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/e752e039-cbe4-4a16-8197-de87ba42b83e"}], "description": null}, {"id": "e7f811c8-a60c-45c6-86c8-8e4b025751df", "name": "builder-ppc64el-cpu4-ram16-disk40", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/e7f811c8-a60c-45c6-86c8-8e4b025751df"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/e7f811c8-a60c-45c6-86c8-8e4b025751df"}], "description": null}, {"id": "eb80d7e2-b6e1-42a5-b80d-3dad861f6989", "name": "builder-ppc64el-cpu16-ram4-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/eb80d7e2-b6e1-42a5-b80d-3dad861f6989"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/eb80d7e2-b6e1-42a5-b80d-3dad861f6989"}], "description": null}, {"id": "ed127e2b-02b8-4e61-bf10-0c89b90928e6", "name": "builder-ppc64el-cpu64-ram128-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/ed127e2b-02b8-4e61-bf10-0c89b90928e6"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/ed127e2b-02b8-4e61-bf10-0c89b90928e6"}], "description": null}, {"id": "ef7301a7-71f4-48ac-b387-23251f4060e1", "name": "builder-ppc64el-cpu16-ram8-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/ef7301a7-71f4-48ac-b387-23251f4060e1"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/ef7301a7-71f4-48ac-b387-23251f4060e1"}], "description": null}, {"id": "f0f1af4d-f230-40c1-b789-c94e02a68daa", "name": "builder-ppc64el-cpu16-ram8-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/f0f1af4d-f230-40c1-b789-c94e02a68daa"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/f0f1af4d-f230-40c1-b789-c94e02a68daa"}], "description": null}, {"id": "f40b2dbc-5d69-40b0-a9fc-71c32de93ca3", "name": "autopkgtest-big-ppc64el", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/f40b2dbc-5d69-40b0-a9fc-71c32de93ca3"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/f40b2dbc-5d69-40b0-a9fc-71c32de93ca3"}], "description": null}, {"id": "f6aae414-e26b-4692-95d4-d851b6993c2a", "name": "builder-ppc64el-cpu2-ram8-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/f6aae414-e26b-4692-95d4-d851b6993c2a"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/f6aae414-e26b-4692-95d4-d851b6993c2a"}], "description": null}, {"id": "f91b245b-ad92-47f6-8861-d1e070fcc19c", "name": "builder-ppc64el-cpu2-ram64-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/f91b245b-ad92-47f6-8861-d1e070fcc19c"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/f91b245b-ad92-47f6-8861-d1e070fcc19c"}], "description": null}, {"id": "fa3bbba4-5e72-4ca3-9661-ccf45947bbf5", "name": "builder-ppc64el-cpu16-ram4-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/fa3bbba4-5e72-4ca3-9661-ccf45947bbf5"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/fa3bbba4-5e72-4ca3-9661-ccf45947bbf5"}], "description": null}, {"id": "ff4cf1ee-6e00-49b7-9d11-fafa69b910df", "name": "builder-ppc64el-cpu8-ram32-disk40", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/ff4cf1ee-6e00-49b7-9d11-fafa69b910df"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/ff4cf1ee-6e00-49b7-9d11-fafa69b910df"}], "description": null}]}
981s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors?is_public=None used request id req-b38d0ebd-f16c-4b55-b741-54d177b90367
981s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}1b10174deaa4779d1b366373be1309dc2364c95387e5cadbed4eaf4e48e34058" -H "X-OpenStack-Nova-API-Version: 2.87"
981s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280 HTTP/1.1" 200 623
981s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 623 Content-Type: application/json Date: Thu, 13 Mar 2025 13:50:10 GMT Keep-Alive: timeout=75, max=996 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-4f3c0265-1a3c-444a-9b0f-5bc9ff9960c8 x-openstack-request-id: req-4f3c0265-1a3c-444a-9b0f-5bc9ff9960c8
981s DEBUG (session:580) RESP BODY: {"flavor": {"id": "102d0b57-e8d2-46c6-9be4-f452119a0280", "name": "autopkgtest-ppc64el", "ram": 4096, "disk": 20, "swap": 0, "OS-FLV-EXT-DATA:ephemeral": 0, "OS-FLV-DISABLED:disabled": false, "vcpus": 2, "os-flavor-access:is_public": false, "rxtx_factor": 1.0, "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280"}], "description": null, "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-ppc64el", "hw_rng:allowed": "True"}}}
981s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors/102d0b57-e8d2-46c6-9be4-f452119a0280 used request id req-4f3c0265-1a3c-444a-9b0f-5bc9ff9960c8
981s DEBUG (session:517) REQ: curl -g -i -X POST https://nova.ps6.canonical.com:8774/v2.1/servers -H "Accept: application/json" -H "Content-Type: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}1b10174deaa4779d1b366373be1309dc2364c95387e5cadbed4eaf4e48e34058" -H "X-OpenStack-Nova-API-Version: 2.87" -d '{"server": {"name": "adt-plucky-ppc64el-cctbx-20250313-110403-juju-7f2275-prod-proposed-migration-environment-20-6fe9cf99-60ca-4967-b7c1-5270bc9e095a", "imageRef": "039b69e3-5f2d-4af8-9d4f-d440c2e5edc9", "flavorRef": "102d0b57-e8d2-46c6-9be4-f452119a0280", "user_data": "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", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-20", "min_count": 1, "max_count": 1, "security_groups": [{"name": "autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-3.secgroup"}], "networks": [{"uuid": "3083d638-5564-4f5c-97ef-09f045123d20"}]}}'
981s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "POST /v2.1/servers HTTP/1.1" 202 478
981s DEBUG (session:548) RESP: [202] Connection: Keep-Alive Content-Length: 478 Content-Type: application/json Date: Thu, 13 Mar 2025 13:50:10 GMT Keep-Alive: timeout=75, max=995 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 location: https://nova.ps6.canonical.com:8774/v2.1/servers/7976505f-7271-4738-889d-02d5469c8e19 x-compute-request-id: req-d8bc3225-dfa7-4fc7-9d71-73437f0977b4 x-openstack-request-id: req-d8bc3225-dfa7-4fc7-9d71-73437f0977b4
981s DEBUG (session:580) RESP BODY: {"server": {"id": "7976505f-7271-4738-889d-02d5469c8e19", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/servers/7976505f-7271-4738-889d-02d5469c8e19"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/servers/7976505f-7271-4738-889d-02d5469c8e19"}], "OS-DCF:diskConfig": "MANUAL", "security_groups": [{"name": "autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-3.secgroup"}], "adminPass": "5RRty8CS4rA2"}}
981s DEBUG (session:936) POST call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers used request id req-d8bc3225-dfa7-4fc7-9d71-73437f0977b4
981s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/servers/7976505f-7271-4738-889d-02d5469c8e19 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}1b10174deaa4779d1b366373be1309dc2364c95387e5cadbed4eaf4e48e34058" -H "X-OpenStack-Nova-API-Version: 2.87"
981s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/servers/7976505f-7271-4738-889d-02d5469c8e19 HTTP/1.1" 200 3233
981s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 3233 Content-Type: application/json Date: Thu, 13 Mar 2025 13:50:10 GMT Keep-Alive: timeout=75, max=994 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-674d282f-b33f-423b-a3e0-02dcfd141ba7 x-openstack-request-id: req-674d282f-b33f-423b-a3e0-02dcfd141ba7
981s DEBUG (session:580) RESP BODY: {"server": {"id": "7976505f-7271-4738-889d-02d5469c8e19", "name": "adt-plucky-ppc64el-cctbx-20250313-110403-juju-7f2275-prod-proposed-migration-environment-20-6fe9cf99-60ca-4967-b7c1-5270bc9e095a", "status": "BUILD", "tenant_id": "623df63b80274c21bc79a0c35e68d615", "user_id": "c871debdeffd4cb8b69ce618fc4aa361", "metadata": {}, "hostId": "", "image": {"id": "039b69e3-5f2d-4af8-9d4f-d440c2e5edc9", "links": [{"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/images/039b69e3-5f2d-4af8-9d4f-d440c2e5edc9"}]}, "flavor": {"vcpus": 2, "ram": 4096, "disk": 20, "ephemeral": 0, "swap": 0, "original_name": "autopkgtest-ppc64el", "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-ppc64el", "hw_rng:allowed": "True"}}, "created": "2025-03-13T13:50:11Z", "updated": "2025-03-13T13:50:10Z", "addresses": {}, "accessIPv4": "", "accessIPv6": "", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/servers/7976505f-7271-4738-889d-02d5469c8e19"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/servers/7976505f-7271-4738-889d-02d5469c8e19"}], "OS-DCF:diskConfig": "MANUAL", "progress": 0, "OS-EXT-AZ:availability_zone": "", "config_drive": "", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-20", "OS-SRV-USG:launched_at": null, "OS-SRV-USG:terminated_at": null, "OS-EXT-SRV-ATTR:host": null, "OS-EXT-SRV-ATTR:instance_name": "", "OS-EXT-SRV-ATTR:hypervisor_hostname": null, "OS-EXT-SRV-ATTR:reservation_id": "r-d4fumais", "OS-EXT-SRV-ATTR:launch_index": 0, "OS-EXT-SRV-ATTR:hostname": "adt-plucky-ppc64el-cctbx-20250313-110403-juju-7f2275-prod-propo", "OS-EXT-SRV-ATTR:kernel_id": "", "OS-EXT-SRV-ATTR:ramdisk_id": "", "OS-EXT-SRV-ATTR:root_device_name": null, "OS-EXT-SRV-ATTR:user_data": "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", "OS-EXT-STS:task_state": "scheduling", "OS-EXT-STS:vm_state": "building", "OS-EXT-STS:power_state": 0, "os-extended-volumes:volumes_attached": [], "locked": false, "locked_reason": null, "description": null, "tags": [], "trusted_image_certificates": null, "server_groups": []}}
981s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers/7976505f-7271-4738-889d-02d5469c8e19 used request id req-674d282f-b33f-423b-a3e0-02dcfd141ba7
981s DEBUG (session:517) REQ: curl -g -i -X GET https://glance.ps6.canonical.com:9292/v2/images/039b69e3-5f2d-4af8-9d4f-d440c2e5edc9 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}1b10174deaa4779d1b366373be1309dc2364c95387e5cadbed4eaf4e48e34058" -H "X-OpenStack-Nova-API-Version: 2.87"
981s DEBUG (connectionpool:429) https://glance.ps6.canonical.com:9292 "GET /v2/images/039b69e3-5f2d-4af8-9d4f-d440c2e5edc9 HTTP/1.1" 200 2294
981s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 2294 Content-Type: application/json Date: Thu, 13 Mar 2025 13:50:10 GMT Keep-Alive: timeout=75, max=999 Server: Apache/2.4.52 (Ubuntu) X-Openstack-Request-Id: req-af745e9c-d998-4a89-8969-108b859089c6
981s DEBUG (session:580) RESP BODY: {"architecture": "ppc64le", "base_image_ref": "75c910fb-86d3-481a-a4b6-c4670f38d780", "boot_roles": "load-balancer_member,member,reader", "content_id": "auto.sync", "hw_cdrom_bus": "scsi", "hw_disk_bus": "virtio", "hw_machine_type": "pseries", "hw_video_model": "vga", "hw_vif_model": "virtio", "image_location": "snapshot", "image_state": "available", "image_type": "snapshot", "instance_uuid": "c9d53ef4-df89-4f85-932b-8de087b24463", "item_name": "disk1.img", "os_distro": "ubuntu", "os_version": "25.04", "owner_id": "623df63b80274c21bc79a0c35e68d615", "owner_project_name": "prod-proposed-migration-ppc64el_project", "owner_user_name": "prod-proposed-migration-ppc64el", "product_name": "com.ubuntu.cloud.daily:server:25.04:ppc64el", "simplestreams_metadata": "{\"aliases\": \"25.04,p,plucky,devel\", \"arch\": \"ppc64el\", \"ftype\": \"disk1.img\", \"label\": \"daily\", \"md5\": \"75cf4ebffa6ce75c5396564290b6a8f7\", \"os\": \"ubuntu\", \"pubname\": \"ubuntu-plucky-daily-ppc64el-server-20250113\", \"release\": \"plucky\", \"release_codename\": \"P", "source_content_id": "com.ubuntu.cloud:daily:download", "user_id": "c871debdeffd4cb8b69ce618fc4aa361", "version_name": "20250113", "name": "adt/ubuntu-plucky-ppc64el-server-20250313.img", "disk_format": "qcow2", "container_format": "bare", "visibility": "private", "size": 3198746624, "virtual_size": 21474836480, "status": "active", "checksum": "5f41ad4cebfd4fa16ffb06085b73dd6e", "protected": false, "min_ram": 0, "min_disk": 20, "owner": "623df63b80274c21bc79a0c35e68d615", "os_hidden": false, "os_hash_algo": "sha512", "os_hash_value": "a59cbe11dfbe30a2e30ad6160ed8a928ac814470060c2d015695c01c610413084f989a8674402eed914fa37eabd3efff0e510e16100baaa0569cbb42afa27720", "id": "039b69e3-5f2d-4af8-9d4f-d440c2e5edc9", "created_at": "2025-03-13T03:29:13Z", "updated_at": "2025-03-13T03:29:53Z", "locations": [{"url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/039b69e3-5f2d-4af8-9d4f-d440c2e5edc9/snap", "metadata": {"store": "ceph"}}], "direct_url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/039b69e3-5f2d-4af8-9d4f-d440c2e5edc9/snap", "tags": [], "self": "/v2/images/039b69e3-5f2d-4af8-9d4f-d440c2e5edc9", "file": "/v2/images/039b69e3-5f2d-4af8-9d4f-d440c2e5edc9/file", "schema": "/v2/schemas/image", "stores": "ceph"}
981s DEBUG (session:936) GET call to image for https://glance.ps6.canonical.com:9292/v2/images/039b69e3-5f2d-4af8-9d4f-d440c2e5edc9 used request id req-af745e9c-d998-4a89-8969-108b859089c6
981s +--------------------------------------+----------------------------------------------------------------------------------------------------------------------------------+
981s | Property                             | Value                                                                                                                            |
981s +--------------------------------------+----------------------------------------------------------------------------------------------------------------------------------+
981s | OS-DCF:diskConfig                    | MANUAL                                                                                                                           |
981s | OS-EXT-AZ:availability_zone          |                                                                                                                                  |
981s | OS-EXT-SRV-ATTR:host                 | -                                                                                                                                |
981s | OS-EXT-SRV-ATTR:hostname             | adt-plucky-ppc64el-cctbx-20250313-110403-juju-7f2275-prod-propo                                                                  |
981s | OS-EXT-SRV-ATTR:hypervisor_hostname  | -                                                                                                                                |
981s | OS-EXT-SRV-ATTR:instance_name        |                                                                                                                                  |
981s | OS-EXT-SRV-ATTR:kernel_id            |                                                                                                                                  |
981s | OS-EXT-SRV-ATTR:launch_index         | 0                                                                                                                                |
981s | OS-EXT-SRV-ATTR:ramdisk_id           |                                                                                                                                  |
981s | OS-EXT-SRV-ATTR:reservation_id       | r-d4fumais                                                                                                                       |
981s | OS-EXT-SRV-ATTR:root_device_name     | -                                                                                                                                |
981s | OS-EXT-STS:power_state               | 0                                                                                                                                |
981s | OS-EXT-STS:task_state                | scheduling                                                                                                                       |
981s | OS-EXT-STS:vm_state                  | building                                                                                                                         |
981s | OS-SRV-USG:launched_at               | -                                                                                                                                |
981s | OS-SRV-USG:terminated_at             | -                                                                                                                                |
981s | accessIPv4                           |                                                                                                                                  |
981s | accessIPv6                           |                                                                                                                                  |
981s | adminPass                            | 5RRty8CS4rA2                                                                                                                     |
981s | config_drive                         |                                                                                                                                  |
981s | created                              | 2025-03-13T13:50:11Z                                                                                                             |
981s | description                          | -                                                                                                                                |
981s | flavor:disk                          | 20                                                                                                                               |
981s | flavor:ephemeral                     | 0                                                                                                                                |
981s | flavor:extra_specs                   | {"aggregate_instance_extra_specs:commit": "builder-ppc64el", "hw_rng:allowed": "True"}                                           |
981s | flavor:original_name                 | autopkgtest-ppc64el                                                                                                              |
981s | flavor:ram                           | 4096                                                                                                                             |
981s | flavor:swap                          | 0                                                                                                                                |
981s | flavor:vcpus                         | 2                                                                                                                                |
981s | hostId                               |                                                                                                                                  |
981s | id                                   | 7976505f-7271-4738-889d-02d5469c8e19                                                                                             |
981s | image                                | adt/ubuntu-plucky-ppc64el-server-20250313.img (039b69e3-5f2d-4af8-9d4f-d440c2e5edc9)                                             |
981s | key_name                             | testbed-juju-7f2275-prod-proposed-migration-environment-20                                                                       |
981s | locked                               | False                                                                                                                            |
981s | locked_reason                        | -                                                                                                                                |
981s | metadata                             | {}                                                                                                                               |
981s | name                                 | adt-plucky-ppc64el-cctbx-20250313-110403-juju-7f2275-prod-proposed-migration-environment-20-6fe9cf99-60ca-4967-b7c1-5270bc9e095a |
981s | os-extended-volumes:volumes_attached | []                                                                                                                               |
981s | progress                             | 0                                                                                                                                |
981s | security_groups                      | autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-ppc64el-3.secgroup                                          |
981s | server_groups                        | []                                                                                                                               |
981s | status                               | BUILD                                                                                                                            |
981s | tags                                 | []                                                                                                                               |
981s | tenant_id                            | 623df63b80274c21bc79a0c35e68d615                                                                                                 |
981s | trusted_image_certificates           | -                                                                                                                                |
981s | updated                              | 2025-03-13T13:50:10Z                                                                                                             |
981s | user_id                              | c871debdeffd4cb8b69ce618fc4aa361                                                                                                 |
981s +--------------------------------------+----------------------------------------------------------------------------------------------------------------------------------+DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/servers/7976505f-7271-4738-889d-02d5469c8e19 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}1b10174deaa4779d1b366373be1309dc2364c95387e5cadbed4eaf4e48e34058" -H "X-OpenStack-Nova-API-Version: 2.87"
981s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/servers/7976505f-7271-4738-889d-02d5469c8e19 HTTP/1.1" 200 3233
981s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 3233 Content-Type: application/json Date: Thu, 13 Mar 2025 13:50:11 GMT Keep-Alive: timeout=75, max=993 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-f166c7f7-8cb9-49da-b2bb-d95028141b66 x-openstack-request-id: req-f166c7f7-8cb9-49da-b2bb-d95028141b66
981s DEBUG (session:580) RESP BODY: {"server": {"id": "7976505f-7271-4738-889d-02d5469c8e19", "name": "adt-plucky-ppc64el-cctbx-20250313-110403-juju-7f2275-prod-proposed-migration-environment-20-6fe9cf99-60ca-4967-b7c1-5270bc9e095a", "status": "BUILD", "tenant_id": "623df63b80274c21bc79a0c35e68d615", "user_id": "c871debdeffd4cb8b69ce618fc4aa361", "metadata": {}, "hostId": "", "image": {"id": "039b69e3-5f2d-4af8-9d4f-d440c2e5edc9", "links": [{"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/images/039b69e3-5f2d-4af8-9d4f-d440c2e5edc9"}]}, "flavor": {"vcpus": 2, "ram": 4096, "disk": 20, "ephemeral": 0, "swap": 0, "original_name": "autopkgtest-ppc64el", "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-ppc64el", "hw_rng:allowed": "True"}}, "created": "2025-03-13T13:50:11Z", "updated": "2025-03-13T13:50:11Z", "addresses": {}, "accessIPv4": "", "accessIPv6": "", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/servers/7976505f-7271-4738-889d-02d5469c8e19"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/servers/7976505f-7271-4738-889d-02d5469c8e19"}], "OS-DCF:diskConfig": "MANUAL", "progress": 0, "OS-EXT-AZ:availability_zone": "", "config_drive": "", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-20", "OS-SRV-USG:launched_at": null, "OS-SRV-USG:terminated_at": null, "OS-EXT-SRV-ATTR:host": null, "OS-EXT-SRV-ATTR:instance_name": "", "OS-EXT-SRV-ATTR:hypervisor_hostname": null, "OS-EXT-SRV-ATTR:reservation_id": "r-d4fumais", "OS-EXT-SRV-ATTR:launch_index": 0, "OS-EXT-SRV-ATTR:hostname": "adt-plucky-ppc64el-cctbx-20250313-110403-juju-7f2275-prod-propo", "OS-EXT-SRV-ATTR:kernel_id": "", "OS-EXT-SRV-ATTR:ramdisk_id": "", "OS-EXT-SRV-ATTR:root_device_name": null, "OS-EXT-SRV-ATTR:user_data": "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", "OS-EXT-STS:task_state": "scheduling", "OS-EXT-STS:vm_state": "building", "OS-EXT-STS:power_state": 0, "os-extended-volumes:volumes_attached": [], "locked": false, "locked_reason": null, "description": null, "tags": [], "trusted_image_certificates": null, "server_groups": []}}
981s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers/7976505f-7271-4738-889d-02d5469c8e19 used request id req-f166c7f7-8cb9-49da-b2bb-d95028141b66
981s 
981s 
981s 
Server building... 0% completeDEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/servers/7976505f-7271-4738-889d-02d5469c8e19 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}1b10174deaa4779d1b366373be1309dc2364c95387e5cadbed4eaf4e48e34058" -H "X-OpenStack-Nova-API-Version: 2.87"
981s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/servers/7976505f-7271-4738-889d-02d5469c8e19 HTTP/1.1" 200 3360
981s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 3360 Content-Type: application/json Date: Thu, 13 Mar 2025 13:50:16 GMT Keep-Alive: timeout=75, max=992 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-c8069557-b2b6-4159-b3ca-fe9870c7d6c9 x-openstack-request-id: req-c8069557-b2b6-4159-b3ca-fe9870c7d6c9
981s DEBUG (session:580) RESP BODY: {"server": {"id": "7976505f-7271-4738-889d-02d5469c8e19", "name": "adt-plucky-ppc64el-cctbx-20250313-110403-juju-7f2275-prod-proposed-migration-environment-20-6fe9cf99-60ca-4967-b7c1-5270bc9e095a", "status": "ERROR", "tenant_id": "623df63b80274c21bc79a0c35e68d615", "user_id": "c871debdeffd4cb8b69ce618fc4aa361", "metadata": {}, "hostId": "", "image": {"id": "039b69e3-5f2d-4af8-9d4f-d440c2e5edc9", "links": [{"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/images/039b69e3-5f2d-4af8-9d4f-d440c2e5edc9"}]}, "flavor": {"vcpus": 2, "ram": 4096, "disk": 20, "ephemeral": 0, "swap": 0, "original_name": "autopkgtest-ppc64el", "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-ppc64el", "hw_rng:allowed": "True"}}, "created": "2025-03-13T13:50:10Z", "updated": "2025-03-13T13:50:11Z", "addresses": {}, "accessIPv4": "", "accessIPv6": "", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/servers/7976505f-7271-4738-889d-02d5469c8e19"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/servers/7976505f-7271-4738-889d-02d5469c8e19"}], "OS-DCF:diskConfig": "MANUAL", "fault": {"code": 500, "created": "2025-03-13T13:50:11Z", "message": "No valid host was found. There are not enough hosts available."}, "OS-EXT-AZ:availability_zone": "", "config_drive": "", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-20", "OS-SRV-USG:launched_at": null, "OS-SRV-USG:terminated_at": null, "OS-EXT-SRV-ATTR:host": null, "OS-EXT-SRV-ATTR:instance_name": "instance-000d5794", "OS-EXT-SRV-ATTR:hypervisor_hostname": null, "OS-EXT-SRV-ATTR:reservation_id": "r-d4fumais", "OS-EXT-SRV-ATTR:launch_index": 0, "OS-EXT-SRV-ATTR:hostname": "adt-plucky-ppc64el-cctbx-20250313-110403-juju-7f2275-prod-propo", "OS-EXT-SRV-ATTR:kernel_id": "", "OS-EXT-SRV-ATTR:ramdisk_id": "", "OS-EXT-SRV-ATTR:root_device_name": null, "OS-EXT-SRV-ATTR:user_data": "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", "OS-EXT-STS:task_state": null, "OS-EXT-STS:vm_state": "error", "OS-EXT-STS:power_state": 0, "os-extended-volumes:volumes_attached": [], "locked": false, "locked_reason": null, "description": null, "tags": [], "trusted_image_certificates": null, "server_groups": []}}
981s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers/7976505f-7271-4738-889d-02d5469c8e19 used request id req-c8069557-b2b6-4159-b3ca-fe9870c7d6c9
981s DEBUG (shell:822) <Server: adt-plucky-ppc64el-cctbx-20250313-110403-juju-7f2275-prod-proposed-migration-environment-20-6fe9cf99-60ca-4967-b7c1-5270bc9e095a>
981s Traceback (most recent call last):
981s   File "/usr/lib/python3/dist-packages/novaclient/shell.py", line 820, in main
981s     OpenStackComputeShell().main(argv)
981s   File "/usr/lib/python3/dist-packages/novaclient/shell.py", line 742, in main
981s     args.func(self.cs, args)
981s   File "/usr/lib/python3/dist-packages/novaclient/v2/shell.py", line 980, in do_boot
981s     _poll_for_status(cs.servers.get, server.id, 'building', ['active'])
981s   File "/usr/lib/python3/dist-packages/novaclient/v2/shell.py", line 1019, in _poll_for_status
981s     raise exceptions.ResourceInErrorState(obj)
981s novaclient.exceptions.ResourceInErrorState: <Server: adt-plucky-ppc64el-cctbx-20250313-110403-juju-7f2275-prod-proposed-migration-environment-20-6fe9cf99-60ca-4967-b7c1-5270bc9e095a>
981s ERROR (ResourceInErrorState): <Server: adt-plucky-ppc64el-cctbx-20250313-110403-juju-7f2275-prod-proposed-migration-environment-20-6fe9cf99-60ca-4967-b7c1-5270bc9e095a>
981s 
981s Error building server
983s autopkgtest [14:06:08]: testbed dpkg architecture: ppc64el
984s autopkgtest [14:06:09]: testbed apt version: 2.9.32ubuntu1
984s autopkgtest [14:06:09]: @@@@@@@@@@@@@@@@@@@@ test bed setup
984s autopkgtest [14:06:09]: testbed release detected to be: None
985s autopkgtest [14:06:10]: updating testbed package index (apt update)
985s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
986s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
986s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
986s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
986s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [2420 B]
986s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [46.1 kB]
986s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [11.5 kB]
986s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [378 kB]
986s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main ppc64el Packages [65.9 kB]
986s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el Packages [303 kB]
986s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse ppc64el Packages [3020 B]
986s Fetched 920 kB in 1s (1100 kB/s)
987s Reading package lists...
987s Reading package lists...
988s Building dependency tree...
988s Reading state information...
988s Calculating upgrade...
988s Calculating upgrade...
988s The following NEW packages will be installed:
988s   pnp.ids
988s The following packages will be upgraded:
988s   gir1.2-glib-2.0 htop hwdata libglib2.0-0t64 libglib2.0-data
988s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
988s Need to get 2297 kB of archives.
988s After this operation, 11.3 kB of additional disk space will be used.
988s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el gir1.2-glib-2.0 ppc64el 2.84.0-1 [184 kB]
989s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglib2.0-0t64 ppc64el 2.84.0-1 [1802 kB]
989s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglib2.0-data all 2.84.0-1 [53.0 kB]
989s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el htop ppc64el 3.4.0-2 [227 kB]
989s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el hwdata all 0.393-3 [1562 B]
989s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el pnp.ids all 0.393-3 [29.5 kB]
989s Fetched 2297 kB in 1s (3647 kB/s)
990s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 107190 files and directories currently installed.)
990s Preparing to unpack .../0-gir1.2-glib-2.0_2.84.0-1_ppc64el.deb ...
990s Unpacking gir1.2-glib-2.0:ppc64el (2.84.0-1) over (2.83.5-1) ...
990s Preparing to unpack .../1-libglib2.0-0t64_2.84.0-1_ppc64el.deb ...
990s Unpacking libglib2.0-0t64:ppc64el (2.84.0-1) over (2.83.5-1) ...
990s Preparing to unpack .../2-libglib2.0-data_2.84.0-1_all.deb ...
990s Unpacking libglib2.0-data (2.84.0-1) over (2.83.5-1) ...
990s Preparing to unpack .../3-htop_3.4.0-2_ppc64el.deb ...
990s Unpacking htop (3.4.0-2) over (3.4.0-1) ...
990s Preparing to unpack .../4-hwdata_0.393-3_all.deb ...
990s Unpacking hwdata (0.393-3) over (0.393-1) ...
990s Selecting previously unselected package pnp.ids.
990s Preparing to unpack .../5-pnp.ids_0.393-3_all.deb ...
990s Unpacking pnp.ids (0.393-3) ...
990s Setting up htop (3.4.0-2) ...
990s Setting up libglib2.0-0t64:ppc64el (2.84.0-1) ...
990s No schema files found: doing nothing.
990s Setting up libglib2.0-data (2.84.0-1) ...
990s Setting up gir1.2-glib-2.0:ppc64el (2.84.0-1) ...
990s Setting up pnp.ids (0.393-3) ...
990s Setting up hwdata (0.393-3) ...
990s Processing triggers for man-db (2.13.0-1) ...
991s Processing triggers for libc-bin (2.41-1ubuntu1) ...
991s autopkgtest [14:06:16]: upgrading testbed (apt dist-upgrade and autopurge)
991s Reading package lists...
991s Building dependency tree...
991s Reading state information...
991s Solving dependencies...
991s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
991s Reading package lists...
992s Building dependency tree...
992s Reading state information...
992s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
992s Starting 2 pkgProblemResolver with broken count: 0
992s Done
992s Entering ResolveByKeep
993s 
993s Calculating upgrade...
993s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
993s Reading package lists...
993s Building dependency tree...
993s Reading state information...
994s Starting pkgProblemResolver with broken count: 0
994s Starting 2 pkgProblemResolver with broken count: 0
994s Done
994s Solving dependencies...
994s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
996s autopkgtest [14:06:21]: testbed running kernel: Linux 6.14.0-7-generic #7-Ubuntu SMP Fri Feb 28 12:06:33 UTC 2025
997s autopkgtest [14:06:22]: @@@@@@@@@@@@@@@@@@@@ apt-source cctbx
1000s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/universe cctbx 2024.10+ds2+~3.22.1+ds1-4build2 (dsc) [4106 B]
1000s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe cctbx 2024.10+ds2+~3.22.1+ds1-4build2 (tar) [378 kB]
1000s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe cctbx 2024.10+ds2+~3.22.1+ds1-4build2 (tar) [23.9 MB]
1000s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe cctbx 2024.10+ds2+~3.22.1+ds1-4build2 (diff) [418 kB]
1001s gpgv: Signature made Tue Mar  4 14:45:06 2025 UTC
1001s gpgv:                using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
1001s gpgv: Can't check signature: No public key
1001s dpkg-source: warning: cannot verify inline signature for ./cctbx_2024.10+ds2+~3.22.1+ds1-4build2.dsc: no acceptable signature found
1003s autopkgtest [14:06:28]: testing package cctbx version 2024.10+ds2+~3.22.1+ds1-4build2
1004s autopkgtest [14:06:29]: build not needed
1009s autopkgtest [14:06:34]: test cctbx: preparing testbed
1010s Reading package lists...
1010s Building dependency tree...
1010s Reading state information...
1010s Starting pkgProblemResolver with broken count: 0
1010s Starting 2 pkgProblemResolver with broken count: 0
1010s Done
1010s The following NEW packages will be installed:
1010s   adwaita-icon-theme at-spi2-common blt cpp cpp-14
1010s   cpp-14-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu
1010s   dconf-gsettings-backend dconf-service fontconfig fontconfig-config
1010s   fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx
1010s   g++ g++-14 g++-14-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-14
1010s   gcc-14-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gtk-update-icon-cache
1010s   hicolor-icon-theme libaec0 libann-cctbx-dev libann-cctbx0 libantlr3c-3.4-0
1010s   libasan8 libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64
1010s   libavahi-client3 libavahi-common-data libavahi-common3 libblas3
1010s   libboost-numpy1.83.0 libboost-python-dev libboost-python1.83-dev
1010s   libboost-python1.83.0 libboost-thread1.83.0 libboost-timer1.83.0
1010s   libboost1.83-dev libcairo-gobject2 libcairo2 libcbf1t64 libcc1-0
1010s   libccp4-data libccp4-dev libccp4c0t64 libccp4f0t64 libcctbx-dev libcctbx0
1010s   libcolord2 libcups2t64 libdatrie1 libdconf1 libdeflate0
1010s   libdouble-conversion3 libegl-mesa0 libegl1 libepoxy0 libexpat1-dev
1010s   libfontconfig1 libgbm1 libgcc-14-dev libgdk-pixbuf-2.0-0
1010s   libgdk-pixbuf2.0-common libgfortran5 libgl1 libgl1-mesa-dri libglew2.2
1010s   libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3
1010s   libgtk-3-0t64 libgtk-3-common libharfbuzz0b libhdf5-310 libhdf5-hl-310
1010s   libice6 libimagequant0 libinput-bin libinput10 libisl23 libitm1 libjbig0
1010s   libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc
1010s   libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 liblzf1
1010s   libmd4c0 libmmdb2-0 libmpc3 libmtdev1t64 libnetcdf22 libnotify4 libopengl0
1010s   libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
1010s   libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libpython3-dev libpython3.13-dev
1010s   libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64
1010s   libqt5help5 libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64
1010s   libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libquadmath0
1010s   libraqm0 libsharpyuv0 libsm6 libssm2 libstdc++-14-dev libsz2 libtcl8.6
1010s   libthai-data libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 libvulkan1
1010s   libwacom-common libwacom9 libwayland-client0 libwayland-cursor0
1010s   libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3
1010s   libwxbase3.2-1t64 libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 libx11-xcb1
1010s   libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1
1010s   libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0
1010s   libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0
1010s   libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcomposite1 libxcursor1
1010s   libxdamage1 libxfixes3 libxft2 libxi6 libxinerama1 libxkbcommon-x11-0
1010s   libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxss1 libxtst6 libxxf86vm1
1010s   mesa-libgallium pymol-data python-matplotlib-data python3-all python3-brotli
1010s   python3-cctbx python3-contourpy python3-cycler python3-dateutil
1010s   python3-decorator python3-dev python3-flexcache python3-flexparser
1010s   python3-fonttools python3-fs python3-h5py python3-h5py-serial
1010s   python3-hdf5plugin python3-iniconfig python3-kiwisolver python3-legacy-cgi
1010s   python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-mrcfile
1010s   python3-natsort python3-numpy python3-numpy-dev python3-nxmx python3-opengl
1010s   python3-ordered-set python3-packaging python3-pil python3-pil.imagetk
1010s   python3-pint python3-platformdirs python3-pluggy python3-procrunner
1010s   python3-pycbf python3-pymol python3-pyqt5 python3-pyqt5.qtopengl
1010s   python3-pyqt5.sip python3-pytest python3-scipy python3-six python3-sympy
1010s   python3-tk python3-tqdm python3-ufolib2 python3-wxgtk4.0 python3.12-tk
1010s   python3.13-dev python3.13-tk sphinx-rtd-theme-common tk8.6-blt2.5
1010s   unicode-data x11-common zlib1g-dev
1010s 0 upgraded, 253 newly installed, 0 to remove and 0 not upgraded.
1010s Need to get 255 MB of archives.
1010s After this operation, 1258 MB of additional disk space will be used.
