0s autopkgtest [18:41:18]: starting date and time: 2025-02-03 18:41:18+0000 0s autopkgtest [18:41:18]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [18:41:18]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0pt80akg/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-testthat --apt-upgrade r-cran-stars --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-testthat/3.2.3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-5.secgroup --name adt-plucky-i386-r-cran-stars-20250203-184118-juju-7f2275-prod-proposed-migration-environment-15-92278b9a-d559-438b-a52b-6bdfcc283281 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 47s autopkgtest [18:42:05]: testbed dpkg architecture: amd64 47s autopkgtest [18:42:05]: testbed apt version: 2.9.18 47s autopkgtest [18:42:05]: @@@@@@@@@@@@@@@@@@@@ test bed setup 47s autopkgtest [18:42:05]: testbed release detected to be: None 47s autopkgtest [18:42:05]: updating testbed package index (apt update) 47s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 47s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 47s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 47s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 47s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 48s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [884 kB] 48s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.4 kB] 48s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [95.5 kB] 48s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [125 kB] 48s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [299 kB] 48s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [832 kB] 48s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [1328 B] 48s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [7208 B] 48s Fetched 2446 kB in 0s (6557 kB/s) 49s Reading package lists... 49s + lsb_release --codename --short 49s + RELEASE=plucky 49s + cat 49s + [ plucky != trusty ] 49s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 49s Reading package lists... 49s Building dependency tree... 49s Reading state information... 50s Calculating upgrade... 50s The following packages will be upgraded: 50s initramfs-tools initramfs-tools-bin initramfs-tools-core 50s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 50s Need to get 84.0 kB of archives. 50s After this operation, 9216 B of additional disk space will be used. 50s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.145ubuntu1 [7942 B] 50s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.145ubuntu1 [51.2 kB] 50s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.145ubuntu1 [24.8 kB] 50s Fetched 84.0 kB in 0s (4057 kB/s) 51s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108876 files and directories currently installed.) 51s Preparing to unpack .../initramfs-tools_0.145ubuntu1_all.deb ... 51s Unpacking initramfs-tools (0.145ubuntu1) over (0.142ubuntu35) ... 51s Preparing to unpack .../initramfs-tools-core_0.145ubuntu1_all.deb ... 51s Unpacking initramfs-tools-core (0.145ubuntu1) over (0.142ubuntu35) ... 51s Preparing to unpack .../initramfs-tools-bin_0.145ubuntu1_amd64.deb ... 51s Unpacking initramfs-tools-bin (0.145ubuntu1) over (0.142ubuntu35) ... 51s Setting up initramfs-tools-bin (0.145ubuntu1) ... 51s Setting up initramfs-tools-core (0.145ubuntu1) ... 51s Setting up initramfs-tools (0.145ubuntu1) ... 51s update-initramfs: deferring update (trigger activated) 51s Processing triggers for man-db (2.13.0-1) ... 51s Processing triggers for initramfs-tools (0.145ubuntu1) ... 52s update-initramfs: Generating /boot/initrd.img-6.12.0-12-generic 52s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 62s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 62s + /usr/lib/apt/apt-helper analyze-pattern ?true 62s + uname -r 62s + sed s/\./\\./g 62s + running_kernel_pattern=^linux-.*6\.12\.0-12-generic.* 62s + apt list ?obsolete 62s + tail -n+2 62s + + cut -d/ -f1 62s grep -v ^linux-.*6\.12\.0-12-generic.* 62s + true 62s + obsolete_pkgs= 62s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove 63s Reading package lists... 63s Building dependency tree... 63s Reading state information... 63s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 63s + grep -q trusty /etc/lsb-release 63s + [ ! -d /usr/share/doc/unattended-upgrades ] 63s + [ ! -d /usr/share/doc/lxd ] 63s + [ ! -d /usr/share/doc/lxd-client ] 63s + [ ! -d /usr/share/doc/snapd ] 63s + type iptables 63s + cat 63s + chmod 755 /etc/rc.local 63s + . /etc/rc.local 63s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 63s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 63s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 63s + uname -m 63s + [ x86_64 = ppc64le ] 63s + [ -d /run/systemd/system ] 63s + systemd-detect-virt --quiet --vm 63s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 63s + cat 63s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 63s + echo COMPRESS=lz4 63s autopkgtest [18:42:21]: upgrading testbed (apt dist-upgrade and autopurge) 63s Reading package lists... 64s Building dependency tree... 64s Reading state information... 64s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 64s Starting 2 pkgProblemResolver with broken count: 0 64s Done 65s Entering ResolveByKeep 65s 65s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 65s Reading package lists... 65s Building dependency tree... 65s Reading state information... 66s Starting pkgProblemResolver with broken count: 0 66s Starting 2 pkgProblemResolver with broken count: 0 66s Done 66s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 66s autopkgtest [18:42:24]: rebooting testbed after setup commands that affected boot 70s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 82s autopkgtest [18:42:40]: testbed running kernel: Linux 6.12.0-12-generic #12-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 22 16:36:37 UTC 2025 82s autopkgtest [18:42:40]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-stars 83s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-stars 0.6-7-1 (dsc) [2749 B] 83s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-stars 0.6-7-1 (tar) [4034 kB] 83s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-stars 0.6-7-1 (diff) [4392 B] 84s gpgv: Signature made Thu Jan 23 02:23:45 2025 UTC 84s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 84s gpgv: issuer "plessy@debian.org" 84s gpgv: Can't check signature: No public key 84s dpkg-source: warning: cannot verify inline signature for ./r-cran-stars_0.6-7-1.dsc: no acceptable signature found 84s autopkgtest [18:42:42]: testing package r-cran-stars version 0.6-7-1 84s autopkgtest [18:42:42]: build not needed 87s autopkgtest [18:42:45]: test run-unit-test: preparing testbed 87s Reading package lists... 87s Building dependency tree... 87s Reading state information... 87s Starting pkgProblemResolver with broken count: 0 88s Starting 2 pkgProblemResolver with broken count: 0 88s Done 88s The following NEW packages will be installed: 88s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 88s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdal-data 88s gdal-plugins javascript-common libabsl20230802 libaec0 libaom3 88s libarmadillo14 libarpack2t64 libavif16 libblas3 libblosc1 libcairo2 88s libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 88s libfreexl1 libfyba0t64 libgav1-1 libgdal36 libgeos-c1t64 libgeos3.13.0 88s libgeotiff5 libgfortran5 libgif7 libgomp1 libgpgmepp6t64 libgraphite2-3 88s libharfbuzz0b libhdf4-0-alt libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec 88s libheif-plugin-libde265 libheif1 libice6 libjbig0 libjpeg-turbo8 libjpeg8 88s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 88s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 88s libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js 88s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 88s libjs-twitter-bootstrap-datepicker libkmlbase1t64 libkmldom1t64 88s libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 liblua5.4-0 88s libminizip1t64 libmysqlclient24 libnetcdf19t64 libodbc2 libodbcinst2 88s libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 88s libpaper-utils libpaper2 libpixman-1-0 libpoppler145 libpq5 libproj25 88s libqhull-r8.0 librav1e0.7 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 88s libspatialite8t64 libsvtav1enc2 libsz2 libtcl8.6 libthai-data libthai0 88s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 88s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 88s libxt6t64 libyuv0 littler mysql-common node-bootstrap-sass node-html5shiv 88s node-normalize.css pandoc pandoc-data proj-data r-base-core r-cran-abind 88s r-cran-areal r-cran-askpass r-cran-base64enc r-cran-bdsmatrix r-cran-brio 88s r-cran-bslib r-cran-cachem r-cran-cairo r-cran-callr r-cran-class 88s r-cran-classint r-cran-cli r-cran-clue r-cran-cluster r-cran-codetools 88s r-cran-collapse r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11 88s r-cran-crayon r-cran-cubelyr r-cran-curl r-cran-dbi r-cran-deldir 88s r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 88s r-cran-evaluate r-cran-exactextractr r-cran-fansi r-cran-farver 88s r-cran-fastmap r-cran-fnn r-cran-fontawesome r-cran-formula r-cran-fs 88s r-cran-future r-cran-future.apply r-cran-generics r-cran-ggforce 88s r-cran-ggplot2 r-cran-ggthemes r-cran-globals r-cran-glue r-cran-goftest 88s r-cran-gridextra r-cran-gstat r-cran-gtable r-cran-highr r-cran-htmltools 88s r-cran-httpuv r-cran-httr r-cran-intervals r-cran-isoband r-cran-jquerylib 88s r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later 88s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 88s r-cran-littler r-cran-lmtest r-cran-lwgeom r-cran-magrittr r-cran-mapdata 88s r-cran-maps r-cran-mass r-cran-matrix r-cran-maxlik r-cran-memoise 88s r-cran-mgcv r-cran-mime r-cran-misctools r-cran-munsell r-cran-ncdfgeom 88s r-cran-ncmeta r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-pbapply 88s r-cran-pcict r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 88s r-cran-pkgload r-cran-plm r-cran-polyclip r-cran-praise r-cran-processx 88s r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 88s r-cran-randomforest r-cran-rappdirs r-cran-raster r-cran-rbibutils 88s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rdpack r-cran-rex 88s r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf r-cran-rpart r-cran-rprojroot 88s r-cran-s2 r-cran-sandwich r-cran-sass r-cran-scales r-cran-sf r-cran-sftime 88s r-cran-shiny r-cran-sourcetools r-cran-sp r-cran-spacetime r-cran-spatstat 88s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 88s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 88s r-cran-spatstat.sparse r-cran-spatstat.utils r-cran-stars r-cran-stringi 88s r-cran-stringr r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor 88s r-cran-terra r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 88s r-cran-tinytex r-cran-tweenr r-cran-units r-cran-utf8 r-cran-vctrs 88s r-cran-viridis r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk 88s r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo unixodbc-common 88s unzip x11-common xdg-utils zip 88s 0 upgraded, 292 newly installed, 0 to remove and 0 not upgraded. 