1010s Get:1 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-lato all 2.015-1 [2781 kB]
1011s Get:2 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy-dev ppc64el 1:2.2.3+ds-4 [154 kB]
1011s Get:3 http://ftpmaster.internal/ubuntu plucky/main ppc64el libblas3 ppc64el 3.12.1-2 [239 kB]
1011s Get:4 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgfortran5 ppc64el 15-20250222-0ubuntu1 [612 kB]
1011s Get:5 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblapack3 ppc64el 3.12.1-2 [2813 kB]
1011s Get:6 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-numpy ppc64el 1:2.2.3+ds-4 [4836 kB]
1011s Get:7 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgdk-pixbuf2.0-common all 2.42.12+dfsg-2 [8004 B]
1011s Get:8 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-3ubuntu2 [215 kB]
1011s Get:9 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
1011s Get:10 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdeflate0 ppc64el 1.23-1 [63.4 kB]
1011s Get:11 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu2 [35.9 kB]
1011s Get:12 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblerc4 ppc64el 4.0.0+ds-5ubuntu1 [298 kB]
1011s Get:13 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsharpyuv0 ppc64el 1.5.0-0.1 [22.3 kB]
1011s Get:14 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebp7 ppc64el 1.5.0-0.1 [315 kB]
1011s Get:15 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu4 [272 kB]
1011s Get:16 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgdk-pixbuf-2.0-0 ppc64el 2.42.12+dfsg-2 [191 kB]
1011s Get:17 http://ftpmaster.internal/ubuntu plucky/main ppc64el gtk-update-icon-cache ppc64el 4.17.5+ds-3ubuntu1 [55.4 kB]
1011s Get:18 http://ftpmaster.internal/ubuntu plucky/main ppc64el hicolor-icon-theme all 0.18-2 [13.3 kB]
1011s Get:19 http://ftpmaster.internal/ubuntu plucky/main ppc64el adwaita-icon-theme all 48~beta-3 [578 kB]
1011s Get:20 http://ftpmaster.internal/ubuntu plucky/main ppc64el at-spi2-common all 2.55.90-1 [9072 B]
1011s Get:21 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtcl8.6 ppc64el 8.6.16+dfsg-1 [1201 kB]
1011s Get:22 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
1012s Get:23 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
1012s Get:24 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig-config ppc64el 2.15.0-2ubuntu1 [37.5 kB]
1012s Get:25 http://ftpmaster.internal/ubuntu plucky/main ppc64el libfontconfig1 ppc64el 2.15.0-2ubuntu1 [188 kB]
1012s Get:26 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB]
1012s Get:27 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB]
1012s Get:28 http://ftpmaster.internal/ubuntu plucky/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB]
1012s Get:29 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B]
1012s Get:30 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtk8.6 ppc64el 8.6.16-1 [946 kB]
1012s Get:31 http://ftpmaster.internal/ubuntu plucky/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-8 [778 kB]
1012s Get:32 http://ftpmaster.internal/ubuntu plucky/main ppc64el blt ppc64el 2.5.3+dfsg-8 [4830 B]
1012s Get:33 http://ftpmaster.internal/ubuntu plucky/main ppc64el libisl23 ppc64el 0.27-1 [882 kB]
1012s Get:34 http://ftpmaster.internal/ubuntu plucky/main ppc64el libmpc3 ppc64el 1.3.1-1build2 [62.1 kB]
1012s Get:35 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14-powerpc64le-linux-gnu ppc64el 14.2.0-17ubuntu3 [10.5 MB]
1012s Get:36 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-14 ppc64el 14.2.0-17ubuntu3 [1036 B]
1012s Get:37 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [5566 B]
1012s Get:38 http://ftpmaster.internal/ubuntu plucky/main ppc64el cpp ppc64el 4:14.2.0-1ubuntu1 [22.4 kB]
1012s Get:39 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdconf1 ppc64el 0.40.0-5 [43.7 kB]
1012s Get:40 http://ftpmaster.internal/ubuntu plucky/main ppc64el dconf-service ppc64el 0.40.0-5 [30.8 kB]
1012s Get:41 http://ftpmaster.internal/ubuntu plucky/main ppc64el dconf-gsettings-backend ppc64el 0.40.0-5 [26.0 kB]
1012s Get:42 http://ftpmaster.internal/ubuntu plucky/main ppc64el fontconfig ppc64el 2.15.0-2ubuntu1 [192 kB]
1012s Get:43 http://ftpmaster.internal/ubuntu plucky/main ppc64el fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
1012s Get:44 http://ftpmaster.internal/ubuntu plucky/universe ppc64el fonts-lyx all 2.4.3-1 [171 kB]
1012s Get:45 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcc1-0 ppc64el 15-20250222-0ubuntu1 [48.7 kB]
1012s Get:46 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgomp1 ppc64el 15-20250222-0ubuntu1 [168 kB]
1012s Get:47 http://ftpmaster.internal/ubuntu plucky/main ppc64el libitm1 ppc64el 15-20250222-0ubuntu1 [32.2 kB]
1012s Get:48 http://ftpmaster.internal/ubuntu plucky/main ppc64el libasan8 ppc64el 15-20250222-0ubuntu1 [3009 kB]
1012s Get:49 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblsan0 ppc64el 15-20250222-0ubuntu1 [1376 kB]
1012s Get:50 http://ftpmaster.internal/ubuntu plucky/main ppc64el libtsan2 ppc64el 15-20250222-0ubuntu1 [2733 kB]
1013s Get:51 http://ftpmaster.internal/ubuntu plucky/main ppc64el libubsan1 ppc64el 15-20250222-0ubuntu1 [1234 kB]
1013s Get:52 http://ftpmaster.internal/ubuntu plucky/main ppc64el libquadmath0 ppc64el 15-20250222-0ubuntu1 [160 kB]
1013s Get:53 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgcc-14-dev ppc64el 14.2.0-17ubuntu3 [1619 kB]
1013s Get:54 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14-powerpc64le-linux-gnu ppc64el 14.2.0-17ubuntu3 [20.6 MB]
1014s Get:55 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-14 ppc64el 14.2.0-17ubuntu3 [536 kB]
1014s Get:56 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [1226 B]
1014s Get:57 http://ftpmaster.internal/ubuntu plucky/main ppc64el gcc ppc64el 4:14.2.0-1ubuntu1 [5012 B]
1014s Get:58 http://ftpmaster.internal/ubuntu plucky/main ppc64el libstdc++-14-dev ppc64el 14.2.0-17ubuntu3 [2678 kB]
1014s Get:59 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14-powerpc64le-linux-gnu ppc64el 14.2.0-17ubuntu3 [12.0 MB]
1014s Get:60 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-14 ppc64el 14.2.0-17ubuntu3 [21.8 kB]
1014s Get:61 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:14.2.0-1ubuntu1 [966 B]
1014s Get:62 http://ftpmaster.internal/ubuntu plucky/main ppc64el g++ ppc64el 4:14.2.0-1ubuntu1 [1088 B]
1014s Get:63 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libaec0 ppc64el 1.1.3-1 [30.1 kB]
1014s Get:64 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libann-cctbx0 ppc64el 1.1.2+doc-9build1 [37.1 kB]
1014s Get:65 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libann-cctbx-dev ppc64el 1.1.2+doc-9build1 [52.6 kB]
1014s Get:66 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libantlr3c-3.4-0 ppc64el 3.4+dfsg-4build2 [60.7 kB]
1015s Get:67 http://ftpmaster.internal/ubuntu plucky/main ppc64el libatk1.0-0t64 ppc64el 2.55.90-1 [59.9 kB]
1015s Get:68 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxi6 ppc64el 2:1.8.2-1 [37.9 kB]
1015s Get:69 http://ftpmaster.internal/ubuntu plucky/main ppc64el libatspi2.0-0t64 ppc64el 2.55.90-1 [101 kB]
1015s Get:70 http://ftpmaster.internal/ubuntu plucky/main ppc64el libatk-bridge2.0-0t64 ppc64el 2.55.90-1 [77.8 kB]
1015s Get:71 http://ftpmaster.internal/ubuntu plucky/main ppc64el libavahi-common-data ppc64el 0.8-16ubuntu1 [30.9 kB]
1015s Get:72 http://ftpmaster.internal/ubuntu plucky/main ppc64el libavahi-common3 ppc64el 0.8-16ubuntu1 [26.0 kB]
1015s Get:73 http://ftpmaster.internal/ubuntu plucky/main ppc64el libavahi-client3 ppc64el 0.8-16ubuntu1 [30.9 kB]
1015s Get:74 http://ftpmaster.internal/ubuntu plucky/main ppc64el libboost-python1.83.0 ppc64el 1.83.0-4.1ubuntu1 [328 kB]
1015s Get:75 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libboost-numpy1.83.0 ppc64el 1.83.0-4.1ubuntu1 [243 kB]
1015s Get:76 http://ftpmaster.internal/ubuntu plucky/main ppc64el libboost1.83-dev ppc64el 1.83.0-4.1ubuntu1 [10.7 MB]
1015s Get:77 http://ftpmaster.internal/ubuntu plucky/main ppc64el libexpat1-dev ppc64el 2.6.4-1 [149 kB]
1015s Get:78 http://ftpmaster.internal/ubuntu plucky/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg+really1.3.1-1ubuntu1 [902 kB]
1015s Get:79 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3.13-dev ppc64el 3.13.2-1 [5971 kB]
1015s Get:80 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpython3-dev ppc64el 3.13.2-2 [10.7 kB]
1015s Get:81 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-dev ppc64el 3.13.2-1 [508 kB]
1015s Get:82 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
1015s Get:83 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
1015s Get:84 http://ftpmaster.internal/ubuntu plucky/main ppc64el libjs-sphinxdoc all 8.1.3-4 [30.9 kB]
1015s Get:85 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dev ppc64el 3.13.2-2 [26.7 kB]
1015s Get:86 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libboost-python1.83-dev ppc64el 1.83.0-4.1ubuntu1 [346 kB]
1015s Get:87 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libboost-python-dev ppc64el 1.83.0.2ubuntu1 [4520 B]
1015s Get:88 http://ftpmaster.internal/ubuntu plucky/main ppc64el libboost-thread1.83.0 ppc64el 1.83.0-4.1ubuntu1 [281 kB]
1015s Get:89 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libboost-timer1.83.0 ppc64el 1.83.0-4.1ubuntu1 [242 kB]
1015s Get:90 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpixman-1-0 ppc64el 0.44.0-3 [334 kB]
1016s Get:91 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB]
1016s Get:92 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B]
1016s Get:93 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo2 ppc64el 1.18.2-2 [747 kB]
1016s Get:94 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcairo-gobject2 ppc64el 1.18.2-2 [127 kB]
1016s Get:95 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libsz2 ppc64el 1.1.3-1 [5566 B]
1016s Get:96 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-310 ppc64el 1.14.5+repack-3 [1523 kB]
1016s Get:97 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libcbf1t64 ppc64el 0.9.7+dfsg1-5build1 [415 kB]
1016s Get:98 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libccp4-data all 8.0.0-4 [65.2 kB]
1016s Get:99 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libccp4c0t64 ppc64el 8.0.0-4 [118 kB]
1016s Get:100 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libmmdb2-0 ppc64el 2.0.22-1 [441 kB]
1016s Get:101 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libccp4f0t64 ppc64el 8.0.0-4 [216 kB]
1016s Get:102 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libccp4-dev ppc64el 8.0.0-4 [42.4 kB]
1016s Get:103 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el libcctbx0 ppc64el 2024.10+ds2+~3.22.1+ds1-4build2 [2145 kB]
1016s Get:104 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el libcctbx-dev ppc64el 2024.10+ds2+~3.22.1+ds1-4build2 [1192 kB]
1016s Get:105 http://ftpmaster.internal/ubuntu plucky/main ppc64el liblcms2-2 ppc64el 2.16-2 [243 kB]
1017s Get:106 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcolord2 ppc64el 1.4.7-3 [162 kB]
1017s Get:107 http://ftpmaster.internal/ubuntu plucky/main ppc64el libcups2t64 ppc64el 2.4.11-0ubuntu2 [347 kB]
1017s Get:108 http://ftpmaster.internal/ubuntu plucky/main ppc64el libdatrie1 ppc64el 0.2.13-3build1 [22.7 kB]
1017s Get:109 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libdouble-conversion3 ppc64el 3.3.1-1 [46.3 kB]
1017s Get:110 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwayland-server0 ppc64el 1.23.1-3 [42.4 kB]
1017s Get:111 http://ftpmaster.internal/ubuntu plucky/main ppc64el libx11-xcb1 ppc64el 2:1.8.10-2 [8008 B]
1017s Get:112 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-dri3-0 ppc64el 1.17.0-2 [7842 B]
1017s Get:113 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-present0 ppc64el 1.17.0-2 [6276 B]
1017s Get:114 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-randr0 ppc64el 1.17.0-2 [19.1 kB]
1017s Get:115 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-sync1 ppc64el 1.17.0-2 [9804 B]
1017s Get:116 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-xfixes0 ppc64el 1.17.0-2 [10.7 kB]
1017s Get:117 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxshmfence1 ppc64el 1.3-1build5 [4964 B]
1017s Get:118 http://ftpmaster.internal/ubuntu plucky/main ppc64el mesa-libgallium ppc64el 25.0.1-2ubuntu1 [9547 kB]
1017s Get:119 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgbm1 ppc64el 25.0.1-2ubuntu1 [39.1 kB]
1017s Get:120 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwayland-client0 ppc64el 1.23.1-3 [31.7 kB]
1017s Get:121 http://ftpmaster.internal/ubuntu plucky/main ppc64el libegl-mesa0 ppc64el 25.0.1-2ubuntu1 [152 kB]
1017s Get:122 http://ftpmaster.internal/ubuntu plucky/main ppc64el libepoxy0 ppc64el 1.5.10-2 [234 kB]
1018s Get:123 http://ftpmaster.internal/ubuntu plucky/main ppc64el libvulkan1 ppc64el 1.4.304.0-1 [163 kB]
1018s Get:124 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgl1-mesa-dri ppc64el 25.0.1-2ubuntu1 [35.1 kB]
1018s Get:125 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglvnd0 ppc64el 1.7.0-1build1 [72.4 kB]
1018s Get:126 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-glx0 ppc64el 1.17.0-2 [26.3 kB]
1018s Get:127 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxxf86vm1 ppc64el 1:1.1.4-1build4 [11.1 kB]
1018s Get:128 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglx-mesa0 ppc64el 25.0.1-2ubuntu1 [175 kB]
1018s Get:129 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglx0 ppc64el 1.7.0-1build1 [42.7 kB]
1018s Get:130 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgl1 ppc64el 1.7.0-1build1 [107 kB]
1018s Get:131 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libglew2.2 ppc64el 2.2.0-4build1 [186 kB]
1018s Get:132 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB]
1018s Get:133 http://ftpmaster.internal/ubuntu plucky/main ppc64el libharfbuzz0b ppc64el 10.2.0-1 [598 kB]
1018s Get:134 http://ftpmaster.internal/ubuntu plucky/main ppc64el libthai-data all 0.1.29-2build1 [158 kB]
1018s Get:135 http://ftpmaster.internal/ubuntu plucky/main ppc64el libthai0 ppc64el 0.1.29-2build1 [21.8 kB]
1018s Get:136 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpango-1.0-0 ppc64el 1.56.1-1 [277 kB]
1018s Get:137 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpangoft2-1.0-0 ppc64el 1.56.1-1 [58.6 kB]
1018s Get:138 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpangocairo-1.0-0 ppc64el 1.56.1-1 [30.6 kB]
1018s Get:139 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwayland-cursor0 ppc64el 1.23.1-3 [12.0 kB]
1018s Get:140 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwayland-egl1 ppc64el 1.23.1-3 [6236 B]
1018s Get:141 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcomposite1 ppc64el 1:0.4.6-1 [6816 B]
1018s Get:142 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxfixes3 ppc64el 1:6.0.0-2build1 [11.8 kB]
1018s Get:143 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcursor1 ppc64el 1:1.2.3-1 [27.4 kB]
1018s Get:144 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxdamage1 ppc64el 1:1.1.6-1build1 [6550 B]
1018s Get:145 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxinerama1 ppc64el 2:1.1.4-3build1 [6908 B]
1018s Get:146 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxrandr2 ppc64el 2:1.5.4-1 [21.7 kB]
1018s Get:147 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgtk-3-common all 3.24.48-3ubuntu1 [1424 kB]
1018s Get:148 http://ftpmaster.internal/ubuntu plucky/main ppc64el libgtk-3-0t64 ppc64el 3.24.48-3ubuntu1 [3380 kB]
1018s Get:149 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libhdf5-hl-310 ppc64el 1.14.5+repack-3 [74.9 kB]
1018s Get:150 http://ftpmaster.internal/ubuntu plucky/main ppc64el libice6 ppc64el 2:1.1.1-1 [49.9 kB]
1018s Get:151 http://ftpmaster.internal/ubuntu plucky/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB]
1018s Get:152 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwacom-common all 2.14.0-1 [103 kB]
1018s Get:153 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwacom9 ppc64el 2.14.0-1 [32.5 kB]
1018s Get:154 http://ftpmaster.internal/ubuntu plucky/main ppc64el libinput-bin ppc64el 1.27.1-1 [24.1 kB]
1018s Get:155 http://ftpmaster.internal/ubuntu plucky/main ppc64el libmtdev1t64 ppc64el 1.1.7-1 [18.5 kB]
1018s Get:156 http://ftpmaster.internal/ubuntu plucky/main ppc64el libinput10 ppc64el 1.27.1-1 [167 kB]
1018s Get:157 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
1018s Get:158 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB]
1018s Get:159 http://ftpmaster.internal/ubuntu plucky/universe ppc64el liblzf1 ppc64el 3.6-4 [7920 B]
1018s Get:160 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libmd4c0 ppc64el 0.5.2-2 [54.5 kB]
1018s Get:161 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libnetcdf22 ppc64el 1:4.9.3-1 [639 kB]
1018s Get:162 http://ftpmaster.internal/ubuntu plucky/main ppc64el libnotify4 ppc64el 0.8.4-1 [28.6 kB]
1018s Get:163 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpcre2-16-0 ppc64el 10.45-1 [286 kB]
1018s Get:164 http://ftpmaster.internal/ubuntu plucky/main ppc64el libpcre2-32-0 ppc64el 10.45-1 [269 kB]
1018s Get:165 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB]
1018s Get:166 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5core5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [2188 kB]
1019s Get:167 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5dbus5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [242 kB]
1019s Get:168 http://ftpmaster.internal/ubuntu plucky/main ppc64el libegl1 ppc64el 1.7.0-1build1 [34.1 kB]
1019s Get:169 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5network5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [808 kB]
1019s Get:170 http://ftpmaster.internal/ubuntu plucky/main ppc64el libsm6 ppc64el 2:1.2.4-1 [18.4 kB]
1019s Get:171 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-icccm4 ppc64el 0.4.2-1 [11.4 kB]
1019s Get:172 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-util1 ppc64el 0.4.1-1 [11.2 kB]
1019s Get:173 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-image0 ppc64el 0.4.0-2build1 [12.4 kB]
1019s Get:174 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-keysyms1 ppc64el 0.4.1-1 [9172 B]
1019s Get:175 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-render-util0 ppc64el 0.3.10-1 [11.5 kB]
1019s Get:176 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-shape0 ppc64el 1.17.0-2 [6310 B]
1019s Get:177 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-xinerama0 ppc64el 1.17.0-2 [5524 B]
1019s Get:178 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-xinput0 ppc64el 1.17.0-2 [36.9 kB]
1019s Get:179 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxcb-xkb1 ppc64el 1.17.0-2 [37.6 kB]
1019s Get:180 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxkbcommon-x11-0 ppc64el 1.7.0-2 [15.3 kB]
1019s Get:181 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5gui5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [4130 kB]
1019s Get:182 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5widgets5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [2792 kB]
1019s Get:183 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5xml5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [136 kB]
1019s Get:184 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5designer5 ppc64el 5.15.15-6build1 [2915 kB]
1020s Get:185 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5sql5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [134 kB]
1020s Get:186 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5help5 ppc64el 5.15.15-6build1 [179 kB]
1020s Get:187 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5opengl5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [164 kB]
1020s Get:188 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5printsupport5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [222 kB]
1020s Get:189 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libqt5test5t64 ppc64el 5.15.15+dfsg-4ubuntu1 [156 kB]
1020s Get:190 http://ftpmaster.internal/ubuntu plucky/main ppc64el libraqm0 ppc64el 0.10.2-1 [19.2 kB]
1020s Get:191 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libssm2 ppc64el 1.4.0-2build1 [107 kB]
1020s Get:192 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpdemux2 ppc64el 1.5.0-0.1 [14.6 kB]
1020s Get:193 http://ftpmaster.internal/ubuntu plucky/main ppc64el libwebpmux3 ppc64el 1.5.0-0.1 [31.1 kB]
1020s Get:194 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libwxbase3.2-1t64 ppc64el 3.2.6+dfsg-2ubuntu1 [1019 kB]
1020s Get:195 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxtst6 ppc64el 2:1.2.5-1 [14.7 kB]
1020s Get:196 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libwxgtk3.2-1t64 ppc64el 3.2.6+dfsg-2ubuntu1 [5177 kB]
1020s Get:197 http://ftpmaster.internal/ubuntu plucky/universe ppc64el libwxgtk-gl3.2-1t64 ppc64el 3.2.6+dfsg-2ubuntu1 [55.3 kB]
1020s Get:198 http://ftpmaster.internal/ubuntu plucky/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1ubuntu2 [191 kB]
1020s Get:199 http://ftpmaster.internal/ubuntu plucky/universe ppc64el pymol-data all 3.0.0+dfsg-3build2 [1394 kB]
1020s Get:200 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python-matplotlib-data all 3.8.3-7build1 [2934 kB]
1021s Get:201 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-all ppc64el 3.13.2-2 [884 B]
1021s Get:202 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-brotli ppc64el 1.1.0-2build4 [422 kB]
1021s Get:203 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-legacy-cgi all 2.6.2-1 [16.6 kB]
1021s Get:204 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pycbf ppc64el 0.9.7+dfsg1-5build1 [172 kB]
1021s Get:205 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-h5py-serial ppc64el 3.13.0-1 [1191 kB]
1021s Get:206 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-h5py all 3.13.0-1 [7978 B]
1021s Get:207 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-hdf5plugin all 5.0.0-1 [23.1 kB]
1021s Get:208 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-dateutil all 2.9.0-3 [80.2 kB]
1021s Get:209 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopenjp2-7 ppc64el 2.5.0-2ubuntu3 [247 kB]
1021s Get:210 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pil ppc64el 11.1.0-5build1 [601 kB]
1021s Get:211 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.12-tk ppc64el 3.12.9-1 [116 kB]
1021s Get:212 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3.13-tk ppc64el 3.13.2-1 [107 kB]
1021s Get:213 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-tk ppc64el 3.13.1-1 [9772 B]
1021s Get:214 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pil.imagetk ppc64el 11.1.0-5build1 [10.3 kB]
1021s Get:215 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-contourpy ppc64el 1.3.1-1build1 [218 kB]
1021s Get:216 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-cycler all 0.12.1-1 [9716 B]
1021s Get:217 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-platformdirs all 4.3.6-1 [16.8 kB]
1021s Get:218 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fs all 2.4.16-7 [90.8 kB]
1021s Get:219 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-lxml ppc64el 5.3.1-1build1 [1393 kB]
1021s Get:220 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-lz4 ppc64el 4.4.0+dfsg-1build1 [28.1 kB]
1021s Get:221 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB]
1021s Get:222 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-scipy ppc64el 1.14.1-4ubuntu2 [19.4 MB]
1022s Get:223 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB]
1022s Get:224 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-sympy all 1.13.3-5 [4229 kB]
1023s Get:225 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB]
1023s Get:226 http://ftpmaster.internal/ubuntu plucky/universe ppc64el unicode-data all 15.1.0-1 [8878 kB]
1023s Get:227 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-fonttools ppc64el 4.55.3-2build1 [1521 kB]
1023s Get:228 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-kiwisolver ppc64el 1.4.7-3build1 [59.5 kB]
1023s Get:229 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-packaging all 24.2-1 [51.5 kB]
1023s Get:230 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-matplotlib ppc64el 3.8.3-7build1 [17.4 MB]
1023s Get:231 http://ftpmaster.internal/ubuntu plucky/main ppc64el sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB]
1023s Get:232 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-mrcfile all 1.5.4-2 [116 kB]
1023s Get:233 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-natsort all 8.0.2-2 [33.8 kB]
1023s Get:234 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-flexcache all 0.3-2 [13.4 kB]
1023s Get:235 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-flexparser all 0.4-1 [43.8 kB]
1023s Get:236 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-pint all 0.24.4-1 [203 kB]
1023s Get:237 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-nxmx all 0.0.4-1 [16.4 kB]
1023s Get:238 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-ordered-set all 4.1.0-1 [9778 B]
1023s Get:239 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-procrunner all 2.3.3-2 [12.0 kB]
1023s Get:240 http://ftpmaster.internal/ubuntu plucky/main ppc64el libopengl0 ppc64el 1.7.0-1build1 [35.5 kB]
1023s Get:241 http://ftpmaster.internal/ubuntu plucky/main ppc64el libglu1-mesa ppc64el 9.0.2-1.1build1 [276 kB]
1023s Get:242 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-opengl all 3.1.7+dfsg-1 [612 kB]
1023s Get:243 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyqt5.sip ppc64el 12.17.0-1build1 [80.9 kB]
1023s Get:244 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyqt5 ppc64el 5.15.11+dfsg-2 [2650 kB]
1023s Get:245 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pyqt5.qtopengl ppc64el 5.15.11+dfsg-2 [118 kB]
1023s Get:246 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pymol ppc64el 3.0.0+dfsg-3build2 [4230 kB]
1024s Get:247 http://ftpmaster.internal/ubuntu plucky/main ppc64el python3-six all 1.17.0-1 [13.2 kB]
1024s Get:248 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-tqdm all 4.67.1-2 [92.5 kB]
1024s Get:249 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-wxgtk4.0 ppc64el 4.2.2+dfsg-3build1 [7919 kB]
1024s Get:250 http://ftpmaster.internal/ubuntu plucky-proposed/universe ppc64el python3-cctbx ppc64el 2024.10+ds2+~3.22.1+ds1-4build2 [29.8 MB]
1025s Get:251 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B]
1025s Get:252 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pluggy all 1.5.0-1 [21.0 kB]
1025s Get:253 http://ftpmaster.internal/ubuntu plucky/universe ppc64el python3-pytest all 8.3.4-1 [252 kB]
1025s Fetched 255 MB in 14s (17.9 MB/s)
1025s Selecting previously unselected package fonts-lato.
1025s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 20%
(Reading database ... 25%
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(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
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(Reading database ... 107193 files and directories currently installed.)
1025s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ...
1025s Unpacking fonts-lato (2.015-1) ...
1026s Selecting previously unselected package python3-numpy-dev:ppc64el.
1026s Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.3+ds-4_ppc64el.deb ...
1026s Unpacking python3-numpy-dev:ppc64el (1:2.2.3+ds-4) ...
1026s Selecting previously unselected package libblas3:ppc64el.
1026s Preparing to unpack .../002-libblas3_3.12.1-2_ppc64el.deb ...
1026s Unpacking libblas3:ppc64el (3.12.1-2) ...
1026s Selecting previously unselected package libgfortran5:ppc64el.
1026s Preparing to unpack .../003-libgfortran5_15-20250222-0ubuntu1_ppc64el.deb ...
1026s Unpacking libgfortran5:ppc64el (15-20250222-0ubuntu1) ...
1026s Selecting previously unselected package liblapack3:ppc64el.
1026s Preparing to unpack .../004-liblapack3_3.12.1-2_ppc64el.deb ...
1026s Unpacking liblapack3:ppc64el (3.12.1-2) ...
1026s Selecting previously unselected package python3-numpy.
1026s Preparing to unpack .../005-python3-numpy_1%3a2.2.3+ds-4_ppc64el.deb ...
1026s Unpacking python3-numpy (1:2.2.3+ds-4) ...
1026s Selecting previously unselected package libgdk-pixbuf2.0-common.
1026s Preparing to unpack .../006-libgdk-pixbuf2.0-common_2.42.12+dfsg-2_all.deb ...
1026s Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ...
1026s Selecting previously unselected package libjpeg-turbo8:ppc64el.
1026s Preparing to unpack .../007-libjpeg-turbo8_2.1.5-3ubuntu2_ppc64el.deb ...
1026s Unpacking libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ...
1026s Selecting previously unselected package libjpeg8:ppc64el.
1026s Preparing to unpack .../008-libjpeg8_8c-2ubuntu11_ppc64el.deb ...
1026s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ...
1026s Selecting previously unselected package libdeflate0:ppc64el.
1026s Preparing to unpack .../009-libdeflate0_1.23-1_ppc64el.deb ...
1026s Unpacking libdeflate0:ppc64el (1.23-1) ...
1026s Selecting previously unselected package libjbig0:ppc64el.
1026s Preparing to unpack .../010-libjbig0_2.1-6.1ubuntu2_ppc64el.deb ...
1026s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu2) ...
1026s Selecting previously unselected package liblerc4:ppc64el.
1026s Preparing to unpack .../011-liblerc4_4.0.0+ds-5ubuntu1_ppc64el.deb ...
1026s Unpacking liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ...
1026s Selecting previously unselected package libsharpyuv0:ppc64el.
1026s Preparing to unpack .../012-libsharpyuv0_1.5.0-0.1_ppc64el.deb ...
1026s Unpacking libsharpyuv0:ppc64el (1.5.0-0.1) ...
1026s Selecting previously unselected package libwebp7:ppc64el.
1026s Preparing to unpack .../013-libwebp7_1.5.0-0.1_ppc64el.deb ...
1026s Unpacking libwebp7:ppc64el (1.5.0-0.1) ...
1026s Selecting previously unselected package libtiff6:ppc64el.
1026s Preparing to unpack .../014-libtiff6_4.5.1+git230720-4ubuntu4_ppc64el.deb ...
1026s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ...
1026s Selecting previously unselected package libgdk-pixbuf-2.0-0:ppc64el.
1026s Preparing to unpack .../015-libgdk-pixbuf-2.0-0_2.42.12+dfsg-2_ppc64el.deb ...
1026s Unpacking libgdk-pixbuf-2.0-0:ppc64el (2.42.12+dfsg-2) ...
1026s Selecting previously unselected package gtk-update-icon-cache.
1026s Preparing to unpack .../016-gtk-update-icon-cache_4.17.5+ds-3ubuntu1_ppc64el.deb ...
1026s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed.
1026s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed.
1026s Unpacking gtk-update-icon-cache (4.17.5+ds-3ubuntu1) ...
1026s Selecting previously unselected package hicolor-icon-theme.
1026s Preparing to unpack .../017-hicolor-icon-theme_0.18-2_all.deb ...
1026s Unpacking hicolor-icon-theme (0.18-2) ...
1026s Selecting previously unselected package adwaita-icon-theme.
1026s Preparing to unpack .../018-adwaita-icon-theme_48~beta-3_all.deb ...
1026s Unpacking adwaita-icon-theme (48~beta-3) ...
1026s Selecting previously unselected package at-spi2-common.
1026s Preparing to unpack .../019-at-spi2-common_2.55.90-1_all.deb ...
1026s Unpacking at-spi2-common (2.55.90-1) ...
1026s Selecting previously unselected package libtcl8.6:ppc64el.
1026s Preparing to unpack .../020-libtcl8.6_8.6.16+dfsg-1_ppc64el.deb ...
1026s Unpacking libtcl8.6:ppc64el (8.6.16+dfsg-1) ...
1027s Selecting previously unselected package fonts-dejavu-mono.
1027s Preparing to unpack .../021-fonts-dejavu-mono_2.37-8_all.deb ...
1027s Unpacking fonts-dejavu-mono (2.37-8) ...
1027s Selecting previously unselected package fonts-dejavu-core.
1027s Preparing to unpack .../022-fonts-dejavu-core_2.37-8_all.deb ...
1027s Unpacking fonts-dejavu-core (2.37-8) ...
1027s Selecting previously unselected package fontconfig-config.
1027s Preparing to unpack .../023-fontconfig-config_2.15.0-2ubuntu1_ppc64el.deb ...
1027s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
1027s Selecting previously unselected package libfontconfig1:ppc64el.
1027s Preparing to unpack .../024-libfontconfig1_2.15.0-2ubuntu1_ppc64el.deb ...
1027s Unpacking libfontconfig1:ppc64el (2.15.0-2ubuntu1) ...
1027s Selecting previously unselected package libxrender1:ppc64el.
1027s Preparing to unpack .../025-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ...
1027s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ...
1027s Selecting previously unselected package libxft2:ppc64el.
1027s Preparing to unpack .../026-libxft2_2.3.6-1build1_ppc64el.deb ...
1027s Unpacking libxft2:ppc64el (2.3.6-1build1) ...
1027s Selecting previously unselected package x11-common.
1027s Preparing to unpack .../027-x11-common_1%3a7.7+23ubuntu3_all.deb ...
1027s Unpacking x11-common (1:7.7+23ubuntu3) ...
1027s Selecting previously unselected package libxss1:ppc64el.
1027s Preparing to unpack .../028-libxss1_1%3a1.2.3-1build3_ppc64el.deb ...
1027s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ...
1027s Selecting previously unselected package libtk8.6:ppc64el.
1027s Preparing to unpack .../029-libtk8.6_8.6.16-1_ppc64el.deb ...
1027s Unpacking libtk8.6:ppc64el (8.6.16-1) ...
1027s Selecting previously unselected package tk8.6-blt2.5.
1027s Preparing to unpack .../030-tk8.6-blt2.5_2.5.3+dfsg-8_ppc64el.deb ...
1027s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ...
1027s Selecting previously unselected package blt.
1027s Preparing to unpack .../031-blt_2.5.3+dfsg-8_ppc64el.deb ...
1027s Unpacking blt (2.5.3+dfsg-8) ...
1027s Selecting previously unselected package libisl23:ppc64el.
1027s Preparing to unpack .../032-libisl23_0.27-1_ppc64el.deb ...
1027s Unpacking libisl23:ppc64el (0.27-1) ...
1027s Selecting previously unselected package libmpc3:ppc64el.
1027s Preparing to unpack .../033-libmpc3_1.3.1-1build2_ppc64el.deb ...
1027s Unpacking libmpc3:ppc64el (1.3.1-1build2) ...
1027s Selecting previously unselected package cpp-14-powerpc64le-linux-gnu.
1027s Preparing to unpack .../034-cpp-14-powerpc64le-linux-gnu_14.2.0-17ubuntu3_ppc64el.deb ...
1027s Unpacking cpp-14-powerpc64le-linux-gnu (14.2.0-17ubuntu3) ...
1027s Selecting previously unselected package cpp-14.
1027s Preparing to unpack .../035-cpp-14_14.2.0-17ubuntu3_ppc64el.deb ...
1027s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
1027s Selecting previously unselected package cpp-powerpc64le-linux-gnu.
1027s Preparing to unpack .../036-cpp-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
1027s Unpacking cpp-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
1027s Selecting previously unselected package cpp.
1027s Preparing to unpack .../037-cpp_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
1027s Unpacking cpp (4:14.2.0-1ubuntu1) ...
1027s Selecting previously unselected package libdconf1:ppc64el.
1027s Preparing to unpack .../038-libdconf1_0.40.0-5_ppc64el.deb ...
1027s Unpacking libdconf1:ppc64el (0.40.0-5) ...
1027s Selecting previously unselected package dconf-service.
1027s Preparing to unpack .../039-dconf-service_0.40.0-5_ppc64el.deb ...
1027s Unpacking dconf-service (0.40.0-5) ...
1027s Selecting previously unselected package dconf-gsettings-backend:ppc64el.
1027s Preparing to unpack .../040-dconf-gsettings-backend_0.40.0-5_ppc64el.deb ...
1027s Unpacking dconf-gsettings-backend:ppc64el (0.40.0-5) ...
1027s Selecting previously unselected package fontconfig.
1027s Preparing to unpack .../041-fontconfig_2.15.0-2ubuntu1_ppc64el.deb ...
1027s Unpacking fontconfig (2.15.0-2ubuntu1) ...
1027s Selecting previously unselected package fonts-font-awesome.
1027s Preparing to unpack .../042-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
1027s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
1027s Selecting previously unselected package fonts-lyx.
1027s Preparing to unpack .../043-fonts-lyx_2.4.3-1_all.deb ...
1027s Unpacking fonts-lyx (2.4.3-1) ...
1027s Selecting previously unselected package libcc1-0:ppc64el.
1027s Preparing to unpack .../044-libcc1-0_15-20250222-0ubuntu1_ppc64el.deb ...
1027s Unpacking libcc1-0:ppc64el (15-20250222-0ubuntu1) ...
1027s Selecting previously unselected package libgomp1:ppc64el.
1027s Preparing to unpack .../045-libgomp1_15-20250222-0ubuntu1_ppc64el.deb ...
1027s Unpacking libgomp1:ppc64el (15-20250222-0ubuntu1) ...
1027s Selecting previously unselected package libitm1:ppc64el.
1027s Preparing to unpack .../046-libitm1_15-20250222-0ubuntu1_ppc64el.deb ...
1027s Unpacking libitm1:ppc64el (15-20250222-0ubuntu1) ...
1028s Selecting previously unselected package libasan8:ppc64el.
1028s Preparing to unpack .../047-libasan8_15-20250222-0ubuntu1_ppc64el.deb ...
1028s Unpacking libasan8:ppc64el (15-20250222-0ubuntu1) ...
1028s Selecting previously unselected package liblsan0:ppc64el.
1028s Preparing to unpack .../048-liblsan0_15-20250222-0ubuntu1_ppc64el.deb ...
1028s Unpacking liblsan0:ppc64el (15-20250222-0ubuntu1) ...
1028s Selecting previously unselected package libtsan2:ppc64el.
1028s Preparing to unpack .../049-libtsan2_15-20250222-0ubuntu1_ppc64el.deb ...
1028s Unpacking libtsan2:ppc64el (15-20250222-0ubuntu1) ...
1028s Selecting previously unselected package libubsan1:ppc64el.
1028s Preparing to unpack .../050-libubsan1_15-20250222-0ubuntu1_ppc64el.deb ...
1028s Unpacking libubsan1:ppc64el (15-20250222-0ubuntu1) ...
1028s Selecting previously unselected package libquadmath0:ppc64el.
1028s Preparing to unpack .../051-libquadmath0_15-20250222-0ubuntu1_ppc64el.deb ...
1028s Unpacking libquadmath0:ppc64el (15-20250222-0ubuntu1) ...
1028s Selecting previously unselected package libgcc-14-dev:ppc64el.
1028s Preparing to unpack .../052-libgcc-14-dev_14.2.0-17ubuntu3_ppc64el.deb ...
1028s Unpacking libgcc-14-dev:ppc64el (14.2.0-17ubuntu3) ...
1028s Selecting previously unselected package gcc-14-powerpc64le-linux-gnu.
1028s Preparing to unpack .../053-gcc-14-powerpc64le-linux-gnu_14.2.0-17ubuntu3_ppc64el.deb ...
1028s Unpacking gcc-14-powerpc64le-linux-gnu (14.2.0-17ubuntu3) ...
1028s Selecting previously unselected package gcc-14.
1028s Preparing to unpack .../054-gcc-14_14.2.0-17ubuntu3_ppc64el.deb ...
1028s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
1028s Selecting previously unselected package gcc-powerpc64le-linux-gnu.
1028s Preparing to unpack .../055-gcc-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
1028s Unpacking gcc-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
1028s Selecting previously unselected package gcc.
1028s Preparing to unpack .../056-gcc_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
1028s Unpacking gcc (4:14.2.0-1ubuntu1) ...
1028s Selecting previously unselected package libstdc++-14-dev:ppc64el.
1028s Preparing to unpack .../057-libstdc++-14-dev_14.2.0-17ubuntu3_ppc64el.deb ...
1028s Unpacking libstdc++-14-dev:ppc64el (14.2.0-17ubuntu3) ...
1028s Selecting previously unselected package g++-14-powerpc64le-linux-gnu.
1028s Preparing to unpack .../058-g++-14-powerpc64le-linux-gnu_14.2.0-17ubuntu3_ppc64el.deb ...
1028s Unpacking g++-14-powerpc64le-linux-gnu (14.2.0-17ubuntu3) ...
1029s Selecting previously unselected package g++-14.
1029s Preparing to unpack .../059-g++-14_14.2.0-17ubuntu3_ppc64el.deb ...
1029s Unpacking g++-14 (14.2.0-17ubuntu3) ...
1029s Selecting previously unselected package g++-powerpc64le-linux-gnu.
1029s Preparing to unpack .../060-g++-powerpc64le-linux-gnu_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
1029s Unpacking g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
1029s Selecting previously unselected package g++.
1029s Preparing to unpack .../061-g++_4%3a14.2.0-1ubuntu1_ppc64el.deb ...
1029s Unpacking g++ (4:14.2.0-1ubuntu1) ...
1029s Selecting previously unselected package libaec0:ppc64el.
1029s Preparing to unpack .../062-libaec0_1.1.3-1_ppc64el.deb ...
1029s Unpacking libaec0:ppc64el (1.1.3-1) ...
1029s Selecting previously unselected package libann-cctbx0.
1029s Preparing to unpack .../063-libann-cctbx0_1.1.2+doc-9build1_ppc64el.deb ...
1029s Unpacking libann-cctbx0 (1.1.2+doc-9build1) ...
1029s Selecting previously unselected package libann-cctbx-dev.
1029s Preparing to unpack .../064-libann-cctbx-dev_1.1.2+doc-9build1_ppc64el.deb ...
1029s Unpacking libann-cctbx-dev (1.1.2+doc-9build1) ...
1029s Selecting previously unselected package libantlr3c-3.4-0:ppc64el.
1029s Preparing to unpack .../065-libantlr3c-3.4-0_3.4+dfsg-4build2_ppc64el.deb ...
1029s Unpacking libantlr3c-3.4-0:ppc64el (3.4+dfsg-4build2) ...
1029s Selecting previously unselected package libatk1.0-0t64:ppc64el.
1029s Preparing to unpack .../066-libatk1.0-0t64_2.55.90-1_ppc64el.deb ...
1029s Unpacking libatk1.0-0t64:ppc64el (2.55.90-1) ...
1029s Selecting previously unselected package libxi6:ppc64el.
1029s Preparing to unpack .../067-libxi6_2%3a1.8.2-1_ppc64el.deb ...
1029s Unpacking libxi6:ppc64el (2:1.8.2-1) ...
1029s Selecting previously unselected package libatspi2.0-0t64:ppc64el.
1029s Preparing to unpack .../068-libatspi2.0-0t64_2.55.90-1_ppc64el.deb ...
1029s Unpacking libatspi2.0-0t64:ppc64el (2.55.90-1) ...
1029s Selecting previously unselected package libatk-bridge2.0-0t64:ppc64el.
1029s Preparing to unpack .../069-libatk-bridge2.0-0t64_2.55.90-1_ppc64el.deb ...
1029s Unpacking libatk-bridge2.0-0t64:ppc64el (2.55.90-1) ...
1029s Selecting previously unselected package libavahi-common-data:ppc64el.
1029s Preparing to unpack .../070-libavahi-common-data_0.8-16ubuntu1_ppc64el.deb ...
1029s Unpacking libavahi-common-data:ppc64el (0.8-16ubuntu1) ...
1029s Selecting previously unselected package libavahi-common3:ppc64el.
1029s Preparing to unpack .../071-libavahi-common3_0.8-16ubuntu1_ppc64el.deb ...
1029s Unpacking libavahi-common3:ppc64el (0.8-16ubuntu1) ...
1029s Selecting previously unselected package libavahi-client3:ppc64el.
1029s Preparing to unpack .../072-libavahi-client3_0.8-16ubuntu1_ppc64el.deb ...
1029s Unpacking libavahi-client3:ppc64el (0.8-16ubuntu1) ...
1029s Selecting previously unselected package libboost-python1.83.0.
1029s Preparing to unpack .../073-libboost-python1.83.0_1.83.0-4.1ubuntu1_ppc64el.deb ...
1029s Unpacking libboost-python1.83.0 (1.83.0-4.1ubuntu1) ...
1029s Selecting previously unselected package libboost-numpy1.83.0.
1029s Preparing to unpack .../074-libboost-numpy1.83.0_1.83.0-4.1ubuntu1_ppc64el.deb ...
1029s Unpacking libboost-numpy1.83.0 (1.83.0-4.1ubuntu1) ...
1029s Selecting previously unselected package libboost1.83-dev:ppc64el.
1029s Preparing to unpack .../075-libboost1.83-dev_1.83.0-4.1ubuntu1_ppc64el.deb ...
1029s Unpacking libboost1.83-dev:ppc64el (1.83.0-4.1ubuntu1) ...
1031s Selecting previously unselected package libexpat1-dev:ppc64el.
1031s Preparing to unpack .../076-libexpat1-dev_2.6.4-1_ppc64el.deb ...
1031s Unpacking libexpat1-dev:ppc64el (2.6.4-1) ...
1031s Selecting previously unselected package zlib1g-dev:ppc64el.
1031s Preparing to unpack .../077-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_ppc64el.deb ...
1031s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
1031s Selecting previously unselected package libpython3.13-dev:ppc64el.
1031s Preparing to unpack .../078-libpython3.13-dev_3.13.2-1_ppc64el.deb ...
1031s Unpacking libpython3.13-dev:ppc64el (3.13.2-1) ...
1031s Selecting previously unselected package libpython3-dev:ppc64el.
1031s Preparing to unpack .../079-libpython3-dev_3.13.2-2_ppc64el.deb ...
1031s Unpacking libpython3-dev:ppc64el (3.13.2-2) ...
1031s Selecting previously unselected package python3.13-dev.
1031s Preparing to unpack .../080-python3.13-dev_3.13.2-1_ppc64el.deb ...
1031s Unpacking python3.13-dev (3.13.2-1) ...
1031s Selecting previously unselected package libjs-jquery.
1031s Preparing to unpack .../081-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
1031s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
1031s Selecting previously unselected package libjs-underscore.
1031s Preparing to unpack .../082-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ...
1031s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
1031s Selecting previously unselected package libjs-sphinxdoc.
1031s Preparing to unpack .../083-libjs-sphinxdoc_8.1.3-4_all.deb ...
1031s Unpacking libjs-sphinxdoc (8.1.3-4) ...
1031s Selecting previously unselected package python3-dev.
1031s Preparing to unpack .../084-python3-dev_3.13.2-2_ppc64el.deb ...
1031s Unpacking python3-dev (3.13.2-2) ...
1031s Selecting previously unselected package libboost-python1.83-dev.
1031s Preparing to unpack .../085-libboost-python1.83-dev_1.83.0-4.1ubuntu1_ppc64el.deb ...
1031s Unpacking libboost-python1.83-dev (1.83.0-4.1ubuntu1) ...
1032s Selecting previously unselected package libboost-python-dev.
1032s Preparing to unpack .../086-libboost-python-dev_1.83.0.2ubuntu1_ppc64el.deb ...
1032s Unpacking libboost-python-dev (1.83.0.2ubuntu1) ...
1032s Selecting previously unselected package libboost-thread1.83.0:ppc64el.
1032s Preparing to unpack .../087-libboost-thread1.83.0_1.83.0-4.1ubuntu1_ppc64el.deb ...
1032s Unpacking libboost-thread1.83.0:ppc64el (1.83.0-4.1ubuntu1) ...
1032s Selecting previously unselected package libboost-timer1.83.0:ppc64el.
1032s Preparing to unpack .../088-libboost-timer1.83.0_1.83.0-4.1ubuntu1_ppc64el.deb ...
1032s Unpacking libboost-timer1.83.0:ppc64el (1.83.0-4.1ubuntu1) ...
1032s Selecting previously unselected package libpixman-1-0:ppc64el.
1032s Preparing to unpack .../089-libpixman-1-0_0.44.0-3_ppc64el.deb ...
1032s Unpacking libpixman-1-0:ppc64el (0.44.0-3) ...
1032s Selecting previously unselected package libxcb-render0:ppc64el.
1032s Preparing to unpack .../090-libxcb-render0_1.17.0-2_ppc64el.deb ...
1032s Unpacking libxcb-render0:ppc64el (1.17.0-2) ...
1032s Selecting previously unselected package libxcb-shm0:ppc64el.
1032s Preparing to unpack .../091-libxcb-shm0_1.17.0-2_ppc64el.deb ...
1032s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ...
1032s Selecting previously unselected package libcairo2:ppc64el.
1032s Preparing to unpack .../092-libcairo2_1.18.2-2_ppc64el.deb ...
1032s Unpacking libcairo2:ppc64el (1.18.2-2) ...
1032s Selecting previously unselected package libcairo-gobject2:ppc64el.
1032s Preparing to unpack .../093-libcairo-gobject2_1.18.2-2_ppc64el.deb ...
1032s Unpacking libcairo-gobject2:ppc64el (1.18.2-2) ...
1032s Selecting previously unselected package libsz2:ppc64el.
1032s Preparing to unpack .../094-libsz2_1.1.3-1_ppc64el.deb ...
1032s Unpacking libsz2:ppc64el (1.1.3-1) ...
1032s Selecting previously unselected package libhdf5-310:ppc64el.
1032s Preparing to unpack .../095-libhdf5-310_1.14.5+repack-3_ppc64el.deb ...
1032s Unpacking libhdf5-310:ppc64el (1.14.5+repack-3) ...
1032s Selecting previously unselected package libcbf1t64:ppc64el.
1032s Preparing to unpack .../096-libcbf1t64_0.9.7+dfsg1-5build1_ppc64el.deb ...
1032s Unpacking libcbf1t64:ppc64el (0.9.7+dfsg1-5build1) ...
1032s Selecting previously unselected package libccp4-data.
1032s Preparing to unpack .../097-libccp4-data_8.0.0-4_all.deb ...
1032s Unpacking libccp4-data (8.0.0-4) ...
1032s Selecting previously unselected package libccp4c0t64:ppc64el.
1032s Preparing to unpack .../098-libccp4c0t64_8.0.0-4_ppc64el.deb ...
1032s Unpacking libccp4c0t64:ppc64el (8.0.0-4) ...
1032s Selecting previously unselected package libmmdb2-0:ppc64el.
1032s Preparing to unpack .../099-libmmdb2-0_2.0.22-1_ppc64el.deb ...
1032s Unpacking libmmdb2-0:ppc64el (2.0.22-1) ...
1032s Selecting previously unselected package libccp4f0t64:ppc64el.
1032s Preparing to unpack .../100-libccp4f0t64_8.0.0-4_ppc64el.deb ...
1032s Unpacking libccp4f0t64:ppc64el (8.0.0-4) ...
1032s Selecting previously unselected package libccp4-dev:ppc64el.
1032s Preparing to unpack .../101-libccp4-dev_8.0.0-4_ppc64el.deb ...
1032s Unpacking libccp4-dev:ppc64el (8.0.0-4) ...
1032s Selecting previously unselected package libcctbx0.
1032s Preparing to unpack .../102-libcctbx0_2024.10+ds2+~3.22.1+ds1-4build2_ppc64el.deb ...
1032s Unpacking libcctbx0 (2024.10+ds2+~3.22.1+ds1-4build2) ...
1032s Selecting previously unselected package libcctbx-dev.
1032s Preparing to unpack .../103-libcctbx-dev_2024.10+ds2+~3.22.1+ds1-4build2_ppc64el.deb ...
1032s Unpacking libcctbx-dev (2024.10+ds2+~3.22.1+ds1-4build2) ...
1032s Selecting previously unselected package liblcms2-2:ppc64el.
1032s Preparing to unpack .../104-liblcms2-2_2.16-2_ppc64el.deb ...
1032s Unpacking liblcms2-2:ppc64el (2.16-2) ...
1032s Selecting previously unselected package libcolord2:ppc64el.
1032s Preparing to unpack .../105-libcolord2_1.4.7-3_ppc64el.deb ...
1032s Unpacking libcolord2:ppc64el (1.4.7-3) ...
1032s Selecting previously unselected package libcups2t64:ppc64el.
1032s Preparing to unpack .../106-libcups2t64_2.4.11-0ubuntu2_ppc64el.deb ...
1032s Unpacking libcups2t64:ppc64el (2.4.11-0ubuntu2) ...
1032s Selecting previously unselected package libdatrie1:ppc64el.
1032s Preparing to unpack .../107-libdatrie1_0.2.13-3build1_ppc64el.deb ...
1032s Unpacking libdatrie1:ppc64el (0.2.13-3build1) ...
1032s Selecting previously unselected package libdouble-conversion3:ppc64el.
1032s Preparing to unpack .../108-libdouble-conversion3_3.3.1-1_ppc64el.deb ...
1032s Unpacking libdouble-conversion3:ppc64el (3.3.1-1) ...
1032s Selecting previously unselected package libwayland-server0:ppc64el.
1032s Preparing to unpack .../109-libwayland-server0_1.23.1-3_ppc64el.deb ...
1032s Unpacking libwayland-server0:ppc64el (1.23.1-3) ...
1032s Selecting previously unselected package libx11-xcb1:ppc64el.
1032s Preparing to unpack .../110-libx11-xcb1_2%3a1.8.10-2_ppc64el.deb ...
1032s Unpacking libx11-xcb1:ppc64el (2:1.8.10-2) ...
1032s Selecting previously unselected package libxcb-dri3-0:ppc64el.
1032s Preparing to unpack .../111-libxcb-dri3-0_1.17.0-2_ppc64el.deb ...
1032s Unpacking libxcb-dri3-0:ppc64el (1.17.0-2) ...
1032s Selecting previously unselected package libxcb-present0:ppc64el.
1032s Preparing to unpack .../112-libxcb-present0_1.17.0-2_ppc64el.deb ...
1032s Unpacking libxcb-present0:ppc64el (1.17.0-2) ...
1032s Selecting previously unselected package libxcb-randr0:ppc64el.
1032s Preparing to unpack .../113-libxcb-randr0_1.17.0-2_ppc64el.deb ...
1032s Unpacking libxcb-randr0:ppc64el (1.17.0-2) ...
1032s Selecting previously unselected package libxcb-sync1:ppc64el.
1032s Preparing to unpack .../114-libxcb-sync1_1.17.0-2_ppc64el.deb ...
1032s Unpacking libxcb-sync1:ppc64el (1.17.0-2) ...
1032s Selecting previously unselected package libxcb-xfixes0:ppc64el.
1032s Preparing to unpack .../115-libxcb-xfixes0_1.17.0-2_ppc64el.deb ...
1032s Unpacking libxcb-xfixes0:ppc64el (1.17.0-2) ...
1032s Selecting previously unselected package libxshmfence1:ppc64el.
1032s Preparing to unpack .../116-libxshmfence1_1.3-1build5_ppc64el.deb ...
1032s Unpacking libxshmfence1:ppc64el (1.3-1build5) ...
1032s Selecting previously unselected package mesa-libgallium:ppc64el.
1033s Preparing to unpack .../117-mesa-libgallium_25.0.1-2ubuntu1_ppc64el.deb ...
1033s Unpacking mesa-libgallium:ppc64el (25.0.1-2ubuntu1) ...
1033s Selecting previously unselected package libgbm1:ppc64el.
1033s Preparing to unpack .../118-libgbm1_25.0.1-2ubuntu1_ppc64el.deb ...
1033s Unpacking libgbm1:ppc64el (25.0.1-2ubuntu1) ...
1033s Selecting previously unselected package libwayland-client0:ppc64el.
1033s Preparing to unpack .../119-libwayland-client0_1.23.1-3_ppc64el.deb ...
1033s Unpacking libwayland-client0:ppc64el (1.23.1-3) ...
1033s Selecting previously unselected package libegl-mesa0:ppc64el.
1033s Preparing to unpack .../120-libegl-mesa0_25.0.1-2ubuntu1_ppc64el.deb ...
1033s Unpacking libegl-mesa0:ppc64el (25.0.1-2ubuntu1) ...
1033s Selecting previously unselected package libepoxy0:ppc64el.
1033s Preparing to unpack .../121-libepoxy0_1.5.10-2_ppc64el.deb ...
1033s Unpacking libepoxy0:ppc64el (1.5.10-2) ...
1033s Selecting previously unselected package libvulkan1:ppc64el.
1033s Preparing to unpack .../122-libvulkan1_1.4.304.0-1_ppc64el.deb ...
1033s Unpacking libvulkan1:ppc64el (1.4.304.0-1) ...
1033s Selecting previously unselected package libgl1-mesa-dri:ppc64el.
1033s Preparing to unpack .../123-libgl1-mesa-dri_25.0.1-2ubuntu1_ppc64el.deb ...
1033s Unpacking libgl1-mesa-dri:ppc64el (25.0.1-2ubuntu1) ...
1033s Selecting previously unselected package libglvnd0:ppc64el.
1033s Preparing to unpack .../124-libglvnd0_1.7.0-1build1_ppc64el.deb ...
1033s Unpacking libglvnd0:ppc64el (1.7.0-1build1) ...
1033s Selecting previously unselected package libxcb-glx0:ppc64el.
1033s Preparing to unpack .../125-libxcb-glx0_1.17.0-2_ppc64el.deb ...
1033s Unpacking libxcb-glx0:ppc64el (1.17.0-2) ...
1033s Selecting previously unselected package libxxf86vm1:ppc64el.
1033s Preparing to unpack .../126-libxxf86vm1_1%3a1.1.4-1build4_ppc64el.deb ...
1033s Unpacking libxxf86vm1:ppc64el (1:1.1.4-1build4) ...
1033s Selecting previously unselected package libglx-mesa0:ppc64el.
1033s Preparing to unpack .../127-libglx-mesa0_25.0.1-2ubuntu1_ppc64el.deb ...
1033s Unpacking libglx-mesa0:ppc64el (25.0.1-2ubuntu1) ...
1033s Selecting previously unselected package libglx0:ppc64el.
1033s Preparing to unpack .../128-libglx0_1.7.0-1build1_ppc64el.deb ...
1033s Unpacking libglx0:ppc64el (1.7.0-1build1) ...
1033s Selecting previously unselected package libgl1:ppc64el.
1033s Preparing to unpack .../129-libgl1_1.7.0-1build1_ppc64el.deb ...
1033s Unpacking libgl1:ppc64el (1.7.0-1build1) ...
1033s Selecting previously unselected package libglew2.2:ppc64el.
1033s Preparing to unpack .../130-libglew2.2_2.2.0-4build1_ppc64el.deb ...
1033s Unpacking libglew2.2:ppc64el (2.2.0-4build1) ...
1033s Selecting previously unselected package libgraphite2-3:ppc64el.
1033s Preparing to unpack .../131-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ...
1033s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ...
1033s Selecting previously unselected package libharfbuzz0b:ppc64el.
1033s Preparing to unpack .../132-libharfbuzz0b_10.2.0-1_ppc64el.deb ...
1033s Unpacking libharfbuzz0b:ppc64el (10.2.0-1) ...
1033s Selecting previously unselected package libthai-data.
1033s Preparing to unpack .../133-libthai-data_0.1.29-2build1_all.deb ...
1033s Unpacking libthai-data (0.1.29-2build1) ...
1033s Selecting previously unselected package libthai0:ppc64el.
1033s Preparing to unpack .../134-libthai0_0.1.29-2build1_ppc64el.deb ...
1033s Unpacking libthai0:ppc64el (0.1.29-2build1) ...
1033s Selecting previously unselected package libpango-1.0-0:ppc64el.
1033s Preparing to unpack .../135-libpango-1.0-0_1.56.1-1_ppc64el.deb ...
1033s Unpacking libpango-1.0-0:ppc64el (1.56.1-1) ...
1033s Selecting previously unselected package libpangoft2-1.0-0:ppc64el.
1033s Preparing to unpack .../136-libpangoft2-1.0-0_1.56.1-1_ppc64el.deb ...
1033s Unpacking libpangoft2-1.0-0:ppc64el (1.56.1-1) ...
1033s Selecting previously unselected package libpangocairo-1.0-0:ppc64el.
1033s Preparing to unpack .../137-libpangocairo-1.0-0_1.56.1-1_ppc64el.deb ...
1033s Unpacking libpangocairo-1.0-0:ppc64el (1.56.1-1) ...
1033s Selecting previously unselected package libwayland-cursor0:ppc64el.
1033s Preparing to unpack .../138-libwayland-cursor0_1.23.1-3_ppc64el.deb ...
1033s Unpacking libwayland-cursor0:ppc64el (1.23.1-3) ...
1033s Selecting previously unselected package libwayland-egl1:ppc64el.
1033s Preparing to unpack .../139-libwayland-egl1_1.23.1-3_ppc64el.deb ...
1033s Unpacking libwayland-egl1:ppc64el (1.23.1-3) ...
1033s Selecting previously unselected package libxcomposite1:ppc64el.
1033s Preparing to unpack .../140-libxcomposite1_1%3a0.4.6-1_ppc64el.deb ...
1033s Unpacking libxcomposite1:ppc64el (1:0.4.6-1) ...
1033s Selecting previously unselected package libxfixes3:ppc64el.
1033s Preparing to unpack .../141-libxfixes3_1%3a6.0.0-2build1_ppc64el.deb ...
1033s Unpacking libxfixes3:ppc64el (1:6.0.0-2build1) ...
1033s Selecting previously unselected package libxcursor1:ppc64el.
1033s Preparing to unpack .../142-libxcursor1_1%3a1.2.3-1_ppc64el.deb ...
1033s Unpacking libxcursor1:ppc64el (1:1.2.3-1) ...
1033s Selecting previously unselected package libxdamage1:ppc64el.
1033s Preparing to unpack .../143-libxdamage1_1%3a1.1.6-1build1_ppc64el.deb ...
1033s Unpacking libxdamage1:ppc64el (1:1.1.6-1build1) ...
1033s Selecting previously unselected package libxinerama1:ppc64el.
1033s Preparing to unpack .../144-libxinerama1_2%3a1.1.4-3build1_ppc64el.deb ...
1033s Unpacking libxinerama1:ppc64el (2:1.1.4-3build1) ...
1033s Selecting previously unselected package libxrandr2:ppc64el.
1033s Preparing to unpack .../145-libxrandr2_2%3a1.5.4-1_ppc64el.deb ...
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1033s Selecting previously unselected package libgtk-3-common.
1033s Preparing to unpack .../146-libgtk-3-common_3.24.48-3ubuntu1_all.deb ...
1033s Unpacking libgtk-3-common (3.24.48-3ubuntu1) ...
1033s Selecting previously unselected package libgtk-3-0t64:ppc64el.
1033s Preparing to unpack .../147-libgtk-3-0t64_3.24.48-3ubuntu1_ppc64el.deb ...
1033s Unpacking libgtk-3-0t64:ppc64el (3.24.48-3ubuntu1) ...
1033s Selecting previously unselected package libhdf5-hl-310:ppc64el.
1034s Preparing to unpack .../148-libhdf5-hl-310_1.14.5+repack-3_ppc64el.deb ...
1034s Unpacking libhdf5-hl-310:ppc64el (1.14.5+repack-3) ...
1034s Selecting previously unselected package libice6:ppc64el.
1034s Preparing to unpack .../149-libice6_2%3a1.1.1-1_ppc64el.deb ...
1034s Unpacking libice6:ppc64el (2:1.1.1-1) ...
1034s Selecting previously unselected package libimagequant0:ppc64el.
1034s Preparing to unpack .../150-libimagequant0_2.18.0-1build1_ppc64el.deb ...
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1034s Selecting previously unselected package libwacom-common.
1034s Preparing to unpack .../151-libwacom-common_2.14.0-1_all.deb ...
1034s Unpacking libwacom-common (2.14.0-1) ...
1034s Selecting previously unselected package libwacom9:ppc64el.
1034s Preparing to unpack .../152-libwacom9_2.14.0-1_ppc64el.deb ...
1034s Unpacking libwacom9:ppc64el (2.14.0-1) ...
1034s Selecting previously unselected package libinput-bin.
1034s Preparing to unpack .../153-libinput-bin_1.27.1-1_ppc64el.deb ...
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1034s Selecting previously unselected package libmtdev1t64:ppc64el.
1034s Preparing to unpack .../154-libmtdev1t64_1.1.7-1_ppc64el.deb ...
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1034s Selecting previously unselected package libinput10:ppc64el.
1034s Preparing to unpack .../155-libinput10_1.27.1-1_ppc64el.deb ...
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1034s Selecting previously unselected package libjs-jquery-ui.
1034s Preparing to unpack .../156-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
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1034s Selecting previously unselected package liblbfgsb0:ppc64el.
1034s Preparing to unpack .../157-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ...
1034s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ...
1034s Selecting previously unselected package liblzf1:ppc64el.
1034s Preparing to unpack .../158-liblzf1_3.6-4_ppc64el.deb ...
1034s Unpacking liblzf1:ppc64el (3.6-4) ...
1034s Selecting previously unselected package libmd4c0:ppc64el.
1034s Preparing to unpack .../159-libmd4c0_0.5.2-2_ppc64el.deb ...
1034s Unpacking libmd4c0:ppc64el (0.5.2-2) ...
1034s Selecting previously unselected package libnetcdf22:ppc64el.
1034s Preparing to unpack .../160-libnetcdf22_1%3a4.9.3-1_ppc64el.deb ...
1034s Unpacking libnetcdf22:ppc64el (1:4.9.3-1) ...
1034s Selecting previously unselected package libnotify4:ppc64el.
1034s Preparing to unpack .../161-libnotify4_0.8.4-1_ppc64el.deb ...
1034s Unpacking libnotify4:ppc64el (0.8.4-1) ...
1034s Selecting previously unselected package libpcre2-16-0:ppc64el.
1034s Preparing to unpack .../162-libpcre2-16-0_10.45-1_ppc64el.deb ...
1034s Unpacking libpcre2-16-0:ppc64el (10.45-1) ...
1034s Selecting previously unselected package libpcre2-32-0:ppc64el.
1034s Preparing to unpack .../163-libpcre2-32-0_10.45-1_ppc64el.deb ...
1034s Unpacking libpcre2-32-0:ppc64el (10.45-1) ...
1034s Selecting previously unselected package libqhull-r8.0:ppc64el.
1034s Preparing to unpack .../164-libqhull-r8.0_2020.2-6build1_ppc64el.deb ...
1034s Unpacking libqhull-r8.0:ppc64el (2020.2-6build1) ...
1034s Selecting previously unselected package libqt5core5t64:ppc64el.
1034s Preparing to unpack .../165-libqt5core5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ...
1034s Unpacking libqt5core5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ...
1034s Selecting previously unselected package libqt5dbus5t64:ppc64el.
1034s Preparing to unpack .../166-libqt5dbus5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ...
1034s Unpacking libqt5dbus5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ...
1034s Selecting previously unselected package libegl1:ppc64el.
1034s Preparing to unpack .../167-libegl1_1.7.0-1build1_ppc64el.deb ...
1034s Unpacking libegl1:ppc64el (1.7.0-1build1) ...
1034s Selecting previously unselected package libqt5network5t64:ppc64el.
1034s Preparing to unpack .../168-libqt5network5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ...
1034s Unpacking libqt5network5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ...
1034s Selecting previously unselected package libsm6:ppc64el.
1034s Preparing to unpack .../169-libsm6_2%3a1.2.4-1_ppc64el.deb ...
1034s Unpacking libsm6:ppc64el (2:1.2.4-1) ...
1034s Selecting previously unselected package libxcb-icccm4:ppc64el.
1034s Preparing to unpack .../170-libxcb-icccm4_0.4.2-1_ppc64el.deb ...
1034s Unpacking libxcb-icccm4:ppc64el (0.4.2-1) ...
1034s Selecting previously unselected package libxcb-util1:ppc64el.
1034s Preparing to unpack .../171-libxcb-util1_0.4.1-1_ppc64el.deb ...
1034s Unpacking libxcb-util1:ppc64el (0.4.1-1) ...
1034s Selecting previously unselected package libxcb-image0:ppc64el.
1034s Preparing to unpack .../172-libxcb-image0_0.4.0-2build1_ppc64el.deb ...
1034s Unpacking libxcb-image0:ppc64el (0.4.0-2build1) ...
1034s Selecting previously unselected package libxcb-keysyms1:ppc64el.
1034s Preparing to unpack .../173-libxcb-keysyms1_0.4.1-1_ppc64el.deb ...
1034s Unpacking libxcb-keysyms1:ppc64el (0.4.1-1) ...
1034s Selecting previously unselected package libxcb-render-util0:ppc64el.
1034s Preparing to unpack .../174-libxcb-render-util0_0.3.10-1_ppc64el.deb ...
1034s Unpacking libxcb-render-util0:ppc64el (0.3.10-1) ...
1034s Selecting previously unselected package libxcb-shape0:ppc64el.
1034s Preparing to unpack .../175-libxcb-shape0_1.17.0-2_ppc64el.deb ...
1034s Unpacking libxcb-shape0:ppc64el (1.17.0-2) ...
1034s Selecting previously unselected package libxcb-xinerama0:ppc64el.
1034s Preparing to unpack .../176-libxcb-xinerama0_1.17.0-2_ppc64el.deb ...
1034s Unpacking libxcb-xinerama0:ppc64el (1.17.0-2) ...
1034s Selecting previously unselected package libxcb-xinput0:ppc64el.
1034s Preparing to unpack .../177-libxcb-xinput0_1.17.0-2_ppc64el.deb ...
1034s Unpacking libxcb-xinput0:ppc64el (1.17.0-2) ...
1034s Selecting previously unselected package libxcb-xkb1:ppc64el.
1034s Preparing to unpack .../178-libxcb-xkb1_1.17.0-2_ppc64el.deb ...
1034s Unpacking libxcb-xkb1:ppc64el (1.17.0-2) ...
1034s Selecting previously unselected package libxkbcommon-x11-0:ppc64el.
1034s Preparing to unpack .../179-libxkbcommon-x11-0_1.7.0-2_ppc64el.deb ...
1034s Unpacking libxkbcommon-x11-0:ppc64el (1.7.0-2) ...
1034s Selecting previously unselected package libqt5gui5t64:ppc64el.
1034s Preparing to unpack .../180-libqt5gui5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ...
1034s Unpacking libqt5gui5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ...
1035s Selecting previously unselected package libqt5widgets5t64:ppc64el.
1035s Preparing to unpack .../181-libqt5widgets5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ...
1035s Unpacking libqt5widgets5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ...
1035s Selecting previously unselected package libqt5xml5t64:ppc64el.
1035s Preparing to unpack .../182-libqt5xml5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ...
1035s Unpacking libqt5xml5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ...
1035s Selecting previously unselected package libqt5designer5:ppc64el.
1035s Preparing to unpack .../183-libqt5designer5_5.15.15-6build1_ppc64el.deb ...
1035s Unpacking libqt5designer5:ppc64el (5.15.15-6build1) ...
1035s Selecting previously unselected package libqt5sql5t64:ppc64el.
1035s Preparing to unpack .../184-libqt5sql5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ...
1035s Unpacking libqt5sql5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ...
1035s Selecting previously unselected package libqt5help5:ppc64el.
1035s Preparing to unpack .../185-libqt5help5_5.15.15-6build1_ppc64el.deb ...
1035s Unpacking libqt5help5:ppc64el (5.15.15-6build1) ...
1035s Selecting previously unselected package libqt5opengl5t64:ppc64el.
1035s Preparing to unpack .../186-libqt5opengl5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ...
1035s Unpacking libqt5opengl5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ...
1035s Selecting previously unselected package libqt5printsupport5t64:ppc64el.
1035s Preparing to unpack .../187-libqt5printsupport5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ...
1035s Unpacking libqt5printsupport5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ...
1035s Selecting previously unselected package libqt5test5t64:ppc64el.
1035s Preparing to unpack .../188-libqt5test5t64_5.15.15+dfsg-4ubuntu1_ppc64el.deb ...
1035s Unpacking libqt5test5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ...
1035s Selecting previously unselected package libraqm0:ppc64el.
1035s Preparing to unpack .../189-libraqm0_0.10.2-1_ppc64el.deb ...
1035s Unpacking libraqm0:ppc64el (0.10.2-1) ...
1035s Selecting previously unselected package libssm2:ppc64el.
1035s Preparing to unpack .../190-libssm2_1.4.0-2build1_ppc64el.deb ...
1035s Unpacking libssm2:ppc64el (1.4.0-2build1) ...
1035s Selecting previously unselected package libwebpdemux2:ppc64el.
1035s Preparing to unpack .../191-libwebpdemux2_1.5.0-0.1_ppc64el.deb ...
1035s Unpacking libwebpdemux2:ppc64el (1.5.0-0.1) ...
1035s Selecting previously unselected package libwebpmux3:ppc64el.
1035s Preparing to unpack .../192-libwebpmux3_1.5.0-0.1_ppc64el.deb ...
1035s Unpacking libwebpmux3:ppc64el (1.5.0-0.1) ...
1035s Selecting previously unselected package libwxbase3.2-1t64:ppc64el.
1035s Preparing to unpack .../193-libwxbase3.2-1t64_3.2.6+dfsg-2ubuntu1_ppc64el.deb ...
1035s Unpacking libwxbase3.2-1t64:ppc64el (3.2.6+dfsg-2ubuntu1) ...
1035s Selecting previously unselected package libxtst6:ppc64el.
1035s Preparing to unpack .../194-libxtst6_2%3a1.2.5-1_ppc64el.deb ...
1035s Unpacking libxtst6:ppc64el (2:1.2.5-1) ...
1035s Selecting previously unselected package libwxgtk3.2-1t64:ppc64el.
1035s Preparing to unpack .../195-libwxgtk3.2-1t64_3.2.6+dfsg-2ubuntu1_ppc64el.deb ...
1035s Unpacking libwxgtk3.2-1t64:ppc64el (3.2.6+dfsg-2ubuntu1) ...
1035s Selecting previously unselected package libwxgtk-gl3.2-1t64:ppc64el.
1035s Preparing to unpack .../196-libwxgtk-gl3.2-1t64_3.2.6+dfsg-2ubuntu1_ppc64el.deb ...
1035s Unpacking libwxgtk-gl3.2-1t64:ppc64el (3.2.6+dfsg-2ubuntu1) ...
1035s Selecting previously unselected package libxslt1.1:ppc64el.
1035s Preparing to unpack .../197-libxslt1.1_1.1.39-0exp1ubuntu2_ppc64el.deb ...
1035s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1ubuntu2) ...
1035s Selecting previously unselected package pymol-data.
1035s Preparing to unpack .../198-pymol-data_3.0.0+dfsg-3build2_all.deb ...
1035s Unpacking pymol-data (3.0.0+dfsg-3build2) ...
1035s Selecting previously unselected package python-matplotlib-data.
1035s Preparing to unpack .../199-python-matplotlib-data_3.8.3-7build1_all.deb ...
1035s Unpacking python-matplotlib-data (3.8.3-7build1) ...
1035s Selecting previously unselected package python3-all.
1035s Preparing to unpack .../200-python3-all_3.13.2-2_ppc64el.deb ...
1035s Unpacking python3-all (3.13.2-2) ...
1035s Selecting previously unselected package python3-brotli.
1035s Preparing to unpack .../201-python3-brotli_1.1.0-2build4_ppc64el.deb ...
1035s Unpacking python3-brotli (1.1.0-2build4) ...
1035s Selecting previously unselected package python3-legacy-cgi.
1035s Preparing to unpack .../202-python3-legacy-cgi_2.6.2-1_all.deb ...
1035s Unpacking python3-legacy-cgi (2.6.2-1) ...
1035s Selecting previously unselected package python3-pycbf.
1035s Preparing to unpack .../203-python3-pycbf_0.9.7+dfsg1-5build1_ppc64el.deb ...
1035s Unpacking python3-pycbf (0.9.7+dfsg1-5build1) ...
1035s Selecting previously unselected package python3-h5py-serial.
1035s Preparing to unpack .../204-python3-h5py-serial_3.13.0-1_ppc64el.deb ...
1035s Unpacking python3-h5py-serial (3.13.0-1) ...
1035s Selecting previously unselected package python3-h5py.
1035s Preparing to unpack .../205-python3-h5py_3.13.0-1_all.deb ...
1035s Unpacking python3-h5py (3.13.0-1) ...
1035s Selecting previously unselected package python3-hdf5plugin.
1035s Preparing to unpack .../206-python3-hdf5plugin_5.0.0-1_all.deb ...
1035s Unpacking python3-hdf5plugin (5.0.0-1) ...
1036s Selecting previously unselected package python3-dateutil.
1036s Preparing to unpack .../207-python3-dateutil_2.9.0-3_all.deb ...
1036s Unpacking python3-dateutil (2.9.0-3) ...
1036s Selecting previously unselected package libopenjp2-7:ppc64el.
1036s Preparing to unpack .../208-libopenjp2-7_2.5.0-2ubuntu3_ppc64el.deb ...
1036s Unpacking libopenjp2-7:ppc64el (2.5.0-2ubuntu3) ...
1036s Selecting previously unselected package python3-pil:ppc64el.
1036s Preparing to unpack .../209-python3-pil_11.1.0-5build1_ppc64el.deb ...
1036s Unpacking python3-pil:ppc64el (11.1.0-5build1) ...
1036s Selecting previously unselected package python3.12-tk.
1036s Preparing to unpack .../210-python3.12-tk_3.12.9-1_ppc64el.deb ...
1036s Unpacking python3.12-tk (3.12.9-1) ...
1036s Selecting previously unselected package python3.13-tk.
1036s Preparing to unpack .../211-python3.13-tk_3.13.2-1_ppc64el.deb ...
1036s Unpacking python3.13-tk (3.13.2-1) ...
1036s Selecting previously unselected package python3-tk:ppc64el.
1036s Preparing to unpack .../212-python3-tk_3.13.1-1_ppc64el.deb ...
1036s Unpacking python3-tk:ppc64el (3.13.1-1) ...
1036s Selecting previously unselected package python3-pil.imagetk:ppc64el.
1036s Preparing to unpack .../213-python3-pil.imagetk_11.1.0-5build1_ppc64el.deb ...
1036s Unpacking python3-pil.imagetk:ppc64el (11.1.0-5build1) ...
1036s Selecting previously unselected package python3-contourpy.
1036s Preparing to unpack .../214-python3-contourpy_1.3.1-1build1_ppc64el.deb ...
1036s Unpacking python3-contourpy (1.3.1-1build1) ...
1036s Selecting previously unselected package python3-cycler.
1036s Preparing to unpack .../215-python3-cycler_0.12.1-1_all.deb ...
1036s Unpacking python3-cycler (0.12.1-1) ...
1036s Selecting previously unselected package python3-platformdirs.
1036s Preparing to unpack .../216-python3-platformdirs_4.3.6-1_all.deb ...
1036s Unpacking python3-platformdirs (4.3.6-1) ...
1036s Selecting previously unselected package python3-fs.
1036s Preparing to unpack .../217-python3-fs_2.4.16-7_all.deb ...
1036s Unpacking python3-fs (2.4.16-7) ...
1036s Selecting previously unselected package python3-lxml:ppc64el.
1036s Preparing to unpack .../218-python3-lxml_5.3.1-1build1_ppc64el.deb ...
1036s Unpacking python3-lxml:ppc64el (5.3.1-1build1) ...
1036s Selecting previously unselected package python3-lz4.
1036s Preparing to unpack .../219-python3-lz4_4.4.0+dfsg-1build1_ppc64el.deb ...
1036s Unpacking python3-lz4 (4.4.0+dfsg-1build1) ...
1036s Selecting previously unselected package python3-decorator.
1036s Preparing to unpack .../220-python3-decorator_5.1.1-5_all.deb ...
1036s Unpacking python3-decorator (5.1.1-5) ...
1036s Selecting previously unselected package python3-scipy.
1036s Preparing to unpack .../221-python3-scipy_1.14.1-4ubuntu2_ppc64el.deb ...
1036s Unpacking python3-scipy (1.14.1-4ubuntu2) ...
1036s Selecting previously unselected package python3-mpmath.
1036s Preparing to unpack .../222-python3-mpmath_1.3.0-1_all.deb ...
1036s Unpacking python3-mpmath (1.3.0-1) ...
1036s Selecting previously unselected package python3-sympy.
1036s Preparing to unpack .../223-python3-sympy_1.13.3-5_all.deb ...
1036s Unpacking python3-sympy (1.13.3-5) ...
1037s Selecting previously unselected package python3-ufolib2.
1037s Preparing to unpack .../224-python3-ufolib2_0.17.0+dfsg1-1_all.deb ...
1037s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ...
1037s Selecting previously unselected package unicode-data.
1037s Preparing to unpack .../225-unicode-data_15.1.0-1_all.deb ...
1037s Unpacking unicode-data (15.1.0-1) ...
1037s Selecting previously unselected package python3-fonttools.
1037s Preparing to unpack .../226-python3-fonttools_4.55.3-2build1_ppc64el.deb ...
1037s Unpacking python3-fonttools (4.55.3-2build1) ...
1037s Selecting previously unselected package python3-kiwisolver.
1037s Preparing to unpack .../227-python3-kiwisolver_1.4.7-3build1_ppc64el.deb ...
1037s Unpacking python3-kiwisolver (1.4.7-3build1) ...
1037s Selecting previously unselected package python3-packaging.
1037s Preparing to unpack .../228-python3-packaging_24.2-1_all.deb ...
1037s Unpacking python3-packaging (24.2-1) ...
1037s Selecting previously unselected package python3-matplotlib.
1037s Preparing to unpack .../229-python3-matplotlib_3.8.3-7build1_ppc64el.deb ...
1037s Unpacking python3-matplotlib (3.8.3-7build1) ...
1038s Selecting previously unselected package sphinx-rtd-theme-common.
1038s Preparing to unpack .../230-sphinx-rtd-theme-common_3.0.2+dfsg-2_all.deb ...
1038s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-2) ...
1038s Selecting previously unselected package python3-mrcfile.
1038s Preparing to unpack .../231-python3-mrcfile_1.5.4-2_all.deb ...
1038s Unpacking python3-mrcfile (1.5.4-2) ...
1038s Selecting previously unselected package python3-natsort.
1038s Preparing to unpack .../232-python3-natsort_8.0.2-2_all.deb ...
1038s Unpacking python3-natsort (8.0.2-2) ...
1038s Selecting previously unselected package python3-flexcache.
1038s Preparing to unpack .../233-python3-flexcache_0.3-2_all.deb ...
1038s Unpacking python3-flexcache (0.3-2) ...
1038s Selecting previously unselected package python3-flexparser.
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1038s Unpacking python3-flexparser (0.4-1) ...
1038s Selecting previously unselected package python3-pint.
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1038s Unpacking python3-pint (0.24.4-1) ...
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1038s Unpacking python3-nxmx (0.0.4-1) ...
1038s Selecting previously unselected package python3-ordered-set.
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1038s Unpacking python3-ordered-set (4.1.0-1) ...
1038s Selecting previously unselected package python3-procrunner.
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1038s Unpacking python3-procrunner (2.3.3-2) ...
1038s Selecting previously unselected package libopengl0:ppc64el.
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1038s Selecting previously unselected package libglu1-mesa:ppc64el.
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1038s Selecting previously unselected package python3-opengl.
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1038s Unpacking python3-opengl (3.1.7+dfsg-1) ...
1038s Selecting previously unselected package python3-pyqt5.sip.
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1038s Unpacking python3-pyqt5.sip (12.17.0-1build1) ...
1038s Selecting previously unselected package python3-pyqt5.
1038s Preparing to unpack .../243-python3-pyqt5_5.15.11+dfsg-2_ppc64el.deb ...
1038s Unpacking python3-pyqt5 (5.15.11+dfsg-2) ...
1038s Selecting previously unselected package python3-pyqt5.qtopengl.
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1038s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-2) ...
1038s Selecting previously unselected package python3-pymol.
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1039s Selecting previously unselected package python3-tqdm.
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1039s Selecting previously unselected package python3-wxgtk4.0.
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1039s Unpacking python3-wxgtk4.0 (4.2.2+dfsg-3build1) ...
1039s Selecting previously unselected package python3-cctbx.
1039s Preparing to unpack .../249-python3-cctbx_2024.10+ds2+~3.22.1+ds1-4build2_ppc64el.deb ...
1039s Unpacking python3-cctbx (2024.10+ds2+~3.22.1+ds1-4build2) ...
1040s Selecting previously unselected package python3-iniconfig.
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1040s Unpacking python3-iniconfig (1.1.1-2) ...
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1040s Selecting previously unselected package python3-pytest.
1040s Preparing to unpack .../252-python3-pytest_8.3.4-1_all.deb ...
1040s Unpacking python3-pytest (8.3.4-1) ...
1040s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ...
1040s Setting up libboost-python1.83.0 (1.83.0-4.1ubuntu1) ...
1040s Setting up libxcb-dri3-0:ppc64el (1.17.0-2) ...
1040s Setting up liblcms2-2:ppc64el (2.16-2) ...
1040s Setting up python3-iniconfig (1.1.1-2) ...
1041s Setting up libpixman-1-0:ppc64el (0.44.0-3) ...
1041s Setting up libsharpyuv0:ppc64el (1.5.0-0.1) ...
1041s Setting up libwayland-server0:ppc64el (1.23.1-3) ...
1041s Setting up libx11-xcb1:ppc64el (2:1.8.10-2) ...
1041s Setting up libdouble-conversion3:ppc64el (3.3.1-1) ...
1041s Setting up fonts-lato (2.015-1) ...
1041s Setting up libxdamage1:ppc64el (1:1.1.6-1build1) ...
1041s Setting up libxcb-xfixes0:ppc64el (1.17.0-2) ...
1041s Setting up liblerc4:ppc64el (4.0.0+ds-5ubuntu1) ...
1041s Setting up libantlr3c-3.4-0:ppc64el (3.4+dfsg-4build2) ...
1041s Setting up hicolor-icon-theme (0.18-2) ...
1041s Setting up libxi6:ppc64el (2:1.8.2-1) ...
1041s Setting up libxcb-xinput0:ppc64el (1.17.0-2) ...
1041s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ...
1041s Setting up libdatrie1:ppc64el (0.2.13-3build1) ...
1041s Setting up libmmdb2-0:ppc64el (2.0.22-1) ...
1041s Setting up libboost-timer1.83.0:ppc64el (1.83.0-4.1ubuntu1) ...
1041s Setting up python3-lz4 (4.4.0+dfsg-1build1) ...
1041s Setting up libxcb-render0:ppc64el (1.17.0-2) ...
1041s Setting up libglvnd0:ppc64el (1.7.0-1build1) ...
1041s Setting up fonts-lyx (2.4.3-1) ...
1041s Setting up libxcb-glx0:ppc64el (1.17.0-2) ...
1041s Setting up python3-tqdm (4.67.1-2) ...
1041s Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ...
1041s Setting up libxcb-keysyms1:ppc64el (0.4.1-1) ...
1041s Setting up libxcb-shape0:ppc64el (1.17.0-2) ...
1041s Setting up x11-common (1:7.7+23ubuntu3) ...
1041s Setting up libdeflate0:ppc64el (1.23-1) ...
1041s Setting up libboost-thread1.83.0:ppc64el (1.83.0-4.1ubuntu1) ...
1041s Setting up libqhull-r8.0:ppc64el (2020.2-6build1) ...
1041s Setting up libxcb-render-util0:ppc64el (0.3.10-1) ...
1041s Setting up python3-all (3.13.2-2) ...
1041s Setting up python3-ordered-set (4.1.0-1) ...
1042s Setting up libxcb-shm0:ppc64el (1.17.0-2) ...
1042s Setting up libxcb-icccm4:ppc64el (0.4.2-1) ...
1042s Setting up libccp4-data (8.0.0-4) ...
1042s Setting up libgomp1:ppc64el (15-20250222-0ubuntu1) ...
1042s Setting up libjbig0:ppc64el (2.1-6.1ubuntu2) ...
1042s Setting up libpcre2-16-0:ppc64el (10.45-1) ...
1042s Setting up libaec0:ppc64el (1.1.3-1) ...
1042s Setting up libcolord2:ppc64el (1.4.7-3) ...
1042s Setting up python3-platformdirs (4.3.6-1) ...
1042s Setting up libopengl0:ppc64el (1.7.0-1build1) ...
1042s Setting up python3-natsort (8.0.2-2) ...
1042s Setting up libxcb-util1:ppc64el (0.4.1-1) ...
1042s Setting up libxxf86vm1:ppc64el (1:1.1.4-1build4) ...
1042s Setting up libxcb-xkb1:ppc64el (1.17.0-2) ...
1042s Setting up libxcb-image0:ppc64el (0.4.0-2build1) ...
1042s Setting up python3-fs (2.4.16-7) ...
1042s Setting up libxcb-present0:ppc64el (1.17.0-2) ...
1042s Setting up libdconf1:ppc64el (0.40.0-5) ...
1042s Setting up unicode-data (15.1.0-1) ...
1042s Setting up python3-six (1.17.0-1) ...
1042s Setting up libqt5core5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ...
1042s Setting up python3-decorator (5.1.1-5) ...
1042s Setting up libboost-numpy1.83.0 (1.83.0-4.1ubuntu1) ...
1042s Setting up libpcre2-32-0:ppc64el (10.45-1) ...
1042s Setting up libblas3:ppc64el (3.12.1-2) ...
1042s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
1042s Setting up python3-packaging (24.2-1) ...
1042s Setting up libxcb-xinerama0:ppc64el (1.17.0-2) ...
1042s Setting up python3-flexparser (0.4-1) ...
1043s Setting up libexpat1-dev:ppc64el (2.6.4-1) ...
1043s Setting up libann-cctbx0 (1.1.2+doc-9build1) ...
1043s Setting up libepoxy0:ppc64el (1.5.10-2) ...
1043s Setting up libxfixes3:ppc64el (1:6.0.0-2build1) ...
1043s Setting up libxcb-sync1:ppc64el (1.17.0-2) ...
1043s Setting up python3-brotli (1.1.0-2build4) ...
1043s Setting up libavahi-common-data:ppc64el (0.8-16ubuntu1) ...
1043s Setting up libatspi2.0-0t64:ppc64el (2.55.90-1) ...
1043s Setting up liblzf1:ppc64el (3.6-4) ...
1043s Setting up libquadmath0:ppc64el (15-20250222-0ubuntu1) ...
1043s Setting up python3-cycler (0.12.1-1) ...
1043s Setting up libxinerama1:ppc64el (2:1.1.4-3build1) ...
1043s Setting up libimagequant0:ppc64el (2.18.0-1build1) ...
1043s Setting up pymol-data (3.0.0+dfsg-3build2) ...
1043s Setting up libxkbcommon-x11-0:ppc64el (1.7.0-2) ...
1043s Setting up fonts-dejavu-mono (2.37-8) ...
1043s Setting up python3-kiwisolver (1.4.7-3build1) ...
1043s Setting up libmpc3:ppc64el (1.3.1-1build2) ...
1043s Setting up python3-numpy-dev:ppc64el (1:2.2.3+ds-4) ...
1043s Setting up libxrandr2:ppc64el (2:1.5.4-1) ...
1043s Setting up libtcl8.6:ppc64el (8.6.16+dfsg-1) ...
1043s Setting up fonts-dejavu-core (2.37-8) ...
1043s Setting up libjpeg-turbo8:ppc64el (2.1.5-3ubuntu2) ...
1043s Setting up libgfortran5:ppc64el (15-20250222-0ubuntu1) ...
1043s Setting up libvulkan1:ppc64el (1.4.304.0-1) ...
1043s Setting up python3-pluggy (1.5.0-1) ...
1043s Setting up libwebp7:ppc64el (1.5.0-0.1) ...
1043s Setting up libubsan1:ppc64el (15-20250222-0ubuntu1) ...
1043s Setting up python3-legacy-cgi (2.6.2-1) ...
1043s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
1043s Setting up python3-pyqt5.sip (12.17.0-1build1) ...
1043s Setting up libmtdev1t64:ppc64el (1.1.7-1) ...
1043s Setting up libxshmfence1:ppc64el (1.3-1build5) ...
1043s Setting up at-spi2-common (2.55.90-1) ...
1043s Setting up libccp4c0t64:ppc64el (8.0.0-4) ...
1043s Setting up libxcb-randr0:ppc64el (1.17.0-2) ...
1043s Setting up libasan8:ppc64el (15-20250222-0ubuntu1) ...
1043s Setting up libxslt1.1:ppc64el (1.1.39-0exp1ubuntu2) ...
1043s Setting up libqt5sql5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ...
1043s Setting up libmd4c0:ppc64el (0.5.2-2) ...
1043s Setting up libopenjp2-7:ppc64el (2.5.0-2ubuntu3) ...
1043s Setting up libharfbuzz0b:ppc64el (10.2.0-1) ...
1043s Setting up libthai-data (0.1.29-2build1) ...
1043s Setting up python3-dateutil (2.9.0-3) ...
1043s Setting up python3-flexcache (0.3-2) ...
1043s Setting up libglu1-mesa:ppc64el (9.0.2-1.1build1) ...
1043s Setting up libwayland-egl1:ppc64el (1.23.1-3) ...
1043s Setting up libxss1:ppc64el (1:1.2.3-1build3) ...
1043s Setting up libtsan2:ppc64el (15-20250222-0ubuntu1) ...
1043s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
1043s Setting up libwxbase3.2-1t64:ppc64el (3.2.6+dfsg-2ubuntu1) ...
1043s Setting up python3-mpmath (1.3.0-1) ...
1044s Setting up libisl23:ppc64el (0.27-1) ...
1044s Setting up python-matplotlib-data (3.8.3-7build1) ...
1044s Setting up libwebpmux3:ppc64el (1.5.0-0.1) ...
1044s Setting up libxcomposite1:ppc64el (1:0.4.6-1) ...
1044s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
1044s Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ...
1044s Setting up libcc1-0:ppc64el (15-20250222-0ubuntu1) ...
1044s Setting up python3-procrunner (2.3.3-2) ...
1044s Setting up liblsan0:ppc64el (15-20250222-0ubuntu1) ...
1044s Setting up libsz2:ppc64el (1.1.3-1) ...
1044s Setting up libitm1:ppc64el (15-20250222-0ubuntu1) ...
1044s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
1044s Setting up libann-cctbx-dev (1.1.2+doc-9build1) ...
1044s Setting up libwacom-common (2.14.0-1) ...
1044s Setting up libwayland-client0:ppc64el (1.23.1-3) ...
1044s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ...
1044s Setting up python3-sympy (1.13.3-5) ...
1050s Setting up libice6:ppc64el (2:1.1.1-1) ...
1050s Setting up mesa-libgallium:ppc64el (25.0.1-2ubuntu1) ...
1050s Setting up liblapack3:ppc64el (3.12.1-2) ...
1050s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode
1050s Setting up libqt5dbus5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ...
1050s Setting up libssm2:ppc64el (1.4.0-2build1) ...
1050s Setting up libatk1.0-0t64:ppc64el (2.55.90-1) ...
1050s Setting up libgbm1:ppc64el (25.0.1-2ubuntu1) ...
1050s Setting up libwacom9:ppc64el (2.14.0-1) ...
1050s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
1050s Setting up python3-pytest (8.3.4-1) ...
1051s Setting up libxtst6:ppc64el (2:1.2.5-1) ...
1051s Setting up libwebpdemux2:ppc64el (1.5.0-0.1) ...
1051s Setting up libxcursor1:ppc64el (1:1.2.3-1) ...
1051s Setting up libgl1-mesa-dri:ppc64el (25.0.1-2ubuntu1) ...
1051s Setting up libqt5network5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ...
1051s Setting up libavahi-common3:ppc64el (0.8-16ubuntu1) ...