88s Need to get 299 MB of archives. 88s After this operation, 786 MB of additional disk space will be used. 88s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 88s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 88s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 88s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 88s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 88s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 88s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 88s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 89s Get:9 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-data all 3.10.1+dfsg-1build2 [269 kB] 89s Get:10 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-plugins amd64 3.10.1+dfsg-1build2 [25.6 kB] 89s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 11+nmu1 [5936 B] 89s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libabsl20230802 amd64 20230802.1-4ubuntu2 [563 kB] 89s Get:13 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 89s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libaom3 amd64 3.11.0-1 [2761 kB] 89s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 89s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-13ubuntu1 [909 kB] 89s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 89s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarpack2t64 amd64 3.9.1-4 [120 kB] 89s Get:19 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarmadillo14 amd64 1:14.2.1+dfsg-1 [105 kB] 89s Get:20 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdav1d7 amd64 1.5.1-1 [743 kB] 89s Get:21 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgav1-1 amd64 0.19.0-3 [697 kB] 89s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 librav1e0.7 amd64 0.7.1-9 [1025 kB] 89s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2686 kB] 89s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 89s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 89s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libyuv0 amd64 0.0.1899.20250103-1 [352 kB] 89s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 libavif16 amd64 1.1.1-1ubuntu1 [113 kB] 89s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 89s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 89s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 89s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 89s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 89s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 89s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 89s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcfitsio10t64 amd64 4.5.0-5 [629 kB] 89s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 89s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libde265-0 amd64 1.0.15-1build4 [168 kB] 89s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 89s Get:39 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfyba0t64 amd64 4.1.1-11build1 [119 kB] 89s Get:40 http://ftpmaster.internal/ubuntu plucky/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [22.9 kB] 89s Get:41 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfreexl1 amd64 2.0.0-1build2 [41.7 kB] 89s Get:42 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos3.13.0 amd64 3.13.0-1 [1017 kB] 89s Get:43 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos-c1t64 amd64 3.13.0-1 [103 kB] 89s Get:44 http://ftpmaster.internal/ubuntu plucky/universe amd64 proj-data all 9.5.1-1 [7924 kB] 89s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 89s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 89s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 89s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 89s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 89s Get:50 http://ftpmaster.internal/ubuntu plucky/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB] 89s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeotiff5 amd64 1.7.3-1 [63.0 kB] 89s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libgif7 amd64 5.2.2-1ubuntu1 [35.2 kB] 89s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 89s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf4-0-alt amd64 4.3.0-1 [285 kB] 89s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 89s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-aomdec amd64 1.19.5-1build1 [11.6 kB] 89s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-libde265 amd64 1.19.5-1build1 [9074 B] 89s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif1 amd64 1.19.5-1build1 [422 kB] 89s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB] 89s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlbase1t64 amd64 1.3.0-12build1 [49.9 kB] 89s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmldom1t64 amd64 1.3.0-12build1 [156 kB] 89s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlengine1t64 amd64 1.3.0-12build1 [71.4 kB] 89s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 mysql-common all 5.8+1.1.1 [6800 B] 89s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libmysqlclient24 amd64 8.4.4-0ubuntu1 [1256 kB] 89s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 89s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu2 [531 kB] 89s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libltdl7 amd64 2.5.4-2.1 [46.1 kB] 89s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbc2 amd64 2.3.12-2ubuntu1 [186 kB] 89s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 unixodbc-common all 2.3.12-2ubuntu1 [9044 B] 89s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbcinst2 amd64 2.3.12-2ubuntu1 [34.1 kB] 89s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 libogdi4.1 amd64 4.1.1+ds-5 [219 kB] 89s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu3 [217 kB] 89s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgmepp6t64 amd64 1.24.1-2ubuntu1 [126 kB] 89s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 89s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libpoppler145 amd64 25.01.0-2 [1280 kB] 89s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libpq5 amd64 17.2-1build2 [153 kB] 89s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 89s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 librttopo1 amd64 1.1.0-3build2 [191 kB] 89s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libspatialite8t64 amd64 5.1.0-3build1 [1919 kB] 89s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build1 [1028 kB] 89s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgdal36 amd64 3.10.1+dfsg-1build2 [10.2 MB] 89s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-13ubuntu1 [148 kB] 89s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 89s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 89s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 89s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 89s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 89s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 89s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 89s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 89s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 89s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 89s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 89s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 89s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 89s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 89s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 89s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 89s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 89s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 89s Get:101 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 89s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 89s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 89s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.1-1 [255 kB] 89s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [52.6 kB] 89s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [29.1 kB] 89s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 89s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 89s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 89s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 89s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 89s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 89s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 89s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-data all 2.2.28-7build1 [19.4 kB] 89s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-0 amd64 2.2.28-7build1 [54.1 kB] 89s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 89s Get:117 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 89s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 89s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 89s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.2-1build1 [28.9 MB] 89s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 89s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 89s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 89s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 89s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 89s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 89s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 90s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 90s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.3-1 [1348 kB] 90s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 90s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 90s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 90s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 90s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 90s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 90s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 90s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 90s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 90s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 90s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 90s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 90s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 90s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 