1051s Setting up libqt5xml5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ...
1051s Setting up dconf-service (0.40.0-5) ...
1051s Setting up libqt5test5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ...
1051s Setting up libccp4f0t64:ppc64el (8.0.0-4) ...
1051s Setting up libinput-bin (1.27.1-1) ...
1051s Setting up python3-pint (0.24.4-1) ...
1051s Setting up libthai0:ppc64el (0.1.29-2build1) ...
1051s Setting up libegl-mesa0:ppc64el (25.0.1-2ubuntu1) ...
1051s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
1051s Setting up libraqm0:ppc64el (0.10.2-1) ...
1051s Setting up libpython3.13-dev:ppc64el (3.13.2-1) ...
1051s Setting up cpp-14-powerpc64le-linux-gnu (14.2.0-17ubuntu3) ...
1051s Setting up python3-numpy (1:2.2.3+ds-4) ...
1053s Setting up libjs-sphinxdoc (8.1.3-4) ...
1053s Setting up cpp-14 (14.2.0-17ubuntu3) ...
1053s Setting up libhdf5-310:ppc64el (1.14.5+repack-3) ...
1053s Setting up python3-lxml:ppc64el (5.3.1-1build1) ...
1053s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu4) ...
1053s Setting up libwayland-cursor0:ppc64el (1.23.1-3) ...
1053s Setting up libegl1:ppc64el (1.7.0-1build1) ...
1053s Setting up libgdk-pixbuf-2.0-0:ppc64el (2.42.12+dfsg-2) ...
1053s Setting up python3-contourpy (1.3.1-1build1) ...
1054s Setting up libfontconfig1:ppc64el (2.15.0-2ubuntu1) ...
1054s Setting up libgcc-14-dev:ppc64el (14.2.0-17ubuntu3) ...
1054s Setting up libstdc++-14-dev:ppc64el (14.2.0-17ubuntu3) ...
1054s Setting up libsm6:ppc64el (2:1.2.4-1) ...
1054s Setting up libavahi-client3:ppc64el (0.8-16ubuntu1) ...
1054s Setting up cpp-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
1054s Setting up gcc-14-powerpc64le-linux-gnu (14.2.0-17ubuntu3) ...
1054s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ...
1054s Setting up python3-mrcfile (1.5.4-2) ...
1054s Setting up libatk-bridge2.0-0t64:ppc64el (2.55.90-1) ...
1054s Setting up libinput10:ppc64el (1.27.1-1) ...
1054s Setting up gtk-update-icon-cache (4.17.5+ds-3ubuntu1) ...
1054s Setting up libhdf5-hl-310:ppc64el (1.14.5+repack-3) ...
1054s Setting up fontconfig (2.15.0-2ubuntu1) ...
1056s Regenerating fonts cache... done.
1056s Setting up libxft2:ppc64el (2.3.6-1build1) ...
1056s Setting up libboost1.83-dev:ppc64el (1.83.0-4.1ubuntu1) ...
1056s Setting up libglx-mesa0:ppc64el (25.0.1-2ubuntu1) ...
1056s Setting up python3-scipy (1.14.1-4ubuntu2) ...
1059s Setting up libpython3-dev:ppc64el (3.13.2-2) ...
1059s Setting up libcbf1t64:ppc64el (0.9.7+dfsg1-5build1) ...
1059s Setting up g++-14-powerpc64le-linux-gnu (14.2.0-17ubuntu3) ...
1059s Setting up libglx0:ppc64el (1.7.0-1build1) ...
1059s Setting up dconf-gsettings-backend:ppc64el (0.40.0-5) ...
1059s Setting up libccp4-dev:ppc64el (8.0.0-4) ...
1059s Setting up python3.13-dev (3.13.2-1) ...
1059s Setting up libtk8.6:ppc64el (8.6.16-1) ...
1059s Setting up libpango-1.0-0:ppc64el (1.56.1-1) ...
1059s Setting up python3.12-tk (3.12.9-1) ...
1059s Setting up libnetcdf22:ppc64el (1:4.9.3-1) ...
1059s Setting up python3-h5py-serial (3.13.0-1) ...
1059s Setting up libcairo2:ppc64el (1.18.2-2) ...
1059s Setting up python3.13-tk (3.13.2-1) ...
1060s Setting up gcc-14 (14.2.0-17ubuntu3) ...
1060s Setting up python3-pil:ppc64el (11.1.0-5build1) ...
1060s Setting up libgl1:ppc64el (1.7.0-1build1) ...
1060s Setting up adwaita-icon-theme (48~beta-3) ...
1060s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
1060s Setting up gcc-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
1060s Setting up libnotify4:ppc64el (0.8.4-1) ...
1060s Setting up python3-dev (3.13.2-2) ...
1060s Setting up libboost-python1.83-dev (1.83.0-4.1ubuntu1) ...
1060s Setting up python3-pycbf (0.9.7+dfsg1-5build1) ...
1060s Setting up python3-h5py (3.13.0-1) ...
1060s Setting up libglew2.2:ppc64el (2.2.0-4build1) ...
1060s Setting up python3-hdf5plugin (5.0.0-1) ...
1060s Setting up cpp (4:14.2.0-1ubuntu1) ...
1060s Setting up libcairo-gobject2:ppc64el (1.18.2-2) ...
1060s Setting up g++-14 (14.2.0-17ubuntu3) ...
1060s Setting up libpangoft2-1.0-0:ppc64el (1.56.1-1) ...
1060s Setting up python3-nxmx (0.0.4-1) ...
1060s Setting up libcups2t64:ppc64el (2.4.11-0ubuntu2) ...
1060s Setting up libgtk-3-common (3.24.48-3ubuntu1) ...
1060s Setting up libpangocairo-1.0-0:ppc64el (1.56.1-1) ...
1060s Setting up g++-powerpc64le-linux-gnu (4:14.2.0-1ubuntu1) ...
1060s Setting up libcctbx0 (2024.10+ds2+~3.22.1+ds1-4build2) ...
1060s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ...
1060s Setting up blt (2.5.3+dfsg-8) ...
1060s Setting up python3-tk:ppc64el (3.13.1-1) ...
1060s Setting up python3-opengl (3.1.7+dfsg-1) ...
1061s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ '
1061s   '''OpenGL extension AMD.vertex_shader_tessellator
1062s Setting up gcc (4:14.2.0-1ubuntu1) ...
1062s Setting up libboost-python-dev (1.83.0.2ubuntu1) ...
1062s Setting up libqt5gui5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ...
1062s Setting up python3-pil.imagetk:ppc64el (11.1.0-5build1) ...
1062s Setting up g++ (4:14.2.0-1ubuntu1) ...
1062s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
1062s Setting up libcctbx-dev (2024.10+ds2+~3.22.1+ds1-4build2) ...
1062s Setting up libqt5widgets5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ...
1062s Setting up libqt5help5:ppc64el (5.15.15-6build1) ...
1062s Setting up libqt5opengl5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ...
1062s Setting up libqt5printsupport5t64:ppc64el (5.15.15+dfsg-4ubuntu1) ...
1062s Setting up libqt5designer5:ppc64el (5.15.15-6build1) ...
1062s Setting up python3-pyqt5 (5.15.11+dfsg-2) ...
1062s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-2) ...
1062s Setting up python3-pymol (3.0.0+dfsg-3build2) ...
1063s Setting up python3-fonttools (4.55.3-2build1) ...
1064s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ...
1064s Setting up python3-matplotlib (3.8.3-7build1) ...
1065s Processing triggers for libc-bin (2.41-1ubuntu1) ...
1065s Processing triggers for man-db (2.13.0-1) ...
1067s Processing triggers for libglib2.0-0t64:ppc64el (2.84.0-1) ...
1067s Setting up libgtk-3-0t64:ppc64el (3.24.48-3ubuntu1) ...
1067s Processing triggers for udev (257.3-1ubuntu3) ...
1068s Setting up libwxgtk3.2-1t64:ppc64el (3.2.6+dfsg-2ubuntu1) ...
1068s Setting up libwxgtk-gl3.2-1t64:ppc64el (3.2.6+dfsg-2ubuntu1) ...
1068s Setting up python3-wxgtk4.0 (4.2.2+dfsg-3build1) ...
1069s Setting up python3-cctbx (2024.10+ds2+~3.22.1+ds1-4build2) ...
1072s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:8: SyntaxWarning: invalid escape sequence '\{'
1072s   """ Iterator to generate strings of length n_chars, using upper-case,
1072s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:46: SyntaxWarning: invalid escape sequence '\/'
1072s   special_characters = """[]_,.;:"&<>()\/\{}'`~!@#$%*|+-"""
1082s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:724: SyntaxWarning: invalid escape sequence '\o'
1082s   width=pairwise_differences_db, label='$\omega_{hkl}$'
1082s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:739: SyntaxWarning: invalid escape sequence '\o'
1082s   axes[0].set_ylabel('Distribution of $\omega_{hbk}$')
1082s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:740: SyntaxWarning: invalid escape sequence '\o'
1082s   axes[0].set_xlabel('Normalized PD ($\omega_{hbk}$)')
1082s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:759: SyntaxWarning: invalid escape sequence '\o'
1082s   axes[1].set_xlabel('Sorted Normalized PD ($\omega_{hbk}$)')
1082s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:778: SyntaxWarning: invalid escape sequence '\s'
1082s   axes[2].set_ylabel('Standard Deviation of $I_{hbk}/\sigma_{hbk}$')
1082s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:807: SyntaxWarning: invalid escape sequence '\m'
1082s   axes_sadd.set_ylabel('$s_{\mathrm{fac}}^2 \\times s_{\mathrm{add}}^2$')
1082s Processing triggers for libc-bin (2.41-1ubuntu1) ...
1083s autopkgtest [14:07:48]: test cctbx: [-----------------------
1083s Testing cctbx with python3.13:
1084s Running 546 tests on 2 processors:
1084s   libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/sample.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/self_match.py"
1084s   "/usr/lib/cctbx/python3.13/boost_adaptbx/tests/tst_optional_copy"
1084s   libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_rational.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_optional.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_std_pair.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_tuple.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stdout.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stderr_stdout.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_deprecation_tools.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_is_periodic.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_reindexing.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_map_to_asu_isym.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_data_manipulation.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_bfgs.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_dev.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry/tests/tst_geometry.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/covariance/tests/tst_covariance.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_goodness_of_symmetry.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_from_map.py" P312
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_aniso_restraints.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/math/boost_python/tst_math.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_targets_fd.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_xray.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray.py" I41/acd
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_r1.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_shelxl_wght_ls.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_f_model.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/array_family/boost_python/tst_flex.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_uctbx.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_crystal_orientation.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/boost_python/tst_sgtbx.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/boost_python/tst_N_fold_rot.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_ext.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_distance_based_connectivity.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_super_cell.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/adptbx/boost_python/tst_adptbx.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/boost_python/tst_miller.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_chemical_elements.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_xray_scattering.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_henke.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_icsd_radii.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_covalent_radii.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_neutron.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_sasaki.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_tiny_pse.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_wavelengths.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_formula.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_attenuation_coefficient.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/boost_python/tst_maptbx.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_bcr.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_loft.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/dmtbx/boost_python/tst_dmtbx.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/translation_search/boost_python/tst_translation_search.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_ext.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_proxy_registry.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_nonbonded_overlaps.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_motif.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/adp_restraints/tst_ext.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_math_module.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_krivy_gruber.py" --Quick
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_denominators.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints.py" P3
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_site_constraints.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reflection_statistics.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_harker.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_twin_target.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/symbol_confidence.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/bravais_types.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_lookup_utils.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal.py" I41/acd
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_direct_space_asu.py" I41/acd
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pair_asu_table.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_coordination_sequences.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_close_packing.py" R-3mr
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_mem.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_mem_2.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py" P312
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_triplet_generator.py" P41
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_emma.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_expand_to_p1.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_change_basis.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_wilson_plot.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_derivatives.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_fast_gradients.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F_sq P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py" Pmmm
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation_2.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_loc_res.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_target_and_gradients.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grouped_data.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_fft_map.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sampled_model_density.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fast_nv1995.py" F222
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_2.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_pickling.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_french_wilson.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/make_cns_input.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/tst_cns_epsilon.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/tst_cns_hl.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/run_shelx76.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pointgroup_tools.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/sub_lattice_tools.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/cosets.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_pg_tools.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_twin_laws.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_find_best_cell.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_amplitude_normalisation.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_statistics_graphs.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_web_change_basis.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/masks/tests/tst_flood_fill.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_r_free_utils.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/observations/tst_observations.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_ccp.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_mask.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_asymmetric_map.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_curves.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_maptbx_box.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_create_models_or_maps.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sphericity.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_statistics.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/merging/brehm_diederichs.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/multipolar/regression/tst_multipolar.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity_allsym.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_modifications.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_wavelength_units.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fcalc_fft_stability.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/cma_es/tst_cma_es.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/fable/tst_ext.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/fable/tst_equivalence.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/fable/tst_read.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/fable/tst_cout.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_show_calls.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_command_line.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_separate_files.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/fable/tst_cout_compile.py" stop
1084s   libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_io.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/gltbx/tst_ellipsoids.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mrc_io.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_wildcard.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/gui_tools/tst.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_simple_parser.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_phil.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_cif_inputs.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_data_manager.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager_wrapping.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_2.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_3.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_4.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_call_consistency.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_external_sharpening_7.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_tls_from_map_8.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_cif.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_local_resolution_10.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_tools.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_patterson.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_restraints_merge.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_atom_selections_10k.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/ranges.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_poscar.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/kriber/tst_strudat.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_geometry.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_lex_parse_build.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_model.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_restraints.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_parser.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_citations.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_model_builder.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_lex_parse_build.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_hklf.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_writer.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_fvar_encoding.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_pdb.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_mmcif.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_mmcif_hierarchy.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_mmcif_hierarchy_2.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_tls.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/hybrid_36.py" exercise
1084s   "/usr/lib/cctbx/python3.13/iotbx/pdb/hybrid_36_fem"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_hierarchy.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_hierarchy_atom_sort.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_selected_hierarchy_flip.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_ext.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_selection.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_rna_dna_atom_names.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_name_interpretation.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/modified_aa_names.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/modified_rna_dna_names.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_sheet.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_annotation.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_annotation_long.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/secondary_structure.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_selection_string.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_secondary_structure.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_utils.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_secondary_structure_2.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/remediation/tst_remediator.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/pdb_to_map_simple.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/pdb_truncate_to_ala/tst.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/pdb_tardy_conf_sampling_simple.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_examples.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cns/space_group_symbols.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/cns/tst_cns.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/tst_merge.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/no_merge_original_index.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/ccp4_map/tst.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_ext.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_extract_from_symmetry_lib.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_dano.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_miller_dict.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_unmerged.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/tst_mtz_free_flipper.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_utils.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_adsc.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_detectors.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/xplor/tst_xplormap.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_phases.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdbx_mmcif_tutorial.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_statistics.py" Fdd2 P31m
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_data_plots.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_csv_utils.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_file_reader.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_bioinformatics.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_segids.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_input.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_multimodel.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_add_conformations.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_symmetry.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reindex.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_editor.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_models.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_as_fasta.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_link_records.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_merging_statistics.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_simple_map_coefficients.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_sort_atoms.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_xparm.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_xds_inp.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_integrate_hkl.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_spots_xds.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_as_cif.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/dsn6/tst.py" P31
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_input.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_read_mtrix_records_from_cif.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_show_systematic_absences.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_miller_sort_asu.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_reader.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_xray_scale.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/tst_alignment_as_hsearch.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/tst_ebi_wu_blast_xml.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/tst_ncbi_blast_xml.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/pdb_info.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cif_as_pdb_1atom.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cif_1.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_data_cif.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_all_chain_ids.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_extract_xtal_data.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cli_parser.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mtz_as_cif.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_group_rounding.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_occupancies_rounding.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_chain_ids_1.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_1.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_2.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_3.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_4.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_copy_select.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_id_str.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_altlocs.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_fetch.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_debug_write.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_reordered_chains.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_to_from_hierarchy.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/metric_prefixes.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_utils.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/test_utils/__init__.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/queuing_system_utils/pbs_utils.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/queuing_system_utils/sge_utils.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/introspection.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_thread_utils.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp_state.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_pickle.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_fully_buffered_timeout.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_scheduling.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/easy_run.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_containers.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_path.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_math_utils.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/assert_utils.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_str_utils.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/table_utils.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_dlite.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_tokenizer.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_experimental.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_interface.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_object_oriented_patterns.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/find_reference_cycles.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_binary_search.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_topological_sort.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/clusterTests.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_citations.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_python_code_parsing.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_representation.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_find_unused_imports.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_program_template.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_version.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp_multicore.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_runtime_utils.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_xmlrpc_utils.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_smoothing.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_genetic_algorithm_with_mp.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_basic.py"
1084s   "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_1"
1084s   "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_2"
1084s   "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_3"
1084s   "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_4"
1084s   "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_5"
1084s   "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_vec3"
1084s   "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_unsigned_float_arithmetic"
1084s   "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_mat3"
1084s   "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_sym_mat3"
1084s   "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_ref_matrix_facet"
1084s   "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_accessors"
1084s   "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_optional_copy"
1084s   "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_rectangular_full_packed"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_flex_argument_passing.py"
1084s   "/usr/lib/cctbx/python3.13/scitbx/serialization/tst_base_256"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_minimum_covering_ellipsoid.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_cubic_equation.py"
1084s   "/usr/lib/cctbx/python3.13/scitbx/math/tests/tst"
1084s   "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_givens"
1084s   "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_householder"
1084s   "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_svd"
1084s   "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_cholesky"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/tests/tst_row_echelon.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/tests/tst_householder.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_matrix.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_cholesky.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_svd.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_eigensystem.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_lapack_svd.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_lapack_dsyev.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/error/tst_error.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_map.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_set.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_vector.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/regression_test.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_flex.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_numpy_bridge.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_smart_selection.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_shared.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_cubicle_neighbors.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_r3_utils.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_regular_grid_on_unit_sphere.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/__init__.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_random_transform.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_graph.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_robust.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/superpose.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/spe.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/incremental_SO3_sampling.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_curve_fitting.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_weighted_correlation.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_similarity_indices.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_exp_functions.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_fit_quadratic_function.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gcd.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_math.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_r3_rotation.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_resample.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_line_search.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gaussian.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_quadrature.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_bessel.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_halton.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_euler_angles.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_superpose.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_uniform_rotation_matrix.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_zernike.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_zernike_mom.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/sieve_of_eratosthenes.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/besselk.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/scale_curves.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_fit_peak.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_clustering.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_orthonormal_basis.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_g_function.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_angle_derivative.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_periodogram.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_error_propagation_matrix_inverse.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_tetrahedron.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_undirected_graph.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tst_so3_lie_algebra.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/minpack/tst.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_ext.py" 
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_curvatures.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgs/tst_func_free_line_search.py"
1084s   "/usr/lib/cctbx/python3.13/scitbx/lbfgs/tst_lbfgs"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/lbfgsb/boost_python/tst_lbfgsb.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/fftpack/boost_python/tst_fftpack.py" 
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/flex_grid.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/flex_array_loops.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/principal_axes_of_inertia.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/lbfgs_recipe.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/lbfgs_linear_least_squares_fit.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/chebyshev_lsq_example.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/immoptibox_ports.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/rigid_body_refinement_core.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/integrating_a_weighted_sinc_function.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/examples/minimizer_comparisons.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_utils.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/rigidity.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_rigidity.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/rigidity_matrix_symbolic.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_tardy_tree_find_paths.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/tst_tardy_tree.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/graph/test_cases_tardy_pdb.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_basic.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_tardy.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/essence/tst_energy_plots.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/tst.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/free_motion_reference_impl.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_featherstone.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_free_motion.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_free_motion_hard.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_joint_lib.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_singular.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_spherical_refinement.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/rigid_body/proto/tst_molecules.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/sparse/tests/tst_sparse.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/sparse/tests/tst_lu_factorization.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/iso_surface/tst_iso_surface.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/simplex.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/differential_evolution.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/golden_section_search.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/direct_search_simulated_annealing.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/random/tests/tst_random.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/lstbx/tests/tst_normal_equations.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/lstbx/tests/test_problems.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/glmtbx/tests/tst.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_basic.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_booth.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/dtmin/regression/tst_dtmin_twisted.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/scitbx/suffixtree/test/tst_single.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/absolute_structure/tests/tst_absolute_structure.py" --fix_random_seeds
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py" --fix_seed --on=E "hall: P 1" "hall: P 3" "hall: -P 2ybc"
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/masks/tests/tst_masks.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/structure_factors/direct/tests/tst_standard_xray.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/tests/tst_weighting_schemes.py" --fix_random_seeds
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py"
1084s   "/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_reparametrisation"
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_occupancies.py"
1084s   "/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens"
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_same_group.py"
1084s   "/usr/lib/cctbx/python3.13/smtbx/refinement/constraints/tests/tst_special_position"
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py" --normal_eqns_solving_method=naive
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_disorder.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py" --normal_eqns_solving_method=levenberg-marquardt
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_rigid.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/constraints/tests/tst_direction.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_adp_restraints.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_manager.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/restraints/tests/tst_restraints.py" --verbose --scatterers=5 --resolution=0.2
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_refine.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/regression/tst_commandline_anomrefine.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/tests/tst_utils.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/smtbx/refinement/tests/tst_least_squares.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/rstbx/dps_core/tst_iotbx_converter.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_predict.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_ewald_sphere.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/tst_partial_derivatives.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/rstbx/diffraction/fastbragg/tst_bragg_minimal.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/rstbx/sublattice_support/tst_sublattice.py"
1084s   libtbx.python -c "from rstbx.run_tests import run; run()"
1084s   libtbx.python "/usr/lib/python3/dist-packages/spotfinder/core_toolbox/boost_python/tst_small_image.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/spotfinder/diffraction/geometry.py"
1084s   libtbx.python "/usr/lib/python3/dist-packages/spotfinder/math_support/sphere_formulae.py"
1084s 
1084s libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/self_match.py" [OK] 0.2s
1084s   Time:  0.24
1084s   Return code: 0
1084s   OKs: 1
1084s   Standard out:
1084s     OK
1084s "/usr/lib/cctbx/python3.13/boost_adaptbx/tests/tst_optional_copy" [OK] 0.0s
1084s   Time:  0.00
1084s   Return code: 0
1084s   OKs: 1
1084s   Standard out:
1084s     OK
1084s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py" [OK] 0.1s
1084s   Time:  0.06
1084s   Return code: 0
1084s   OKs: 1
1084s   Standard out:
1084s     OK
1084s   Standard error:
1084s     show_stack(1): /usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py(9) run
1084s     show_stack(2): /usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_libc_backtrace.py(15) <module>
1084s     libc backtrace (21 frames, most recent call last):
1084s       /lib/powerpc64le-linux-gnu/libc.so.6(__libc_start_main+0x1ac) [0x7bd981e26e8c]
1084s       /lib/powerpc64le-linux-gnu/libc.so.6(+0x26c44) [0x7bd981e26c44]
1084s       /usr/bin/python3.13(Py_BytesMain+0x38) [0x10257398]
1084s       /usr/bin/python3.13() [0x102576d8]
1084s       /usr/bin/python3.13(Py_RunMain+0x3a4) [0x102f0644]
1084s       /usr/bin/python3.13() [0x102f3704]
1084s       /usr/bin/python3.13() [0x102f3a34]
1084s       /usr/bin/python3.13() [0x102f4a50]
1084s       /usr/bin/python3.13() [0x102a7044]
1084s       /usr/bin/python3.13() [0x102aecd8]
1084s       /usr/bin/python3.13(PyEval_EvalCode+0xec) [0x1027498c]
1084s       /usr/bin/python3.13(_PyEval_EvalFrameDefault+0x32dc) [0x100fd60c]
1084s       /usr/bin/python3.13(_PyObject_MakeTpCall+0x328) [0x100d62e8]
1084s       /lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0(+0x29994) [0x7bd981619994]
1084s       /lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0(boost::python::handle_exception_impl(boost::function0<void>)+0xb0) [0x7bd981619650]
1084s       /lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0(+0x303f0) [0x7bd9816203f0]
1084s       /lib/powerpc64le-linux-gnu/libboost_python313.so.1.83.0(boost::python::objects::function::call(_object*, _object*) const+0x110) [0x7bd98161fe70]
1084s       /usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-powerpc64le-linux-gnu.so(+0x1c700) [0x7bd98167c700]
1084s       /usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-powerpc64le-linux-gnu.so(+0x29e2c) [0x7bd981689e2c]
1084s       /usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-powerpc64le-linux-gnu.so(+0x1517c) [0x7bd98167517c]
1084s       /usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-313-powerpc64le-linux-gnu.so(+0x2974c) [0x7bd98168974c]
1084s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_rational.py" [OK] 0.1s
1084s   Time:  0.13
1084s   Return code: 0
1084s   OKs: 1
1084s   Standard out:
1084s     OK
1084s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_optional.py" [OK] 0.1s
1084s   Time:  0.09
1084s   Return code: 0
1084s   OKs: 1
1084s   Standard out:
1084s     exercise_wstring: <Boost.Python.function object at 0x2f877b60>
1084s     OK
1085s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_std_pair.py" [OK] 0.1s
1085s   Time:  0.09
1085s   Return code: 0
1085s   OKs: 1
1085s   Standard out:
1085s     OK
1085s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_tuple.py" [OK] 0.1s
1085s   Time:  0.05
1085s   Return code: 0
1085s   OKs: 1
1085s   Standard out:
1085s     OK
1085s libtbx.python "/usr/lib/python3/dist-packages/annlib_adaptbx/annlib_adaptbx/sample.py" [OK] 0.7s
1085s   Time:  0.71
1085s   Return code: 0
1085s   OKs: 1
1085s   Standard out:
1085s     OK
1085s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stderr_stdout.py" [OK] 0.1s
1085s   Time:  0.06
1085s   Return code: 0
1085s   OKs: 1
1085s   Standard out:
1085s     OK
1085s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_stdout.py" [OK] 0.1s
1085s   Time:  0.11
1085s   Return code: 0
1085s   OKs: 1
1085s   Standard out:
1085s     OK
1085s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_deprecation_tools.py" [OK] 0.1s
1085s   Time:  0.05
1085s   Return code: 0
1085s   OKs: 1
1085s   Standard out:
1085s     OK
1088s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1088s 1
1088s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1088s libtbx.python "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py" [EXPECTED FAIL] 3.1s
1088s   Time:  3.06
1088s   Return code: 1
1088s   OKs: 0
1088s   Standard error:
1088s     Traceback (most recent call last):
1088s       File "/usr/lib/python3/dist-packages/boost_adaptbx/tests/tst_python_streambuf.py", line 7, in <module>
1088s         import StringIO
1088s     ModuleNotFoundError: No module named 'StringIO'
1089s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1089s 139
1089s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1089s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py" [FAIL] 4.4s
1089s   Time:  4.36
1089s   Return code: 139
1089s   OKs: 0
1089s   Standard error:
1089s     Segmentation fault (core dumped)
1092s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1092s 139
1092s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1092s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py" [FAIL] 4.5s
1092s   Time:  4.45
1092s   Return code: 139
1092s   OKs: 0
1092s   Standard error:
1092s     Segmentation fault (core dumped)
1095s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1095s 139
1095s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1095s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_is_periodic.py" [FAIL] 6.2s
1095s   Time:  6.20
1095s   Return code: 139
1095s   OKs: 0
1095s   Standard error:
1095s     Segmentation fault (core dumped)
1096s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_map_to_asu_isym.py" [OK] 0.5s
1096s   Time:  0.50
1096s   Return code: 0
1096s   OKs: 1
1096s   Standard out:
1096s     OK
1098s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1099s 139
1099s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1099s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/tst_reindexing.py" [FAIL] 6.1s
1099s   Time:  6.09
1099s   Return code: 139
1099s   OKs: 0
1099s   Standard error:
1099s     Segmentation fault (core dumped)
1101s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1101s 139
1101s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1101s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_data_manipulation.py" [FAIL] 5.7s
1101s   Time:  5.65
1101s   Return code: 139
1101s   OKs: 0
1101s   Standard error:
1101s     Segmentation fault (core dumped)
1104s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1104s 139
1104s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1104s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_bfgs.py" [FAIL] 5.8s
1104s   Time:  5.81
1104s   Return code: 139
1104s   OKs: 0
1104s   Standard error:
1104s     Segmentation fault (core dumped)
1107s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1107s 139
1107s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1107s libtbx.python "/usr/lib/python3/dist-packages/cctbx/omz/tst_dev.py" P31 [FAIL] 5.7s
1107s   Time:  5.73
1107s   Return code: 139
1107s   OKs: 0
1107s   Standard error:
1107s     Segmentation fault (core dumped)
1110s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1110s 139
1110s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1110s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry/tests/tst_geometry.py" [FAIL] 6.2s
1110s   Time:  6.16
1110s   Return code: 139
1110s   OKs: 0
1110s   Standard error:
1110s     Segmentation fault (core dumped)
1113s   Standard error:
1113s     Segmentation fault (core dumped)
1113s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1113s 139
1113s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1113s libtbx.python "/usr/lib/python3/dist-packages/cctbx/covariance/tests/tst_covariance.py" [FAIL] 6.0s
1113s   Time:  6.03
1113s   Return code: 139
1113s   OKs: 0
1116s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1116s 139
1116s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1116s libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_goodness_of_symmetry.py" [FAIL] 5.9s
1116s   Time:  5.87
1116s   Return code: 139
1116s   OKs: 0
1116s   Standard error:
1116s     Segmentation fault (core dumped)
1116s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_aniso_restraints.py" [OK] 0.2s
1116s   Time:  0.23
1116s   Return code: 0
1116s   OKs: 1
1116s   Standard out:
1116s     Skipping exercise(): chem_data directory not available
1116s     OK
1116s libtbx.python "/usr/lib/python3/dist-packages/cctbx/math/boost_python/tst_math.py" [OK] 0.1s
1116s   Time:  0.10
1116s   Return code: 0
1116s   OKs: 1
1116s   Standard out:
1116s     OK
1117s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_targets_fd.py" [OK] 0.4s
1117s   Time:  0.43
1117s   Return code: 0
1117s   OKs: 1
1117s   Standard out:
1117s     OK
1119s   Standard error:
1119s     Segmentation fault (core dumped)
1119s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1119s 139
1119s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1119s libtbx.python "/usr/lib/python3/dist-packages/cctbx/symmetry_search/tests/tst_from_map.py" P312 [FAIL] 5.9s
1119s   Time:  5.94
1119s   Return code: 139
1119s   OKs: 0
1122s   Standard error:
1122s     Segmentation fault (core dumped)
1122s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1122s 139
1122s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1122s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_xray.py" [FAIL] 5.4s
1122s   Time:  5.44
1122s   Return code: 139
1122s   OKs: 0
1125s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1125s 139
1125s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1125s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray.py" I41/acd [FAIL] 6.3s
1125s   Time:  6.27
1125s   Return code: 139
1125s   OKs: 0
1125s   Standard error:
1125s     Segmentation fault (core dumped)
1128s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1128s 139
1128s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1128s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_r1.py" [FAIL] 6.0s
1128s   Standard error:
1128s     Segmentation fault (core dumped)
1128s   Time:  5.96
1128s   Return code: 139
1128s   OKs: 0
1131s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1131s 139
1131s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1131s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/targets/tst_shelxl_wght_ls.py" [FAIL] 5.8s
1131s   Time:  5.77
1131s   Return code: 139
1131s   OKs: 0
1131s   Standard error:
1131s     Segmentation fault (core dumped)
1134s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1134s 139
1134s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1134s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/boost_python/tst_f_model.py" [FAIL] 5.8s
1134s   Time:  5.81
1134s   Return code: 139
1134s   OKs: 0
1134s   Standard error:
1134s     Segmentation fault (core dumped)
1137s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1137s 139
1137s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1137s libtbx.python "/usr/lib/python3/dist-packages/cctbx/array_family/boost_python/tst_flex.py" [FAIL] 5.8s
1137s   Time:  5.78
1137s   Return code: 139
1137s   OKs: 0
1137s   Standard error:
1137s     Segmentation fault (core dumped)
1140s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1140s 139
1140s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1140s libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_uctbx.py" [FAIL] 5.6s
1140s   Time:  5.64
1140s   Return code: 139
1140s   OKs: 0
1140s   Standard error:
1140s     Segmentation fault (core dumped)
1143s   Standard error:
1143s     Segmentation fault (core dumped)
1143s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1143s 139
1143s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1143s libtbx.python "/usr/lib/python3/dist-packages/cctbx/uctbx/boost_python/tst_crystal_orientation.py" [FAIL] 5.5s
1143s   Time:  5.55
1143s   Return code: 139
1143s   OKs: 0
1143s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/boost_python/tst_N_fold_rot.py" [OK] 0.2s
1143s   Time:  0.20
1143s   Return code: 0
1143s   OKs: 1
1143s   Standard out:
1143s     OK
1146s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1146s 139
1146s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1146s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/boost_python/tst_sgtbx.py" [FAIL] 5.8s
1146s   Time:  5.79
1146s   Return code: 139
1146s   OKs: 0
1146s   Standard error:
1146s     Segmentation fault (core dumped)
1149s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1149s 139
1149s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1149s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_ext.py" [FAIL] 6.0s
1149s   Time:  6.01
1149s   Return code: 139
1149s   OKs: 0
1149s   Standard error:
1149s     Segmentation fault (core dumped)
1151s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1151s 139
1151s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1151s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_distance_based_connectivity.py" [FAIL] 5.8s
1151s   Time:  5.80
1151s   Return code: 139
1151s   OKs: 0
1151s   Standard error:
1151s     Segmentation fault (core dumped)
1155s   Standard error:
1155s     Segmentation fault (core dumped)
1155s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1155s 139
1155s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1155s libtbx.python "/usr/lib/python3/dist-packages/cctbx/crystal/tst_super_cell.py" [FAIL] 6.6s
1155s   Time:  6.59
1155s   Return code: 139
1155s   OKs: 0
1158s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1158s 139
1158s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1158s libtbx.python "/usr/lib/python3/dist-packages/cctbx/adptbx/boost_python/tst_adptbx.py" [FAIL] 7.1s
1158s   Time:  7.08
1158s   Return code: 139
1158s   OKs: 0
1158s   Standard error:
1158s     Segmentation fault (core dumped)
1159s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_chemical_elements.py" [OK] 0.1s
1159s   Time:  0.10
1159s   Return code: 0
1159s   OKs: 1
1159s   Standard out:
1159s     OK
1162s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1162s 139
1162s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1162s libtbx.python "/usr/lib/python3/dist-packages/cctbx/miller/boost_python/tst_miller.py" [FAIL] 6.4s
1162s   Standard error:
1162s     Segmentation fault (core dumped)
1162s   Time:  6.35
1162s   Return code: 139
1162s   OKs: 0
1162s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_henke.py" [OK] 0.1s
1162s   Time:  0.09
1162s   Return code: 0
1162s   OKs: 1
1162s   Standard out:
1162s     OK
1162s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_icsd_radii.py" [OK] 0.1s
1162s   Time:  0.11
1162s   Return code: 0
1162s   OKs: 1
1162s   Standard out:
1162s     OK
1162s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_covalent_radii.py" [OK] 0.1s
1162s   Time:  0.10
1162s   Return code: 0
1162s   OKs: 1
1162s   Standard out:
1162s     OK
1162s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_neutron.py" [OK] 0.1s
1162s   Time:  0.10
1162s   Return code: 0
1162s   OKs: 1
1162s   Standard out:
1162s     OK
1162s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_sasaki.py" [OK] 0.1s
1162s   Time:  0.10
1162s   Return code: 0
1162s   OKs: 1
1162s   Standard out:
1162s     OK
1162s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_tiny_pse.py" [OK] 0.1s
1162s   Time:  0.09
1162s   Return code: 0
1162s   OKs: 1
1162s   Standard out:
1162s     OK
1162s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_wavelengths.py" [OK] 0.1s
1162s   Time:  0.09
1162s   Return code: 0
1162s   OKs: 1
1162s   Standard out:
1162s     OK
1165s   Standard error:
1165s     Segmentation fault (core dumped)
1165s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1165s 139
1165s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1165s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_xray_scattering.py" [FAIL] 6.3s
1165s   Time:  6.30
1165s   Return code: 139
1165s   OKs: 0
1168s   Standard error:
1168s     Segmentation fault (core dumped)
1168s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1168s 139
1168s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1168s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_formula.py" [FAIL] 5.5s
1168s   Time:  5.46
1168s   Return code: 139
1168s   OKs: 0
1171s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1171s 139
1171s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1171s libtbx.python "/usr/lib/python3/dist-packages/cctbx/eltbx/tests/tst_attenuation_coefficient.py" [FAIL] 5.7s
1171s   Time:  5.72
1171s   Return code: 139
1171s   OKs: 0
1171s   Standard error:
1171s     Segmentation fault (core dumped)
1174s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1174s 139
1174s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1174s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/boost_python/tst_maptbx.py" [FAIL] 5.9s
1174s   Time:  5.88
1174s   Return code: 139
1174s   OKs: 0
1174s   Standard error:
1174s     Segmentation fault (core dumped)
1178s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1178s 139
1178s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1178s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_bcr.py" [FAIL] 7.2s
1178s   Time:  7.16
1178s   Return code: 139
1178s   OKs: 0
1178s   Standard error:
1178s     Segmentation fault (core dumped)
1181s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1181s 139
1181s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1181s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_loft.py" [FAIL] 7.4s
1181s   Time:  7.39
1181s   Return code: 139
1181s   OKs: 0
1181s   Standard error:
1181s     Segmentation fault (core dumped)
1184s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1184s 139
1184s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1184s libtbx.python "/usr/lib/python3/dist-packages/cctbx/dmtbx/boost_python/tst_dmtbx.py" [FAIL] 6.1s
1184s   Time:  6.15
1184s   Return code: 139
1184s   OKs: 0
1184s   Standard error:
1184s     Segmentation fault (core dumped)
1187s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1187s 139
1187s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1187s libtbx.python "/usr/lib/python3/dist-packages/cctbx/translation_search/boost_python/tst_translation_search.py" [FAIL] 5.5s
1187s   Standard error:
1187s     Segmentation fault (core dumped)
1187s   Time:  5.46
1187s   Return code: 139
1187s   OKs: 0
1187s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_proxy_registry.py" [OK] 0.2s
1187s   Time:  0.22
1187s   Return code: 0
1187s   OKs: 1
1187s   Standard out:
1187s     OK
1187s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_nonbonded_overlaps.py" [OK] 0.7s
1187s   Time:  0.73
1187s   Return code: 0
1187s   OKs: 0
1187s   Standard out:
1187s     chem_data not present, skipping
1188s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py" [OK] 0.7s
1188s   Time:  0.72
1188s   Return code: 0
1188s   OKs: 0
1188s   Standard out:
1188s     Test skipped, need monomer library
1190s   Standard error:
1190s     Segmentation fault (core dumped)
1190s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1190s 139
1190s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1190s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_ext.py" [FAIL] 6.0s
1190s   Time:  6.04
1190s   Return code: 139
1190s   OKs: 0
1190s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_motif.py" [OK] 0.3s
1190s   Time:  0.27
1190s   Return code: 0
1190s   OKs: 0
1190s   Standard out:
1190s     u+s,u,s: 0.22 0.21 0.01
1193s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1193s 139
1193s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1193s libtbx.python "/usr/lib/python3/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py" [FAIL] 4.7s
1193s   Standard error:
1193s     Segmentation fault (core dumped)
1193s   Time:  4.73
1193s   Return code: 139
1193s   OKs: 0
1193s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_math_module.py" [OK] 0.1s
1193s   Time:  0.08
1193s   Return code: 0
1193s   OKs: 1
1193s   Standard out:
1193s     OK
1196s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1196s 139
1196s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1196s libtbx.python "/usr/lib/python3/dist-packages/cctbx/adp_restraints/tst_ext.py" [FAIL] 5.8s
1196s   Time:  5.80
1196s   Return code: 139
1196s   OKs: 0
1196s   Standard error:
1196s     Segmentation fault (core dumped)
1199s   Standard error:
1199s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1199s 139
1199s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1199s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_krivy_gruber.py" --Quick [FAIL] 5.7s
1199s   Time:  5.69
1199s   Return code: 139
1199s   OKs: 0
1199s     Segmentation fault (core dumped)
1199s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py" [OK] 0.2s
1199s   Time:  0.18
1199s   Return code: 0
1199s   OKs: 1
1199s   Standard out:
1199s     Skipping exercise(): input file not available
1199s     OK
1201s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1201s 139
1201s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1201s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx.py" [FAIL] 5.5s
1201s   Time:  5.52
1201s   Return code: 139
1201s   OKs: 0
1201s   Standard error:
1201s     Segmentation fault (core dumped)
1204s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1204s 139
1204s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1204s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py" [FAIL] 5.3s
1204s   Standard error:
1204s     Segmentation fault (core dumped)
1204s   Time:  5.33
1204s   Return code: 139
1204s   OKs: 0
1207s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1207s 139
1207s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1207s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_denominators.py" P31 [FAIL] 5.5s
1207s   Standard error:
1207s     Segmentation fault (core dumped)
1207s   Time:  5.51
1207s   Return code: 139
1207s   OKs: 0
1210s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1210s 139
1210s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1210s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py" [FAIL] 5.4s
1210s   Time:  5.39
1210s   Return code: 139
1210s   OKs: 0
1210s   Standard error:
1210s     Segmentation fault (core dumped)
1212s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1212s 139
1212s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1212s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py" [FAIL] 5.3s
1212s   Time:  5.30
1212s   Return code: 139
1212s   OKs: 0
1212s   Standard error:
1212s     Segmentation fault (core dumped)
1215s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1215s 139
1215s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1215s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints.py" P3 [FAIL] 5.5s
1215s   Time:  5.50
1215s   Return code: 139
1215s   OKs: 0
1215s   Standard error:
1215s     Segmentation fault (core dumped)
1215s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_site_constraints.py" [OK] 0.4s
1215s   Time:  0.36
1215s   Return code: 0
1215s   OKs: 0
1215s   Standard out:
1215s     Skipping process_zeolite_atlas(): input file not available
1215s     u+s,u,s: 0.30 0.27 0.03
1218s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1218s 139
1218s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1218s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py" [FAIL] 5.6s
1218s   Time:  5.62
1218s   Return code: 139
1218s   OKs: 0
1218s   Standard error:
1218s     Segmentation fault (core dumped)
1221s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1221s 139
1221s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1221s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reflection_statistics.py" [FAIL] 5.2s
1221s   Time:  5.24
1221s   Return code: 139
1221s   OKs: 0
1221s   Standard error:
1221s     Segmentation fault (core dumped)
1223s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1223s 139
1223s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1223s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_harker.py" [FAIL] 5.5s
1223s   Time:  5.51
1223s   Return code: 139
1223s   OKs: 0
1223s   Standard error:
1223s     Segmentation fault (core dumped)
1226s   Standard error:
1226s     Segmentation fault (core dumped)
1226s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1226s 139
1226s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1226s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py" [FAIL] 5.5s
1226s   Time:  5.49
1226s   Return code: 139
1226s   OKs: 0
1229s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1229s 139
1229s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1229s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_twin_target.py" [FAIL] 5.7s
1229s   Time:  5.67
1229s   Return code: 139
1229s   OKs: 0
1229s   Standard error:
1229s     Segmentation fault (core dumped)
1232s   Standard error:
1232s     Segmentation fault (core dumped)
1232s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1232s 139
1232s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1232s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/symbol_confidence.py" [FAIL] 5.4s
1232s   Time:  5.36
1232s   Return code: 139
1232s   OKs: 0
1234s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1234s 139
1234s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1234s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/bravais_types.py" [FAIL] 5.1s
1234s   Standard error:
1234s     Segmentation fault (core dumped)
1234s   Time:  5.08
1234s   Return code: 139
1234s   OKs: 0
1237s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1237s 139
1237s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1237s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_lookup_utils.py" [FAIL] 5.4s
1237s   Time:  5.35
1237s   Return code: 139
1237s   OKs: 0
1237s   Standard error:
1237s     Segmentation fault (core dumped)
1240s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1240s 139
1240s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1240s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal.py" I41/acd [FAIL] 5.8s
1240s   Time:  5.83
1240s   Return code: 139
1240s   OKs: 0
1240s   Standard error:
1240s     Segmentation fault (core dumped)
1243s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1243s 139
1243s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1243s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_direct_space_asu.py" I41/acd [FAIL] 6.4s
1243s   Standard error:
1243s     Segmentation fault (core dumped)
1243s   Time:  6.38
1243s   Return code: 139
1243s   OKs: 0
1246s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1246s 139
1246s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1246s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pair_asu_table.py" [FAIL] 6.3s
1246s   Time:  6.34
1246s   Return code: 139
1246s   OKs: 0
1246s   Standard error:
1246s     Segmentation fault (core dumped)
1247s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_coordination_sequences.py" [OK] 0.4s
1247s   Time:  0.37
1247s   Return code: 0
1247s   OKs: 1
1247s   Standard out:
1247s     Skipping exercise(): input file not available
1247s     OK
1249s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1249s 139
1249s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1249s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py" [FAIL] 5.7s
1249s   Time:  5.66
1249s   Return code: 139
1249s   OKs: 0
1249s   Standard error:
1249s     Segmentation fault (core dumped)
1252s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1252s 139
1252s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1252s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_crystal_close_packing.py" R-3mr [FAIL] 5.3s
1252s   Time:  5.31
1252s   Return code: 139
1252s   OKs: 0
1252s   Standard error:
1252s     Segmentation fault (core dumped)
1255s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1255s 139
1255s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1255s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py" P31 [FAIL] 5.7s
1255s   Time:  5.72
1255s   Return code: 139
1255s   OKs: 0
1255s   Standard error:
1255s     Segmentation fault (core dumped)
1258s   Standard error:
1258s     Segmentation fault (core dumped)
1258s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1258s 139
1258s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1258s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller.py" P31 [FAIL] 5.9s
1258s   Time:  5.89
1258s   Return code: 139
1258s   OKs: 0
1258s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_mem_2.py" [OK] 0.3s
1258s   Time:  0.31
1258s   Return code: 0
1258s   OKs: 0
1258s   Standard out:
1258s     Skipping test: phenix not available
1261s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1261s 139
1261s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1261s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_mem.py" [FAIL] 6.1s
1261s   Time:  6.11
1261s   Return code: 139
1261s   OKs: 0
1261s   Standard error:
1261s     Segmentation fault (core dumped)
1263s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1263s 139
1263s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1263s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py" P312 [FAIL] 5.3s
1263s   Time:  5.30
1263s   Return code: 139
1263s   OKs: 0
1263s   Standard error:
1263s     Segmentation fault (core dumped)
1266s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1266s 139
1266s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1266s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_triplet_generator.py" P41 [FAIL] 5.5s
1266s   Time:  5.47
1266s   Return code: 139
1266s   OKs: 0
1266s   Standard error:
1266s     Segmentation fault (core dumped)
1269s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1269s 139
1269s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1269s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_emma.py" P31 [FAIL] 6.0s
1269s   Standard error:
1269s     Segmentation fault (core dumped)
1269s   Time:  5.99
1269s   Return code: 139
1269s   OKs: 0
1272s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1272s 139
1272s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1272s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_expand_to_p1.py" P31 [FAIL] 6.1s
1272s   Time:  6.06
1272s   Return code: 139
1272s   OKs: 0
1272s   Standard error:
1272s     Segmentation fault (core dumped)
1275s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1275s 139
1275s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1275s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_change_basis.py" P31 [FAIL] 5.7s
1275s   Time:  5.73
1275s   Return code: 139
1275s   OKs: 0
1275s   Standard error:
1275s     Segmentation fault (core dumped)
1278s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1278s 139
1278s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1278s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_wilson_plot.py" P31 [FAIL] 5.7s
1278s   Time:  5.68
1278s   Return code: 139
1278s   OKs: 0
1278s   Standard error:
1278s     Segmentation fault (core dumped)
1281s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1281s 139
1281s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1281s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_derivatives.py" P31 [FAIL] 6.0s
1281s   Time:  6.05
1281s   Return code: 139
1281s   OKs: 0
1281s   Standard error:
1281s     Segmentation fault (core dumped)
1284s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1284s 139
1284s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1284s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_fast_gradients.py" P31 [FAIL] 6.3s
1284s   Time:  6.32
1284s   Return code: 139
1284s   OKs: 0
1284s   Standard error:
1284s     Segmentation fault (core dumped)
1287s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1287s 139
1287s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1287s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F P31 [FAIL] 6.0s
1287s   Time:  6.01
1287s   Return code: 139
1287s   OKs: 0
1287s   Standard error:
1287s     Segmentation fault (core dumped)
1287s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1287s 139
1287s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1287s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_xray_minimization.py" --F_sq P31 [FAIL] 2.9s
1287s   Time:  2.95
1287s   Return code: 139
1287s   OKs: 0
1287s   Standard error:
1287s     Segmentation fault (core dumped)
1290s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1290s 139
1290s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1290s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py" Pmmm [FAIL] 3.0s
1290s   Time:  3.05
1290s   Return code: 139
1290s   OKs: 0
1290s   Standard error:
1290s     Segmentation fault (core dumped)
1294s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1294s 139
1294s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1294s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py" P31 [FAIL] 6.4s
1294s   Time:  6.40
1294s   Return code: 139
1294s   OKs: 0
1294s   Standard error:
1294s     Segmentation fault (core dumped)
1297s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1297s 139
1297s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1297s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py" [FAIL] 6.4s
1297s   Time:  6.40
1297s   Return code: 139
1297s   OKs: 0
1297s   Standard error:
1297s     Segmentation fault (core dumped)
1300s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1300s 139
1300s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1300s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation.py" [FAIL] 5.9s
1300s   Time:  5.88
1300s   Return code: 139
1300s   OKs: 0
1300s   Standard error:
1300s     Segmentation fault (core dumped)
1303s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1303s 139
1303s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1303s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_interpolation_2.py" [FAIL] 5.8s
1303s   Time:  5.83
1303s   Return code: 139
1303s   OKs: 0
1303s   Standard error:
1303s     Segmentation fault (core dumped)
1307s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1307s 139
1307s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1307s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_loc_res.py" [FAIL] 7.4s
1307s   Time:  7.40
1307s   Return code: 139
1307s   OKs: 0
1307s   Standard error:
1307s     Segmentation fault (core dumped)
1310s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1310s 139
1310s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1310s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_target_and_gradients.py" [FAIL] 7.3s
1310s   Time:  7.31
1310s   Return code: 139
1310s   OKs: 0
1310s   Standard error:
1310s     Segmentation fault (core dumped)
1313s   Standard error:
1313s     Segmentation fault (core dumped)
1313s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1313s 139
1313s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1313s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py" P31 [FAIL] 6.1s
1313s   Time:  6.14
1313s   Return code: 139
1313s   OKs: 0
1316s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1316s 139
1316s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1316s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grouped_data.py" P31 [FAIL] 6.1s
1316s   Time:  6.15
1316s   Return code: 139
1316s   OKs: 0
1316s   Standard error:
1316s     Segmentation fault (core dumped)
1319s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1319s 139
1319s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1319s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_fft_map.py" P31 [FAIL] 5.8s
1319s   Time:  5.77
1319s   Return code: 139
1319s   OKs: 0
1319s   Standard error:
1319s     Segmentation fault (core dumped)
1322s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1322s 139
1322s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1322s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sampled_model_density.py" P31 [FAIL] 5.7s
1322s   Time:  5.73
1322s   Return code: 139
1322s   OKs: 0
1322s   Standard error:
1322s     Segmentation fault (core dumped)
1323s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints.py" [OK] 0.8s
1323s   Time:  0.83
1323s   Return code: 0
1323s   OKs: 1
1323s   Standard out:
1323s     OK
1325s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1325s 139
1325s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1325s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fast_nv1995.py" F222 [FAIL] 6.1s
1325s   Standard error:
1325s     Segmentation fault (core dumped)
1325s   Time:  6.06
1325s   Return code: 139
1325s   OKs: 0
1328s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1328s 139
1328s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1328s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py" [FAIL] 5.4s
1328s   Standard error:
1328s     Segmentation fault (core dumped)
1328s   Time:  5.38
1328s   Return code: 139
1328s   OKs: 0
1328s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_pickling.py" [OK] 0.4s
1328s   Time:  0.45
1328s   Return code: 0
1328s   OKs: 0
1328s   Standard out:
1328s     Can not initialize monomer_library, skipping test.
1331s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1331s 139
1331s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1331s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_geometry_restraints_2.py" [FAIL] 6.5s
1331s   Time:  6.54
1331s   Return code: 139
1331s   OKs: 0
1331s   Standard error:
1331s     Segmentation fault (core dumped)
1334s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1334s 139
1334s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1334s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_french_wilson.py" [FAIL] 5.9s
1334s   Time:  5.90
1334s   Return code: 139
1334s   OKs: 0
1334s   Standard error:
1334s     Segmentation fault (core dumped)
1335s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/tst_cns_epsilon.py" P31 [OK] 0.3s
1335s   Time:  0.31
1335s   Return code: 0
1335s   OKs: 0
1335s   Standard out:
1335s     Skipping tests: cns not available.
1335s     u+s,u,s: 0.26 0.23 0.03
1335s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/tst_cns_hl.py" P31 [OK] 0.3s
1335s   Time:  0.29
1335s   Return code: 0
1335s   OKs: 0
1335s   Standard out:
1335s     Skipping tests: cns not available.
1335s     u+s,u,s: 0.24 0.23 0.01
1335s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/run_shelx76.py" P31 [OK] 0.3s
1335s   Time:  0.31
1335s   Return code: 0
1335s   OKs: 0
1335s   Standard out:
1335s     shelx76 not available.
1337s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1337s 139
1337s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1337s libtbx.python "/usr/lib/python3/dist-packages/cctbx/development/make_cns_input.py" P31 [FAIL] 6.0s
1337s   Time:  5.98
1337s   Return code: 139
1337s   OKs: 0
1337s   Standard error:
1337s     Segmentation fault (core dumped)
1340s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1340s 139
1340s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1340s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_pointgroup_tools.py" [FAIL] 5.0s
1340s   Time:  5.02
1340s   Return code: 139
1340s   OKs: 0
1340s   Standard error:
1340s     Segmentation fault (core dumped)
1343s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1343s 139
1343s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1343s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/sub_lattice_tools.py" [FAIL] 5.7s
1343s   Time:  5.73
1343s   Return code: 139
1343s   OKs: 0
1343s   Standard error:
1343s     Segmentation fault (core dumped)
1346s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1346s 139
1346s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1346s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py" [FAIL] 5.6s
1346s   Time:  5.61
1346s   Return code: 139
1346s   OKs: 0
1346s   Standard error:
1346s     Segmentation fault (core dumped)
1348s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1348s 139
1348s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1348s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/cosets.py" [FAIL] 5.3s
1348s   Time:  5.28
1348s   Return code: 139
1348s   OKs: 0
1348s   Standard error:
1348s     Segmentation fault (core dumped)
1351s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1351s 139
1351s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1351s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_pg_tools.py" [FAIL] 5.3s
1351s   Time:  5.29
1351s   Return code: 139
1351s   OKs: 0
1351s   Standard error:
1351s     Segmentation fault (core dumped)
1354s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1354s 139
1354s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1354s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/reticular_twin_laws.py" [FAIL] 5.4s
1354s   Time:  5.44
1354s   Return code: 139
1354s   OKs: 0
1354s   Standard error:
1354s     Segmentation fault (core dumped)
1357s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1357s 139
1357s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1357s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_find_best_cell.py" [FAIL] 5.5s
1357s   Time:  5.49
1357s   Return code: 139
1357s   OKs: 0
1357s   Standard error:
1357s     Segmentation fault (core dumped)
1359s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1359s 139
1359s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1359s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_amplitude_normalisation.py" [FAIL] 5.5s
1359s   Time:  5.47
1359s   Return code: 139
1359s   OKs: 0
1359s   Standard error:
1359s     Segmentation fault (core dumped)
1362s   Standard error:
1362s     Segmentation fault (core dumped)
1362s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1362s 139
1362s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1362s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_statistics_graphs.py" [FAIL] 5.7s
1362s   Time:  5.71
1362s   Return code: 139
1362s   OKs: 0
1365s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1365s 139
1365s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1365s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_web_change_basis.py" [FAIL] 5.6s
1365s   Time:  5.58
1365s   Return code: 139
1365s   OKs: 0
1365s   Standard error:
1365s     Segmentation fault (core dumped)
1369s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1369s 139
1369s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1369s libtbx.python "/usr/lib/python3/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py" [FAIL] 5.6s
1369s   Time:  5.56
1369s   Return code: 139
1369s   OKs: 0
1369s   Standard error:
1369s     Segmentation fault (core dumped)
1371s   Standard error:
1371s     Segmentation fault (core dumped)
1371s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1371s 139
1371s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1371s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py" [FAIL] 5.7s
1371s   Time:  5.71
1371s   Return code: 139
1371s   OKs: 0
1373s   Standard error:
1373s     Segmentation fault (core dumped)
1373s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1373s 139
1373s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1373s libtbx.python "/usr/lib/python3/dist-packages/cctbx/masks/tests/tst_flood_fill.py" [FAIL] 5.5s
1373s   Time:  5.47
1373s   Return code: 139
1373s   OKs: 0
1374s libtbx.python "/usr/lib/python3/dist-packages/cctbx/xray/observations/tst_observations.py" [OK] 0.2s
1374s   Time:  0.25
1374s   Return code: 0
1374s   OKs: 1
1374s   Standard out:
1374s     OK
1377s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1377s 139
1377s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1377s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_r_free_utils.py" [FAIL] 6.2s
1377s   Time:  6.17
1377s   Return code: 139
1377s   OKs: 0
1377s   Standard error:
1377s     Segmentation fault (core dumped)
1380s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1380s 139
1380s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1380s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_ccp.py" [FAIL] 6.2s
1380s   Standard error:
1380s     Segmentation fault (core dumped)
1380s   Time:  6.16
1380s   Return code: 139
1380s   OKs: 0
1383s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1383s 139
1383s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1383s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_mask.py" [FAIL] 6.0s
1383s   Time:  6.02
1383s   Return code: 139
1383s   OKs: 0
1383s   Standard error:
1383s     Segmentation fault (core dumped)
1386s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1386s 139
1386s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1386s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py" [FAIL] 6.2s
1386s   Time:  6.19
1386s   Return code: 139
1386s   OKs: 0
1386s   Standard error:
1386s     Segmentation fault (core dumped)
1389s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1389s 139
1389s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1389s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_asymmetric_map.py" [FAIL] 6.0s
1389s   Time:  5.96
1389s   Return code: 139
1389s   OKs: 0
1389s   Standard error:
1389s     Segmentation fault (core dumped)
1392s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1392s 139
1392s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1392s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py" [FAIL] 5.7s
1392s   Time:  5.73
1392s   Return code: 139
1392s   OKs: 0
1392s   Standard error:
1392s     Segmentation fault (core dumped)
1395s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1395s 139
1395s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1395s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py" [FAIL] 5.8s
1395s   Time:  5.85
1395s   Return code: 139
1395s   OKs: 0
1395s   Standard error:
1395s     Segmentation fault (core dumped)
1398s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1398s 139
1398s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1398s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_curves.py" [FAIL] 5.8s
1398s   Standard error:
1398s     Segmentation fault (core dumped)
1398s   Time:  5.81
1398s   Return code: 139
1398s   OKs: 0
1400s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1400s 139
1400s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1400s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py" [FAIL] 5.7s
1400s   Time:  5.67
1400s   Return code: 139
1400s   OKs: 0
1400s   Standard error:
1400s     Segmentation fault (core dumped)
1401s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_maptbx_box.py" [OK] 0.7s
1401s   Time:  0.72
1401s   Return code: 0
1401s   OKs: 0
1401s   Standard out:
1401s     phenix is not available, skipping test
1402s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_create_models_or_maps.py" [OK] 0.7s
1402s   Time:  0.71
1402s   Return code: 0
1402s   OKs: 1
1402s   Standard out:
1402s     Skipping exercise(): chem_data directory not available
1402s     OK
1403s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1403s 139
1403s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1403s libtbx.python "/usr/lib/python3/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py" [FAIL] 5.8s
1403s   Time:  5.80
1403s   Return code: 139
1403s   OKs: 0
1403s   Standard error:
1403s     Segmentation fault (core dumped)
1406s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1406s 139
1406s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1406s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_sphericity.py" [FAIL] 4.4s
1406s   Time:  4.40
1406s   Return code: 139
1406s   OKs: 0
1406s   Standard error:
1406s     Segmentation fault (core dumped)
1406s libtbx.python "/usr/lib/python3/dist-packages/cctbx/merging/brehm_diederichs.py" [OK] 0.2s
1406s   Time:  0.24
1406s   Return code: 0
1406s   OKs: 1
1406s   Standard out:
1406s     OK
1407s libtbx.python "/usr/lib/python3/dist-packages/cctbx/multipolar/regression/tst_multipolar.py" [OK] 0.2s
1407s   Time:  0.16
1407s   Return code: 0
1407s   OKs: 3
1407s   Standard out:
1407s     OK
1407s     0
1407s     1
1407s     2
1407s     OK
1407s     Skipping exercise(): chem_data directory not available
1407s     OK
1409s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1409s 139
1409s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1409s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_miller_statistics.py" [FAIL] 5.8s
1409s   Time:  5.78
1409s   Return code: 139
1409s   OKs: 0
1409s   Standard error:
1409s     Segmentation fault (core dumped)
1412s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1412s 139
1412s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1412s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity.py" [FAIL] 5.5s
1412s   Time:  5.52
1412s   Return code: 139
1412s   OKs: 0
1412s   Standard error:
1412s     Segmentation fault (core dumped)
1415s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1415s 139
1415s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1415s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_connectivity_allsym.py" [FAIL] 5.9s
1415s   Time:  5.87
1415s   Return code: 139
1415s   OKs: 0
1415s   Standard error:
1415s     Segmentation fault (core dumped)
1416s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_grm_modifications.py" [OK] 0.7s
1416s   Time:  0.72
1416s   Return code: 0
1416s   OKs: 1
1416s   Standard out:
1416s     Can not initialize monomer_library, skipping test.
1416s     OK
1420s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1420s 1
1420s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1420s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py" [FAIL] 7.6s
1420s   Time:  7.58
1420s   Return code: 1
1420s   OKs: 0
1420s   Standard error:
1420s     Segmentation fault (core dumped)
1420s     Traceback (most recent call last):
1420s       File "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py", line 140, in <module>
1420s         exercise()
1420s         ~~~~~~~~^^
1420s       File "/usr/lib/python3/dist-packages/cctbx/regression/tst_diffuse.py", line 126, in exercise
1420s         assert not easy_run.call(cmd)
1420s                ^^^^^^^^^^^^^^^^^^^^^^
1420s     AssertionError
1422s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_wavelength_units.py" [OK] 2.0s
1422s   Time:  2.02
1422s   Return code: 0
1422s   OKs: 1
1422s   Standard out:
1422s     OK
1422s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1422s 139
1422s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1422s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py" [FAIL] 6.2s
1422s   Time:  6.23
1422s   Return code: 139
1422s   OKs: 0
1422s   Standard error:
1422s     Segmentation fault (core dumped)
1425s   Standard error:
1425s     Segmentation fault (core dumped)
1425s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1425s 139
1425s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1425s libtbx.python "/usr/lib/python3/dist-packages/cctbx/regression/tst_fcalc_fft_stability.py" [EXPECTED UNSTABLE] 3.3s
1425s   Time:  3.32
1425s   Return code: 139
1425s   OKs: 0
1425s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_ext.py" [OK] 0.1s
1425s   Time:  0.10
1425s   Return code: 0
1425s   OKs: 1
1425s   Standard out:
1425s     OK
1425s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_equivalence.py" [OK] 0.1s
1425s   Time:  0.10
1425s   Return code: 0
1425s   OKs: 1
1425s   Standard out:
1425s     OK
1426s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_read.py" [OK] 0.7s
1426s   Time:  0.72
1426s   Return code: 0
1426s   OKs: 1
1426s   Standard out:
1426s     OK
1426s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_cout.py" [OK] 0.5s
1426s   Time:  0.47
1426s   Return code: 0
1426s   OKs: 1
1426s   Standard out:
1426s     OK
1427s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_show_calls.py" [OK] 0.4s
1427s   Time:  0.39
1427s   Return code: 0
1427s   OKs: 1
1427s   Standard out:
1427s     OK
1428s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1428s 139
1428s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1428s libtbx.python "/usr/lib/python3/dist-packages/cma_es/tst_cma_es.py" [FAIL] 5.7s
1428s   Time:  5.67
1428s   Return code: 139
1428s   OKs: 0
1428s   Standard error:
1428s     Segmentation fault (core dumped)
1433s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_command_line.py" [OK] 6.4s
1433s   Time:  6.42
1433s   Return code: 0
1433s   OKs: 1
1433s   Standard out:
1433s     fable.split "/usr/lib/python3/dist-packages/fable/test/valid/subroutine_1.f"
1433s     fable.read --each "/usr/lib/python3/dist-packages/fable/test/valid/write_star.f"
1433s     fable.read --warnings "/usr/lib/python3/dist-packages/fable/test/valid/equivalence_mixed.f"
1433s     fable.show_calls --write-graphviz-dot=tmp.dot --top-procedure=sub "/usr/lib/python3/dist-packages/fable/test/valid/external_arg_layers.f"
1433s     fable.show_calls "/usr/lib/python3/dist-packages/fable/test/valid/dependency_cycle.f"
1433s     fable.fem_include_search_paths --with-quotes
1433s     fable.cout --each "/usr/lib/python3/dist-packages/fable/test/valid/write_star.f"
1433s     fable.cout "/usr/lib/python3/dist-packages/fable/test/valid/common_variants.f"
1433s     fable.cout "/usr/lib/python3/dist-packages/fable/test/valid/subroutine_3.f" --top-procedure=sub3 --fortran-file-comments
1433s     fable.cout --compile "/usr/lib/python3/dist-packages/fable/test/valid/write_star.f"
1433s     fable.cout --namespace=test --run "/usr/lib/python3/dist-packages/fable/test/valid/write_star.f"
1433s     fable.cout --example
1433s     fable.cout /usr/lib/python3/dist-packages/fable/test/valid/sf.f --namespace example --run
1433s     fable.cout "/usr/lib/python3/dist-packages/fable/test/valid/dynamic_parameters_1.f" --dynamic-parameter="int root_size=1"
1433s     OK
1437s libtbx.python "/usr/lib/python3/dist-packages/fable/tst_cout_compile.py" stop [OK] 3.6s
1437s   Time:  3.61
1437s   Return code: 0
1437s   OKs: 1
1437s   Standard out:
1437s     g++ -o "stop_bare_fem" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "stop_bare_fem.cpp"
1437s     g++ -o "stop_integer_fem" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "stop_integer_fem.cpp"
1437s     g++ -o "stop_string_fem" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "stop_string_fem.cpp"
1437s     OK
1437s     usr+sys time: 0.11 seconds
1437s     wall clock time: 3.59 seconds
1439s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_separate_files.py" [OK] 11.8s
1439s   Time: 11.75
1439s   Return code: 0
1439s   OKs: 1
1439s   Standard out:
1439s     g++ -o "top.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.cpp"
1439s     g++ -o "functions.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "functions.cpp"
1439s     g++ -o "tst_separate_files" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.o" "functions.o"
1439s     g++ -o "top.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.cpp"
1439s     g++ -o "subs.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "subs.cpp"
1439s     g++ -o "tst_separate_files" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.o" "subs.o"
1439s     g++ -o "top.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.cpp"
1439s     g++ -o "subs.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "subs.cpp"
1439s     g++ -o "functions.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "functions.cpp"
1439s     g++ -o "tst_separate_files" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.o" "subs.o" "functions.o"
1439s     g++ -o "top.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.cpp"
1439s     g++ -o "subs.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "subs.cpp"
1439s     g++ -o "tst_separate_files" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.o" "subs.o"
1439s     g++ -o "top.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.cpp"
1439s     g++ -o "subs.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "subs.cpp"
1439s     g++ -o "functions.o" -c -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "functions.cpp"
1439s     g++ -o "tst_separate_files" -Wall -Wno-sign-compare -Winvalid-pch -Wno-deprecated-declarations -g -O0 -I"/usr/lib/python3/dist-packages/fable" -I"/usr/lib/python3/dist-packages" "top.o" "subs.o" "functions.o"
1439s     OK
1439s     usr+sys time: 0.23 seconds
1439s     wall clock time: 11.73 seconds
1440s libtbx.python "/usr/lib/python3/dist-packages/gltbx/tst_ellipsoids.py" [OK] 0.3s
1440s   Time:  0.34
1440s   Return code: 0
1440s   OKs: 1
1440s   Standard out:
1440s     OK
1443s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1443s 139
1443s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1443s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mrc_io.py" [FAIL] 3.0s
1443s   Time:  3.04
1443s   Return code: 139
1443s   OKs: 0
1443s   Standard error:
1443s     Segmentation fault (core dumped)
1443s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_wildcard.py" [OK] 0.1s
1443s   Time:  0.08
1443s   Return code: 0
1443s   OKs: 1
1443s   Standard out:
1443s     OK
1445s libtbx.python "/usr/lib/python3/dist-packages/fable/test/tst_io.py" [OK] 8.1s
1445s   Time:  8.06
1445s   Return code: 0
1445s   OKs: 1
1445s   Standard out:
1445s     OK
1445s     usr+sys time: 0.17 seconds
1445s     wall clock time: 8.03 seconds
1445s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_simple_parser.py" [OK] 0.1s
1445s   Time:  0.07
1445s   Return code: 0
1445s   OKs: 1
1445s   Standard out:
1445s     OK
1446s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1446s 139
1446s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1446s libtbx.python "/usr/lib/python3/dist-packages/iotbx/gui_tools/tst.py" [FAIL] 3.3s
1446s   Time:  3.32
1446s   Return code: 139
1446s   OKs: 0
1446s   Standard error:
1446s     Segmentation fault (core dumped)
1446s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_cif_inputs.py" [OK] 0.3s
1446s   Time:  0.28
1446s   Return code: 0
1446s   OKs: 1
1446s   Standard out:
1446s     OK
1449s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1449s 139
1449s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1449s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_phil.py" [FAIL] 3.7s
1449s   Time:  3.65
1449s   Return code: 139
1449s   OKs: 0
1449s   Standard error:
1449s     Segmentation fault (core dumped)
1453s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1453s 139
1453s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1453s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_data_manager.py" [FAIL] 6.4s
1453s   Time:  6.36
1453s   Return code: 139
1453s   OKs: 0
1453s   Standard error:
1453s     Segmentation fault (core dumped)
1456s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1456s 139
1456s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1456s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager_wrapping.py" [FAIL] 7.1s
1456s   Time:  7.08
1456s   Return code: 139
1456s   OKs: 0
1456s   Standard error:
1456s     Segmentation fault (core dumped)
1456s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager.py" [OK] 0.7s
1456s   Time:  0.71
1456s   Return code: 0
1456s   OKs: 1
1456s   Standard out:
1456s     Skip test_01, chem_data not available
1456s     OK
1457s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_2.py" [OK] 0.7s
1457s   Time:  0.74
1457s   Return code: 0
1457s   OKs: 0
1457s   Standard out:
1457s     chem_data is not available, skipping
1458s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_3.py" [OK] 0.7s
1458s   Time:  0.71
1458s   Return code: 0
1458s   OKs: 1
1458s   Standard out:
1458s     Skipped: Requires phenix module
1458s     OK
1458s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_4.py" [OK] 0.2s
1458s   Time:  0.16
1458s   Return code: 0
1458s   OKs: 1
1458s   Standard out:
1458s     Skipping tst_map_model_manager_4 tests becuase Phenix is not available.
1458s     OK
1459s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1459s 139
1459s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1459s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_manager.py" [FAIL] 5.8s
1459s   Time:  5.82
1459s   Return code: 139
1459s   OKs: 0
1459s   Standard error:
1459s     Segmentation fault (core dumped)
1459s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5.py" [OK] 0.7s
1459s   Time:  0.71
1459s   Return code: 0
1459s   OKs: 1
1459s   Standard out:
1459s     Skip test_01, chem_data not available
1459s     OK
1459s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py" [OK] 0.7s
1459s   Time:  0.69
1459s   Return code: 0
1459s   OKs: 1
1459s   Standard out:
1459s     Skip test_01, chem_data not available
1459s     OK
1459s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_call_consistency.py" [OK] 0.7s
1459s   Time:  0.69
1459s   Return code: 0
1459s   OKs: 1
1459s   Standard out:
1459s     
1459s     Expected and actual args in calls for with_bounds
1459s     
1459s     box.with_bounds.__init__ :
1459s     Expected :['log', 'lower_bounds', 'map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'upper_bounds', 'use_cubic_boxing', 'wrapping'] 
1459s     Found   : ['log', 'lower_bounds', 'map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'upper_bounds', 'use_cubic_boxing', 'wrapping']
1459s     
1459s     box_all_maps_with_bounds_and_shift_origin :
1459s     Expected :['extract_box', 'lower_bounds', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'upper_bounds', 'use_cubic_boxing'] 
1459s     Found   : ['boundary_to_smoothing_ratio', 'extract_box', 'lower_bounds', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'upper_bounds', 'use_cubic_boxing']
1459s     
1459s     extract_all_maps_with_bounds :
1459s     Expected :['lower_bounds', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'upper_bounds', 'use_cubic_boxing'] 
1459s     Found   : ['boundary_to_smoothing_ratio', 'lower_bounds', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'upper_bounds', 'use_cubic_boxing']
1459s     
1459s     Expected and actual args in calls for around_model
1459s     
1459s     box.around_model.__init__ :
1459s     Expected :['box_cushion', 'log', 'map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'use_cubic_boxing', 'wrapping'] 
1459s     Found   : ['box_cushion', 'log', 'map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'use_cubic_boxing', 'wrapping']
1459s     
1459s     box_all_maps_around_model_and_shift_origin :
1459s     Expected :['box_cushion', 'extract_box', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'select_unique_by_ncs', 'selection', 'selection_string', 'self', 'stay_inside_current_map', 'use_cubic_boxing'] 
1459s     Found   : ['boundary_to_smoothing_ratio', 'box_cushion', 'extract_box', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'select_unique_by_ncs', 'selection', 'selection_string', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'use_cubic_boxing']
1459s     
1459s     extract_all_maps_around_model :
1459s     Expected :['box_cushion', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'select_unique_by_ncs', 'selection', 'selection_string', 'self', 'stay_inside_current_map', 'use_cubic_boxing'] 
1459s     Found   : ['boundary_to_smoothing_ratio', 'box_cushion', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'select_unique_by_ncs', 'selection', 'selection_string', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'use_cubic_boxing']
1459s     
1459s     Expected and actual args in calls for around_density
1459s     
1459s     box.around_density.__init__ :
1459s     Expected :['box_cushion', 'get_half_height_width', 'log', 'map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'threshold', 'use_cubic_boxing', 'wrapping'] 
1459s     Found   : ['box_cushion', 'get_half_height_width', 'log', 'map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'threshold', 'use_cubic_boxing', 'wrapping']
1459s     
1459s     box_all_maps_around_density_and_shift_origin :
1459s     Expected :['box_cushion', 'extract_box', 'get_half_height_width', 'map_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'threshold', 'use_cubic_boxing'] 
1459s     Found   : ['boundary_to_smoothing_ratio', 'box_cushion', 'extract_box', 'get_half_height_width', 'map_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'threshold', 'use_cubic_boxing']
1459s     
1459s     extract_all_maps_around_density :
1459s     Expected :['box_cushion', 'get_half_height_width', 'map_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'threshold', 'use_cubic_boxing'] 
1459s     Found   : ['boundary_to_smoothing_ratio', 'box_cushion', 'get_half_height_width', 'map_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'threshold', 'use_cubic_boxing']
1459s     
1459s     Expected and actual args in calls for around_mask
1459s     
1459s     box.around_mask.__init__ :
1459s     Expected :['box_cushion', 'log', 'map_manager', 'mask_as_map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'use_cubic_boxing', 'wrapping'] 
1459s     Found   : ['box_cushion', 'log', 'map_manager', 'mask_as_map_manager', 'model', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'use_cubic_boxing', 'wrapping']
1459s     
1459s     box_all_maps_around_mask_and_shift_origin :
1459s     Expected :['box_cushion', 'extract_box', 'mask_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'use_cubic_boxing'] 
1459s     Found   : ['boundary_to_smoothing_ratio', 'box_cushion', 'extract_box', 'mask_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'use_cubic_boxing']
1459s     
1459s     extract_all_maps_around_mask :
1459s     Expected :['box_cushion', 'mask_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'stay_inside_current_map', 'use_cubic_boxing'] 
1459s     Found   : ['boundary_to_smoothing_ratio', 'box_cushion', 'mask_id', 'model_can_be_outside_bounds', 'require_match_unit_cell_crystal_symmetry', 'self', 'soft_mask_around_edges', 'soft_mask_radius', 'stay_inside_current_map', 'use_cubic_boxing']
1459s     
1459s     Expected and actual args in calls for around_unique
1459s     
1459s     box.around_unique.__init__ :
1459s     Expected :['box_cushion', 'chain_type', 'keep_low_density', 'keep_this_region_only', 'log', 'map_manager', 'mask_expand_ratio', 'model', 'molecular_mass', 'regions_to_keep', 'require_match_unit_cell_crystal_symmetry', 'residues_per_region', 'resolution', 'self', 'sequence', 'soft_mask', 'solvent_content', 'stay_inside_current_map', 'symmetry', 'target_ncs_au_model', 'use_cubic_boxing', 'use_symmetry_in_extract_unique', 'wrapping'] 
1459s     Found   : ['box_cushion', 'chain_type', 'keep_low_density', 'keep_this_region_only', 'log', 'map_manager', 'mask_expand_ratio', 'model', 'molecular_mass', 'regions_to_keep', 'require_match_unit_cell_crystal_symmetry', 'residues_per_region', 'resolution', 'self', 'sequence', 'soft_mask', 'solvent_content', 'stay_inside_current_map', 'symmetry', 'target_ncs_au_model', 'use_cubic_boxing', 'use_symmetry_in_extract_unique', 'wrapping']
1459s     
1459s     box_all_maps_around_unique_and_shift_origin :
1459s     Expected :['box_cushion', 'chain_type', 'extract_box', 'keep_low_density', 'keep_this_region_only', 'mask_expand_ratio', 'molecular_mass', 'regions_to_keep', 'require_match_unit_cell_crystal_symmetry', 'residues_per_region', 'resolution', 'self', 'sequence', 'soft_mask', 'solvent_content', 'stay_inside_current_map', 'symmetry', 'target_ncs_au_model', 'use_cubic_boxing', 'use_symmetry_in_extract_unique'] 
1459s     Found   : ['boundary_to_smoothing_ratio', 'box_cushion', 'chain_type', 'extract_box', 'keep_low_density', 'keep_this_region_only', 'mask_expand_ratio', 'molecular_mass', 'regions_to_keep', 'require_match_unit_cell_crystal_symmetry', 'residues_per_region', 'resolution', 'self', 'sequence', 'soft_mask', 'soft_mask_around_edges', 'soft_mask_radius', 'solvent_content', 'stay_inside_current_map', 'symmetry', 'target_ncs_au_model', 'use_cubic_boxing', 'use_symmetry_in_extract_unique']
1459s     
1459s     extract_all_maps_around_unique :
1459s     Expected :['box_cushion', 'chain_type', 'keep_low_density', 'keep_this_region_only', 'mask_expand_ratio', 'molecular_mass', 'regions_to_keep', 'require_match_unit_cell_crystal_symmetry', 'residues_per_region', 'resolution', 'self', 'sequence', 'soft_mask', 'solvent_content', 'stay_inside_current_map', 'symmetry', 'target_ncs_au_model', 'use_cubic_boxing', 'use_symmetry_in_extract_unique'] 
1459s     Found   : ['boundary_to_smoothing_ratio', 'box_cushion', 'chain_type', 'keep_low_density', 'keep_this_region_only', 'mask_expand_ratio', 'molecular_mass', 'regions_to_keep', 'require_match_unit_cell_crystal_symmetry', 'residues_per_region', 'resolution', 'self', 'sequence', 'soft_mask', 'soft_mask_around_edges', 'soft_mask_radius', 'solvent_content', 'stay_inside_current_map', 'symmetry', 'target_ncs_au_model', 'use_cubic_boxing', 'use_symmetry_in_extract_unique']
1459s     
1459s     Expected and actual args in calls for around_atoms
1459s     
1459s     cctbx.maptbx.mask.create_mask_around_atoms.__init__ :
1459s     Expected :['invert_mask', 'map_manager', 'mask_atoms_atom_radius', 'model', 'n_real', 'self', 'wrapping', 'xray_structure'] 
1459s     Found   : ['invert_mask', 'map_manager', 'mask_atoms_atom_radius', 'model', 'n_real', 'self', 'wrapping', 'xray_structure']
1459s     
1459s     map_model_manager.create_mask_around_atoms :
1459s     Expected :['invert_mask', 'mask_atoms_atom_radius', 'mask_id', 'model', 'self', 'soft_mask', 'soft_mask_radius'] 
1459s     Found   : ['invert_mask', 'mask_atoms_atom_radius', 'mask_id', 'model', 'self', 'soft_mask', 'soft_mask_radius']
1459s     
1459s     Expected and actual args in calls for around_edges
1459s     
1459s     cctbx.maptbx.mask.create_mask_around_edges.__init__ :
1459s     Expected :['boundary_radius', 'map_manager', 'self'] 
1459s     Found   : ['boundary_radius', 'map_manager', 'self']
1459s     
1459s     map_model_manager.create_mask_around_edges :
1459s     Expected :['boundary_radius', 'mask_id', 'self'] 
1459s     Found   : ['boundary_radius', 'boundary_to_smoothing_ratio', 'mask_id', 'self', 'soft_mask_radius']
1459s     
1459s     Expected and actual args in calls for around_density
1459s     
1459s     cctbx.maptbx.mask.create_mask_around_density.__init__ :
1459s     Expected :['map_manager', 'molecular_mass', 'resolution', 'self', 'sequence', 'solvent_content'] 
1459s     Found   : ['map_manager', 'molecular_mass', 'resolution', 'self', 'sequence', 'solvent_content']
1459s     
1459s     map_model_manager.create_mask_around_density :
1459s     Expected :['map_id', 'mask_id', 'resolution', 'self', 'soft_mask', 'soft_mask_radius', 'solvent_content'] 
1459s     Found   : ['map_id', 'mask_id', 'resolution', 'self', 'soft_mask', 'soft_mask_radius', 'solvent_content']
1459s     OK
1460s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_external_sharpening_7.py" [OK] 0.7s
1460s   Time:  0.70
1460s   Return code: 0
1460s   OKs: 1
1460s   Standard out:
1460s     Skip test_01, chem_data not available
1460s     OK
1460s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py" [OK] 0.7s
1460s   Time:  0.68
1460s   Return code: 0
1460s   OKs: 1
1460s   Standard out:
1460s     Skip test_01, chem_data not available
1460s     OK
1461s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_tls_from_map_8.py" [OK] 0.7s
1461s   Time:  0.70
1461s   Return code: 0
1461s   OKs: 1
1461s   Standard out:
1461s     Skip test_01, chem_data not available
1461s     OK
1461s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_cif.py" [OK] 0.7s
1461s   Time:  0.69
1461s   Return code: 0
1461s   OKs: 1
1461s   Standard out:
1461s     Skip test_01, chem_data not available
1461s     OK
1465s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1465s 139
1465s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1465s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py" [FAIL] 4.6s
1465s   Time:  4.60
1465s   Return code: 139
1465s   OKs: 0
1465s   Standard error:
1465s     Segmentation fault (core dumped)
1466s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_local_resolution_10.py" [OK] 0.7s
1466s   Time:  0.72
1466s   Return code: 0
1466s   OKs: 1
1466s   Standard out:
1466s     Skip test_01, chem_data not available
1466s     OK
1469s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1469s 139
1469s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1469s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py" [FAIL] 8.4s
1469s   Time:  8.38
1469s   Return code: 139
1469s   OKs: 0
1469s   Standard error:
1469s     Segmentation fault (core dumped)
1469s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_patterson.py" [OK] 0.1s
1469s   Time:  0.07
1469s   Return code: 0
1469s   OKs: 1
1469s   Standard out:
1469s     phenix_regression not available, skipping
1469s     OK
1470s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_restraints_merge.py" [OK] 0.3s
1470s   Time:  0.29
1470s   Return code: 0
1470s   OKs: 0
1472s   Standard error:
1472s     Segmentation fault (core dumped)
1472s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1472s 139
1472s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1472s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_map_tools.py" [FAIL] 6.1s
1472s   Time:  6.12
1472s   Return code: 139
1472s   OKs: 0
1472s libtbx.python "/usr/lib/python3/dist-packages/iotbx/ranges.py" [OK] 0.0s
1472s   Time:  0.03
1472s   Return code: 0
1472s   OKs: 1
1472s   Standard out:
1472s     OK
1475s   Standard error:
1475s     Segmentation fault (core dumped)
1475s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1475s 139
1475s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1475s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_atom_selections_10k.py" [FAIL] 5.4s
1475s   Time:  5.41
1475s   Return code: 139
1475s   OKs: 0
1475s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_poscar.py" [OK] 0.1s
1475s   Time:  0.07
1475s   Return code: 0
1475s   OKs: 1
1475s   Standard out:
1475s     Skipping POSCAR tests: input files not available
1475s     OK
1478s   Standard error:
1478s     Segmentation fault (core dumped)
1478s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1478s 139
1478s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1478s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py" [FAIL] 6.0s
1478s   Time:  5.95
1478s   Return code: 139
1478s   OKs: 0
1481s   Standard error:
1481s     Segmentation fault (core dumped)
1481s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1481s 139
1481s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1481s libtbx.python "/usr/lib/python3/dist-packages/iotbx/kriber/tst_strudat.py" [FAIL] 5.9s
1481s   Time:  5.92
1481s   Return code: 139
1481s   OKs: 0
1484s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1484s 139
1484s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1484s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_geometry.py" [FAIL] 5.8s
1484s   Time:  5.76
1484s   Return code: 139
1484s   OKs: 0
1484s   Standard error:
1484s     Segmentation fault (core dumped)
1487s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1487s 139
1487s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1487s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_lex_parse_build.py" [FAIL] 6.2s
1487s   Time:  6.15
1487s   Return code: 139
1487s   OKs: 0
1487s   Standard error:
1487s     Segmentation fault (core dumped)
1490s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1490s 139
1490s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1490s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_model.py" [FAIL] 6.2s
1490s   Time:  6.18
1490s   Return code: 139
1490s   OKs: 0
1490s   Standard error:
1490s     Segmentation fault (core dumped)
1492s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1492s 1
1492s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1492s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py" [FAIL] 2.3s
1492s   Time:  2.26
1492s   Return code: 1
1492s   OKs: 0
1492s   Standard out:
1492s     Skipping tst_validation.exercise_smart_load() because of URLError.