90s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 90s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 90s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 90s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 90s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 90s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-e1071 amd64 1.7-16-1 [565 kB] 90s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB] 90s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 90s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 90s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 90s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 90s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB] 90s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-s2 amd64 1.1.7-1 [2023 kB] 90s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-units amd64 0.8-5+dfsg-1 [275 kB] 90s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sf amd64 1.0-19+dfsg-1 [3313 kB] 90s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 90s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 90s Get:161 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 90s Get:162 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 90s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bdsmatrix amd64 1.3-7-1 [299 kB] 90s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 90s Get:165 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 90s Get:166 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 90s Get:167 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 90s Get:168 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 90s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 90s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB] 90s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 90s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 90s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 90s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 90s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 90s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 90s Get:177 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 90s Get:178 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.8.1-1 [397 kB] 90s Get:179 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.5-1 [356 kB] 90s Get:180 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 90s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cluster amd64 2.1.8-1 [579 kB] 90s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-clue amd64 0.3-66-1 [968 kB] 90s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 90s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-collapse amd64 2.0.19-1 [3476 kB] 90s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 90s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 90s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 90s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rex all 1.2.1-1 [129 kB] 90s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.1.0+dfsg-1 [195 kB] 90s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.2.0+dfsg-1 [405 kB] 90s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 90s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 90s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 90s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 90s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.1-1 [233 kB] 90s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cubelyr all 1.0.2-1 [347 kB] 90s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 90s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 90s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 90s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 90s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 90s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sp amd64 1:2.1-4+dfsg-1 [1472 kB] 90s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-terra amd64 1.8-10-1 [4257 kB] 90s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-raster amd64 3.6-31-1 [3176 kB] 90s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-exactextractr amd64 0.10.0-1build2 [578 kB] 90s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 90s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 90s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 90s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 90s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-globals all 0.16.3-1 [120 kB] 90s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 90s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-parallelly amd64 1.41.0-1 [507 kB] 90s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 90s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 90s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 90s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 90s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 90s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-2-1 [4456 kB] 90s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 90s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 90s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 90s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 90s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 90s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 90s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 90s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tweenr amd64 2.0.3-1 [410 kB] 90s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 90s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-systemfonts amd64 1.2.1-1 [347 kB] 90s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 90s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggforce amd64 0.4.2-1 [1777 kB] 90s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 90s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 90s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggthemes all 5.1.0-1 [434 kB] 90s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] 90s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 90s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB] 90s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sftime all 0.2-0-6 [168 kB] 90s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB] 90s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-intervals amd64 0.15.5-1 [602 kB] 90s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spacetime all 1.3-2-2 [2775 kB] 90s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stars all 0.6-7-1 [4411 kB] 90s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gstat amd64 2.1-2-1 [2335 kB] 90s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.50+dfsg-1 [568 kB] 90s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 90s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 90s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 90s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 90s Get:248 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 90s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 90s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB] 90s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lwgeom amd64 0.2-14-1 [463 kB] 90s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-maps amd64 3.4.2-1 [2359 kB] 90s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 91s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB] 91s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 91s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-maxlik all 1.5-2.1-1 [1083 kB] 91s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rnetcdf amd64 2.9-1-1build2 [233 kB] 91s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 91s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ncmeta all 0.3.6-1 [360 kB] 91s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 91s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 91s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pcict amd64 0.5-4.4-1 [94.4 kB] 91s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 91s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 91s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 91s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 91s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rdpack all 2.6.2-1 [757 kB] 91s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plm all 2.6-5-1 [1815 kB] 91s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 91s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-randomforest amd64 4.7-1.2-1 [216 kB] 91s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.54-1 [147 kB] 91s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 91s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 91s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 91s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 91s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.9.1+dfsg-1 [3111 kB] 91s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 91s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 91s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 91s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.utils amd64 3.1-2-1 [383 kB] 91s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.data all 3.1-4-1 [4047 kB] 91s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.geom amd64 3.2-9-2 [3946 kB] 91s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.random amd64 3.2-3-1 [1169 kB] 91s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] 91s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB] 91s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.explore amd64 3.2-7-1 [3432 kB] 91s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.model amd64 3.2-11-1 [3385 kB] 91s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.linnet amd64 3.1-5-1 [1468 kB] 91s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat amd64 3.0-8-1 [3881 kB] 91s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-1 [150 kB] 91s Get:291 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 91s Get:292 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 92s Preconfiguring packages ... 92s Fetched 299 MB in 3s (110 MB/s) 92s Selecting previously unselected package fonts-dejavu-mono. 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108876 files and directories currently installed.) 92s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 92s Unpacking fonts-dejavu-mono (2.37-8) ... 92s Selecting previously unselected package fonts-dejavu-core. 92s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 92s Unpacking fonts-dejavu-core (2.37-8) ... 92s Selecting previously unselected package fontconfig-config. 