1492s   Standard error:
1492s     Traceback (most recent call last):
1492s       File "/usr/lib/python3.13/urllib/request.py", line 1541, in ftp_open
1492s         fw = self.connect_ftp(user, passwd, host, port, dirs, req.timeout)
1492s       File "/usr/lib/python3.13/urllib/request.py", line 1561, in connect_ftp
1492s         return ftpwrapper(user, passwd, host, port, dirs, timeout,
1492s                           persistent=False)
1492s       File "/usr/lib/python3.13/urllib/request.py", line 2409, in __init__
1492s         self.init()
1492s         ~~~~~~~~~^^
1492s       File "/usr/lib/python3.13/urllib/request.py", line 2418, in init
1492s         self.ftp.connect(self.host, self.port, self.timeout)
1492s         ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
1492s       File "/usr/lib/python3.13/ftplib.py", line 158, in connect
1492s         self.sock = socket.create_connection((self.host, self.port), self.timeout,
1492s                     ~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
1492s                                              source_address=self.source_address)
1492s                                              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
1492s       File "/usr/lib/python3.13/socket.py", line 864, in create_connection
1492s         raise exceptions[0]
1492s       File "/usr/lib/python3.13/socket.py", line 849, in create_connection
1492s         sock.connect(sa)
1492s         ~~~~~~~~~~~~^^^^
1492s     ConnectionRefusedError: [Errno 111] Connection refused
1492s     
1492s     The above exception was the direct cause of the following exception:
1492s     
1492s     Traceback (most recent call last):
1492s       File "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py", line 327, in <module>
1492s         exercise(sys.argv[1:])
1492s         ~~~~~~~~^^^^^^^^^^^^^^
1492s       File "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py", line 26, in exercise
1492s         exercise_validation()
1492s         ~~~~~~~~~~~~~~~~~~~^^
1492s       File "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_validation.py", line 29, in exercise_validation
1492s         cd = validation.smart_load_dictionary(name="cif_core.dic")
1492s       File "/usr/lib/python3/dist-packages/iotbx/cif/validation.py", line 111, in smart_load_dictionary
1492s         url = locate_dictionary(name, registry_location=registry_location)
1492s       File "/usr/lib/python3/dist-packages/iotbx/cif/validation.py", line 129, in locate_dictionary
1492s         cm = cif.reader(file_object=urlopen(registry_location)).model()
1492s                                     ~~~~~~~^^^^^^^^^^^^^^^^^^^
1492s       File "/usr/lib/python3.13/urllib/request.py", line 189, in urlopen
1492s         return opener.open(url, data, timeout)
1492s                ~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^
1492s       File "/usr/lib/python3.13/urllib/request.py", line 489, in open
1492s         response = self._open(req, data)
1492s       File "/usr/lib/python3.13/urllib/request.py", line 506, in _open
1492s         result = self._call_chain(self.handle_open, protocol, protocol +
1492s                                   '_open', req)
1492s       File "/usr/lib/python3.13/urllib/request.py", line 466, in _call_chain
1492s         result = func(*args)
1492s       File "/usr/lib/python3.13/urllib/request.py", line 1558, in ftp_open
1492s         raise URLError(exp) from exp
1492s     urllib.error.URLError: <urlopen error [Errno 111] Connection refused>
1493s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_parser.py" [OK] 0.2s
1493s   Time:  0.25
1493s   Return code: 0
1493s   OKs: 0
1493s   Standard out:
1493s     1 0 0
1493s     1 0 0
1493s     1 0 0
1493s     1 0 0
1493s     1 0 0
1493s     1 0 0
1493s     1 0 0
1493s     1 0 0
1493s     1 0 0
1493s     0 0 0
1493s     0 0 0
1493s     1 0 0
1493s     0 0 0
1493s     0 0 0
1493s     1 0 0
1493s     1 0 0
1493s     1 0 0
1493s     1 0 0
1493s     1 0 0
1493s     1 0 0
1493s     1 0 0
1493s     1 0 0
1493s     1 0 0
1493s     1 0 0
1493s     1 0 0
1493s     1 0 0
1493s     0 0 0
1493s     1 0 0
1493s     1 0 0
1493s     1 0 0
1493s     1 0 0
1493s     1 0 0
1493s     0 0 0
1493s     0 1 0
1493s     0 1 0
1493s     0 0 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     0 1 0
1493s     1 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s     2 0 0
1493s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_citations.py" [OK] 0.4s
1493s   Time:  0.39
1493s   Return code: 0
1493s   OKs: 1
1493s   Standard out:
1493s     OK
1493s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1493s 139
1493s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1493s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_restraints.py" [FAIL] 5.9s
1493s   Time:  5.90
1493s   Return code: 139
1493s   OKs: 0
1493s   Standard error:
1493s     Segmentation fault (core dumped)
1493s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cif/tests/tst_model_builder.py" [OK] 0.2s
1493s   Time:  0.25
1493s   Return code: 0
1493s   OKs: 0
1497s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1497s 139
1497s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1497s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_lex_parse_build.py" [FAIL] 3.5s
1497s   Time:  3.45
1497s   Return code: 139
1497s   OKs: 0
1497s   Standard error:
1497s     Segmentation fault (core dumped)
1499s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1499s 139
1499s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1499s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_hklf.py" [FAIL] 6.1s
1499s   Time:  6.10
1499s   Return code: 139
1499s   OKs: 0
1499s   Standard error:
1499s     Segmentation fault (core dumped)
1502s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1502s 139
1502s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1502s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_writer.py" [FAIL] 5.7s
1502s   Time:  5.66
1502s   Return code: 139
1502s   OKs: 0
1502s   Standard error:
1502s     Segmentation fault (core dumped)
1505s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1505s 139
1505s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1505s libtbx.python "/usr/lib/python3/dist-packages/iotbx/shelx/tst_fvar_encoding.py" [FAIL] 5.7s
1505s   Time:  5.69
1505s   Return code: 139
1505s   OKs: 0
1505s   Standard error:
1505s     Segmentation fault (core dumped)
1505s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_mmcif.py" [OK] 0.3s
1505s   Time:  0.26
1505s   Return code: 0
1505s   OKs: 1
1505s   Standard out:
1505s     OK
1508s   Standard error:
1508s     *** buffer overflow detected ***: terminated
1508s     Aborted (core dumped)RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1508s 134
1508s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1508s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_pdb.py" [FAIL] 5.9s
1508s   Time:  5.92
1508s   Return code: 134
1508s   OKs: 0
1508s 
1511s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_mmcif_hierarchy_2.py" [OK] 2.6s
1511s   Time:  2.64
1511s   Return code: 0
1511s   OKs: 1
1511s   Standard out:
1511s     OK
1511s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_tls.py" [OK] 0.7s
1511s   Time:  0.68
1511s   Return code: 0
1511s   OKs: 1
1511s   Standard out:
1511s     Skipping exercise_mmcif_tls(): missing phenix_regression directory.
1511s     OK
1512s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/hybrid_36.py" exercise [OK] 0.1s
1512s   Time:  0.12
1512s   Return code: 0
1512s   OKs: 1
1512s   Standard out:
1512s     OK
1512s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1512s 134
1512s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1512s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_mmcif_hierarchy.py" [FAIL] 6.9s
1512s   Time:  6.85
1512s   Return code: 134
1512s   OKs: 0
1512s   Standard error:
1512s     *** buffer overflow detected ***: terminated
1512s     Aborted (core dumped)
1513s "/usr/lib/cctbx/python3.13/iotbx/pdb/hybrid_36_fem" [OK] 1.2s
1513s   Time:  1.22
1513s   Return code: 0
1513s   OKs: 0
1513s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_hierarchy_atom_sort.py" [OK] 0.3s
1513s   Time:  0.34
1513s   Return code: 0
1513s   OKs: 1
1513s   Standard out:
1513s     OK
1513s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric.py" [OK] 0.3s
1513s   Time:  0.25
1513s   Return code: 0
1513s   OKs: 0
1513s   Standard out:
1513s     chem_data is missing, skipping test
1514s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_selected_hierarchy_flip.py" [OK] 0.3s
1514s   Time:  0.28
1514s   Return code: 0
1514s   OKs: 0
1516s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1516s 139
1516s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1516s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_hierarchy.py" [FAIL] 4.0s
1516s   Time:  4.00
1516s   Return code: 139
1516s   OKs: 0
1516s   Standard error:
1516s     Segmentation fault (core dumped)
1519s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1519s 139
1519s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1519s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_ext.py" [FAIL] 5.7s
1519s   Time:  5.66
1519s   Return code: 139
1519s   OKs: 0
1519s   Standard error:
1519s     Segmentation fault (core dumped)
1520s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_rna_dna_atom_names.py" [OK] 0.3s
1520s   Time:  0.26
1520s   Return code: 0
1520s   OKs: 1
1520s   Standard out:
1520s     OK
1520s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_name_interpretation.py" [OK] 0.2s
1520s   Time:  0.24
1520s   Return code: 0
1520s   OKs: 1
1520s   Standard out:
1520s     OK
1520s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py" [OK] 0.2s
1520s   Time:  0.25
1520s   Return code: 0
1520s   OKs: 1
1520s   Standard out:
1520s     OK
1520s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/modified_aa_names.py" [OK] 0.0s
1520s   Time:  0.03
1520s   Return code: 0
1520s   OKs: 0
1520s   Standard out:
1520s     2141
1520s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/modified_rna_dna_names.py" [OK] 0.0s
1520s   Time:  0.02
1520s   Return code: 0
1520s   OKs: 0
1520s   Standard out:
1520s     792
1520s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_sheet.py" [OK] 0.3s
1520s   Time:  0.25
1520s   Return code: 0
1520s   OKs: 1
1520s   Standard out:
1520s     OK
1520s     u+s,u,s: 0.21 0.21 0.00
1522s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1522s 139
1522s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1522s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_selection.py" [FAIL] 6.2s
1522s   Time:  6.21
1522s   Return code: 139
1522s   OKs: 0
1522s   Standard error:
1522s     Segmentation fault (core dumped)
1523s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_annotation_long.py" [OK] 0.3s
1523s   Time:  0.28
1523s   Return code: 0
1523s   OKs: 1
1523s   Standard out:
1523s     OK time =   0.018
1523s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/secondary_structure.py" [OK] 0.3s
1523s   Time:  0.28
1523s   Return code: 0
1523s   OKs: 0
1526s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1526s 139
1526s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1526s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/secondary_structure/tst_annotation.py" [FAIL] 5.4s
1526s   Time:  5.39
1526s   Return code: 139
1526s   OKs: 0
1526s   Standard error:
1526s     Segmentation fault (core dumped)
1527s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_secondary_structure.py" [OK] 0.9s
1527s   Time:  0.86
1527s   Return code: 0
1527s   OKs: 5
1527s   Standard out:
1527s     OK
1527s     OK
1527s     OK
1527s     OK
1527s     OK
1529s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1529s 139
1529s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1529s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_atom_selection_string.py" [FAIL] 6.0s
1529s   Time:  6.03
1529s   Return code: 139
1529s   OKs: 0
1529s   Standard error:
1529s     Segmentation fault (core dumped)
1531s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_secondary_structure_2.py" [OK] 2.2s
1531s   Time:  2.16
1531s   Return code: 0
1531s   OKs: 2
1531s   Standard out:
1531s     OK
1531s     OK
1532s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/remediation/tst_remediator.py" [OK] 0.7s
1532s   Time:  0.73
1532s   Return code: 0
1532s   OKs: 0
1532s   Standard out:
1532s     chem_data is not available for remediator tests, skipping
1532s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1532s 139
1532s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1532s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_utils.py" [FAIL] 5.3s
1532s   Time:  5.26
1532s   Return code: 139
1532s   OKs: 0
1532s   Standard error:
1532s     Segmentation fault (core dumped)
1532s libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/pdb_to_map_simple.py" [OK] 0.2s
1532s   Time:  0.25
1532s   Return code: 0
1532s   OKs: 0
1532s   Standard out:
1532s     Usage: iotbx.python pdb_to_map_simple.py [options] pdb_file...
1532s     
1532s     Options:
1532s       -h, --help     show this help message and exit
1532s       --d_min=FLOAT  high-resolution limit for structure-factor calculation
1532s libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/pdb_tardy_conf_sampling_simple.py" [OK] 0.3s
1532s   Time:  0.26
1532s   Return code: 0
1532s   OKs: 0
1532s   Standard out:
1532s     Time importing extensions: 0.21
1532s     skipping test: phenix_regression not available.
1535s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1535s 134
1535s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1535s libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/pdb_truncate_to_ala/tst.py" [FAIL] 3.3s
1535s   Time:  3.33
1535s   Return code: 134
1535s   OKs: 0
1535s   Standard error:
1535s     *** buffer overflow detected ***: terminated
1535s     Aborted (core dumped)
1539s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1539s 139
1539s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1539s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_examples.py" [FAIL] 6.9s
1539s   Time:  6.92
1539s   Return code: 139
1539s   OKs: 0
1539s   Standard error:
1539s     Segmentation fault (core dumped)
1542s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1542s 139
1542s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1542s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cns/space_group_symbols.py" [FAIL] 6.6s
1542s   Time:  6.63
1542s   Return code: 139
1542s   OKs: 0
1542s   Standard error:
1542s     Segmentation fault (core dumped)
1545s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1545s 139
1545s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1545s libtbx.python "/usr/lib/python3/dist-packages/iotbx/cns/tst_cns.py" [FAIL] 5.5s
1545s   Time:  5.51
1545s   Return code: 139
1545s   OKs: 0
1545s   Standard error:
1545s     Segmentation fault (core dumped)
1548s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1548s 139
1548s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1548s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/tst_merge.py" P31 [FAIL] 5.8s
1548s   Time:  5.80
1548s   Return code: 139
1548s   OKs: 0
1548s   Standard error:
1548s     Segmentation fault (core dumped)
1551s   Standard error:
1551s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1551s 139
1551s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1551s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/no_merge_original_index.py" [FAIL] 5.9s
1551s   Time:  5.89
1551s   Return code: 139
1551s   OKs: 0
1551s     Segmentation fault (core dumped)
1553s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1553s 139
1553s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1553s libtbx.python "/usr/lib/python3/dist-packages/iotbx/ccp4_map/tst.py" [FAIL] 5.7s
1553s   Time:  5.75
1553s   Return code: 139
1553s   OKs: 0
1553s   Standard error:
1553s     Segmentation fault (core dumped)
1557s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1557s 139
1557s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1557s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_ext.py" [FAIL] 6.0s
1557s   Time:  5.98
1557s   Return code: 139
1557s   OKs: 0
1557s   Standard error:
1557s     Segmentation fault (core dumped)
1560s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1560s 139
1560s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1560s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_extract_from_symmetry_lib.py" [FAIL] 6.1s
1560s   Time:  6.12
1560s   Return code: 139
1560s   OKs: 0
1560s   Standard error:
1560s     /usr/lib/python3/dist-packages/ccp4io_adaptbx/__init__.py:25: UserWarning: ccp4io_adaptbx: cannot locate syminfo.lib
1560s       warnings.warn("ccp4io_adaptbx: cannot locate syminfo.lib")
1560s     Segmentation fault (core dumped)
1560s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_miller_dict.py" [OK] 0.3s
1560s   Time:  0.27
1560s   Return code: 0
1560s   OKs: 0
1560s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_unmerged.py" [OK] 0.3s
1560s   Time:  0.25
1560s   Return code: 0
1560s   OKs: 0
1560s   Standard out:
1560s     Title: .
1560s     Space group symbol from file: I23
1560s     Space group number from file: 197
1560s     Space group from matrices: I 2 3 (No. 197)
1560s     Point group symbol from file: PG23
1560s     Number of batches: 45
1560s     Number of crystals: 2
1560s     Number of Miller indices: 13
1560s     Resolution range: 39.0022 31.8451
1560s     History:
1560s       From MTZUTILS 21/11/2017 16:26:11 after history:
1560s       From MOSFLM run on  1/ 7/08
1560s       From MOSFLM run on  1/ 7/08
1560s     Crystal 1:
1560s       Name: HKL_base
1560s       Project: HKL_base
1560s       Id: 1
1560s       Unit cell: (78.0043, 78.0043, 78.0043, 90, 90, 90)
1560s       Number of datasets: 1
1560s       Dataset 1:
1560s         Name: HKL_base
1560s         Id: 0
1560s         Wavelength: 0
1560s         Number of columns: 18
1560s         label        #valid  %valid     min      max type
1560s         H                13 100.00%    0.00     1.00 H: index h,k,l
1560s         K                13 100.00%    2.00     2.00 H: index h,k,l
1560s         L                13 100.00%    0.00     1.00 H: index h,k,l
1560s         M_ISYM           13 100.00%    6.00   272.00 Y: M/ISYM, packed partial/reject flag and symmetry number
1560s         BATCH            13 100.00%   16.00    43.00 B: BATCH number
1560s         I                13 100.00%  -19.71     7.39 J: intensity
1560s         SIGI             13 100.00%    0.41     3.05 Q: standard deviation
1560s         IPR              13 100.00%  -10.84     4.99 J: intensity
1560s         SIGIPR           13 100.00%    0.41     3.05 Q: standard deviation
1560s         FRACTIONCALC     13 100.00%    0.07     1.15 R: real
1560s         XDET             13 100.00% 1099.43  1215.80 R: real
1560s         YDET             13 100.00% 1110.92  1201.06 R: real
1560s         ROT              13 100.00%   15.33    41.55 R: real
1560s         WIDTH            13 100.00%    0.37     2.19 R: real
1560s         LP               13 100.00%    0.00     0.03 R: real
1560s         MPART            13 100.00%    0.00   303.00 I: integer
1560s         FLAG             13 100.00%    0.00    40.00 I: integer
1560s         BGPKRATIOS       13 100.00%    8.04 10610.05 R: real
1560s     Crystal 2:
1560s       Name: DEFAULT
1560s       Project: AUTOMATIC
1560s       Id: 2
1560s       Unit cell: (78.0043, 78.0043, 78.0043, 90, 90, 90)
1560s       Number of datasets: 1
1560s       Dataset 1:
1560s         Name: NATIVE_SWEEP1
1560s         Id: 1
1560s         Wavelength: 0.979
1560s         Number of columns: 0
1560s     asu:        (1, 2, 1)    orig:      (-1, 1, -2)    M/ISYM:  15
1560s     asu:        (1, 2, 1)    orig:       (1, -1, 2)    M/ISYM: 272
1560s     asu:        (1, 2, 1)    orig:       (1, -1, 2)    M/ISYM: 272
1560s     asu:        (1, 2, 1)    orig:       (-1, 2, 1)    M/ISYM:   6
1560s     asu:        (1, 2, 1)    orig:      (1, -2, -1)    M/ISYM: 261
1560s     asu:        (1, 2, 1)    orig:      (-1, 2, -1)    M/ISYM: 263
1560s     asu:        (1, 2, 1)    orig:      (1, -2, -1)    M/ISYM: 261
1560s     asu:        (1, 2, 1)    orig:      (-1, 2, -1)    M/ISYM: 263
1560s     asu:        (1, 2, 1)    orig:       (1, -2, 1)    M/ISYM: 264
1560s     asu:        (1, 2, 1)    orig:       (1, -2, 1)    M/ISYM: 264
1560s     asu:        (0, 2, 0)    orig:       (0, 0, -2)    M/ISYM: 266
1560s     asu:        (0, 2, 0)    orig:       (0, 0, -2)    M/ISYM: 266
1560s     asu:        (0, 2, 0)    orig:       (0, 0, -2)    M/ISYM: 266
1562s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1562s 139
1562s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1562s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst_dano.py" [FAIL] 5.8s
1562s   Time:  5.78
1562s   Return code: 139
1562s   OKs: 0
1562s   Standard error:
1562s     Segmentation fault (core dumped)
1563s libtbx.python "/usr/lib/python3/dist-packages/iotbx/examples/tst_mtz_free_flipper.py" [OK] 0.3s
1563s   Time:  0.27
1563s   Return code: 0
1563s   OKs: 0
1563s   Standard out:
1563s     Skipping exercise(): input file not available
1563s     u+s,u,s: 0.23 0.20 0.03
1565s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1565s 139
1565s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1565s libtbx.python "/usr/lib/python3/dist-packages/iotbx/mtz/tst.py" P31 [FAIL] 5.3s
1565s   Time:  5.26
1565s   Return code: 139
1565s   OKs: 0
1565s   Standard error:
1565s     Segmentation fault (core dumped)
1565s libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_adsc.py" [OK] 0.2s
1565s   Time:  0.20
1565s   Return code: 0
1565s   OKs: 1
1565s   Standard out:
1565s     Skipping exercise_adscread(): input file not available
1565s     OK
1566s libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_detectors.py" [OK] 0.1s
1566s   Time:  0.07
1566s   Return code: 0
1566s   OKs: 0
1566s   Standard out:
1566s     bpcx_regression not configured, skipping test
1568s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1568s 139
1568s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1568s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_utils.py" [FAIL] 5.8s
1568s   Standard error:
1568s     Segmentation fault (core dumped)
1568s   Time:  5.80
1568s   Return code: 139
1568s   OKs: 0
1571s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1571s 139
1571s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1571s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xplor/tst_xplormap.py" [FAIL] 5.7s
1571s   Time:  5.74
1571s   Return code: 139
1571s   OKs: 0
1571s   Standard error:
1571s     Segmentation fault (core dumped)
1571s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdbx_mmcif_tutorial.py" [OK] 0.1s
1571s   Time:  0.07
1571s   Return code: 0
1571s   OKs: 1
1571s   Standard out:
1571s     phenix_regression not configured, skipping tst_pdbx_mmcif_tutorial.py
1571s     OK
1574s   Standard error:
1574s     Segmentation fault (core dumped)
1574s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1574s 139
1574s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1574s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_phases.py" P31 [FAIL] 5.7s
1574s   Time:  5.70
1574s   Return code: 139
1574s   OKs: 0
1579s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1579s 1
1579s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1579s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py" [FAIL] 7.6s
1579s   Time:  7.60
1579s   Return code: 1
1579s   OKs: 0
1579s   Standard error:
1579s     Traceback (most recent call last):
1579s       File "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py", line 477, in <module>
1579s         exercise(sys.argv[1:])
1579s         ~~~~~~~~^^^^^^^^^^^^^^
1579s       File "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py", line 22, in exercise
1579s           run_and_compare(
1579s           ~~~~~~~~~~~~~~~^
1579s             ['iotbx.lattice_symmetry'
1579s             ^^^^^^^^^^^^^^^^^^^^^^^^^
1579s         ...<31 lines>...
1579s         
1579s         
1579s         """)
1579s         ^^^^
1579s       File "/usr/lib/python3/dist-packages/iotbx/regression/tst_lattice_symmetry.py", line 17, in run_and_compare
1579s         command=command).raise_if_errors().stdout_lines
1579s                          ~~~~~~~~~~~~~~~^^
1579s       File "/usr/lib/python3/dist-packages/libtbx/easy_run.py", line 46, in raise_if_errors
1579s         raise Error(msg)
1579s     RuntimeError: child process stderr output:
1579s       command: 'iotbx.lattice_symmetry --unit_cell="12.7923,12.8923,29.4356,102.846,103.846,22.7475"'
1579s       Segmentation fault (core dumped)
1579s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_data_plots.py" [OK] 0.1s
1579s   Time:  0.07
1579s   Return code: 0
1579s   OKs: 1
1579s   Standard out:
1579s     OK
1579s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_csv_utils.py" [OK] 0.2s
1579s   Time:  0.16
1579s   Return code: 0
1579s   OKs: 1
1579s   Standard out:
1579s     OK
1580s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1580s 139
1580s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1580s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_statistics.py" Fdd2 P31m [FAIL] 6.3s
1580s   Standard error:
1580s     Segmentation fault (core dumped)
1580s   Time:  6.31
1580s   Return code: 139
1580s   OKs: 0
1581s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_bioinformatics.py" [OK] 0.1s
1581s   Time:  0.12
1581s   Return code: 0
1581s   OKs: 3
1581s   Standard out:
1581s     Testing guess_chain_types ... OK
1581s     Testing merge_sequences ... OK
1581s     testEquality (__main__.test_sequence.testEquality) ... ok
1581s     testNonEquality (__main__.test_sequence.testNonEquality) ... ok
1581s     testFormat (__main__.test_fasta_sequence.testFormat) ... ok
1581s     testStr (__main__.test_fasta_sequence.testStr) ... ok
1581s     testFormat (__main__.test_pir_sequence.testFormat) ... ok
1581s     testStr (__main__.test_pir_sequence.testStr) ... ok
1581s     testConservationCode (__main__.test_midline.testConservationCode) ... ok
1581s     testMidline (__main__.test_midline.testMidline) ... ok
1581s     test__str__ (__main__.test_alignment.test__str__) ... ok
1581s     test_copy (__main__.test_alignment.test_copy) ... ok
1581s     test_error (__main__.test_alignment.test_error) ... ok
1581s     test_extend (__main__.test_alignment.test_extend) ... ok
1581s     test_identity_count (__main__.test_alignment.test_identity_count) ... ok
1581s     test_identity_fraction (__main__.test_alignment.test_identity_fraction) ... ok
1581s     test_length (__main__.test_alignment.test_length) ... ok
1581s     test_multiplicity (__main__.test_alignment.test_multiplicity) ... ok
1581s     test__str__ (__main__.test_fasta_alignment.test__str__) ... ok
1581s     test_copy (__main__.test_fasta_alignment.test_copy) ... ok
1581s     test_error (__main__.test_fasta_alignment.test_error) ... ok
1581s     test_format (__main__.test_fasta_alignment.test_format) ... ok
1581s     test__str__ (__main__.test_pir_alignment.test__str__) ... ok
1581s     test_copy (__main__.test_pir_alignment.test_copy) ... ok
1581s     test_error (__main__.test_pir_alignment.test_error) ... ok
1581s     test_format (__main__.test_pir_alignment.test_format) ... ok
1581s     test__str__ (__main__.test_clustal_alignment.test__str__) ... ok
1581s     test_copy (__main__.test_clustal_alignment.test_copy) ... ok
1581s     test_format (__main__.test_clustal_alignment.test_format) ... ok
1581s     testFasta (__main__.test_sequence_parse.testFasta) ... ok
1581s     testPir (__main__.test_sequence_parse.testPir) ... ok
1581s     testSequence (__main__.test_sequence_parse.testSequence) ... ok
1581s     testTolerantPir (__main__.test_sequence_parse.testTolerantPir) ... ok
1581s     test_dbfetch_parse (__main__.test_sequence_parse.test_dbfetch_parse) ... ok
1581s     test_filename_selection (__main__.test_sequence_parse.test_filename_selection) ... ok
1581s     test_known_formats (__main__.test_sequence_parse.test_known_formats) ... ok
1581s     test_ls_parse (__main__.test_sequence_parse.test_ls_parse) ... ok
1581s     test_tf_parse (__main__.test_sequence_parse.test_tf_parse) ... ok
1581s     testAli (__main__.test_alignment_parse.testAli) ... ok
1581s     testClustal (__main__.test_alignment_parse.testClustal) ... ok
1581s     testFasta (__main__.test_alignment_parse.testFasta) ... ok
1581s     testPir (__main__.test_alignment_parse.testPir) ... ok
1581s     test_filename_selection (__main__.test_alignment_parse.test_filename_selection) ... ok
1581s     test_known_formats (__main__.test_alignment_parse.test_known_formats) ... ok
1581s     test_process_header (__main__.test_hhsearch_parser.test_process_header) ... ok
1581s     test_process_hits (__main__.test_hhsearch_parser.test_process_hits) ... ok
1581s     test_process_header (__main__.test_hhalign_parser.test_process_header) ... ok
1581s     test_process_hits (__main__.test_hhalign_parser.test_process_hits) ... ok
1581s     
1581s     ----------------------------------------------------------------------
1581s     Ran 46 tests in 0.006s
1581s     
1581s     OK
1583s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1583s 139
1583s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1583s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_file_reader.py" [FAIL] 4.2s
1583s   Standard error:
1583s     Segmentation fault (core dumped)
1583s   Time:  4.21
1583s   Return code: 139
1583s   OKs: 0
1589s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1589s 1
1589s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1589s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py" [FAIL] 8.4s
1589s   Time:  8.40
1589s   Return code: 1
1589s   OKs: 0
1589s   Standard out:
1589s     Starting iotbx.pdb.box_around_molecule
1589s     on Thu Mar 13 14:16:06 2025 by ubuntu
1589s     ===============================================================================
1589s     
1589s   Standard error:
1589s     *** buffer overflow detected ***: terminated
1589s     Aborted (core dumped)
1589s     Traceback (most recent call last):
1589s       File "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py", line 138, in <module>
1589s         exercise()
1589s         ~~~~~~~~^^
1589s       File "/usr/lib/python3/dist-packages/iotbx/regression/tst_box_around_molecule.py", line 48, in exercise
1589s         assert not easy_run.call("iotbx.pdb.box_around_molecule %s.pdb" % (
1589s                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
1589s             prefix))
1589s             ^^^^^^^^
1589s     AssertionError
1589s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_input.py" [OK] 0.3s
1589s   Time:  0.26
1589s   Return code: 0
1589s   OKs: 0
1590s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1590s 134
1590s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1590s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_segids.py" [FAIL] 6.8s
1590s   Time:  6.78
1590s   Return code: 134
1590s   OKs: 0
1590s   Standard error:
1590s     *** buffer overflow detected ***: terminated
1590s     Aborted (core dumped)
1591s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_multimodel.py" [OK] 0.7s
1591s   Time:  0.69
1591s   Return code: 0
1591s   OKs: 0
1591s   Standard out:
1591s     ['_MutableMapping__marker', '__abstractmethods__', '__class__', '__class_getitem__', '__contains__', '__copy__', '__deepcopy__', '__delattr__', '__delitem__', '__dict__', '__dir__', '__doc__', '__eq__', '__firstlineno__', '__format__', '__ge__', '__getattribute__', '__getitem__', '__getstate__', '__gt__', '__hash__', '__init__', '__init_subclass__', '__iter__', '__le__', '__len__', '__lt__', '__module__', '__ne__', '__new__', '__reduce__', '__reduce_ex__', '__repr__', '__reversed__', '__setattr__', '__setitem__', '__sizeof__', '__slots__', '__static_attributes__', '__str__', '__subclasshook__', '__weakref__', '_abc_impl', '_items', '_set', 'add_data_item', 'add_loop', 'clear', 'copy', 'deepcopy', 'difference', 'get', 'get_loop', 'get_loop_or_row', 'get_loop_with_defaults', 'get_looped_item', 'get_single_item', 'item_keys', 'items', 'iterloops', 'keys', 'keys_lower', 'loop_keys', 'loops', 'pop', 'popitem', 'saves', 'setdefault', 'show', 'sort', 'update', 'validate', 'values']
1591s     ['_atom_site.group_PDB', '_atom_site.id', '_atom_site.label_atom_id', '_atom_site.label_alt_id', '_atom_site.label_comp_id', '_atom_site.auth_asym_id', '_atom_site.auth_seq_id', '_atom_site.pdbx_PDB_ins_code', '_atom_site.Cartn_x', '_atom_site.Cartn_y', '_atom_site.Cartn_z', '_atom_site.occupancy', '_atom_site.B_iso_or_equiv', '_atom_site.type_symbol', '_atom_site.pdbx_formal_charge', '_atom_site.label_asym_id', '_atom_site.label_entity_id', '_atom_site.label_seq_id', '_atom_site.pdbx_PDB_model_num', '_chem_comp.id', '_struct_asym.id']
1591s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_add_conformations.py" [OK] 0.2s
1591s   Time:  0.25
1591s   Return code: 0
1591s   OKs: 0
1591s   Standard out:
1591s     phenix_regression not available, skipping test.
1593s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1593s 134
1593s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1593s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py" [FAIL] 3.9s
1593s   Time:  3.90
1593s   Return code: 134
1593s   OKs: 0
1593s   Standard error:
1593s     *** buffer overflow detected ***: terminated
1593s     Aborted (core dumped)
1593s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reindex.py" [OK] 0.1s
1593s   Time:  0.08
1593s   Return code: 0
1593s   OKs: 1
1593s   Standard out:
1593s     Skipping
1593s     OK
1596s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1596s 139
1596s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1596s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_symmetry.py" [FAIL] 4.5s
1596s   Time:  4.51
1596s   Return code: 139
1596s   OKs: 0
1596s   Standard error:
1596s     Segmentation fault (core dumped)
1598s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1598s 139
1598s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1598s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_editor.py" [FAIL] 5.2s
1598s   Time:  5.20
1598s   Return code: 139
1598s   OKs: 0
1598s   Standard error:
1598s     Segmentation fault (core dumped)
1599s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_as_fasta.py" [OK] 0.3s
1599s   Time:  0.27
1599s   Return code: 0
1599s   OKs: 1
1599s   Standard out:
1599s     OK
1599s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_link_records.py" [OK] 0.3s
1599s   Time:  0.29
1599s   Return code: 0
1599s   OKs: 0
1599s   Standard out:
1599s     Can not initialize monomer_library, skipping test.
1599s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_merging_statistics.py" [OK] 0.2s
1599s   Time:  0.19
1599s   Return code: 0
1599s   OKs: 1
1599s   Standard out:
1599s     phenix_regression not configured, skipping.
1599s     OK
1603s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1603s 1
1603s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1603s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_models.py" [FAIL] 7.5s
1603s   Time:  7.54
1603s   Return code: 1
1603s   OKs: 0
1603s   Standard error:
1603s     Traceback (most recent call last):
1603s       File "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_models.py", line 60, in <module>
1603s         exercise()
1603s         ~~~~~~~~^^
1603s       File "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_models.py", line 48, in exercise
1603s         assert (len(out.stdout_lines) == 2) and (len(out.stderr_lines) == 0)
1603s                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
1603s     AssertionError
1604s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1604s 139
1604s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1604s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_simple_map_coefficients.py" [FAIL] 5.0s
1604s   Time:  4.96
1604s   Return code: 139
1604s   OKs: 0
1604s   Standard error:
1604s     Segmentation fault (core dumped)
1604s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_xparm.py" [OK] 0.1s
1604s   Time:  0.08
1604s   Return code: 0
1604s   OKs: 3
1604s   Standard out:
1604s     OK
1604s     OK
1604s     OK
1604s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_xds_inp.py" [OK] 0.1s
1604s   Time:  0.08
1604s   Return code: 0
1604s   OKs: 1
1604s   Standard out:
1604s     OK
1610s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1610s 1
1610s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1610s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_sort_atoms.py" [FAIL] 6.5s
1610s   Time:  6.47
1610s   Return code: 1
1610s   OKs: 0
1610s   Standard out:
1610s     iotbx.pdb.sort_atoms tst_sort_atoms_1.pdb
1610s   Standard error:
1610s     Segmentation fault (core dumped)
1610s     Traceback (most recent call last):
1610s       File "/usr/lib/python3/dist-packages/iotbx/regression/tst_sort_atoms.py", line 815, in <module>
1610s         exercise_1()
1610s         ~~~~~~~~~~^^
1610s       File "/usr/lib/python3/dist-packages/iotbx/regression/tst_sort_atoms.py", line 806, in exercise_1
1610s         assert not easy_run.call(cmd)
1610s                ^^^^^^^^^^^^^^^^^^^^^^
1610s     AssertionError
1610s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_spots_xds.py" [OK] 0.1s
1610s   Time:  0.07
1610s   Return code: 0
1610s   OKs: 1
1610s   Standard out:
1610s     OK
1610s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_pdb_as_cif.py" [OK] 0.4s
1610s   Time:  0.41
1610s   Return code: 0
1610s   OKs: 1
1610s   Standard out:
1610s     Can not initialize monomer_library, skipping tst_pdb_as_cif.
1610s     OK
1611s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1611s 139
1611s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1611s libtbx.python "/usr/lib/python3/dist-packages/iotbx/xds/tests/tst_integrate_hkl.py" [FAIL] 6.9s
1611s   Time:  6.89
1611s   Return code: 139
1611s   OKs: 0
1611s   Standard error:
1611s     Segmentation fault (core dumped)
1614s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1614s 139
1614s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1614s libtbx.python "/usr/lib/python3/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py" [FAIL] 4.0s
1614s   Standard error:
1614s     Segmentation fault (core dumped)
1614s   Time:  3.98
1614s   Return code: 139
1614s   OKs: 0
1617s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1617s 139
1617s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1617s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py" [FAIL] 6.2s
1617s   Standard error:
1617s     Segmentation fault (core dumped)
1617s   Time:  6.20
1617s   Return code: 139
1617s   OKs: 0
1618s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py" [OK] 0.3s
1618s   Time:  0.25
1618s   Return code: 0
1618s   OKs: 0
1618s   Standard out:
1618s     Skipping tests: phenix not found
1618s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py" [OK] 0.7s
1618s   Time:  0.69
1618s   Return code: 0
1618s   OKs: 0
1618s   Standard out:
1618s     chem_data is not available, skipping
1620s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1620s 139
1620s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1620s libtbx.python "/usr/lib/python3/dist-packages/iotbx/dsn6/tst.py" P31 [FAIL] 6.1s
1620s   Time:  6.15
1620s   Return code: 139
1620s   OKs: 0
1620s   Standard error:
1620s     Segmentation fault (core dumped)
1623s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1623s 139
1623s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1623s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py" [FAIL] 5.0s
1623s   Standard error:
1623s     Segmentation fault (core dumped)
1623s   Time:  4.98
1623s   Return code: 139
1623s   OKs: 0
1626s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1626s 139
1626s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1626s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py" [FAIL] 6.1s
1626s   Time:  6.07
1626s   Return code: 139
1626s   OKs: 0
1626s   Standard error:
1626s     Segmentation fault (core dumped)
1629s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1629s 139
1629s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1629s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py" [FAIL] 6.0s
1629s   Standard error:
1629s     Segmentation fault (core dumped)
1629s   Time:  6.00
1629s   Return code: 139
1629s   OKs: 0
1633s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1633s 139
1633s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1633s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py" [FAIL] 6.9s
1633s   Time:  6.95
1633s   Return code: 139
1633s   OKs: 0
1633s   Standard error:
1633s     Segmentation fault (core dumped)
1636s   Standard error:
1636s     Segmentation fault (core dumped)
1636s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1636s 139
1636s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1636s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_input.py" [FAIL] 7.1s
1636s   Time:  7.06
1636s   Return code: 139
1636s   OKs: 0
1640s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1640s 139
1640s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1640s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py" [FAIL] 6.2s
1640s   Time:  6.22
1640s   Return code: 139
1640s   OKs: 0
1640s   Standard error:
1640s     Segmentation fault (core dumped)
1643s   Standard error:
1643s     Segmentation fault (core dumped)
1643s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1643s 139
1643s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1643s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs.py" [FAIL] 6.9s
1643s   Time:  6.94
1643s   Return code: 139
1643s   OKs: 0
1646s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1646s 139
1646s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1646s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py" [FAIL] 7.0s
1646s   Time:  6.96
1646s   Return code: 139
1646s   OKs: 0
1646s   Standard error:
1646s     Segmentation fault (core dumped)
1650s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1650s 139
1650s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1650s libtbx.python "/usr/lib/python3/dist-packages/iotbx/pdb/tst_read_mtrix_records_from_cif.py" [FAIL] 6.9s
1650s   Time:  6.94
1650s   Return code: 139
1650s   OKs: 0
1650s   Standard error:
1650s     Segmentation fault (core dumped)
1653s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1653s 139
1653s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1653s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_show_systematic_absences.py" [FAIL] 7.0s
1653s   Time:  6.97
1653s   Return code: 139
1653s   OKs: 0
1653s   Standard error:
1653s     Segmentation fault (core dumped)
1654s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_reflection_file_reader.py" [OK] 0.4s
1654s   Time:  0.38
1654s   Return code: 0
1654s   OKs: 1
1654s   Standard out:
1654s     OK
1656s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1656s 139
1656s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1656s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_miller_sort_asu.py" [FAIL] 6.1s
1656s   Time:  6.07
1656s   Return code: 139
1656s   OKs: 0
1656s   Standard error:
1656s     Segmentation fault (core dumped)
1656s libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/tst_alignment_as_hsearch.py" [OK] 0.1s
1656s   Time:  0.10
1656s   Return code: 0
1656s   OKs: 0
1657s libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/tst_ebi_wu_blast_xml.py" [OK] 0.1s
1657s   Time:  0.11
1657s   Return code: 0
1657s   OKs: 0
1657s libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/tst_ncbi_blast_xml.py" [OK] 0.1s
1657s   Time:  0.11
1657s   Return code: 0
1657s   OKs: 0
1657s libtbx.python "/usr/lib/python3/dist-packages/iotbx/bioinformatics/pdb_info.py" [OK] 0.8s
1657s   Time:  0.81
1657s   Return code: 0
1657s   OKs: 0
1660s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1660s 134
1660s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1660s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_xray_scale.py" [FAIL] 6.4s
1660s   Time:  6.42
1660s   Return code: 134
1660s   OKs: 0
1660s   Standard error:
1660s     *** buffer overflow detected ***: terminated
1660s     Aborted (core dumped)
1664s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1664s 139
1664s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1664s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cif_as_pdb_1atom.py" [FAIL] 6.5s
1664s   Time:  6.54
1664s   Return code: 139
1664s   OKs: 0
1664s   Standard error:
1664s     Segmentation fault (core dumped)
1668s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1668s 139
1668s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1668s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cif_1.py" [FAIL] 7.6s
1668s   Time:  7.60
1668s   Return code: 139
1668s   OKs: 0
1668s   Standard error:
1668s     Segmentation fault (core dumped)
1673s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1673s 1
1673s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1673s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_data_cif.py" [FAIL] 9.4s
1673s   Time:  9.44
1673s   Return code: 1
1673s   OKs: 0
1673s   Standard error:
1673s     Traceback (most recent call last):
1673s       File "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_data_cif.py", line 395, in <module>
1673s         tst_1()
1673s         ~~~~~^^
1673s       File "/usr/lib/python3/dist-packages/iotbx/regression/tst_split_data_cif.py", line 370, in tst_1
1673s         assert os.path.isfile('%s.cif_%s_000.mtz' % (prefix, bn))
1673s                ~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
1673s     AssertionError
1675s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1675s 134
1675s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1675s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_all_chain_ids.py" [FAIL] 7.7s
1675s   Time:  7.66
1675s   Return code: 134
1675s   OKs: 0
1675s   Standard error:
1675s     *** buffer overflow detected ***: terminated
1675s     Aborted (core dumped)
1679s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1679s 139
1679s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1679s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_extract_xtal_data.py" [FAIL] 5.2s
1679s   Time:  5.24
1679s   Return code: 139
1679s   OKs: 0
1679s   Standard error:
1679s     Segmentation fault (core dumped)
1679s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mtz_as_cif.py" [OK] 0.4s
1679s   Time:  0.37
1679s   Return code: 0
1679s   OKs: 1
1679s   Standard out:
1679s     Skipping 1akg.mtz test: input file not available
1679s     Skipping 1zff.mtz test: input file not available
1679s     Skipping l.mtz test: input file not available
1679s     Skipping outside_4_exptl_fobs_phases_freeR_flags.mtz test: input file not available
1679s     Skipping r1wqzsf.mtz test: input file not available
1679s     Skipping ur0013.sf.mtz test: input file not available
1679s     Skipping 1aba_test.mtz test: input file not available
1679s     OK
1679s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_group_rounding.py" [OK] 0.3s
1679s   Time:  0.25
1679s   Return code: 0
1679s   OKs: 0
1683s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1683s 139
1683s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1683s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_cli_parser.py" [FAIL] 7.2s
1683s   Time:  7.16
1683s   Return code: 139
1683s   OKs: 0
1683s   Standard error:
1683s     Segmentation fault (core dumped)
1683s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py" [OK] 0.3s
1683s   Time:  0.25
1683s   Return code: 0
1683s   OKs: 1
1683s   Standard out:
1683s     [('1', 22), ('3', 17), ('1', 1), ('3', 1)]
1683s     [('1', 22), ('3', 18), ('1', 1)]
1683s     OK
1684s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_chain_ids_1.py" [OK] 1.2s
1684s   Time:  1.23
1684s   Return code: 0
1684s   OKs: 1
1684s   Standard out:
1684s     
1684s     total number of:
1684s       models:       1
1684s       chains:       3
1684s       alt. conf.:   0
1684s       residues:    12
1684s       atoms:      174
1684s       anisou:       0
1684s     number of atom element+charge types: 4
1684s     histogram of atom element+charge frequency:
1684s       " H  " 78
1684s       " C  " 60
1684s       " O  " 21
1684s       " N  " 15
1684s     residue name classes:
1684s       "common_amino_acid" 12
1684s     number of chain ids: 3
1684s     histogram of chain id frequency:
1684s       "A"   1
1684s       "A-2" 1
1684s       "A-5" 1
1684s     number of alt. conf. ids: 0
1684s     number of residue names: 4
1684s     histogram of residue name frequency:
1684s       "ASN" 3
1684s       "PHE" 3
1684s       "SER" 3
1684s       "THR" 3
1684s     Can not initialize monomer_library, skipping test.
1684s     OK. Time:    0.553
1685s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_1.py" [OK] 0.7s
1685s   Time:  0.73
1685s   Return code: 0
1685s   OKs: 1
1685s   Standard out:
1685s     OK. Time:    0.484
1686s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1686s 134
1686s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1686s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_occupancies_rounding.py" [FAIL] 6.2s
1686s   Time:  6.20
1686s   Return code: 134
1686s   OKs: 0
1686s   Standard error:
1686s     *** buffer overflow detected ***: terminated
1686s     Aborted (core dumped)
1686s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_2.py" [OK] 0.7s
1686s   Time:  0.69
1686s   Return code: 0
1686s   OKs: 1
1686s   Standard out:
1686s     Can not initialize monomer_library, skipping test.
1686s     OK. Time:    0.017
1686s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_3.py" [OK] 0.7s
1686s   Time:  0.70
1686s   Return code: 0
1686s   OKs: 1
1686s   Standard out:
1686s     Can not initialize monomer_library, skipping test.
1686s     OK. Time:    0.017
1686s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_long_resname_4.py" [OK] 0.7s
1686s   Time:  0.69
1686s   Return code: 0
1686s   OKs: 1
1686s   Standard out:
1686s     Can not initialize monomer_library, skipping test.
1686s     OK. Time:    0.017
1687s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_id_str.py" [OK] 0.3s
1687s   Time:  0.25
1687s   Return code: 0
1687s   OKs: 0
1687s   Standard out:
1687s     u+s,u,s: 0.21 0.20 0.01
1687s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_copy_select.py" [OK] 0.3s
1687s   Time:  0.28
1687s   Return code: 0
1687s   OKs: 1
1687s   Standard out:
1687s     There is no info: pdb=" N             "
1687s     And no parent: None
1687s     Info is gone: pdb=" N             "
1687s     Info is still here: pdb=" N   GLY A   1 "
1687s     OK. Time:    0.031
1687s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_hierarchy_altlocs.py" [OK] 0.2s
1687s   Time:  0.25
1687s   Return code: 0
1687s   OKs: 1
1687s   Standard out:
1687s     OK
1689s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1689s 139
1689s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1689s libtbx.python "/usr/lib/python3/dist-packages/iotbx/detectors/tst_debug_write.py" [FAIL] 2.7s
1689s   Time:  2.72
1689s   Return code: 139
1689s   OKs: 0
1689s   Standard error:
1689s     Segmentation fault (core dumped)
1693s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1693s 139
1693s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1693s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/ncs/tst_ncs_reordered_chains.py" [EXPECTED FAIL] 3.4s
1693s   Time:  3.38
1693s   Return code: 139
1693s   OKs: 0
1693s   Standard error:
1693s     Segmentation fault (core dumped)
1697s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1697s 134
1697s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1697s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_mmcif_to_from_hierarchy.py" [EXPECTED FAIL] 4.3s
1697s   Time:  4.35
1697s   Return code: 134
1697s   OKs: 0
1697s   Standard error:
1697s     *** buffer overflow detected ***: terminated
1697s     Aborted (core dumped)
1697s libtbx.python "/usr/lib/python3/dist-packages/libtbx/metric_prefixes.py" [OK] 0.0s
1697s   Time:  0.02
1697s   Return code: 0
1697s   OKs: 1
1697s   Standard out:
1697s     OK
1701s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_utils.py" [OK] 4.3s
1701s   Time:  4.26
1701s   Return code: 0
1701s   OKs: 0
1701s   Standard out:
1701s     Skipping exercise_retrieve_unless_exists
1701s     ### USER = ubuntu
1701s     ### PID = 10925
1701s     multiprocessing problem: None
1701s     base36_timestamp(): 00m87foshd now
1701s     base36_timestamp(): zzydazd000 year 115855 CE
1701s     get_svn_revision(): None
1701s     get_build_tag(): None
1701s     u+s,u,s: 0.09 0.08 0.01
1702s libtbx.python "/usr/lib/python3/dist-packages/libtbx/test_utils/__init__.py" [OK] 0.7s
1702s   Time:  0.72
1702s   Return code: 0
1702s   OKs: 1
1702s   Standard out:
1702s     OK
1702s libtbx.python "/usr/lib/python3/dist-packages/libtbx/queuing_system_utils/pbs_utils.py" [OK] 0.0s
1702s   Time:  0.03
1702s   Return code: 0
1702s   OKs: 1
1702s   Standard out:
1702s     *** MY_PBS_ARRAY_SIZE = None
1702s     *** MY_PBS_ARRAYID_OFFSET = None
1702s     *** PBS_ARRAYID = None
1702s     *** OMPI_MCA_ns_nds_num_procs = None
1702s     *** OMPI_MCA_ns_nds_vpid = None
1702s     n,i: 1 0
1702s     OK
1702s libtbx.python "/usr/lib/python3/dist-packages/libtbx/queuing_system_utils/sge_utils.py" [OK] 0.0s
1702s   Time:  0.03
1702s   Return code: 0
1702s   OKs: 1
1702s   Standard out:
1702s     *** JOB_ID = None
1702s     *** SGE_ARCH = None
1702s     *** SGE_TASK_FIRST = None
1702s     *** SGE_TASK_LAST = None
1702s     *** SGE_TASK_ID = None
1702s     OK
1702s libtbx.python "/usr/lib/python3/dist-packages/libtbx/introspection.py" [OK] 0.0s
1702s   Time:  0.05
1702s   Return code: 0
1702s   OKs: 1
1702s   Standard out:
1702s     number of processors: 2
1702s     Virtual memory size: 25,296,896
1702s     Resident set size:   12,582,912
1702s     Stack size:             196,608
1702s     Virtual memory size: 25,296,896     exact max: 33,357,824
1702s     Resident set size:   15,859,712   approx. max: 20,971,520
1702s     Stack size:             196,608   approx. max:    196,608
1702s     Memory total:  4,208,918,528
1702s     Memory free:     103,481,344
1702s     OK
1725s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_thread_utils.py" [OK] 22.9s
1725s   Time: 22.90
1725s   Return code: 0
1725s   OKs: 1
1725s   Standard out:
1725s     OK
1727s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp.py" [OK] 2.1s
1727s   Time:  2.12
1727s   Return code: 0
1727s   OKs: 1
1727s   Standard out:
1727s     multiprocessing pool size: 2
1727s     wall clock time: 0.01 seconds
1727s     OK
1728s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp_state.py" [OK] 0.7s
1728s   Time:  0.69
1728s   Return code: 0
1728s   OKs: 3
1728s   Standard out:
1728s     Running threading test with 1 processes, 1 threads, 3 tasks
1728s     (0x7f31b17a6ba0-12130) object in state -init-
1728s     (0x7f31b17a6ba0-12130) changing state from -init- to 0CJPJ5
1728s     (0x7f31b17a6ba0-12130) changing state from 0CJPJ5 to SLFVHU
1728s     (0x7f31b17a6ba0-12130) changing state from SLFVHU to 1UU946
1728s     (0x7f31b17a6ba0-12130) object in state 1UU946
1728s     OK
1728s     Running threading test with 2 processes, 1 threads, 3 tasks
1728s     (0x7f31b168dd10-12130) object in state -init-
1728s     (0x7f31b168dd10-12130) changing state from -init- to SVBDS3
1728s     (0x7f31b168dd10-12130) changing state from SVBDS3 to 56GZZD
1728s     (0x7f31b168dd10-12130) changing state from 56GZZD to 92PDUD
1728s     (0x7f31b168dd10-12130) object in state 92PDUD
1728s     OK
1728s     Running multiprocessing test with 1 processes, 1 threads, 3 tasks
1728s     (0x7f31b168dd10-12130) object in state -init-
1728s     (0x7f31b168dd10-12130) changing state from -init- to KZIPQM
1728s     (0x7f31b168dd10-12130) changing state from KZIPQM to 2RUOUB
1728s     (0x7f31b168dd10-12130) changing state from 2RUOUB to 5P84U0
1728s     (0x7f31b168dd10-12130) object in state 5P84U0
1728s     OK
1728s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_pickle.py" [OK] 0.1s
1728s   Time:  0.06
1728s   Return code: 0
1728s   OKs: 1
1728s   Standard out:
1728s     test.dat
1728s       dump: 0.00 s
1728s       load buffered: 0.00 s
1728s       load direct: 0.00 s
1728s     test.dat.gz
1728s       dump: 0.00 s
1728s       load buffered: 0.00 s
1728s       load direct: 0.00 s
1728s     dumps/loads
1728s       dump: 0.00 s
1728s       load buffered: 0.00 s
1728s     OK
1728s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_fully_buffered_timeout.py" [OK] 0.1s
1728s   Time:  0.08
1728s   Return code: 0
1728s   OKs: 0
1728s   Standard out:
1728s     Skipping test: probe not configured
1735s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_scheduling.py" [OK] 6.8s
1735s   Time:  6.77
1735s   Return code: 0
1735s   OKs: 0
1736s libtbx.python "/usr/lib/python3/dist-packages/libtbx/easy_run.py" [OK] 1.4s
1736s   Time:  1.38
1736s   Return code: 0
1736s   OKs: 1
1736s   Standard out:
1736s     OK
1736s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_containers.py" [OK] 0.0s
1736s   Time:  0.03
1736s   Return code: 0
1736s   OKs: 1
1736s   Standard out:
1736s     OK
1736s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_path.py" [OK] 0.1s
1736s   Time:  0.05
1736s   Return code: 0
1736s   OKs: 1
1736s   Standard out:
1736s     OK
1737s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_math_utils.py" [OK] 0.3s
1737s   Time:  0.31
1737s   Return code: 0
1737s   OKs: 1
1737s   Standard out:
1737s     OK
1737s libtbx.python "/usr/lib/python3/dist-packages/libtbx/assert_utils.py" [OK] 0.1s
1737s   Time:  0.13
1737s   Return code: 0
1737s   OKs: 1
1737s   Standard out:
1737s     OK
1737s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_str_utils.py" [OK] 0.3s
1737s   Time:  0.34
1737s   Return code: 0
1737s   OKs: 1
1737s   Standard out:
1737s     OK
1737s libtbx.python "/usr/lib/python3/dist-packages/libtbx/table_utils.py" [OK] 0.0s
1737s   Time:  0.03
1737s   Return code: 0
1737s   OKs: 1
1737s   Standard out:
1737s     OK
1739s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_dlite.py" [OK] 2.1s
1739s   Time:  2.06
1739s   Return code: 0
1739s   OKs: 1
1739s   Standard out:
1739s     OK
1739s libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_tokenizer.py" [OK] 0.1s
1739s   Time:  0.05
1739s   Return code: 0
1739s   OKs: 1
1739s   Standard out:
1739s     OK
1740s libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst.py" [OK] 0.3s
1740s   Time:  0.26
1740s   Return code: 0
1740s   OKs: 1
1740s   Standard out:
1740s     OK
1740s libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_experimental.py" [OK] 0.1s
1740s   Time:  0.06
1740s   Return code: 0
1740s   OKs: 1
1740s   Standard out:
1740s     OK
1740s libtbx.python "/usr/lib/python3/dist-packages/libtbx/phil/tst_interface.py" [OK] 0.1s
1740s   Time:  0.10
1740s   Return code: 0
1740s   OKs: 1
1740s   Standard out:
1740s     phenix module not available: skipping advanced tests
1740s     phaser module not available: skipping advanced tests
1740s     OK
1740s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_object_oriented_patterns.py" [OK] 0.1s
1740s   Time:  0.07
1740s   Return code: 0
1740s   OKs: 0
1740s libtbx.python "/usr/lib/python3/dist-packages/libtbx/find_reference_cycles.py" [OK] 0.0s
1740s   Time:  0.04
1740s   Return code: 0
1740s   OKs: 1
1740s   Standard out:
1740s     OK
1740s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_binary_search.py" [OK] 0.0s
1740s   Time:  0.03
1740s   Return code: 0
1740s   OKs: 1
1740s   Standard out:
1740s     OK
1740s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_topological_sort.py" [OK] 0.0s
1740s   Time:  0.03
1740s   Return code: 0
1740s   OKs: 1
1740s   Standard out:
1740s     OK
1740s libtbx.python "/usr/lib/python3/dist-packages/libtbx/clusterTests.py" [OK] 0.2s
1740s   Time:  0.20
1740s   Return code: 0
1740s   OKs: 1
1740s   Standard out:
1740s     ----------------------------------------------------------------------
1740s     Ran 13 tests in 0.142s
1740s     
1740s     OK
1740s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_citations.py" [OK] 0.2s
1740s   Time:  0.20
1740s   Return code: 0
1740s   OKs: 1
1740s   Standard out:
1740s     OK
1740s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_python_code_parsing.py" [OK] 0.0s
1740s   Time:  0.04
1740s   Return code: 0
1740s   OKs: 1
1740s   Standard out:
1740s     OK
1740s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_representation.py" [OK] 0.0s
1740s   Time:  0.03
1740s   Return code: 0
1740s   OKs: 0
1740s   Standard out:
1740s     99999999999999950039963891867
1740s     99999999999999963917751699682
1740s     99999999999999977795539507496
1740s     99999999999999991673327315311
1740s     100000000000000005551115123125
1740s     100000000000000019428902930940
1740s     100000000000000033306690738754
1740s     100000000000000047184478546569
1740s     100000000000000061062266354383
1740s     100000000000000074940054162198
1740s     100000000000000088817841970012
1740s     100000000000000102695629777826
1740s     100000000000000116573417585641
1740s     100000000000000130451205393455
1740s     100000000000000144328993201270
1740s     100000000000000158206781009084
1740s     100000000000000172084568816899
1740s     100000000000000185962356624713
1740s     100000000000000199840144432528
1740s     100000000000000213717932240342
1740s     100000000000000227595720048157
1740s     100000000000000241473507855971
1740s     100000000000000255351295663786
1740s     100000000000000269229083471600
1740s     100000000000000283106871279414
1740s     100000000000000296984659087229
1740s     100000000000000310862446895043
1740s     100000000000000324740234702858
1740s     100000000000000338618022510672
1740s     100000000000000352495810318487
1740s     BEst 450359962737049.6
1740s          900719925474099.2
1740s     55.32192809488736
1740s     56.32192809488736
1740s     True
1740s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_find_unused_imports.py" [OK] 0.0s
1740s   Time:  0.03
1740s   Return code: 0
1740s   OKs: 1
1740s   Standard out:
1740s     OK
1741s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_program_template.py" [OK] 0.3s
1741s   Time:  0.30
1741s   Return code: 0
1741s   OKs: 0
1741s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_version.py" [OK] 0.1s
1741s   Time:  0.06
1741s   Return code: 0
1741s   OKs: 0
1741s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_easy_mp_multicore.py" [OK] 0.3s
1741s   Time:  0.30
1741s   Return code: 0
1741s   OKs: 0
1741s   Standard out:
1741s     [1] 1
1741s     [2] 2
1741s     [3] 6
1741s     [4] 24
1741s     [5] 120
1741s     [6] 720
1741s     [7] 5040
1747s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_runtime_utils.py" [OK] 6.0s
1747s   Time:  5.96
1747s   Return code: 0
1747s   OKs: 1
1747s   Standard out:
1747s     OK
1749s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1749s 1
1749s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1749s libtbx.python "/usr/lib/python3/dist-packages/libtbx/tst_xmlrpc_utils.py" [EXPECTED FAIL] 1.9s
1749s   Time:  1.86
1749s   Return code: 1
1749s   OKs: 0
1749s   Standard error:
1749s     Traceback (most recent call last):
1749s       File "/usr/lib/python3/dist-packages/libtbx/tst_xmlrpc_utils.py", line 42, in <module>
1749s         exercise()
1749s         ~~~~~~~~^^
1749s       File "/usr/lib/python3/dist-packages/libtbx/tst_xmlrpc_utils.py", line 15, in exercise
1749s         server = xmlrpc_utils.external_program_server(command=full_cmd,
1749s                                                       program_id="TEST",
1749s                                                       timeout=None,
1749s                                                       cache_requests=True,
1749s                                                       log=log)
1749s     TypeError: external_program_server.__init__() got an unexpected keyword argument 'command'
1750s libtbx.python "/usr/lib/python3/dist-packages/iotbx/regression/tst_fetch.py" [OK] 63.3s
1750s   Time: 63.28
1750s   Return code: 0
1750s   OKs: 1
1750s   Standard out:
1750s     data_r1yjpsf
1750s     # 
1750s     loop_
1750s     _audit.revision_id 
1750s     _audit.creation_date 
1750s     _audit.update_record 
1750s     1_0 2005-06-14 'Initial release'                              
1750s     1_1 2013-05-08 'Status correction and format standardization' 
1750s     # 
1750s     _cell.entry_id      1yjp 
1750s     _cell.length_a      21.937 
1750s     _cell.length_b      4.866 
1750s     _cell.length_c      23.477 
1750s     _cell.angle_alpha   90.000 
1750s     _cell.angle_beta    107.080 
1750s     _cell.angle_gamma   90.000 
1750s     # 
1750s     _diffrn_radiation_wavelength.id           1 
1750s     _diffrn_radiation_wavelength.wavelength   0.97500 
1750s     # 
1750s     _entry.id   1yjp 
1750s     # 
1750s     _exptl_crystal.id   1 
1750s     # 
1750s     _reflns_scale.group_code   1 
1750s     # 
1750s     _symmetry.entry_id               1yjp 
1750s     _symmetry.space_group_name_H-M   'P 1 21 1' 
1750s     # 
1750s     #
1750s     loop_
1750s     _refln.crystal_id
1750s     _refln.wavelength_id
1750s     _refln.scale_group_code
1750s     _refln.index_h
1750s     _refln.index_k
1750s     _refln.index_l
1750s     _refln.status
1750s     _refln.F_meas_au
1750s     _refln.F_meas_sigma_au
1750s     1 1 1  -12    0    2 o     3.49   2.34 
1750s     1 1 1  -12    0    3 o     3.31   2.43 
1750s     1 1 1  -12    0    4 o     7.32   4.25 
1750s     1 1 1  -12    0    5 o     8.88   5.39 
1750s     1 1 1  -11    0    1 o     9.46   4.13 
1750s     1 1 1  -11    0    2 o     4.91   3.21 
1750s     1 1 1  -11    0    3 o     6.37   3.70 
1750s     1 1 1  -11    0    4 o     8.50   4.91 
1750s     1 1 1  -11    0    5 o    17.44   8.06 
1750s     1 1 1  -11    0    6 o     5.89   3.64 
1750s     1 1 1  -11    0    8 o     6.39   3.90 
1750s     1 1 1  -11    1    2 o     5.69   2.18 
1750s     1 1 1  -11    1    3 o     6.53   2.53 
1750s     1 1 1  -11    1    5 o     7.26   3.20 
1750s     1 1 1  -11    1    6 o    11.05   3.47 
1750s     1 1 1  -10    0    2 o     6.32   3.74 
1750s     1 1 1  -10    0    3 o     9.36   4.67 
1750s     1 1 1  -10    0    5 o     7.20   4.12 
1750s     1 1 1  -10    0    6 o     4.88   3.25 
1750s     1 1 1  -10    0    7 o    11.84   5.41 
1750s     1 1 1  -10    0    8 o    14.49   6.53 
1750s     1 1 1  -10    0    9 o     6.21   3.91 
1750s     1 1 1  -10    0   10 o     5.55   3.37 
1750s     1 1 1  -10    1    1 o     4.58   1.49 
1750s     1 1 1  -10    1    3 o    12.40   3.65 
1750s     1 1 1  -10    1    4 o     9.07   2.47 
1750s     1 1 1  -10    1    5 o    17.23   6.02 
1750s     1 1 1  -10    1    6 o     4.60   2.10 
1750s     1 1 1  -10    1    7 o     6.34   2.43 
1750s     1 1 1  -10    1    8 o     9.04   2.92 
1750s     1 1 1   -9    0    2 o     8.10   3.98 
1750s     1 1 1   -9    0    3 o    14.22   5.11 
1750s     1 1 1   -9    0    5 o     6.01   3.78 
1750s     1 1 1   -9    0    6 o    10.48   4.68 
1750s     1 1 1   -9    0    7 o     8.79   4.52 
1750s     1 1 1   -9    0    8 o     6.15   3.63 
1750s     1 1 1   -9    0    9 o    10.27   4.16 
1750s     1 1 1   -9    0   10 o     4.38   3.04 
1750s     1 1 1   -9    0   11 o     7.27   4.16 
1750s     1 1 1   -9    1    3 o    10.75   2.38 
1750s     1 1 1   -9    1    4 o    11.86   1.95 
1750s     1 1 1   -9    1    5 o    10.95   3.27 
1750s     1 1 1   -9    1    6 o    13.31   2.59 
1750s     1 1 1   -9    1    7 o     8.06   2.92 
1750s     1 1 1   -9    1    8 o    14.75   2.87 
1750s     1 1 1   -9    1    9 o     9.04   2.82 
1750s     1 1 1   -8    0    2 f    15.88   3.97 
1750s     1 1 1   -8    0    3 o    26.78   5.79 
1750s     1 1 1   -8    0    5 o    32.83   7.52 
1750s     1 1 1   -8    0    7 o    12.74   3.54 
1750s     1 1 1   -8    0    8 o    29.46   9.29 
1750s     1 1 1   -8    0    9 f    22.09   3.59 
1750s     1 1 1   -8    0   10 o    18.81   5.24 
1750s     1 1 1   -8    0   11 o    12.76   7.11 
1750s     1 1 1   -8    1    1 o     6.26   2.08 
1750s     1 1 1   -8    1    2 o     6.97   2.14 
1750s     1 1 1   -8    1    4 o    19.24   4.18 
1750s     1 1 1   -8    1    5 o    15.46   2.43 
1750s     1 1 1   -8    1    6 o    16.87   2.78 
1750s     1 1 1   -8    1    7 o    15.66   2.34 
1750s     1 1 1   -8    1    8 o     7.07   2.43 
1750s     1 1 1   -8    1    9 o     8.81   2.80 
1750s     1 1 1   -8    1   10 o     8.61   3.09 
1750s     1 1 1   -8    2    1 o     4.39   1.52 
1750s     1 1 1   -8    2    2 o     4.20   1.87 
1750s     1 1 1   -8    2    3 o     6.14   1.87 
1750s     1 1 1   -8    2    4 o     9.38   2.80 
1750s     1 1 1   -7    0    3 o    23.46   3.83 
1750s     1 1 1   -7    0    4 o    37.35   7.40 
1750s     1 1 1   -7    0    6 o     7.44   3.60 
1750s     1 1 1   -7    0    7 o    43.94   5.36 
1750s     1 1 1   -7    0    8 o    18.96   2.98 
1750s     1 1 1   -7    0    9 o     4.95   3.22 
1750s     1 1 1   -7    0   10 o    31.73   4.61 
1750s     1 1 1   -7    0   11 o     6.31   3.82 
1750s     1 1 1   -7    0   12 o     5.05   3.33 
1750s     1 1 1   -7    1    1 o     8.89   1.60 
1750s     1 1 1   -7    1    2 o    13.70   1.71 
1750s     1 1 1   -7    1    3 o    21.03   2.45 
1750s     1 1 1   -7    1    4 f     7.57   2.36 
1750s     1 1 1   -7    1    5 o    11.31   3.34 
1750s     1 1 1   -7    1    6 o    19.93   3.06 
1750s     1 1 1   -7    1    7 o    22.86   3.28 
1750s     1 1 1   -7    1    8 o    10.32   2.58 
1750s     1 1 1   -7    1    9 f     5.13   2.34 
1750s     1 1 1   -7    1   10 o     9.91   3.03 
1750s     1 1 1   -7    1   11 o     5.61   2.33 
1750s     1 1 1   -7    2    1 o    12.28   3.86 
1750s     1 1 1   -7    2    2 o    11.29   3.50 
1750s     1 1 1   -7    2    3 f     7.22   2.40 
1750s     1 1 1   -7    2    4 o    11.13   2.74 
1750s     1 1 1   -7    2    5 o     7.86   2.92 
1750s     1 1 1   -7    2    6 o     5.23   2.15 
1750s     1 1 1   -6    0    2 o    35.03   5.13 
1750s     1 1 1   -6    0    3 o    15.64   3.61 
1750s     1 1 1   -6    0    4 o    12.60   4.22 
1750s     1 1 1   -6    0    5 o    21.36   2.47 
1750s     1 1 1   -6    0    6 o    31.19   3.17 
1750s     1 1 1   -6    0    7 o    33.66   3.99 
1750s     1 1 1   -6    0    8 o    13.70   4.22 
1750s     1 1 1   -6    0    9 o    10.99   4.16 
1750s     1 1 1   -6    0   10 o    24.56   3.98 
1750s     1 1 1   -6    0   11 o     4.41   3.08 
1750s     1 1 1   -6    0   12 o     4.07   2.83 
1750s     1 1 1   -6    1    1 o    10.24   1.40 
1750s     1 1 1   -6    1    2 o    20.59   2.28 
1750s     1 1 1   -6    1    3 o    32.14   3.57 
1750s     1 1 1   -6    1    4 f    11.60   2.18 
1750s     1 1 1   -6    1    5 o    22.15   2.66 
1750s     1 1 1   -6    1    6 o     7.68   2.64 
1750s     1 1 1   -6    1    7 o     6.39   2.58 
1750s     1 1 1   -6    1    8 o     6.60   2.60 
1750s     1 1 1   -6    1    9 o     8.21   2.82 
1750s     1 1 1   -6    1   10 o    13.25   3.07 
1750s     1 1 1   -6    1   11 o    10.62   3.80 
1750s     1 1 1   -6    2    1 o    13.78   2.98 
1750s     1 1 1   -6    2    2 o     5.95   2.11 
1750s     1 1 1   -6    2    3 o     8.96   3.00 
1750s     1 1 1   -6    2    4 o     4.88   2.17 
1750s     1 1 1   -6    2    5 o     7.35   2.58 
1750s     1 1 1   -6    2    6 o     6.93   2.91 
1750s     1 1 1   -6    2    7 o     8.14   2.74 
1750s     1 1 1   -5    0    2 o    44.04   6.46 
1750s     1 1 1   -5    0    3 o    15.30   3.69 
1750s     1 1 1   -5    0    4 o    16.95   2.51 
1750s     1 1 1   -5    0    5 o    14.82   4.54 
1750s     1 1 1   -5    0    6 o    29.73   3.15 
1750s     1 1 1   -5    0    7 f    55.71  13.43 
1750s     1 1 1   -5    0    8 o    15.06   3.67 
1750s     1 1 1   -5    0    9 o     8.76   4.15 
1750s     1 1 1   -5    0   10 o     4.69   3.13 
1750s     1 1 1   -5    0   11 o    16.56   5.19 
1750s     1 1 1   -5    0   12 o     5.59   3.77 
1750s     1 1 1   -5    1    1 o    26.70   2.49 
1750s     1 1 1   -5    1    2 o    38.67   3.63 
1750s     1 1 1   -5    1    3 o    20.45   2.09 
1750s     1 1 1   -5    1    4 o     6.46   2.54 
1750s     1 1 1   -5    1    5 o    20.55   2.58 
1750s     1 1 1   -5    1    6 o    28.68   2.67 
1750s     1 1 1   -5    1    7 o     5.68   2.48 
1750s     1 1 1   -5    1    8 o     6.99   2.70 
1750s     1 1 1   -5    1    9 o    20.74   2.59 
1750s     1 1 1   -5    1   10 o    14.70   3.00 
1750s     1 1 1   -5    1   11 o     8.62   2.89 
1750s     1 1 1   -5    2    1 o     6.26   2.16 
1750s     1 1 1   -5    2    2 o     7.93   2.10 
1750s     1 1 1   -5    2    3 o    19.90   4.18 
1750s     1 1 1   -5    2    4 o     4.98   2.02 
1750s     1 1 1   -5    2    5 o    16.85   3.60 
1750s     1 1 1   -5    2    7 o     8.15   2.74 
1750s     1 1 1   -5    2    8 o     8.89   2.75 
1750s     1 1 1   -4    0    2 o     4.55   2.74 
1750s     1 1 1   -4    0    3 o    23.50   2.52 
1750s     1 1 1   -4    0    4 o    19.15   3.81 
1750s     1 1 1   -4    0    7 o    20.06   2.98 
1750s     1 1 1   -4    0    8 o    28.85   3.55 
1750s     1 1 1   -4    0    9 o     5.36   3.45 
1750s     1 1 1   -4    0   10 o    25.68   3.87 
1750s     1 1 1   -4    0   11 o    23.28   3.81 
1750s     1 1 1   -4    0   12 o    11.39   4.82 
1750s     1 1 1   -4    0   13 o     7.07   3.96 
1750s     1 1 1   -4    1    1 o    31.99   4.35 
1750s     1 1 1   -4    1    2 o    18.48   1.94 
1750s     1 1 1   -4    1    3 f    18.93   2.01 
1750s     1 1 1   -4    1    4 o    38.05   3.65 
1750s     1 1 1   -4    1    5 o    36.34   3.49 
1750s     1 1 1   -4    1    6 o    18.08   3.24 
1750s     1 1 1   -4    1    7 o    20.11   2.29 
1750s     1 1 1   -4    1    8 o    11.25   2.61 
1750s     1 1 1   -4    1    9 o    27.09   3.02 
1750s     1 1 1   -4    1   10 o    17.78   3.55 
1750s     1 1 1   -4    1   11 o    10.45   3.55 
1750s     1 1 1   -4    1   12 o     7.42   2.61 
1750s     1 1 1   -4    2    1 o     7.72   2.01 
1750s     1 1 1   -4    2    2 o    30.88   3.36 
1750s     1 1 1   -4    2    3 o    19.14   2.65 
1750s     1 1 1   -4    2    4 o     4.44   2.00 
1750s     1 1 1   -4    2    5 f    26.44   8.10 
1750s     1 1 1   -4    2    6 o    10.83   3.21 
1750s     1 1 1   -4    2    7 o     6.03   2.73 
1750s     1 1 1   -4    2    8 o    12.78   2.87 
1750s     1 1 1   -3    0    2 o     3.40   2.13 
1750s     1 1 1   -3    0    3 o     5.40   2.78 
1750s     1 1 1   -3    0    4 o    11.52   2.39 
1750s     1 1 1   -3    0    5 o    55.13   5.36 
1750s     1 1 1   -3    0    6 f    31.55   3.22 
1750s     1 1 1   -3    0    7 o     6.95   4.11 
1750s     1 1 1   -3    0    8 o     6.00   3.79 
1750s     1 1 1   -3    0    9 o    23.03   3.41 
1750s     1 1 1   -3    0   10 o     4.79   3.36 
1750s     1 1 1   -3    0   11 o    10.46   5.21 
1750s     1 1 1   -3    0   12 o    11.53   6.07 
1750s     1 1 1   -3    0   13 o     3.22   2.15 
1750s     1 1 1   -3    1    1 o    53.95   5.22 
1750s     1 1 1   -3    1    2 o    21.50   3.03 
1750s     1 1 1   -3    1    3 o    42.88   4.08 
1750s     1 1 1   -3    1    4 o    42.70   6.13 
1750s     1 1 1   -3    1    5 o    41.12   3.18 
1750s     1 1 1   -3    1    6 o    17.31   2.67 
1750s     1 1 1   -3    1    7 o    35.59   4.21 
1750s     1 1 1   -3    1    8 o    18.53   2.36 
1750s     1 1 1   -3    1    9 o    11.55   2.71 
1750s     1 1 1   -3    1   10 o    11.41   2.79 
1750s     1 1 1   -3    1   11 o     6.92   2.69 
1750s     1 1 1   -3    1   12 o     7.03   2.45 
1750s     1 1 1   -3    2    1 o    18.65   2.01 
1750s     1 1 1   -3    2    2 o    16.33   1.93 
1750s     1 1 1   -3    2    3 o    32.88   5.01 
1750s     1 1 1   -3    2    4 o     9.99   2.93 
1750s     1 1 1   -3    2    5 o    20.62   2.93 
1750s     1 1 1   -3    2    6 o     9.18   3.06 
1750s     1 1 1   -3    2    7 o     6.90   2.83 
1750s     1 1 1   -3    2    8 o     5.26   2.23 
1750s     1 1 1   -2    0    1 o    37.92   5.29 
1750s     1 1 1   -2    0    2 o    25.98   3.53 
1750s     1 1 1   -2    0    3 o    20.20   2.27 
1750s     1 1 1   -2    0    4 o    43.74   4.27 
1750s     1 1 1   -2    0    5 o    32.34   3.28 
1750s     1 1 1   -2    0    6 o    61.28   6.06 
1750s     1 1 1   -2    0    7 o    39.92   3.91 
1750s     1 1 1   -2    0    8 o     5.73   3.51 
1750s     1 1 1   -2    0    9 o    34.44   8.22 
1750s     1 1 1   -2    0   10 o     5.00   3.24 
1750s     1 1 1   -2    0   11 o     5.95   3.63 
1750s     1 1 1   -2    0   12 o     7.57   4.58 
1750s     1 1 1   -2    1    1 o     5.64   1.74 
1750s     1 1 1   -2    1    2 o    27.80   2.66 
1750s     1 1 1   -2    1    3 f    58.08   5.70 
1750s     1 1 1   -2    1    4 o    17.13   2.16 
1750s     1 1 1   -2    1    5 o    17.82   1.84 
1750s     1 1 1   -2    1    6 o    38.29   4.36 
1750s     1 1 1   -2    1    7 o    21.32   2.41 
1750s     1 1 1   -2    1    8 o    14.24   2.30 
1750s     1 1 1   -2    1    9 o    23.48   2.71 
1750s     1 1 1   -2    1   10 f    12.02   2.17 
1750s     1 1 1   -2    1   11 o    15.91   5.89 
1750s     1 1 1   -2    1   12 o     7.00   2.53 
1750s     1 1 1   -2    2    1 o    15.73   2.27 
1750s     1 1 1   -2    2    2 o    24.74   2.59 
1750s     1 1 1   -2    2    3 o    16.53   2.59 
1750s     1 1 1   -2    2    4 o     6.46   2.78 
1750s     1 1 1   -2    2    5 o    13.27   4.40 
1750s     1 1 1   -2    2    6 o     5.58   2.29 
1750s     1 1 1   -2    2    7 o     6.76   2.38 
1750s     1 1 1   -2    2    8 o     5.29   2.14 
1750s     1 1 1   -1    0    1 o    28.12   3.79 
1750s     1 1 1   -1    0    2 o    21.59   2.21 
1750s     1 1 1   -1    0    3 o    33.14   3.24 
1750s     1 1 1   -1    0    4 o    43.39   4.18 
1750s     1 1 1   -1    0    5 f    46.52   4.56 
1750s     1 1 1   -1    0    6 o    76.28  14.50 
1750s     1 1 1   -1    0    7 o     5.12   3.18 
1750s     1 1 1   -1    0    9 o    37.08   8.90 
1750s     1 1 1   -1    0   10 o     6.65   3.72 
1750s     1 1 1   -1    0   11 o     6.86   4.45 
1750s     1 1 1   -1    0   12 o     4.18   2.86 
1750s     1 1 1   -1    1    1 o    36.99   3.46 
1750s     1 1 1   -1    1    2 o    40.11   3.76 
1750s     1 1 1   -1    1    3 o    15.12   3.05 
1750s     1 1 1   -1    1    4 o    11.44   2.42 
1750s     1 1 1   -1    1    5 f     7.66   2.37 
1750s     1 1 1   -1    1    6 o    37.21   3.40 
1750s     1 1 1   -1    1    7 o    13.99   2.19 
1750s     1 1 1   -1    1    8 o    23.42   2.40 
1750s     1 1 1   -1    1    9 o    12.59   2.48 
1750s     1 1 1   -1    1   10 o    14.84   2.83 
1750s     1 1 1   -1    1   11 o    13.90   3.02 
1750s     1 1 1   -1    2    1 o     7.71   2.59 
1750s     1 1 1   -1    2    2 o     5.95   2.09 
1750s     1 1 1   -1    2    3 o    25.96   3.59 
1750s     1 1 1   -1    2    4 o    16.53   2.52 
1750s     1 1 1   -1    2    5 o    12.51   2.97 
1750s     1 1 1   -1    2    6 o    12.40   3.34 
1750s     1 1 1   -1    2    7 o     5.97   2.01 
1750s     1 1 1   -1    2    8 o     8.24   2.40 
1750s     1 1 1    0    0    1 o    40.04   3.82 
1750s     1 1 1    0    0    2 o    58.22   5.69 
1750s     1 1 1    0    0    3 o    47.47   4.60 
1750s     1 1 1    0    0    4 o     7.98   2.75 
1750s     1 1 1    0    0    5 o    50.74   7.60 
1750s     1 1 1    0    0    6 o    14.87   1.94 
1750s     1 1 1    0    0    7 o     3.62   2.41 
1750s     1 1 1    0    0    8 o    36.19   7.98 
1750s     1 1 1    0    0    9 o    10.11   5.01 
1750s     1 1 1    0    0   10 o    18.08   3.24 
1750s     1 1 1    0    0   11 o    12.35   4.26 
1750s     1 1 1    0    0   12 o     9.41   4.38 
1750s     1 1 1    0    1    1 o    92.10  11.26 
1750s     1 1 1    0    1    2 o    47.48   4.50 
1750s     1 1 1    0    1    3 o    22.08   2.22 
1750s     1 1 1    0    1    4 o     8.62   2.51 
1750s     1 1 1    0    1    5 o    24.16   1.98 
1750s     1 1 1    0    1    6 o    16.72   1.95 
1750s     1 1 1    0    1    7 o     5.50   2.46 
1750s     1 1 1    0    1    8 o    21.06   2.19 
1750s     1 1 1    0    1    9 o     5.99   2.45 
1750s     1 1 1    0    1   10 o     8.62   3.03 
1750s     1 1 1    0    1   11 o     9.15   3.06 
1750s     1 1 1    0    2    0 o    27.82   5.58 
1750s     1 1 1    0    2    1 o    29.68   4.10 
1750s     1 1 1    0    2    2 o    37.82   4.30 
1750s     1 1 1    0    2    3 o    14.42   1.91 
1750s     1 1 1    0    2    4 o    13.55   2.70 
1750s     1 1 1    0    2    5 o     8.67   3.07 
1750s     1 1 1    0    2    6 o    22.77   5.53 
1750s     1 1 1    0    2    7 o     5.74   2.12 
1750s     1 1 1    0    2    8 o     9.78   2.64 
1750s     1 1 1    1    0    1 o    10.19   1.09 
1750s     1 1 1    1    0    2 o    20.07   1.88 
1750s     1 1 1    1    0    3 o    28.76   2.81 
1750s     1 1 1    1    0    4 o     3.16   2.18 
1750s     1 1 1    1    0    5 o    35.75   3.54 
1750s     1 1 1    1    0    6 f    52.32   5.12 
1750s     1 1 1    1    0    7 o    37.09   5.54 
1750s     1 1 1    1    0    8 o     6.52   3.32 
1750s     1 1 1    1    0    9 o     3.67   2.45 
1750s     1 1 1    1    0   10 o     6.03   3.17 
1750s     1 1 1    1    0   11 o     3.13   2.20 
1750s     1 1 1    1    0   12 o     4.06   2.74 
1750s     1 1 1    1    1    0 o    34.97   2.64 
1750s     1 1 1    1    1    1 o    15.45   1.46 
1750s     1 1 1    1    1    2 o    27.96   2.66 
1750s     1 1 1    1    1    3 o    55.14   5.35 
1750s     1 1 1    1    1    4 o    14.46   1.65 
1750s     1 1 1    1    1    5 o     7.23   2.19 
1750s     1 1 1    1    1    6 o    10.31   2.54 
1750s     1 1 1    1    1    7 o    11.70   2.22 
1750s     1 1 1    1    1    8 o    11.24   2.14 
1750s     1 1 1    1    1    9 o     7.60   2.88 
1750s     1 1 1    1    1   10 o     8.83   2.34 
1750s     1 1 1    1    1   11 o    12.55   3.17 
1750s     1 1 1    1    2    0 o    24.36   5.60 
1750s     1 1 1    1    2    1 o    13.12   2.09 
1750s     1 1 1    1    2    2 o    10.37   2.52 
1750s     1 1 1    1    2    3 o    14.39   1.98 
1750s     1 1 1    1    2    4 o    26.67   8.23 
1750s     1 1 1    1    2    5 o    22.53   5.20 
1750s     1 1 1    1    2    6 o    13.94   2.61 
1750s     1 1 1    1    2    7 o     7.45   2.38 
1750s     1 1 1    1    2    8 o     4.51   2.05 
1750s     1 1 1    2    0    1 o    13.06   1.30 
1750s     1 1 1    2    0    2 o    10.37   1.36 
1750s     1 1 1    2    0    3 o    20.89   2.04 
1750s     1 1 1    2    0    4 o    45.12   4.31 
1750s     1 1 1    2    0    5 o    15.37   1.91 
1750s     1 1 1    2    0    6 o    28.38   2.79 
1750s     1 1 1    2    0    7 o    16.02   2.31 
1750s     1 1 1    2    0    8 o     3.40   2.35 
1750s     1 1 1    2    0    9 o     4.23   2.72 
1750s     1 1 1    2    0   10 o     3.89   2.43 
1750s     1 1 1    2    0   11 o    10.26   3.01 
1750s     1 1 1    2    1    0 o    34.61   2.64 
1750s     1 1 1    2    1    1 o    53.93   5.22 
1750s     1 1 1    2    1    2 o    20.62   2.08 
1750s     1 1 1    2    1    3 o    44.45   3.37 
1750s     1 1 1    2    1    4 o    24.41   2.00 
1750s     1 1 1    2    1    5 o    40.33   4.58 
1750s     1 1 1    2    1    6 o    41.76   5.03 
1750s     1 1 1    2    1    7 o    28.20   3.43 
1750s     1 1 1    2    1    8 o    33.56   3.76 
1750s     1 1 1    2    1    9 o     4.41   1.97 
1750s     1 1 1    2    1   10 o    15.24   3.10 
1750s     1 1 1    2    2    0 o    25.09   3.38 
1750s     1 1 1    2    2    1 o     9.96   2.30 
1750s     1 1 1    2    2    2 o    15.79   2.28 
1750s     1 1 1    2    2    3 f    23.73   2.57 
1750s     1 1 1    2    2    4 o    31.55   3.47 
1750s     1 1 1    2    2    5 o    22.42   5.53 
1750s     1 1 1    2    2    6 o    21.84   3.98 
1750s     1 1 1    2    2    7 o    11.92   3.24 
1750s     1 1 1    3    0    1 o    20.22   2.60 
1750s     1 1 1    3    0    2 o    15.58   1.67 
1750s     1 1 1    3    0    3 o    43.75   4.24 
1750s     1 1 1    3    0    4 o    53.24   5.13 
1750s     1 1 1    3    0    5 o     9.04   2.60 
1750s     1 1 1    3    0    6 o    16.05   2.16 
1750s     1 1 1    3    0    7 o    10.18   3.61 
1750s     1 1 1    3    0    8 f    21.57   2.93 
1750s     1 1 1    3    0    9 o     5.10   2.75 
1750s     1 1 1    3    0   10 o     9.06   4.48 
1750s     1 1 1    3    0   11 o     7.20   4.29 
1750s     1 1 1    3    1    0 o     6.01   1.35 
1750s     1 1 1    3    1    1 o    38.17   5.32 
1750s     1 1 1    3    1    2 o    88.61  10.65 
1750s     1 1 1    3    1    3 o    46.76   4.49 
1750s     1 1 1    3    1    4 o    21.38   1.98 
1750s     1 1 1    3    1    5 o    10.82   1.68 
1750s     1 1 1    3    1    6 o     9.92   1.96 
1750s     1 1 1    3    1    7 o    13.79   1.74 
1750s     1 1 1    3    1    8 o    18.26   2.25 
1750s     1 1 1    3    1    9 o    10.74   2.36 
1750s     1 1 1    3    1   10 o     4.53   1.95 
1750s     1 1 1    3    2    0 o    36.54   6.90 
1750s     1 1 1    3    2    1 o     7.87   2.79 
1750s     1 1 1    3    2    2 o    18.30   2.61 
1750s     1 1 1    3    2    3 o    17.39   2.45 
1750s     1 1 1    3    2    4 o    17.18   2.74 
1750s     1 1 1    3    2    5 o    13.02   2.60 
1750s     1 1 1    3    2    6 o     4.72   1.98 
1750s     1 1 1    4    0    1 o     3.64   2.08 
1750s     1 1 1    4    0    2 o    63.80   6.24 
1750s     1 1 1    4    0    3 o    19.19   1.93 
1750s     1 1 1    4    0    4 o    63.44   6.28 
1750s     1 1 1    4    0    5 o    30.78   6.03 
1750s     1 1 1    4    0    6 o     9.03   2.53 
1750s     1 1 1    4    0    7 o    18.16   2.40 
1750s     1 1 1    4    0    8 o     8.94   3.14 
1750s     1 1 1    4    0    9 o     6.87   3.36 
1750s     1 1 1    4    0   10 o     9.58   4.40 
1750s     1 1 1    4    1    0 o    24.37   2.38 
1750s     1 1 1    4    1    1 o    49.48   4.80 
1750s     1 1 1    4    1    2 o    10.45   1.03 
1750s     1 1 1    4    1    3 o    15.01   1.64 
1750s     1 1 1    4    1    4 o     4.52   1.88 
1750s     1 1 1    4    1    5 f    35.40   3.27 
1750s     1 1 1    4    1    6 o     8.15   2.10 
1750s     1 1 1    4    1    7 o     9.72   1.59 
1750s     1 1 1    4    1    8 o     5.93   1.88 
1750s     1 1 1    4    1    9 o    13.31   3.66 
1750s     1 1 1    4    2    0 o    12.03   2.31 
1750s     1 1 1    4    2    1 o    13.76   1.98 
1750s     1 1 1    4    2    2 o    10.87   2.55 
1750s     1 1 1    4    2    3 o     7.78   2.40 
1750s     1 1 1    4    2    4 o    19.45   4.53 
1750s     1 1 1    4    2    5 o    11.32   4.24 
1750s     1 1 1    4    2    6 o     7.29   3.50 
1750s     1 1 1    5    0    1 o    67.42  11.14 
1750s     1 1 1    5    0    2 o    13.50   3.13 
1750s     1 1 1    5    0    3 o    22.37   2.21 
1750s     1 1 1    5    0    4 o    56.42   6.72 
1750s     1 1 1    5    0    5 o    25.46   3.07 
1750s     1 1 1    5    0    6 o    38.61   4.82 
1750s     1 1 1    5    0    7 o    14.33   2.65 
1750s     1 1 1    5    0    8 f     4.56   2.78 
1750s     1 1 1    5    0    9 o     8.50   3.26 
1750s     1 1 1    5    1    0 o    21.65   2.85 
1750s     1 1 1    5    1    1 o    12.29   1.67 
1750s     1 1 1    5    1    2 o    11.21   3.27 
1750s     1 1 1    5    1    3 o     9.29   2.49 
1750s     1 1 1    5    1    4 o    12.76   2.42 
1750s     1 1 1    5    1    5 o     4.61   0.86 
1750s     1 1 1    5    1    6 o    21.81   2.38 
1750s     1 1 1    5    1    7 o    11.05   2.11 
1750s     1 1 1    5    1    8 o     4.27   1.64 
1750s     1 1 1    5    2    0 o    17.82   3.76 
1750s     1 1 1    5    2    1 o    13.94   3.96 
1750s     1 1 1    5    2    2 o    14.67   2.97 
1750s     1 1 1    5    2    3 o    12.27   4.35 
1750s     1 1 1    5    2    4 o    12.90   2.88 
1750s     1 1 1    5    2    5 o     8.21   2.77 
1750s     1 1 1    6    0    1 o     4.02   2.51 
1750s     1 1 1    6    0    2 o    14.11   3.04 
1750s     1 1 1    6    0    4 o    44.86   5.41 
1750s     1 1 1    6    0    5 f    22.85   4.74 
1750s     1 1 1    6    0    6 o    41.69   6.63 
1750s     1 1 1    6    0    7 o     7.42   2.96 
1750s     1 1 1    6    0    8 o    13.47   5.61 
1750s     1 1 1    6    1    0 o    25.42   2.26 
1750s     1 1 1    6    1    1 o     9.87   3.01 
1750s     1 1 1    6    1    2 o    28.37   5.85 
1750s     1 1 1    6    1    3 o    16.66   3.91 
1750s     1 1 1    6    1    4 o    23.02   5.62 
1750s     1 1 1    6    1    6 o    26.51   4.88 
1750s     1 1 1    6    1    7 o     3.67   1.58 
1750s     1 1 1    6    2    0 o     8.22   2.50 
1750s     1 1 1    6    2    2 o     9.67   2.35 
1750s     1 1 1    6    2    3 o     3.73   1.60 
1750s     1 1 1    7    0    1 o    10.99   3.37 
1750s     1 1 1    7    0    2 o    17.23   3.99 
1750s     1 1 1    7    0    3 o     5.15   2.69 
1750s     1 1 1    7    0    4 o     5.19   3.01 
1750s     1 1 1    7    0    5 o    23.76   3.00 
1750s     1 1 1    7    0    6 o     5.48   3.05 
1750s     1 1 1    7    0    7 o     6.05   3.12 
1750s     1 1 1    7    0    8 o     7.94   3.69 
1750s     1 1 1    7    1    0 o    33.08   3.93 
1750s     1 1 1    7    1    1 o     8.43   3.00 
1750s     1 1 1    7    1    2 o    10.12   3.61 
1750s     1 1 1    7    1    3 o    14.66   3.85 
1750s     1 1 1    7    1    4 o     9.43   3.13 
1750s     1 1 1    7    1    6 o    14.64   4.20 
1750s     1 1 1    7    2    0 o    14.80   3.92 
1750s     1 1 1    7    2    1 o     6.02   2.00 
1750s     1 1 1    8    0    2 o    29.07   8.06 
1750s     1 1 1    8    0    3 o     5.29   2.84 
1750s     1 1 1    8    0    4 o    22.81   5.95 
1750s     1 1 1    8    0    5 o     4.11   2.70 
1750s     1 1 1    8    1    0 o     7.24   1.50 
1750s     1 1 1    8    1    1 o     8.85   3.06 
1750s     1 1 1    8    1    2 o     6.83   3.09 
1750s     1 1 1    8    1    3 o    18.14   5.99 
1750s     1 1 1    9    0    1 o    13.49   3.22 
1750s     1 1 1    9    0    2 o    11.72   3.95 
1750s     1 1 1   10    0    2 o     7.39   3.73 
1750s     1 1 1   10    1    0 o    16.08   6.44 
1750s     #END OF REFLECTIONS
1750s     
1750s     Starting iotbx.fetch_pdb
1750s     on Thu Mar 13 14:17:56 2025 by ubuntu
1750s     ===============================================================================
1750s     
1750s     Processing files:
1750s     -------------------------------------------------------------------------------
1750s     
1750s       No files found
1750s     
1750s     Processing PHIL parameters:
1750s     -------------------------------------------------------------------------------
1750s     
1750s       Adding command-line PHIL:
1750s       -------------------------
1750s         action=all
1750s     
1750s     Final processed PHIL parameters:
1750s     -------------------------------------------------------------------------------
1750s       fetch {
1750s         pdb_ids = "6yvd"
1750s         action = model data sequence half_maps *all
1750s       }
1750s     
1750s     
1750s     Starting job
1750s     ===============================================================================
1750s     Validating inputs:
1750s     
1750s     Model in PDB format saved to /tmp/autopkgtest.6Keolp/autopkgtest_tmp/python3.13/6yvd.pdb
1750s     Model in mmCIF format saved to /tmp/autopkgtest.6Keolp/autopkgtest_tmp/python3.13/6yvd.cif
1750s     Couldn't download sf for 6yvd at https://files.rcsb.org/download/6yvd-sf.cif.gz.