92s Preparing to unpack .../002-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 93s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 93s Selecting previously unselected package libfontconfig1:amd64. 93s Preparing to unpack .../003-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 93s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 93s Selecting previously unselected package fontconfig. 93s Preparing to unpack .../004-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ... 93s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 93s Selecting previously unselected package fonts-font-awesome. 93s Preparing to unpack .../005-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 93s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 93s Selecting previously unselected package fonts-glyphicons-halflings. 93s Preparing to unpack .../006-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 93s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 93s Selecting previously unselected package fonts-mathjax. 93s Preparing to unpack .../007-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 93s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 93s Selecting previously unselected package gdal-data. 93s Preparing to unpack .../008-gdal-data_3.10.1+dfsg-1build2_all.deb ... 93s Unpacking gdal-data (3.10.1+dfsg-1build2) ... 93s Selecting previously unselected package gdal-plugins:amd64. 93s Preparing to unpack .../009-gdal-plugins_3.10.1+dfsg-1build2_amd64.deb ... 93s Unpacking gdal-plugins:amd64 (3.10.1+dfsg-1build2) ... 93s Selecting previously unselected package javascript-common. 93s Preparing to unpack .../010-javascript-common_11+nmu1_all.deb ... 93s Unpacking javascript-common (11+nmu1) ... 93s Selecting previously unselected package libabsl20230802:amd64. 93s Preparing to unpack .../011-libabsl20230802_20230802.1-4ubuntu2_amd64.deb ... 93s Unpacking libabsl20230802:amd64 (20230802.1-4ubuntu2) ... 93s Selecting previously unselected package libaec0:amd64. 93s Preparing to unpack .../012-libaec0_1.1.3-1_amd64.deb ... 93s Unpacking libaec0:amd64 (1.1.3-1) ... 93s Selecting previously unselected package libaom3:amd64. 93s Preparing to unpack .../013-libaom3_3.11.0-1_amd64.deb ... 93s Unpacking libaom3:amd64 (3.11.0-1) ... 93s Selecting previously unselected package libblas3:amd64. 93s Preparing to unpack .../014-libblas3_3.12.0-4_amd64.deb ... 93s Unpacking libblas3:amd64 (3.12.0-4) ... 93s Selecting previously unselected package libgfortran5:amd64. 93s Preparing to unpack .../015-libgfortran5_14.2.0-13ubuntu1_amd64.deb ... 93s Unpacking libgfortran5:amd64 (14.2.0-13ubuntu1) ... 93s Selecting previously unselected package liblapack3:amd64. 93s Preparing to unpack .../016-liblapack3_3.12.0-4_amd64.deb ... 93s Unpacking liblapack3:amd64 (3.12.0-4) ... 94s Selecting previously unselected package libarpack2t64:amd64. 94s Preparing to unpack .../017-libarpack2t64_3.9.1-4_amd64.deb ... 94s Unpacking libarpack2t64:amd64 (3.9.1-4) ... 94s Selecting previously unselected package libarmadillo14. 94s Preparing to unpack .../018-libarmadillo14_1%3a14.2.1+dfsg-1_amd64.deb ... 94s Unpacking libarmadillo14 (1:14.2.1+dfsg-1) ... 94s Selecting previously unselected package libdav1d7:amd64. 94s Preparing to unpack .../019-libdav1d7_1.5.1-1_amd64.deb ... 94s Unpacking libdav1d7:amd64 (1.5.1-1) ... 94s Selecting previously unselected package libgav1-1:amd64. 94s Preparing to unpack .../020-libgav1-1_0.19.0-3_amd64.deb ... 94s Unpacking libgav1-1:amd64 (0.19.0-3) ... 94s Selecting previously unselected package librav1e0.7:amd64. 94s Preparing to unpack .../021-librav1e0.7_0.7.1-9_amd64.deb ... 94s Unpacking librav1e0.7:amd64 (0.7.1-9) ... 94s Selecting previously unselected package libsvtav1enc2:amd64. 94s Preparing to unpack .../022-libsvtav1enc2_2.3.0+dfsg-1_amd64.deb ... 94s Unpacking libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... 94s Selecting previously unselected package libjpeg-turbo8:amd64. 94s Preparing to unpack .../023-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 94s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 94s Selecting previously unselected package libjpeg8:amd64. 94s Preparing to unpack .../024-libjpeg8_8c-2ubuntu11_amd64.deb ... 94s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 94s Selecting previously unselected package libyuv0:amd64. 94s Preparing to unpack .../025-libyuv0_0.0.1899.20250103-1_amd64.deb ... 94s Unpacking libyuv0:amd64 (0.0.1899.20250103-1) ... 94s Selecting previously unselected package libavif16:amd64. 94s Preparing to unpack .../026-libavif16_1.1.1-1ubuntu1_amd64.deb ... 94s Unpacking libavif16:amd64 (1.1.1-1ubuntu1) ... 94s Selecting previously unselected package libsnappy1v5:amd64. 94s Preparing to unpack .../027-libsnappy1v5_1.2.1-1_amd64.deb ... 94s Unpacking libsnappy1v5:amd64 (1.2.1-1) ... 94s Selecting previously unselected package libblosc1:amd64. 94s Preparing to unpack .../028-libblosc1_1.21.5+ds-1build1_amd64.deb ... 94s Unpacking libblosc1:amd64 (1.21.5+ds-1build1) ... 94s Selecting previously unselected package libpixman-1-0:amd64. 94s Preparing to unpack .../029-libpixman-1-0_0.44.0-3_amd64.deb ... 94s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 94s Selecting previously unselected package libxcb-render0:amd64. 94s Preparing to unpack .../030-libxcb-render0_1.17.0-2_amd64.deb ... 94s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 94s Selecting previously unselected package libxcb-shm0:amd64. 94s Preparing to unpack .../031-libxcb-shm0_1.17.0-2_amd64.deb ... 94s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 94s Selecting previously unselected package libxrender1:amd64. 94s Preparing to unpack .../032-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 94s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 94s Selecting previously unselected package libcairo2:amd64. 94s Preparing to unpack .../033-libcairo2_1.18.2-2_amd64.deb ... 94s Unpacking libcairo2:amd64 (1.18.2-2) ... 94s Selecting previously unselected package libcfitsio10t64:amd64. 94s Preparing to unpack .../034-libcfitsio10t64_4.5.0-5_amd64.deb ... 94s Unpacking libcfitsio10t64:amd64 (4.5.0-5) ... 94s Selecting previously unselected package libdatrie1:amd64. 94s Preparing to unpack .../035-libdatrie1_0.2.13-3build1_amd64.deb ... 94s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 94s Selecting previously unselected package libde265-0:amd64. 94s Preparing to unpack .../036-libde265-0_1.0.15-1build4_amd64.deb ... 94s Unpacking libde265-0:amd64 (1.0.15-1build4) ... 94s Selecting previously unselected package libdeflate0:amd64. 94s Preparing to unpack .../037-libdeflate0_1.23-1_amd64.deb ... 94s Unpacking libdeflate0:amd64 (1.23-1) ... 94s Selecting previously unselected package libfyba0t64:amd64. 94s Preparing to unpack .../038-libfyba0t64_4.1.1-11build1_amd64.deb ... 94s Unpacking libfyba0t64:amd64 (4.1.1-11build1) ... 94s Selecting previously unselected package libminizip1t64:amd64. 94s Preparing to unpack .../039-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 94s Unpacking libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 94s Selecting previously unselected package libfreexl1:amd64. 94s Preparing to unpack .../040-libfreexl1_2.0.0-1build2_amd64.deb ... 94s Unpacking libfreexl1:amd64 (2.0.0-1build2) ... 94s Selecting previously unselected package libgeos3.13.0:amd64. 94s Preparing to unpack .../041-libgeos3.13.0_3.13.0-1_amd64.deb ... 94s Unpacking libgeos3.13.0:amd64 (3.13.0-1) ... 95s Selecting previously unselected package libgeos-c1t64:amd64. 95s Preparing to unpack .../042-libgeos-c1t64_3.13.0-1_amd64.deb ... 95s Unpacking libgeos-c1t64:amd64 (3.13.0-1) ... 95s Selecting previously unselected package proj-data. 95s Preparing to unpack .../043-proj-data_9.5.1-1_all.deb ... 95s Unpacking proj-data (9.5.1-1) ... 95s Selecting previously unselected package libjbig0:amd64. 95s Preparing to unpack .../044-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 95s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 95s Selecting previously unselected package liblerc4:amd64. 95s Preparing to unpack .../045-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 95s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 95s Selecting previously unselected package libsharpyuv0:amd64. 95s Preparing to unpack .../046-libsharpyuv0_1.5.0-0.1_amd64.deb ... 95s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 95s Selecting previously unselected package libwebp7:amd64. 95s Preparing to unpack .../047-libwebp7_1.5.0-0.1_amd64.deb ... 95s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 95s Selecting previously unselected package libtiff6:amd64. 95s Preparing to unpack .../048-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 95s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 95s Selecting previously unselected package libproj25:amd64. 95s Preparing to unpack .../049-libproj25_9.5.1-1_amd64.deb ... 95s Unpacking libproj25:amd64 (9.5.1-1) ... 95s Selecting previously unselected package libgeotiff5:amd64. 95s Preparing to unpack .../050-libgeotiff5_1.7.3-1_amd64.deb ... 95s 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Selecting previously unselected package r-cran-r6. 100s Preparing to unpack .../137-r-cran-r6_2.5.1-1_all.deb ... 100s Unpacking r-cran-r6 (2.5.1-1) ... 100s Selecting previously unselected package r-cran-fansi. 100s Preparing to unpack .../138-r-cran-fansi_1.0.5-1_amd64.deb ... 100s Unpacking r-cran-fansi (1.0.5-1) ... 100s Selecting previously unselected package r-cran-pkgconfig. 100s Preparing to unpack .../139-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 100s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 100s Selecting previously unselected package r-cran-tibble. 100s Preparing to unpack .../140-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 100s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 100s Selecting previously unselected package r-cran-withr. 100s Preparing to unpack .../141-r-cran-withr_3.0.2+dfsg-1_all.deb ... 100s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 100s Selecting previously unselected package r-cran-tidyselect. 100s Preparing to unpack .../142-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 100s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 100s Selecting previously unselected package r-cran-dplyr. 100s Preparing to unpack .../143-r-cran-dplyr_1.1.4-4_amd64.deb ... 100s Unpacking r-cran-dplyr (1.1.4-4) ... 100s Selecting previously unselected package r-cran-purrr. 100s Preparing to unpack .../144-r-cran-purrr_1.0.2-1_amd64.deb ... 100s Unpacking r-cran-purrr (1.0.2-1) ... 100s Selecting previously unselected package r-cran-mass. 100s Preparing to unpack .../145-r-cran-mass_7.3-64-1_amd64.deb ... 100s Unpacking r-cran-mass (7.3-64-1) ... 100s Selecting previously unselected package r-cran-class. 101s Preparing to unpack .../146-r-cran-class_7.3-23-1_amd64.deb ... 101s Unpacking r-cran-class (7.3-23-1) ... 101s Selecting previously unselected package r-cran-proxy. 101s Preparing to unpack .../147-r-cran-proxy_0.4-27-1_amd64.deb ... 101s Unpacking r-cran-proxy (0.4-27-1) ... 101s Selecting previously unselected package r-cran-e1071. 101s Preparing to unpack .../148-r-cran-e1071_1.7-16-1_amd64.deb ... 101s Unpacking r-cran-e1071 (1.7-16-1) ... 101s Selecting previously unselected package r-cran-kernsmooth. 101s Preparing to unpack .../149-r-cran-kernsmooth_2.23-26-1_amd64.deb ... 101s Unpacking r-cran-kernsmooth (2.23-26-1) ... 101s Selecting previously unselected package r-cran-classint. 101s Preparing to unpack .../150-r-cran-classint_0.4-11+dfsg-1_amd64.deb ... 101s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 101s Selecting previously unselected package r-cran-dbi. 101s Preparing to unpack .../151-r-cran-dbi_1.2.3-1_all.deb ... 101s Unpacking r-cran-dbi (1.2.3-1) ... 101s Selecting previously unselected package r-cran-pkgkitten. 101s Preparing to unpack .../152-r-cran-pkgkitten_0.2.4-1_all.deb ... 101s Unpacking r-cran-pkgkitten (0.2.4-1) ... 101s Selecting previously unselected package r-cran-rcpp. 101s Preparing to unpack .../153-r-cran-rcpp_1.0.14-1_amd64.deb ... 101s Unpacking r-cran-rcpp (1.0.14-1) ... 101s Selecting previously unselected package r-cran-wk. 101s Preparing to unpack .../154-r-cran-wk_0.9.4-1_amd64.deb ... 101s Unpacking r-cran-wk (0.9.4-1) ... 101s Selecting previously unselected package r-cran-s2. 101s Preparing to unpack .../155-r-cran-s2_1.1.7-1_amd64.deb ... 101s Unpacking r-cran-s2 (1.1.7-1) ... 101s Selecting previously unselected package r-cran-units. 101s Preparing to unpack .../156-r-cran-units_0.8-5+dfsg-1_amd64.deb ... 101s Unpacking r-cran-units (0.8-5+dfsg-1) ... 101s Selecting previously unselected package r-cran-sf. 101s Preparing to unpack .../157-r-cran-sf_1.0-19+dfsg-1_amd64.deb ... 101s Unpacking r-cran-sf (1.0-19+dfsg-1) ... 101s Selecting previously unselected package r-cran-areal. 101s Preparing to unpack .../158-r-cran-areal_0.1.8+dfsg-2_all.deb ... 101s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 101s Selecting previously unselected package r-cran-sys. 101s Preparing to unpack .../159-r-cran-sys_3.4.3-1_amd64.deb ... 101s Unpacking r-cran-sys (3.4.3-1) ... 101s Selecting previously unselected package r-cran-askpass. 101s Preparing to unpack .../160-r-cran-askpass_1.2.1-1_amd64.deb ... 101s Unpacking r-cran-askpass (1.2.1-1) ... 101s Selecting previously unselected package r-cran-base64enc. 101s Preparing to unpack .../161-r-cran-base64enc_0.1-3-3_amd64.deb ... 101s Unpacking r-cran-base64enc (0.1-3-3) ... 101s Selecting previously unselected package r-cran-bdsmatrix. 101s Preparing to unpack .../162-r-cran-bdsmatrix_1.3-7-1_amd64.deb ... 101s Unpacking r-cran-bdsmatrix (1.3-7-1) ... 101s Selecting previously unselected package r-cran-brio. 101s Preparing to unpack .../163-r-cran-brio_1.1.5-1_amd64.deb ... 101s Unpacking r-cran-brio (1.1.5-1) ... 101s Selecting previously unselected package r-cran-fastmap. 101s Preparing to unpack .../164-r-cran-fastmap_1.2.0-1_amd64.deb ... 101s Unpacking r-cran-fastmap (1.2.0-1) ... 101s Selecting previously unselected package r-cran-cachem. 101s Preparing to unpack .../165-r-cran-cachem_1.1.0-1_amd64.deb ... 101s Unpacking r-cran-cachem (1.1.0-1) ... 102s Selecting previously unselected package r-cran-digest. 102s Preparing to unpack .../166-r-cran-digest_0.6.37-1_amd64.deb ... 102s Unpacking r-cran-digest (0.6.37-1) ... 102s Selecting previously unselected package r-cran-htmltools. 102s Preparing to unpack .../167-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 102s Unpacking r-cran-htmltools (0.5.8.1-1) ... 102s Selecting previously unselected package r-cran-jquerylib. 102s Preparing to unpack .../168-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 102s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 102s Selecting previously unselected package r-cran-jsonlite. 102s Preparing to unpack .../169-r-cran-jsonlite_1.8.9+dfsg-1_amd64.deb ... 102s Unpacking r-cran-jsonlite (1.8.9+dfsg-1) ... 102s Selecting previously unselected package r-cran-memoise. 102s Preparing to unpack .../170-r-cran-memoise_2.0.1-1_all.deb ... 102s Unpacking r-cran-memoise (2.0.1-1) ... 102s Selecting previously unselected package r-cran-mime. 102s Preparing to unpack .../171-r-cran-mime_0.12-2_amd64.deb ... 102s Unpacking r-cran-mime (0.12-2) ... 102s Selecting previously unselected package r-cran-fs. 102s Preparing to unpack .../172-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 102s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 102s Selecting previously unselected package r-cran-rappdirs. 102s Preparing to unpack .../173-r-cran-rappdirs_0.3.3-1_amd64.deb ... 102s Unpacking r-cran-rappdirs (0.3.3-1) ... 102s Selecting previously unselected package r-cran-sass. 102s Preparing to unpack .../174-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 102s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 102s Selecting previously unselected package r-cran-bslib. 102s Preparing to unpack .../175-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 102s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 102s Selecting previously unselected package r-cran-cairo. 102s Preparing to unpack .../176-r-cran-cairo_1.6-2-1_amd64.deb ... 102s Unpacking r-cran-cairo (1.6-2-1) ... 102s Selecting previously unselected package r-cran-ps. 102s Preparing to unpack .../177-r-cran-ps_1.8.1-1_amd64.deb ... 102s Unpacking r-cran-ps (1.8.1-1) ... 102s Selecting previously unselected package r-cran-processx. 102s Preparing to unpack .../178-r-cran-processx_3.8.5-1_amd64.deb ... 102s Unpacking r-cran-processx (3.8.5-1) ... 102s Selecting previously unselected package r-cran-callr. 102s Preparing to unpack .../179-r-cran-callr_3.7.6-1_all.deb ... 102s Unpacking r-cran-callr (3.7.6-1) ... 102s Selecting previously unselected package r-cran-cluster. 102s Preparing to unpack .../180-r-cran-cluster_2.1.8-1_amd64.deb ... 102s Unpacking r-cran-cluster (2.1.8-1) ... 102s Selecting previously unselected package r-cran-clue. 102s Preparing to unpack .../181-r-cran-clue_0.3-66-1_amd64.deb ... 102s Unpacking r-cran-clue (0.3-66-1) ... 102s Selecting previously unselected package r-cran-codetools. 102s Preparing to unpack .../182-r-cran-codetools_0.2-20-1_all.deb ... 102s Unpacking r-cran-codetools (0.2-20-1) ... 102s Selecting previously unselected package r-cran-collapse. 102s Preparing to unpack .../183-r-cran-collapse_2.0.19-1_amd64.deb ... 102s Unpacking r-cran-collapse (2.0.19-1) ... 102s Selecting previously unselected package r-cran-colorspace. 102s Preparing to unpack .../184-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 102s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 103s Selecting previously unselected package r-cran-commonmark. 103s Preparing to unpack .../185-r-cran-commonmark_1.9.2-2_amd64.deb ... 103s Unpacking r-cran-commonmark (1.9.2-2) ... 103s Selecting previously unselected package r-cran-lazyeval. 103s Preparing to unpack .../186-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 103s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 103s Selecting previously unselected package r-cran-rex. 103s Preparing to unpack .../187-r-cran-rex_1.2.1-1_all.deb ... 103s Unpacking r-cran-rex (1.2.1-1) ... 103s Selecting previously unselected package r-cran-curl. 103s Preparing to unpack .../188-r-cran-curl_6.1.0+dfsg-1_amd64.deb ... 103s Unpacking r-cran-curl (6.1.0+dfsg-1) ... 103s Selecting previously unselected package r-cran-openssl. 103s Preparing to unpack .../189-r-cran-openssl_2.2.0+dfsg-1_amd64.deb ... 103s Unpacking r-cran-openssl (2.2.0+dfsg-1) ... 103s Selecting previously unselected package r-cran-httr. 103s Preparing to unpack .../190-r-cran-httr_1.4.7+dfsg-1_all.deb ... 103s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 103s Selecting previously unselected package r-cran-crayon. 103s Preparing to unpack .../191-r-cran-crayon_1.5.3-1_all.deb ... 103s Unpacking r-cran-crayon (1.5.3-1) ... 103s Selecting previously unselected package r-cran-yaml. 103s Preparing to unpack .../192-r-cran-yaml_2.3.10-1_amd64.deb ... 103s Unpacking r-cran-yaml (2.3.10-1) ... 103s Selecting previously unselected package r-cran-covr. 103s Preparing to unpack .../193-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 103s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 103s Selecting previously unselected package r-cran-cpp11. 103s Preparing to unpack .../194-r-cran-cpp11_0.5.1-1_all.deb ... 103s Unpacking r-cran-cpp11 (0.5.1-1) ... 103s Selecting previously unselected package r-cran-cubelyr. 103s Preparing to unpack .../195-r-cran-cubelyr_1.0.2-1_all.deb ... 103s Unpacking r-cran-cubelyr (1.0.2-1) ... 103s Selecting previously unselected package r-cran-deldir. 103s Preparing to unpack .../196-r-cran-deldir_2.0-4-1build1_amd64.deb ... 103s Unpacking r-cran-deldir (2.0-4-1build1) ... 103s Selecting previously unselected package r-cran-desc. 103s Preparing to unpack .../197-r-cran-desc_1.4.3-1_all.deb ... 103s Unpacking r-cran-desc (1.4.3-1) ... 103s Selecting previously unselected package r-cran-diffobj. 103s Preparing to unpack .../198-r-cran-diffobj_0.3.5-1_amd64.deb ... 103s Unpacking r-cran-diffobj (0.3.5-1) ... 103s Selecting previously unselected package r-cran-evaluate. 103s Preparing to unpack .../199-r-cran-evaluate_1.0.3-1_all.deb ... 103s Unpacking r-cran-evaluate (1.0.3-1) ... 103s Selecting previously unselected package r-cran-lattice. 103s Preparing to unpack .../200-r-cran-lattice_0.22-6-1_amd64.deb ... 103s Unpacking r-cran-lattice (0.22-6-1) ... 103s Selecting previously unselected package r-cran-sp. 103s Preparing to unpack .../201-r-cran-sp_1%3a2.1-4+dfsg-1_amd64.deb ... 103s Unpacking r-cran-sp (1:2.1-4+dfsg-1) ... 103s Selecting previously unselected package r-cran-terra. 103s Preparing to unpack .../202-r-cran-terra_1.8-10-1_amd64.deb ... 103s Unpacking r-cran-terra (1.8-10-1) ... 103s Selecting previously unselected package r-cran-raster. 104s Preparing to unpack .../203-r-cran-raster_3.6-31-1_amd64.deb ... 104s Unpacking r-cran-raster (3.6-31-1) ... 104s Selecting previously unselected package r-cran-exactextractr. 104s Preparing to unpack .../204-r-cran-exactextractr_0.10.0-1build2_amd64.deb ... 104s Unpacking r-cran-exactextractr (0.10.0-1build2) ... 104s Selecting previously unselected package r-cran-farver. 104s Preparing to unpack .../205-r-cran-farver_2.1.2-1_amd64.deb ... 