1750s     Cryo-EM map saved to /tmp/autopkgtest.6Keolp/autopkgtest_tmp/python3.13/emd_10944.map.gz
1750s     Cryo-EM half map 1 saved to /tmp/autopkgtest.6Keolp/autopkgtest_tmp/python3.13/emd_10944_half_map_1.map.gz
1750s     Cryo-EM half map 2 saved to /tmp/autopkgtest.6Keolp/autopkgtest_tmp/python3.13/emd_10944_half_map_2.map.gz
1750s     Sequence saved to /tmp/autopkgtest.6Keolp/autopkgtest_tmp/python3.13/6yvd.fa
1750s     
1750s     ===============================================================================
1750s     Job complete
1750s     Total CPU time: 0.59 seconds
1750s     Starting iotbx.fetch_pdb
1750s     on Thu Mar 13 14:18:13 2025 by ubuntu
1750s     ===============================================================================
1750s     
1750s     Processing files:
1750s     -------------------------------------------------------------------------------
1750s     
1750s       No files found
1750s     
1750s     Processing PHIL parameters:
1750s     -------------------------------------------------------------------------------
1750s     
1750s       Adding command-line PHIL:
1750s       -------------------------
1750s         action=model
1750s     
1750s     Final processed PHIL parameters:
1750s     -------------------------------------------------------------------------------
1750s       fetch {
1750s         pdb_ids = "6yvd"
1750s       }
1750s     
1750s     
1750s     Starting job
1750s     ===============================================================================
1750s     Validating inputs:
1750s     
1750s     Model in PDB format saved to /tmp/autopkgtest.6Keolp/autopkgtest_tmp/python3.13/6yvd.pdb
1750s     Model in mmCIF format saved to /tmp/autopkgtest.6Keolp/autopkgtest_tmp/python3.13/6yvd.cif
1750s     
1750s     ===============================================================================
1750s     Job complete
1750s     Total CPU time: 0.50 seconds
1750s     Starting iotbx.fetch_pdb
1750s     on Thu Mar 13 14:18:17 2025 by ubuntu
1750s     ===============================================================================
1750s     
1750s     Processing files:
1750s     -------------------------------------------------------------------------------
1750s     
1750s       No files found
1750s     
1750s     Processing PHIL parameters:
1750s     -------------------------------------------------------------------------------
1750s     
1750s       Adding command-line PHIL:
1750s       -------------------------
1750s         action=model
1750s     
1750s     Final processed PHIL parameters:
1750s     -------------------------------------------------------------------------------
1750s       fetch {
1750s         pdb_ids = "6yvd"
1750s       }
1750s     
1750s     
1750s     Starting job
1750s     ===============================================================================
1750s     Validating inputs:
1750s     
1750s     Model in PDB format saved to /tmp/autopkgtest.6Keolp/autopkgtest_tmp/python3.13/6yvd.pdb
1750s     Model in mmCIF format saved to /tmp/autopkgtest.6Keolp/autopkgtest_tmp/python3.13/6yvd.cif
1750s     
1750s     ===============================================================================
1750s     Job complete
1750s     Total CPU time: 0.48 seconds
1750s     Starting iotbx.fetch_pdb
1750s     on Thu Mar 13 14:18:23 2025 by ubuntu
1750s     ===============================================================================
1750s     
1750s     Processing files:
1750s     -------------------------------------------------------------------------------
1750s     
1750s       No files found
1750s     
1750s     Processing PHIL parameters:
1750s     -------------------------------------------------------------------------------
1750s     
1750s       Adding command-line PHIL:
1750s       -------------------------
1750s         action=data
1750s     
1750s     Final processed PHIL parameters:
1750s     -------------------------------------------------------------------------------
1750s       fetch {
1750s         pdb_ids = "6yvd"
1750s         action = model *data sequence half_maps all
1750s       }
1750s     
1750s     
1750s     Starting job
1750s     ===============================================================================
1750s     Validating inputs:
1750s     
1750s     Couldn't download sf for 6yvd at https://files.rcsb.org/download/6yvd-sf.cif.gz.
1750s     Cryo-EM map saved to /tmp/autopkgtest.6Keolp/autopkgtest_tmp/python3.13/emd_10944.map.gz
1750s     
1750s     ===============================================================================
1750s     Job complete
1750s     Total CPU time: 0.46 seconds
1750s     Starting iotbx.fetch_pdb
1750s     on Thu Mar 13 14:18:28 2025 by ubuntu
1750s     ===============================================================================
1750s     
1750s     Processing files:
1750s     -------------------------------------------------------------------------------
1750s     
1750s       No files found
1750s     
1750s     Processing PHIL parameters:
1750s     -------------------------------------------------------------------------------
1750s     
1750s       Adding command-line PHIL:
1750s       -------------------------
1750s         action=half_maps
1750s     
1750s     Final processed PHIL parameters:
1750s     -------------------------------------------------------------------------------
1750s       fetch {
1750s         pdb_ids = "6yvd"
1750s         action = model data sequence *half_maps all
1750s       }
1750s     
1750s     
1750s     Starting job
1750s     ===============================================================================
1750s     Validating inputs:
1750s     
1750s     Cryo-EM half map 1 saved to /tmp/autopkgtest.6Keolp/autopkgtest_tmp/python3.13/emd_10944_half_map_1.map.gz
1750s     Cryo-EM half map 2 saved to /tmp/autopkgtest.6Keolp/autopkgtest_tmp/python3.13/emd_10944_half_map_2.map.gz
1750s     
1750s     ===============================================================================
1750s     Job complete
1750s     Total CPU time: 0.50 seconds
1750s     Starting iotbx.fetch_pdb
1750s     on Thu Mar 13 14:18:34 2025 by ubuntu
1750s     ===============================================================================
1750s     
1750s     Processing files:
1750s     -------------------------------------------------------------------------------
1750s     
1750s       No files found
1750s     
1750s     Processing PHIL parameters:
1750s     -------------------------------------------------------------------------------
1750s     
1750s       Adding command-line PHIL:
1750s       -------------------------
1750s         action=sequence
1750s     
1750s     Final processed PHIL parameters:
1750s     -------------------------------------------------------------------------------
1750s       fetch {
1750s         pdb_ids = "6yvd"
1750s         action = model data *sequence half_maps all
1750s       }
1750s     
1750s     
1750s     Starting job
1750s     ===============================================================================
1750s     Validating inputs:
1750s     
1750s     Sequence saved to /tmp/autopkgtest.6Keolp/autopkgtest_tmp/python3.13/6yvd.fa
1750s     
1750s     ===============================================================================
1750s     Job complete
1750s     Total CPU time: 0.44 seconds
1750s     Starting iotbx.fetch_pdb
1750s     on Thu Mar 13 14:18:35 2025 by ubuntu
1750s     ===============================================================================
1750s     
1750s     Processing files:
1750s     -------------------------------------------------------------------------------
1750s     
1750s       No files found
1750s     
1750s     Processing PHIL parameters:
1750s     -------------------------------------------------------------------------------
1750s     
1750s       Adding command-line PHIL:
1750s       -------------------------
1750s         action=all
1750s     
1750s     Final processed PHIL parameters:
1750s     -------------------------------------------------------------------------------
1750s       fetch {
1750s         pdb_ids = "6yvd"
1750s         action = model data sequence half_maps *all
1750s       }
1750s     
1750s     
1750s     Starting job
1750s     ===============================================================================
1750s     Validating inputs:
1750s     
1750s     Model in PDB format saved to /tmp/autopkgtest.6Keolp/autopkgtest_tmp/python3.13/6yvd.pdb
1750s     Model in mmCIF format saved to /tmp/autopkgtest.6Keolp/autopkgtest_tmp/python3.13/6yvd.cif
1750s     Couldn't download sf for 6yvd at https://files.rcsb.org/download/6yvd-sf.cif.gz.
1750s     Cryo-EM map saved to /tmp/autopkgtest.6Keolp/autopkgtest_tmp/python3.13/emd_10944.map.gz
1750s     Cryo-EM half map 1 saved to /tmp/autopkgtest.6Keolp/autopkgtest_tmp/python3.13/emd_10944_half_map_1.map.gz
1750s     Cryo-EM half map 2 saved to /tmp/autopkgtest.6Keolp/autopkgtest_tmp/python3.13/emd_10944_half_map_2.map.gz
1750s     Sequence saved to /tmp/autopkgtest.6Keolp/autopkgtest_tmp/python3.13/6yvd.fa
1750s     
1750s     ===============================================================================
1750s     Job complete
1750s     Total CPU time: 0.55 seconds
1750s     OK
1750s     u+s,u,s: 0.32 0.30 0.02
1752s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1752s 139
1752s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1752s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_smoothing.py" [FAIL] 2.8s
1752s   Time:  2.77
1752s   Return code: 139
1752s   OKs: 0
1752s   Standard error:
1752s     Segmentation fault (core dumped)
1754s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1754s 139
1754s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1754s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_genetic_algorithm_with_mp.py" [FAIL] 4.3s
1754s   Standard error:
1754s   Time:  4.29
1754s   Return code: 139
1754s   OKs: 0
1754s     Segmentation fault (core dumped)
1754s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_1" [OK] 0.0s
1754s   Time:  0.01
1754s   Return code: 0
1754s   OKs: 1
1754s   Standard out:
1754s     Total OK: 511
1754s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_2" [OK] 0.0s
1754s   Time:  0.00
1754s   Return code: 0
1754s   OKs: 1
1754s   Standard out:
1754s     Total OK: 268
1754s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_3" [OK] 0.0s
1754s   Time:  0.00
1754s   Return code: 0
1754s   OKs: 1
1754s   Standard out:
1754s     Total OK: 164
1754s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_4" [OK] 0.0s
1754s   Time:  0.01
1754s   Return code: 0
1754s   OKs: 1
1754s   Standard out:
1754s     Total OK: 1420
1754s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_af_5" [OK] 0.0s
1754s   Time:  0.00
1754s   Return code: 0
1754s   OKs: 1
1754s   Standard out:
1754s     Total OK: 23
1754s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_vec3" [OK] 0.0s
1754s   Time:  0.00
1754s   Return code: 0
1754s   OKs: 1
1754s   Standard out:
1754s     Total OK: 83
1754s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_unsigned_float_arithmetic" [OK] 0.0s
1754s   Time:  0.00
1754s   Return code: 0
1754s   OKs: 1
1754s   Standard out:
1754s     OK
1754s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_mat3" [OK] 0.0s
1754s   Time:  0.00
1754s   Return code: 0
1754s   OKs: 1
1754s   Standard out:
1754s     Total OK: 129
1754s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_sym_mat3" [OK] 0.0s
1754s   Time:  0.00
1754s   Return code: 0
1754s   OKs: 1
1754s   Standard out:
1754s     Total OK: 91
1754s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_ref_matrix_facet" [OK] 0.0s
1754s   Time:  0.00
1754s   Return code: 0
1754s   OKs: 1
1754s   Standard out:
1754s     OK
1754s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_accessors" [OK] 0.0s
1754s   Time:  0.00
1754s   Return code: 0
1754s   OKs: 1
1754s   Standard out:
1754s     Total OK: 1730
1754s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_optional_copy" [OK] 0.0s
1754s   Time:  0.00
1754s   Return code: 0
1754s   OKs: 1
1754s   Standard out:
1754s     OK
1754s "/usr/lib/cctbx/python3.13/scitbx/array_family/tst_rectangular_full_packed" [OK] 0.0s
1754s   Time:  0.00
1754s   Return code: 0
1754s   OKs: 0
1754s   Standard out:
1754s     Test of accessor for rectangular full packed format skipped
1754s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_flex_argument_passing.py" [OK] 0.1s
1754s   Time:  0.14
1754s   Return code: 0
1754s   OKs: 1
1754s   Standard out:
1754s     OK
1755s "/usr/lib/cctbx/python3.13/scitbx/serialization/tst_base_256" [OK] 0.3s
1755s   Time:  0.33
1755s   Return code: 0
1755s   OKs: 1
1755s   Standard out:
1755s     OK
1757s   Standard error:
1757s     Segmentation fault (core dumped)
1757s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1757s 139
1757s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1757s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_basic.py" [FAIL] 4.9s
1757s   Time:  4.87
1757s   Return code: 139
1757s   OKs: 1
1757s   Standard out:
1757s     b'\n\xc3\x85 LATIN CAPITAL LETTER A WITH RING ABOVE\n\xc2\xb0 DEGREE SIGN\n\xce\x91 GREEK CAPITAL LETTER ALPHA\n\xce\x92 GREEK CAPITAL LETTER BETA\n\xce\x93 GREEK CAPITAL LETTER GAMMA = gamma function\n\xce\x94 GREEK CAPITAL LETTER DELTA\n\xce\x95 GREEK CAPITAL LETTER EPSILON\n\xce\x96 GREEK CAPITAL LETTER ZETA\n\xce\x97 GREEK CAPITAL LETTER ETA\n\xce\x98 GREEK CAPITAL LETTER THETA\n\xce\x99 GREEK CAPITAL LETTER IOTA = iota adscript\n\xce\x9a GREEK CAPITAL LETTER KAPPA\n\xce\x9b GREEK CAPITAL LETTER LAMDA\n\xce\x9c GREEK CAPITAL LETTER MU\n\xce\x9d GREEK CAPITAL LETTER NU\n\xce\x9e GREEK CAPITAL LETTER XI\n\xce\x9f GREEK CAPITAL LETTER OMICRON\n\xce\xa0 GREEK CAPITAL LETTER PI\n\xce\xa1 GREEK CAPITAL LETTER RHO\n\xce\xa3 GREEK CAPITAL LETTER SIGMA\n\xce\xa4 GREEK CAPITAL LETTER TAU\n\xce\xa5 GREEK CAPITAL LETTER UPSILON\n\xce\xa6 GREEK CAPITAL LETTER PHI\n\xce\xa7 GREEK CAPITAL LETTER CHI\n\xce\xa8 GREEK CAPITAL LETTER PSI\n\xce\xa9 GREEK CAPITAL LETTER OMEGA\n\xcf\x86 GREEK SMALL LETTER PHI\n\xcf\x87 GREEK SMALL LETTER CHI\n\xcf\x88 GREEK SMALL LETTER PSI\n\xcf\x89 GREEK SMALL LETTER OMEGA\n\xce\xb2 greek small letter beta\n\xce\xb8 greek small letter theta\n\xce\xa5 greek capital letter upsilon\n\xcf\x86 greek small letter phi\n\xcf\x80 greek small letter pi\n\xce\xb2 GREEK SMALL LETTER BETA\n\xc3\x9f latin small letter sharp s\n\xce\xb3 GREEK SMALL LETTER GAMMA\n\xce\xb4 GREEK SMALL LETTER DELTA\n\xce\xb5 GREEK SMALL LETTER EPSILON\n\xce\xb6 GREEK SMALL LETTER ZETA\n\xce\xb7 GREEK SMALL LETTER ETA\n\xce\xb8 GREEK SMALL LETTER THETA\n\xce\xb9 GREEK SMALL LETTER IOTA\n\xce\xba GREEK SMALL LETTER KAPPA\n\xce\xbb GREEK SMALL LETTER LAMDA = lambda\n\xce\xbc GREEK SMALL LETTER MU\n\xc2\xb5 micro sign\n\xce\xbd GREEK SMALL LETTER NU\n\xce\xbe GREEK SMALL LETTER XI\n\xce\xbf GREEK SMALL LETTER OMICRON\n\xcf\x80 GREEK SMALL LETTER PI math constant 3.141592...\n\xcf\x81 GREEK SMALL LETTER RHO\n\xcf\x82 GREEK SMALL LETTER FINAL SIGMA\n\xcf\x83 GREEK SMALL LETTER SIGMA\n\xcf\x84 GREEK SMALL LETTER TAU\n\xcf\x85 GREEK SMALL LETTER UPSILON\n'
1757s     Size of an empty container.
1757s     Some of those containers store a pointer to a raw storage:
1757s     the 'cumulative' entry refers to the total memory footprint
1757s     whereas the other entry does not include the raw storage.
1757s     
1757s                                               int : 4
1757s                                      af::ref<int> : 32
1757s                           scitbx::auto_array<int> : 8
1757s                          boost::shared_array<int> : 16
1757s                            boost::ptr_vector<int> : 24
1757s                                  std::vector<int> : 24
1757s                                   af::shared<int> : 16
1757s                           af::shared [cumulative] : 64
1757s                                std::valarray<int> : 16
1757s                                    af::versa<int> : 24
1757s                  af::versa<int, af::flex_grid<> > : 280
1757s     af::versa<int, af::flex_grid<> > [cumulative] : 328
1757s     
1757s                                               double : 8
1757s                                      af::ref<double> : 32
1757s                           scitbx::auto_array<double> : 8
1757s                          boost::shared_array<double> : 16
1757s                            boost::ptr_vector<double> : 24
1757s                                  std::vector<double> : 24
1757s                                   af::shared<double> : 16
1757s                              af::shared [cumulative] : 64
1757s                                std::valarray<double> : 16
1757s                                    af::versa<double> : 24
1757s                  af::versa<double, af::flex_grid<> > : 280
1757s     af::versa<double, af::flex_grid<> > [cumulative] : 328
1757s     
1757s     OK
1759s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1759s 139
1759s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1759s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_minimum_covering_ellipsoid.py" [FAIL] 4.5s
1759s   Time:  4.46
1759s   Return code: 139
1759s   OKs: 0
1759s   Standard error:
1759s     Segmentation fault (core dumped)
1762s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1762s 139
1762s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1762s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py" [FAIL] 5.0s
1762s   Time:  5.03
1762s   Return code: 139
1762s   OKs: 0
1762s   Standard error:
1762s     Segmentation fault (core dumped)
1762s "/usr/lib/cctbx/python3.13/scitbx/math/tests/tst" [OK] 0.0s
1762s   Time:  0.00
1762s   Return code: 0
1762s   OKs: 2
1762s   Standard out:
1762s     copysign(3.f, +0.f) = 3 instead of 0.f as per C99
1762s     copysign(3.f, -0.f) = -3 instead of -0.f as per C99
1762s     linear interpolation test OK
1762s     OK
1762s "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_givens" [OK] 0.0s
1762s   Time:  0.00
1762s   Return code: 0
1762s   OKs: 1
1762s   Standard out:
1762s     OK
1762s "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_householder" [OK] 0.0s
1762s   Time:  0.00
1762s   Return code: 0
1762s   OKs: 1
1762s   Standard out:
1762s     OK
1762s "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_svd" [OK] 0.0s
1762s   Time:  0.01
1762s   Return code: 0
1762s   OKs: 1
1762s   Standard out:
1762s     OK
1762s "/usr/lib/cctbx/python3.13/scitbx/matrix/tests/tst_cholesky" [OK] 0.2s
1762s   Time:  0.17
1762s   Return code: 0
1762s   OKs: 1
1762s   Standard out:
1762s     Exercising sizes up to 100
1762s     Hilbert
1762s     Condition 1
1762s     Condition 2
1762s     Condition 3
1762s     Condition 4
1762s     OK
1762s libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/tests/tst_row_echelon.py" [OK] 0.1s
1762s   Time:  0.08
1762s   Return code: 0
1762s   OKs: 1
1762s   Standard out:
1762s     OK
1762s libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/tests/tst_householder.py" [OK] 0.2s
1762s   Time:  0.16
1762s   Return code: 0
1762s   OKs: 1
1762s   Standard out:
1762s     OK
1762s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_matrix.py" [OK] 0.2s
1762s   Time:  0.16
1762s   Return code: 0
1762s   OKs: 1
1762s   Standard out:
1762s     OK
1764s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1764s 139
1764s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1764s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_cubic_equation.py" [FAIL] 5.1s
1764s   Time:  5.07
1764s   Return code: 139
1764s   OKs: 0
1764s   Standard error:
1764s     Segmentation fault (core dumped)
1767s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1767s 139
1767s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1767s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_cholesky.py" [FAIL] 4.4s
1767s   Time:  4.43
1767s   Return code: 139
1767s   OKs: 0
1767s   Standard error:
1767s     Segmentation fault (core dumped)
1769s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1769s 139
1769s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1769s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_svd.py" [FAIL] 4.9s
1769s   Time:  4.94
1769s   Return code: 139
1769s   OKs: 0
1769s   Standard error:
1769s     Segmentation fault (core dumped)
1772s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1772s 139
1772s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1772s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_eigensystem.py" [FAIL] 5.1s
1772s   Time:  5.07
1772s   Return code: 139
1772s   OKs: 0
1772s   Standard error:
1772s     Segmentation fault (core dumped)
1774s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1774s 139
1774s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1774s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_lapack_svd.py" [FAIL] 5.1s
1774s   Time:  5.07
1774s   Return code: 139
1774s   OKs: 0
1774s   Standard error:
1774s     Segmentation fault (core dumped)
1774s libtbx.python "/usr/lib/python3/dist-packages/scitbx/error/tst_error.py" [OK] 0.1s
1774s   Time:  0.07
1774s   Return code: 0
1774s   OKs: 1
1774s   Standard out:
1774s     OK
1774s libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_map.py" [OK] 0.1s
1774s   Time:  0.06
1774s   Return code: 0
1774s   OKs: 1
1774s   Standard out:
1774s     OK
1774s libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_set.py" [OK] 0.1s
1774s   Time:  0.06
1774s   Return code: 0
1774s   OKs: 1
1774s   Standard out:
1774s     OK
1774s libtbx.python "/usr/lib/python3/dist-packages/scitbx/stl/tst_vector.py" [OK] 0.1s
1774s   Time:  0.06
1774s   Return code: 0
1774s   OKs: 1
1774s   Standard out:
1774s     OK
1777s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1777s 139
1777s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1777s libtbx.python "/usr/lib/python3/dist-packages/scitbx/linalg/tests/tst_lapack_dsyev.py" [FAIL] 5.1s
1777s   Time:  5.13
1777s   Return code: 139
1777s   OKs: 0
1777s   Standard error:
1777s     Segmentation fault (core dumped)
1779s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1779s 139
1779s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1779s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/regression_test.py" [FAIL] 4.9s
1779s   Time:  4.90
1779s   Return code: 139
1779s   OKs: 0
1779s   Standard error:
1779s     Segmentation fault (core dumped)
1782s   Standard error:
1782s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1782s 139
1782s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1782s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_flex.py" [FAIL] 5.5s
1782s   Time:  5.46
1782s   Return code: 139
1782s   OKs: 0
1782s     Segmentation fault (core dumped)
1785s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1785s 139
1785s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1785s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_numpy_bridge.py" [FAIL] 5.5s
1785s   Time:  5.54
1785s   Return code: 139
1785s   OKs: 0
1785s   Standard error:
1785s     Segmentation fault (core dumped)
1787s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1787s 139
1787s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1787s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_smart_selection.py" [FAIL] 5.1s
1787s   Time:  5.05
1787s   Return code: 139
1787s   OKs: 0
1787s   Standard error:
1787s     Segmentation fault (core dumped)
1790s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1790s 139
1790s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1790s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_shared.py" [FAIL] 5.0s
1790s   Standard error:
1790s     Segmentation fault (core dumped)
1790s   Time:  4.97
1790s   Return code: 139
1790s   OKs: 0
1794s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py" [OK] 2.9s
1794s   Time:  2.87
1794s   Return code: 0
1794s   OKs: 1
1794s   Standard out:
1794s     Loop over af::shared<double>:
1794s     data_size=1000, n_repeats=30000
1794s     size+begin inside  loop: 0.22 s
1794s          begin outside loop: 0.18 s
1794s     size+begin outside loop: 0.11 s
1794s     
1794s     data_size=10000, n_repeats=3000
1794s     size+begin inside  loop: 0.22 s
1794s          begin outside loop: 0.18 s
1794s     size+begin outside loop: 0.11 s
1794s     
1794s     data_size=100000, n_repeats=300
1794s     size+begin inside  loop: 0.22 s
1794s          begin outside loop: 0.18 s
1794s     size+begin outside loop: 0.11 s
1794s     
1794s     data_size=1000000, n_repeats=30
1794s     size+begin inside  loop: 0.22 s
1794s          begin outside loop: 0.18 s
1794s     size+begin outside loop: 0.11 s
1794s     
1794s     data_size=10000000, n_repeats=3
1794s     size+begin inside  loop: 0.23 s
1794s          begin outside loop: 0.18 s
1794s     size+begin outside loop: 0.11 s
1794s     
1794s     OK
1794s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_cubicle_neighbors.py" [OK] 0.1s
1794s   Time:  0.14
1794s   Return code: 0
1794s   OKs: 1
1794s   Standard out:
1794s     OK
1794s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_r3_utils.py" [OK] 0.2s
1794s   Time:  0.16
1794s   Return code: 0
1794s   OKs: 1
1794s   Standard out:
1794s     OK
1794s libtbx.python "/usr/lib/python3/dist-packages/scitbx/tests/tst_regular_grid_on_unit_sphere.py" [OK] 0.9s
1794s   Time:  0.92
1794s   Return code: 0
1794s   OKs: 0
1797s   Standard error:
1797s     Segmentation fault (core dumped)
1797s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1797s 139
1797s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1797s libtbx.python "/usr/lib/python3/dist-packages/scitbx/matrix/__init__.py" [FAIL] 2.9s
1797s   Time:  2.90
1797s   Return code: 139
1797s   OKs: 0
1800s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1800s 139
1800s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1800s libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_random_transform.py" [FAIL] 2.9s
1800s   Time:  2.91
1800s   Return code: 139
1800s   OKs: 0
1800s   Standard error:
1800s     Segmentation fault (core dumped)
1800s libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_graph.py" [OK] 0.1s
1800s   Time:  0.05
1800s   Return code: 0
1800s   OKs: 1
1800s   Standard out:
1800s     OK
1800s libtbx.python "/usr/lib/python3/dist-packages/scitbx/python_utils/tst_robust.py" [OK] 0.1s
1800s   Time:  0.13
1800s   Return code: 0
1800s   OKs: 1
1800s   Standard out:
1800s     OK
1803s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1803s 139
1803s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1803s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/superpose.py" [FAIL] 2.6s
1803s   Time:  2.64
1803s   Return code: 139
1803s   OKs: 0
1803s   Standard error:
1803s     Segmentation fault (core dumped)
1805s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1805s 139
1805s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1805s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/spe.py" [FAIL] 2.6s
1805s   Time:  2.62
1805s   Return code: 139
1805s   OKs: 0
1805s   Standard error:
1805s     Segmentation fault (core dumped)
1807s libtbx.python "/usr/lib/python3/dist-packages/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py" [OK] 20.0s
1807s   Time: 20.03
1807s   Return code: 0
1807s   OKs: 1
1807s   Standard out:
1807s     data_size = 1000 n_repeats = 30000
1807s       use_pointers = False
1807s         use_iterators = 0 time = 0.76 s overhead = 0.00 s (d[p[i]] -2.04636e-08)
1807s         use_iterators = 1 time = 0.34 s overhead = 0.00 s (d[*p++] -2.04636e-08)
1807s       use_pointers = True
1807s         use_iterators = 0 time = 0.26 s overhead = 0.00 s (*dp[i]  -2.04636e-08)
1807s         use_iterators = 1 time = 0.71 s overhead = 0.00 s (**dpi++ -2.04636e-08)
1807s         use_iterators = 2 time = 0.10 s overhead = 0.00 s (**dpp++ -2.04636e-08)
1807s     data_size = 10000 n_repeats = 3000
1807s       use_pointers = False
1807s         use_iterators = 0 time = 0.76 s overhead = 0.00 s (d[p[i]] -4.09272e-08)
1807s         use_iterators = 1 time = 0.34 s overhead = 0.00 s (d[*p++] -4.09272e-08)
1807s       use_pointers = True
1807s         use_iterators = 0 time = 0.25 s overhead = 0.00 s (*dp[i]  -4.09272e-08)
1807s         use_iterators = 1 time = 0.71 s overhead = 0.00 s (**dpi++ -4.09272e-08)
1807s         use_iterators = 2 time = 0.10 s overhead = 0.00 s (**dpp++ -4.09272e-08)
1807s     data_size = 100000 n_repeats = 300
1807s       use_pointers = False
1807s         use_iterators = 0 time = 0.76 s overhead = 0.00 s (d[p[i]] -4.36521e-08)
1807s         use_iterators = 1 time = 0.34 s overhead = 0.00 s (d[*p++] -4.36521e-08)
1807s       use_pointers = True
1807s         use_iterators = 0 time = 0.26 s overhead = 0.00 s (*dp[i]  -4.36521e-08)
1807s         use_iterators = 1 time = 0.71 s overhead = 0.00 s (**dpi++ -4.36521e-08)
1807s         use_iterators = 2 time = 0.10 s overhead = 0.00 s (**dpp++ -4.36521e-08)
1807s     data_size = 1000000 n_repeats = 30
1807s       use_pointers = False
1807s         use_iterators = 0 time = 0.80 s overhead = 0.02 s (d[p[i]] -5.48261e-07)
1807s         use_iterators = 1 time = 0.35 s overhead = 0.02 s (d[*p++] -5.48261e-07)
1807s       use_pointers = True
1807s         use_iterators = 0 time = 0.30 s overhead = 0.02 s (*dp[i]  -5.48261e-07)
1807s         use_iterators = 1 time = 0.80 s overhead = 0.02 s (**dpi++ -5.48261e-07)
1807s         use_iterators = 2 time = 0.14 s overhead = 0.02 s (**dpp++ -5.48261e-07)
1807s     data_size = 10000000 n_repeats = 3
1807s       use_pointers = False
1807s         use_iterators = 0 time = 2.31 s overhead = 0.25 s (d[p[i]] 2.56426e-06)
1807s         use_iterators = 1 time = 1.24 s overhead = 0.25 s (d[*p++] 2.56426e-06)
1807s       use_pointers = True
1807s         use_iterators = 0 time = 1.17 s overhead = 0.25 s (*dp[i]  2.56426e-06)
1807s         use_iterators = 1 time = 2.38 s overhead = 0.25 s (**dpi++ 2.56426e-06)
1807s         use_iterators = 2 time = 0.55 s overhead = 0.24 s (**dpp++ 2.56426e-06)
1807s     OK
1809s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1809s 139
1809s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1809s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/incremental_SO3_sampling.py" [FAIL] 4.0s
1809s   Time:  4.02
1809s   Return code: 139
1809s   OKs: 0
1809s   Standard error:
1809s     Segmentation fault (core dumped)
1812s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1812s 139
1812s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1812s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_curve_fitting.py" [FAIL] 4.3s
1812s   Time:  4.33
1812s   Return code: 139
1812s   OKs: 0
1812s   Standard error:
1812s     Segmentation fault (core dumped)
1812s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_similarity_indices.py" [OK] 0.1s
1812s   Time:  0.15
1812s   Return code: 0
1812s   OKs: 1
1812s   Standard out:
1812s     OK
1814s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1814s 139
1814s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1814s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_weighted_correlation.py" [FAIL] 4.8s
1814s   Time:  4.84
1814s   Return code: 139
1814s   OKs: 0
1814s   Standard error:
1814s     Segmentation fault (core dumped)
1814s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_fit_quadratic_function.py" [OK] 0.2s
1814s   Time:  0.20
1814s   Return code: 0
1814s   OKs: 1
1814s   Standard out:
1814s     OK
1815s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_gcd.py" [OK] 0.8s
1815s   Time:  0.75
1815s   Return code: 0
1815s   OKs: 1
1815s   Standard out:
1815s     compare_with_boost_rational_gcd(gcd_int_simple)
1815s     compare_with_boost_rational_gcd(gcd_long_simple)
1815s     compare_with_boost_rational_gcd(gcd_long_binary)
1815s     gcd_int_boost            999 w=0.06 u+s=0.06
1815s     gcd_int_simple           999 w=0.03 u+s=0.03
1815s     gcd_long_boost           999 w=0.06 u+s=0.06
1815s     gcd_long_simple          999 w=0.03 u+s=0.03
1815s     gcd_unsigned_long_binary 999 w=0.13 u+s=0.13
1815s     gcd_long_binary          999 w=0.13 u+s=0.14
1815s     OK
1817s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1817s 139
1817s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1817s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_exp_functions.py" [FAIL] 4.9s
1817s   Time:  4.93
1817s   Return code: 139
1817s   OKs: 0
1817s   Standard error:
1817s     Segmentation fault (core dumped)
1819s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1819s 139
1819s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1819s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_math.py" [FAIL] 4.5s
1819s   Time:  4.48
1819s   Return code: 139
1819s   OKs: 0
1819s   Standard error:
1819s     Segmentation fault (core dumped)
1821s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_r3_rotation.py" [OK] 4.0s
1821s   Time:  3.99
1821s   Return code: 0
1821s   OKs: 0
1821s   Standard out:
1821s     times unit quaternion <-> matrix
1821s          py: 0.06 0.03 s
1821s         c++: 0.08 0.09 s
1821s       ratio: 0.71 0.40
1821s     u+s,u,s: 3.94 3.93 0.01
1821s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_line_search.py" [OK] 0.2s
1821s   Time:  0.17
1821s   Return code: 0
1821s   OKs: 1
1821s   Standard out:
1821s     OK
1822s   Standard error:
1822s     Segmentation fault (core dumped)
1822s RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN RETURN CODE BEGIN 
1822s 139
1822s RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- RETURN CODE -END- 
1822s libtbx.python "/usr/lib/python3/dist-packages/scitbx/math/tests/tst_resample.py" [FAIL] 2.6s
1822s   Time:  2.59
1822s   Return code: 139
1822s   OKs: 0
3027s autopkgtest-virt-ssh [14:40:12]: ------- nova console-log 6cc3e037-5b12-4884-994e-9c0c17ef80b2 (adt-plucky-ppc64el-cctbx-20250313-110403-juju-7f2275-prod-proposed-migration-environment-20-6fe9cf99-60ca-4967-b7c1-5270bc9e095a) ------
3027s ERROR (CommandError): No server with a name or ID of '6cc3e037-5b12-4884-994e-9c0c17ef80b2' exists.
3027s ---------------------------------------------------
3027s ------- nova show 6cc3e037-5b12-4884-994e-9c0c17ef80b2 (adt-plucky-ppc64el-cctbx-20250313-110403-juju-7f2275-prod-proposed-migration-environment-20-6fe9cf99-60ca-4967-b7c1-5270bc9e095a) ------
3027s ERROR (CommandError): No server with a name or ID of '6cc3e037-5b12-4884-994e-9c0c17ef80b2' exists.
3027s ---------------------------------------------------
3027s 
5653s nova [W] Timed out waiting for 6cc3e037-5b12-4884-994e-9c0c17ef80b2 to get deleted.
5653s autopkgtest [15:23:58]: ERROR: testbed failure: testbed auxverb failed with exit code 255