104s Unpacking r-cran-farver (2.1.2-1) ... 104s Selecting previously unselected package r-cran-fnn. 104s Preparing to unpack .../206-r-cran-fnn_1.1.4.1-1_amd64.deb ... 104s Unpacking r-cran-fnn (1.1.4.1-1) ... 104s Selecting previously unselected package r-cran-fontawesome. 104s Preparing to unpack .../207-r-cran-fontawesome_0.5.3-1_all.deb ... 104s Unpacking r-cran-fontawesome (0.5.3-1) ... 104s Selecting previously unselected package r-cran-formula. 104s Preparing to unpack .../208-r-cran-formula_1.2-5-1_all.deb ... 104s Unpacking r-cran-formula (1.2-5-1) ... 104s Selecting previously unselected package r-cran-globals. 104s Preparing to unpack .../209-r-cran-globals_0.16.3-1_all.deb ... 104s Unpacking r-cran-globals (0.16.3-1) ... 104s Selecting previously unselected package r-cran-listenv. 104s Preparing to unpack .../210-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 104s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 104s Selecting previously unselected package r-cran-parallelly. 104s Preparing to unpack .../211-r-cran-parallelly_1.41.0-1_amd64.deb ... 104s Unpacking r-cran-parallelly (1.41.0-1) ... 104s Selecting previously unselected package r-cran-future. 104s Preparing to unpack .../212-r-cran-future_1.34.0+dfsg-1_all.deb ... 104s Unpacking r-cran-future (1.34.0+dfsg-1) ... 104s Selecting previously unselected package r-cran-future.apply. 104s Preparing to unpack .../213-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 104s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 104s Selecting previously unselected package r-cran-gtable. 104s Preparing to unpack .../214-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 104s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 104s Selecting previously unselected package r-cran-isoband. 104s Preparing to unpack .../215-r-cran-isoband_0.2.7-1_amd64.deb ... 104s Unpacking r-cran-isoband (0.2.7-1) ... 104s Selecting previously unselected package r-cran-nlme. 104s Preparing to unpack .../216-r-cran-nlme_3.1.167-1_amd64.deb ... 104s Unpacking r-cran-nlme (3.1.167-1) ... 104s Selecting previously unselected package r-cran-matrix. 104s Preparing to unpack .../217-r-cran-matrix_1.7-2-1_amd64.deb ... 104s Unpacking r-cran-matrix (1.7-2-1) ... 104s Selecting previously unselected package r-cran-mgcv. 104s Preparing to unpack .../218-r-cran-mgcv_1.9-1-1_amd64.deb ... 104s Unpacking r-cran-mgcv (1.9-1-1) ... 104s Selecting previously unselected package r-cran-labeling. 104s Preparing to unpack .../219-r-cran-labeling_0.4.3-1_all.deb ... 104s Unpacking r-cran-labeling (0.4.3-1) ... 104s Selecting previously unselected package r-cran-munsell. 105s Preparing to unpack .../220-r-cran-munsell_0.5.1-1_all.deb ... 105s Unpacking r-cran-munsell (0.5.1-1) ... 105s Selecting previously unselected package r-cran-rcolorbrewer. 105s Preparing to unpack .../221-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 105s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 105s Selecting previously unselected package r-cran-viridislite. 105s Preparing to unpack .../222-r-cran-viridislite_0.4.2-2_all.deb ... 105s Unpacking r-cran-viridislite (0.4.2-2) ... 105s Selecting previously unselected package r-cran-scales. 105s Preparing to unpack .../223-r-cran-scales_1.3.0-1_all.deb ... 105s Unpacking r-cran-scales (1.3.0-1) ... 105s Selecting previously unselected package r-cran-ggplot2. 105s Preparing to unpack .../224-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 105s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 105s Selecting previously unselected package r-cran-tweenr. 105s Preparing to unpack .../225-r-cran-tweenr_2.0.3-1_amd64.deb ... 105s Unpacking r-cran-tweenr (2.0.3-1) ... 105s Selecting previously unselected package r-cran-polyclip. 105s Preparing to unpack .../226-r-cran-polyclip_1.10-7-1_amd64.deb ... 105s Unpacking r-cran-polyclip (1.10-7-1) ... 105s Selecting previously unselected package r-cran-systemfonts. 105s Preparing to unpack .../227-r-cran-systemfonts_1.2.1-1_amd64.deb ... 105s Unpacking r-cran-systemfonts (1.2.1-1) ... 105s Selecting previously unselected package r-cran-rcppeigen. 105s Preparing to unpack .../228-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 105s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 105s Selecting previously unselected package r-cran-ggforce. 105s Preparing to unpack .../229-r-cran-ggforce_0.4.2-1_amd64.deb ... 105s Unpacking r-cran-ggforce (0.4.2-1) ... 105s Selecting previously unselected package r-cran-stringi. 105s Preparing to unpack .../230-r-cran-stringi_1.8.4-1build1_amd64.deb ... 105s Unpacking r-cran-stringi (1.8.4-1build1) ... 105s Selecting previously unselected package r-cran-stringr. 105s Preparing to unpack .../231-r-cran-stringr_1.5.1-1_all.deb ... 105s Unpacking r-cran-stringr (1.5.1-1) ... 105s Selecting previously unselected package r-cran-ggthemes. 105s Preparing to unpack .../232-r-cran-ggthemes_5.1.0-1_all.deb ... 105s Unpacking r-cran-ggthemes (5.1.0-1) ... 105s Selecting previously unselected package r-cran-goftest. 105s Preparing to unpack .../233-r-cran-goftest_1.2-3-1_amd64.deb ... 105s Unpacking r-cran-goftest (1.2-3-1) ... 105s Selecting previously unselected package r-cran-gridextra. 105s Preparing to unpack .../234-r-cran-gridextra_2.3-3build1_all.deb ... 105s Unpacking r-cran-gridextra (2.3-3build1) ... 105s Selecting previously unselected package r-cran-zoo. 105s Preparing to unpack .../235-r-cran-zoo_1.8-12-2_amd64.deb ... 105s Unpacking r-cran-zoo (1.8-12-2) ... 105s Selecting previously unselected package r-cran-sftime. 106s Preparing to unpack .../236-r-cran-sftime_0.2-0-6_all.deb ... 106s Unpacking r-cran-sftime (0.2-0-6) ... 106s Selecting previously unselected package r-cran-xts. 106s Preparing to unpack .../237-r-cran-xts_0.14.1-1_amd64.deb ... 106s Unpacking r-cran-xts (0.14.1-1) ... 106s Selecting previously unselected package r-cran-intervals. 106s Preparing to unpack .../238-r-cran-intervals_0.15.5-1_amd64.deb ... 106s Unpacking r-cran-intervals (0.15.5-1) ... 106s Selecting previously unselected package r-cran-spacetime. 106s Preparing to unpack .../239-r-cran-spacetime_1.3-2-2_all.deb ... 106s Unpacking r-cran-spacetime (1.3-2-2) ... 106s Selecting previously unselected package r-cran-stars. 106s Preparing to unpack .../240-r-cran-stars_0.6-7-1_all.deb ... 106s Unpacking r-cran-stars (0.6-7-1) ... 106s Selecting previously unselected package r-cran-gstat. 106s Preparing to unpack .../241-r-cran-gstat_2.1-2-1_amd64.deb ... 106s Unpacking r-cran-gstat (2.1-2-1) ... 106s Selecting previously unselected package r-cran-xfun. 106s Preparing to unpack .../242-r-cran-xfun_0.50+dfsg-1_amd64.deb ... 106s Unpacking r-cran-xfun (0.50+dfsg-1) ... 106s Selecting previously unselected package r-cran-highr. 106s Preparing to unpack .../243-r-cran-highr_0.11+dfsg-1_all.deb ... 106s Unpacking r-cran-highr (0.11+dfsg-1) ... 106s Selecting previously unselected package r-cran-later. 106s Preparing to unpack .../244-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 106s Unpacking r-cran-later (1.4.1+dfsg-1) ... 106s Selecting previously unselected package r-cran-promises. 106s Preparing to unpack .../245-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 106s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 106s Selecting previously unselected package r-cran-httpuv. 106s Preparing to unpack .../246-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 106s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 106s Selecting previously unselected package libjs-mathjax. 106s Preparing to unpack .../247-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 106s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 107s Selecting previously unselected package r-cran-knitr. 107s Preparing to unpack .../248-r-cran-knitr_1.49+dfsg-1_all.deb ... 107s Unpacking r-cran-knitr (1.49+dfsg-1) ... 107s Selecting previously unselected package r-cran-lmtest. 107s Preparing to unpack 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package r-cran-maxlik. 108s Preparing to unpack .../255-r-cran-maxlik_1.5-2.1-1_all.deb ... 108s Unpacking r-cran-maxlik (1.5-2.1-1) ... 108s Selecting previously unselected package r-cran-rnetcdf. 108s Preparing to unpack .../256-r-cran-rnetcdf_2.9-1-1build2_amd64.deb ... 108s Unpacking r-cran-rnetcdf (2.9-1-1build2) ... 108s Selecting previously unselected package r-cran-tidyr. 108s Preparing to unpack .../257-r-cran-tidyr_1.3.1-1_amd64.deb ... 108s Unpacking r-cran-tidyr (1.3.1-1) ... 108s Selecting previously unselected package r-cran-ncmeta. 108s Preparing to unpack .../258-r-cran-ncmeta_0.3.6-1_all.deb ... 108s Unpacking r-cran-ncmeta (0.3.6-1) ... 108s Selecting previously unselected package r-cran-ncdfgeom. 108s Preparing to unpack .../259-r-cran-ncdfgeom_1.1.6+dfsg-1_all.deb ... 108s Unpacking r-cran-ncdfgeom (1.1.6+dfsg-1) ... 108s Selecting previously unselected package r-cran-pbapply. 108s Preparing to unpack .../260-r-cran-pbapply_1.7-2-1_all.deb ... 108s Unpacking 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Setting up r-cran-crayon (1.5.3-1) ... 113s Setting up r-cran-labeling (0.4.3-1) ... 113s Setting up r-cran-sourcetools (0.1.7-1-1) ... 113s Setting up r-cran-lattice (0.22-6-1) ... 113s Setting up r-cran-ps (1.8.1-1) ... 113s Setting up r-cran-nlme (3.1.167-1) ... 113s Setting up r-cran-farver (2.1.2-1) ... 113s Setting up r-cran-pbapply (1.7-2-1) ... 113s Setting up r-cran-formula (1.2-5-1) ... 113s Setting up r-cran-intervals (0.15.5-1) ... 113s Setting up r-cran-spatstat.utils (3.1-2-1) ... 113s Setting up r-cran-viridislite (0.4.2-2) ... 113s Setting up r-cran-cluster (2.1.8-1) ... 113s Setting up r-cran-tensor (1.5-4) ... 113s Setting up r-cran-lazyeval (0.2.2-1build1) ... 113s Setting up r-cran-wk (0.9.4-1) ... 113s Setting up r-cran-commonmark (1.9.2-2) ... 113s Setting up r-cran-proxy (0.4-27-1) ... 113s Setting up r-cran-r6 (2.5.1-1) ... 113s Setting up r-cran-pkgkitten (0.2.4-1) ... 113s Setting up r-cran-magrittr (2.0.3-1) ... 113s Setting up r-cran-rappdirs (0.3.3-1) ... 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r-cran-yaml (2.3.10-1) ... 113s Setting up r-cran-evaluate (1.0.3-1) ... 113s Setting up r-cran-dbi (1.2.3-1) ... 113s Setting up r-cran-highr (0.11+dfsg-1) ... 113s Setting up r-cran-fansi (1.0.5-1) ... 113s Setting up r-cran-pcict (0.5-4.4-1) ... 113s Setting up r-cran-mass (7.3-64-1) ... 113s Setting up r-cran-cairo (1.6-2-1) ... 113s Setting up r-cran-mapdata (2.3.1-1) ... 113s Setting up r-cran-collapse (2.0.19-1) ... 113s Setting up r-cran-bdsmatrix (1.3-7-1) ... 113s Setting up r-cran-glue (1.8.0-1) ... 113s Setting up r-cran-xtable (1:1.8-4-2) ... 113s Setting up r-cran-polyclip (1.10-7-1) ... 113s Setting up r-cran-clue (0.3-66-1) ... 113s Setting up r-cran-cli (3.6.3-1) ... 113s Setting up r-cran-rbibutils (2.3-1) ... 113s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 113s Setting up r-cran-rprojroot (2.0.4-2) ... 113s Setting up r-cran-fnn (1.1.4.1-1) ... 113s Setting up r-cran-deldir (2.0-4-1build1) ... 113s Setting up r-cran-goftest (1.2-3-1) ... 113s Setting up r-cran-randomforest (4.7-1.2-1) ... 113s Setting up r-cran-askpass (1.2.1-1) ... 113s Setting up r-cran-fastmap (1.2.0-1) ... 113s Setting up r-cran-jsonlite (1.8.9+dfsg-1) ... 113s Setting up r-cran-rnetcdf (2.9-1-1build2) ... 113s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 113s Setting up r-cran-sp (1:2.1-4+dfsg-1) ... 113s Setting up r-cran-utf8 (1.2.4-1) ... 113s Setting up r-cran-colorspace (2.1-1+dfsg-1) ... 113s Setting up r-cran-parallelly (1.41.0-1) ... 113s Setting up r-cran-stringi (1.8.4-1build1) ... 113s Setting up r-cran-rex (1.2.1-1) ... 113s Setting up r-cran-cpp11 (0.5.1-1) ... 113s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 113s Setting up r-cran-isoband (0.2.7-1) ... 113s Setting up r-cran-waldo (0.6.1-1) ... 113s Setting up r-cran-gtable (0.3.6+dfsg-1) ... 113s Setting up r-cran-zoo (1.8-12-2) ... 113s Setting up r-cran-units (0.8-5+dfsg-1) ... 113s Setting up r-cran-later (1.4.1+dfsg-1) ... 113s Setting up r-cran-matrix (1.7-2-1) ... 113s Setting up r-cran-spatstat.sparse (3.1-0-1) ... 113s Setting up r-cran-htmltools (0.5.8.1-1) ... 113s Setting up r-cran-tinytex (0.54-1) ... 113s Setting up r-cran-kernsmooth (2.23-26-1) ... 113s Setting up r-cran-knitr (1.49+dfsg-1) ... 113s Setting up r-cran-mgcv (1.9-1-1) ... 113s Setting up r-cran-cachem (1.1.0-1) ... 113s Setting up r-cran-lmtest (0.9.40-1) ... 113s Setting up r-cran-sass (0.4.9+dfsg-1) ... 113s Setting up r-cran-globals (0.16.3-1) ... 113s Setting up r-cran-vctrs (0.6.5-1) ... 113s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ... 113s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 113s Setting up r-cran-openssl (2.2.0+dfsg-1) ... 113s Setting up r-cran-misctools (0.6-28-1) ... 113s Setting up r-cran-stringr (1.5.1-1) ... 113s Setting up r-cran-class (7.3-23-1) ... 113s Setting up r-cran-callr (3.7.6-1) ... 113s Setting up r-cran-desc (1.4.3-1) ... 113s Setting up r-cran-munsell (0.5.1-1) ... 113s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 113s Setting up r-cran-sandwich (3.1-1-1) ... 113s Setting up r-cran-fontawesome (0.5.3-1) ... 113s Setting up r-cran-survival (3.8-3-1) ... 113s Setting up r-cran-xts (0.14.1-1) ... 113s Setting up r-cran-rdpack (2.6.2-1) ... 113s Setting up r-cran-tweenr (2.0.3-1) ... 113s Setting up r-cran-future (1.34.0+dfsg-1) ... 113s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 113s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 113s Setting up r-cran-future.apply (1.11.3+dfsg-1) ... 113s Setting up r-cran-systemfonts (1.2.1-1) ... 113s Setting up r-cran-httr (1.4.7+dfsg-1) ... 113s Setting up r-cran-gridextra (2.3-3build1) ... 113s Setting up r-cran-scales (1.3.0-1) ... 113s Setting up r-cran-memoise (2.0.1-1) ... 113s Setting up r-cran-covr (3.6.4+dfsg-1) ... 113s Setting up r-cran-promises (1.3.2+dfsg-1) ... 113s Setting up r-cran-purrr (1.0.2-1) ... 113s Setting up r-cran-e1071 (1.7-16-1) ... 113s Setting up r-cran-spatstat.data (3.1-4-1) ... 113s Setting up r-cran-maxlik (1.5-2.1-1) ... 113s Setting up r-cran-spacetime (1.3-2-2) ... 113s Setting up r-cran-spatstat.geom (3.2-9-2) ... 113s Setting up r-cran-pkgbuild (1.4.6-1) ... 113s Setting up r-cran-dplyr (1.1.4-4) ... 113s Setting up r-cran-cubelyr (1.0.2-1) ... 113s Setting up r-cran-pkgload (1.4.0-1) ... 113s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... 113s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 113s Setting up r-cran-rpart (4.1.24-1) ... 113s Setting up r-cran-spatstat.random (3.2-3-1) ... 113s Setting up r-cran-plm (2.6-5-1) ... 113s Setting up r-cran-viridis (0.6.5-1) ... 113s Setting up r-cran-testthat (3.2.3-1) ... 113s Setting up r-cran-classint (0.4-11+dfsg-1) ... 113s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 113s Setting up r-cran-spatstat.explore (3.2-7-1) ... 113s Setting up r-cran-ggthemes (5.1.0-1) ... 113s Setting up r-cran-tidyr (1.3.1-1) ... 113s Setting up r-cran-ggforce (0.4.2-1) ... 113s Setting up r-cran-spatstat.model (3.2-11-1) ... 113s Setting up r-cran-shiny (1.9.1+dfsg-1) ... 113s Setting up r-cran-ncmeta (0.3.6-1) ... 113s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 113s Setting up r-cran-spatstat.linnet (3.1-5-1) ... 113s Setting up r-cran-spatstat (3.0-8-1) ... 113s Setting up libheif-plugin-aomdec:amd64 (1.19.5-1build1) ... 113s Setting up libheif-plugin-libde265:amd64 (1.19.5-1build1) ... 113s Setting up libheif1:amd64 (1.19.5-1build1) ... 113s Setting up libgdal36:amd64 (3.10.1+dfsg-1build2) ... 113s Setting up r-cran-sf (1.0-19+dfsg-1) ... 113s Setting up r-cran-stars (0.6-7-1) ... 113s Setting up r-cran-sftime (0.2-0-6) ... 113s Setting up r-cran-areal (0.1.8+dfsg-2) ... 113s Setting up r-cran-gstat (2.1-2-1) ... 113s Setting up r-cran-lwgeom (0.2-14-1) ... 113s Setting up r-cran-terra (1.8-10-1) ... 113s Setting up r-cran-ncdfgeom (1.1.6+dfsg-1) ... 113s Setting up r-cran-raster (3.6-31-1) ... 113s Setting up r-cran-exactextractr (0.10.0-1build2) ... 113s Processing triggers for install-info (7.1.1-1) ... 114s Processing triggers for libc-bin (2.40-4ubuntu1) ... 114s Processing triggers for man-db (2.13.0-1) ... 116s autopkgtest [18:43:14]: testbed environment configured for cross-architecture building 116s autopkgtest [18:43:14]: test run-unit-test: [----------------------- 116s BEGIN TEST aggregate.R 116s 116s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 116s Copyright (C) 2024 The R Foundation for Statistical Computing 116s Platform: x86_64-pc-linux-gnu 116s 116s R is free software and comes with ABSOLUTELY NO WARRANTY. 116s You are welcome to redistribute it under certain conditions. 116s Type 'license()' or 'licence()' for distribution details. 116s 116s R is a collaborative project with many contributors. 116s Type 'contributors()' for more information and 116s 'citation()' on how to cite R or R packages in publications. 116s 116s Type 'demo()' for some demos, 'help()' for on-line help, or 116s 'help.start()' for an HTML browser interface to help. 116s Type 'q()' to quit R. 116s 116s > ## IGNORE_RDIFF_BEGIN 116s > library(stars) 116s Loading required package: abind 116s Loading required package: sf 116s Linking to GEOS 3.13.0, GDAL 3.10.1, PROJ 9.5.1; sf_use_s2() is TRUE 117s > ## IGNORE_RDIFF_END 117s > 117s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 117s + data(air) # this loads several datasets in .GlobalEnv 117s + dim(air) 117s + d = st_dimensions(station = st_set_crs(st_as_sfc(stations), 4326), time = dates) 117s + 117s + blocks = st_make_grid(st_as_sfc("POLYGON ((5.871619 47.26986, 15.03811 47.26986, 15.03811 55.05653, 5.871619 55.05653, 5.871619 47.26986))", crs = 4326), 117s + n = c(3,3)) 117s + 117s + print(aq <- st_as_stars(list(PM10 = air), dimensions = d)) 117s + print(a <- aggregate(aq, blocks, mean, na.rm = TRUE)) 117s + } 117s stars object with 2 dimensions and 1 attribute 117s attribute(s): 117s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 117s PM10 0 9.921 14.792 17.69728 21.992 274.333 157659 117s dimension(s): 117s from to offset delta refsys point 117s station 1 70 NA NA WGS 84 TRUE 117s time 1 4383 1998-01-01 1 days Date FALSE 117s values 117s station POINT (9.585911 53.67057),...,POINT (9.446661 49.24068) 117s time NULL 117s stars object with 2 dimensions and 1 attribute 117s attribute(s): 117s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 117s PM10 1 11 15.57425 18.1715 22.17197 183.271 8429 117s dimension(s): 117s from to offset delta refsys point 117s geometry 1 9 NA NA WGS 84 FALSE 117s time 1 4383 1998-01-01 1 days Date FALSE 117s values 117s geometry POLYGON ((5.871619 47.269...,...,POLYGON ((11.98261 52.460... 117s time NULL 117s > 117s > # adapted from ?read_stars: 117s > m = array(1:720, dim = c(x = 10, y = 12, t = 6)) # named dim 117s > st = st_as_stars(m) 117s > attr(st, "dimensions")$y$delta = -1 117s > attr(st, "dimensions")$y$offset = 12 117s > tm = as.Date("2019-02-19") + 1:6 117s > st = st_set_crs(st_set_dimensions(st, 3, values = tm), 4326) 117s > 117s > tmp = tempfile(fileext = ".tif") 117s > write_stars(st, tmp) 117s > 117s > (red <- setNames(read_stars(tmp, RasterIO = list(nXOff = 1, nYOff = 1, nXsize = 10, nYSize = 12, 117s + nBufXSize = 2, nBufYSize = 2)), "foo")) 117s stars object with 3 dimensions and 1 attribute 117s attribute(s): 117s Min. 1st Qu. Median Mean 3rd Qu. Max. 117s foo 33 199.25 365.5 365.5 531.75 698 117s dimension(s): 118s from to offset delta refsys point x/y 118s x 1 2 0 5 WGS 84 FALSE [x] 118s y 1 2 12 -6 WGS 84 FALSE [y] 118s band 1 6 NA NA NA NA 118s > 118s > sfc = st_set_crs(st_as_sfc(red, as_points = FALSE), st_crs(st)) 118s > (a = aggregate(st, st_sf(a = 1, geom = sfc), mean)) 118s stars object with 2 dimensions and 1 attribute 118s attribute(s): 118s Min. 1st Qu. Median Mean 3rd Qu. Max. 118s A1 28 194.25 360.5 360.5 526.75 693 118s dimension(s): 118s from to offset delta refsys point 118s geom 1 4 NA NA WGS 84 FALSE 118s t 1 6 2019-02-20 1 days Date FALSE 118s values 118s geom POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 118s t NULL 118s > (a = aggregate(st, sfc, mean)) 118s stars object with 2 dimensions and 1 attribute 118s attribute(s): 118s Min. 1st Qu. Median Mean 3rd Qu. Max. 118s A1 28 194.25 360.5 360.5 526.75 693 118s dimension(s): 118s from to offset delta refsys point 118s geometry 1 4 NA NA WGS 84 FALSE 118s t 1 6 2019-02-20 1 days Date FALSE 118s values 118s geometry POLYGON ((0 12, 5 12, 5 6...,...,POLYGON ((5 6, 10 6, 10 0... 118s t NULL 118s > 118s > tm0 = as.Date("2019-02-19") + -1:8 118s > (a = aggregate(st, tm0, mean, na.rm = TRUE)) 118s stars object with 3 dimensions and 1 attribute 118s attribute(s): 118s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 118s A1 1 180.75 360.5 360.5 540.25 720 480 118s dimension(s): 118s from to offset delta refsys point x/y 118s time 1 10 2019-02-18 1 days Date NA 118s x 1 10 0 1 WGS 84 FALSE [x] 118s y 1 12 12 -1 WGS 84 FALSE [y] 118s > (a = aggregate(st, "days", mean, na.rm = TRUE)) 118s stars object with 3 dimensions and 1 attribute 118s attribute(s): 118s Min. 1st Qu. Median Mean 3rd Qu. Max. 118s A1 1 180.75 360.5 360.5 540.25 720 118s dimension(s): 118s from to offset delta refsys point x/y 118s time 1 6 2019-02-20 1 days Date NA 118s x 1 10 0 1 WGS 84 FALSE [x] 118s y 1 12 12 -1 WGS 84 FALSE [y] 118s > yd = function(x) as.POSIXlt(x)$yday 118s > (a = aggregate(st, yd, mean, na.rm = TRUE)) 118s stars object with 3 dimensions and 1 attribute 118s attribute(s): 118s Min. 1st Qu. Median Mean 3rd Qu. Max. 118s A1 1 180.75 360.5 360.5 540.25 720 118s dimension(s): 118s from to offset delta refsys point values x/y 118s geometry 1 6 NA NA NA NA 50,...,55 118s x 1 10 0 1 WGS 84 FALSE NULL [x] 118s y 1 12 12 -1 WGS 84 FALSE NULL [y] 118s > 118s > # with "by" geometry not overlapping x 118s > pt = st_point(c(-10,-10)) 118s > (sfc = c(sfc, st_sfc(pt, crs = st_crs(sfc)))) 118s Geometry set for 5 features 118s Geometry type: GEOMETRY 118s Dimension: XY 118s Bounding box: xmin: -10 ymin: -10 xmax: 10 ymax: 12 118s Geodetic CRS: WGS 84 118s POLYGON ((0 12, 5 12, 5 6, 0 6, 0 12)) 118s POLYGON ((5 12, 10 12, 10 6, 5 6, 5 12)) 118s POLYGON ((0 6, 5 6, 5 0, 0 0, 0 6)) 118s POLYGON ((5 6, 10 6, 10 0, 5 0, 5 6)) 118s POINT (-10 -10) 118s > (a = aggregate(st, sfc, mean)) 118s stars object with 2 dimensions and 1 attribute 118s attribute(s): 118s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 118s A1 28 194.25 360.5 360.5 526.75 693 6 118s dimension(s): 118s from to offset delta refsys point 118s geometry 1 5 NA NA WGS 84 FALSE 118s t 1 6 2019-02-20 1 days Date FALSE 118s values 118s geometry POLYGON ((0 12, 5 12, 5 6...,...,POINT (-10 -10) 118s t NULL 118s > (a = aggregate(st, st, mean)) 118s stars object with 2 dimensions and 1 attribute 118s attribute(s): 118s Min. 1st Qu. Median Mean 3rd Qu. Max. 118s A1 1 180.75 360.5 360.5 540.25 720 118s dimension(s): 118s from to offset delta refsys point 118s geometry 1 120 NA NA WGS 84 FALSE 118s t 1 6 2019-02-20 1 days Date FALSE 118s values 118s geometry POLYGON ((0 12, 1 12, 1 1...,...,POLYGON ((9 1, 10 1, 10 0... 118s t NULL 118s > 118s BEGIN TEST align.R 118s 118s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 118s Copyright (C) 2024 The R Foundation for Statistical Computing 118s Platform: x86_64-pc-linux-gnu 118s 118s R is free software and comes with ABSOLUTELY NO WARRANTY. 118s You are welcome to redistribute it under certain conditions. 118s Type 'license()' or 'licence()' for distribution details. 118s 118s R is a collaborative project with many contributors. 118s Type 'contributors()' for more information and 118s 'citation()' on how to cite R or R packages in publications. 118s 118s Type 'demo()' for some demos, 'help()' for on-line help, or 118s 'help.start()' for an HTML browser interface to help. 118s Type 'q()' to quit R. 118s 118s > suppressPackageStartupMessages(library(stars)) 118s > set.seed(1331) 118s > st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1) 119s Geometry set for 1 feature 119s Geometry type: POINT 119s Dimension: XY 119s Bounding box: xmin: 291430.8 ymin: 9111430 xmax: 291430.8 ymax: 9111430 119s Projected CRS: SIRGAS 2000 / UTM zone 25S 119s > b = st_buffer(st_sample(st_as_sfc(st_bbox(L7_ETMs)), 1), 335) 119s POINT (291430.8 9111430) 119s > bba = stars:::st_align(st_bbox(b), st_dimensions(L7_ETMs)) 119s > 119s > plot(L7_ETMs[,,,1], extent = st_buffer(b, 20), reset = FALSE, key.pos = NULL) 119s > plot(b, add = TRUE, col = NA, border = 'red') 119s > plot(st_as_sfc(st_bbox(b)), col = NA, border = 'red', add = TRUE) 119s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 119s > st_bbox(b) 119s xmin ymin xmax ymax 119s 297116.8 9119404.1 297786.8 9120074.1 119s > bba 119s xmin ymin xmax ymax 119s 297098.3 9119392.8 297810.8 9120076.8 119s > 119s > plot(L7_ETMs[,,,1], reset = FALSE, key.pos = NULL) 119s > plot(b, col = 'red', add = TRUE) 119s > plot(st_as_sfc(bba), col = NA, border = 'blue', add = TRUE) 119s > 119s > b0 = st_buffer(b, -100) 119s > L7 = st_as_stars(L7_ETMs)[b0][,,,1] |> st_normalize() 119s > bbb = stars:::st_align(st_bbox(b), st_dimensions(L7)) 119s > plot(L7, extent = st_buffer(b, 120), reset = FALSE, key.pos = NULL) 119s > plot(st_as_sfc(st_bbox(L7)), col = NA, border = 'black', add = TRUE) 119s > plot(st_as_sfc(bbb), col = NA, border = 'blue', add = TRUE) 119s > plot(b, col = NA, border = 'red', add = TRUE) 119s > 119s > all.equal(bbb, bba) 119s [1] TRUE 119s > 119s BEGIN TEST area.R 119s 119s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 119s Copyright (C) 2024 The R Foundation for Statistical Computing 119s Platform: x86_64-pc-linux-gnu 119s 119s R is free software and comes with ABSOLUTELY NO WARRANTY. 119s You are welcome to redistribute it under certain conditions. 119s Type 'license()' or 'licence()' for distribution details. 119s 119s R is a collaborative project with many contributors. 119s Type 'contributors()' for more information and 119s 'citation()' on how to cite R or R packages in publications. 119s 119s Type 'demo()' for some demos, 'help()' for on-line help, or 119s 'help.start()' for an HTML browser interface to help. 119s Type 'q()' to quit R. 119s 119s > suppressPackageStartupMessages(library(stars)) 120s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 120s > x = read_stars(tif) 120s > (a = st_area(x[,1:5,1:5])) 120s stars object with 2 dimensions and 1 attribute 120s attribute(s): 120s Min. 1st Qu. Median Mean 3rd Qu. Max. 120s area [m^2] 812.25 812.25 812.25 812.25 812.25 812.25 120s dimension(s): 120s from to offset delta refsys point x/y 120s x 1 5 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 120s y 1 5 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 120s > 120s > m = matrix(1:20, nrow = 5, ncol = 4) 120s > x = c(0, 0.5, 1, 2, 4, 5) # 6 numbers: boundaries! 120s > y = c(0.3, 0.5, 1, 2, 2.2) # 5 numbers: boundaries! 120s > (r = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 120s stars object with 2 dimensions and 1 attribute 120s attribute(s): 120s Min. 1st Qu. Median Mean 3rd Qu. Max. 120s m 1 5.75 10.5 10.5 15.25 20 120s dimension(s): 120s from to point values x/y 120s x 1 5 FALSE [0,0.5),...,[4,5) [x] 120s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 120s > # image(r, axes = TRUE, col = grey((1:20)/20)) 120s > (a = st_area(r)) 120s Missing coordinate reference system: assuming Cartesian coordinates 120s stars object with 2 dimensions and 1 attribute 120s attribute(s): 120s Min. 1st Qu. Median Mean 3rd Qu. Max. 120s area 0.1 0.2 0.325 0.475 0.5 2 120s dimension(s): 120s from to point values x/y 120s x 1 5 FALSE [0,0.5),...,[4,5) [x] 120s y 1 4 FALSE [0.3,0.5),...,[2,2.2) [y] 120s > #plot(a, axes = TRUE) 120s > 120s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 120s > if (s5p != "") { 120s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 120s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 120s + if (inherits(nit.c[[1]], "units")) 120s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 120s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 120s + st_crs(nit.c) = 4326 120s + print((a <- st_area(nit.c[,1:5,1:5]))) 120s + # plot(a, axes = TRUE, border = NA) 120s + } 120s > 120s BEGIN TEST crop.R 120s 120s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 120s Copyright (C) 2024 The R Foundation for Statistical Computing 120s Platform: x86_64-pc-linux-gnu 120s 120s R is free software and comes with ABSOLUTELY NO WARRANTY. 120s You are welcome to redistribute it under certain conditions. 120s Type 'license()' or 'licence()' for distribution details. 120s 120s R is a collaborative project with many contributors. 120s Type 'contributors()' for more information and 120s 'citation()' on how to cite R or R packages in publications. 120s 120s Type 'demo()' for some demos, 'help()' for on-line help, or 120s 'help.start()' for an HTML browser interface to help. 120s Type 'q()' to quit R. 120s 120s > suppressPackageStartupMessages(library(stars)) 121s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 121s > x = read_stars(tif) 121s > xy = structure(list(x = c(293253.999046018, 296400.196497684), y = c(9113801.64775462, 121s + 9111328.49619133)), .Names = c("x", "y")) 121s > pts = st_as_sf(data.frame(do.call(cbind, xy)), coords = c("x", "y"), crs = st_crs(x)) 121s > image(x, axes = TRUE) 121s > plot(st_as_sfc(st_bbox(pts)), col = NA, add = TRUE) 121s > 121s > bb = st_bbox(pts) 121s > (xx = x[bb]) 121s stars object with 3 dimensions and 1 attribute 121s attribute(s): 121s Min. 1st Qu. Median Mean 3rd Qu. Max. 121s L7_ETMs.tif 3 56 73 70.87303 89 255 121s dimension(s): 121s from to offset delta refsys point x/y 121s x 158 268 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 121s y 245 331 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 121s band 1 6 NA NA NA NA 121s > image(xx) 121s > plot(st_as_sfc(bb), add = TRUE, col = NA) 121s > st_contains(st_as_sfc(st_bbox(xx)), st_as_sfc(st_bbox(pts))) 121s Sparse geometry binary predicate list of length 1, where the predicate 121s was `contains' 121s 1: 1 121s > 121s > image(x) 121s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 121s > buf = st_buffer(st_sfc(pt, crs = st_crs(x)), 1500) 121s > plot(buf, add = TRUE) 121s > 121s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 121s + crs = st_crs(x)) 121s > image(x[buf]) 121s > plot(buf, add = TRUE, col = NA) 121s > image(x[buf,crop=FALSE]) 122s > plot(buf, add = TRUE, col = NA) 122s > 122s > plot(x, rgb = 1:3) 122s > 122s > # #638: 122s > l = st_as_stars(L7_ETMs) 122s > st_bbox(l) |> st_as_sfc() -> bb 122s > (bb + 1e6) |> st_set_crs(st_crs(l)) -> b 122s > st_crop(l, b) 123s stars object with 3 dimensions and 1 attribute 123s attribute(s): 123s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 123s L7_ETMs NA NA NA NaN NA NA 737088 123s dimension(s): 123s from to offset delta refsys point x/y 123s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 123s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 123s band 1 6 NA NA NA NA 123s > st_intersects(b, st_as_sfc(st_bbox(l))) |> as.matrix() 123s Warning message: 123s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 123s [,1] 123s [1,] FALSE 123s > (bb - 1e6) |> st_set_crs(st_crs(l)) -> b 123s > st_crop(l, b) 123s stars object with 3 dimensions and 1 attribute 123s attribute(s): 123s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 123s L7_ETMs NA NA NA NaN NA NA 737088 123s dimension(s): 123s from to offset delta refsys point x/y 123s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 123s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 123s band 1 6 NA NA NA NAWarning message: 123s In st_crop.stars(l, b) : st_crop: bounding boxes of x and y do not overlap 123s 123s > 123s BEGIN TEST curvilinear.R 123s 123s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 123s Copyright (C) 2024 The R Foundation for Statistical Computing 123s Platform: x86_64-pc-linux-gnu 123s 123s R is free software and comes with ABSOLUTELY NO WARRANTY. 123s You are welcome to redistribute it under certain conditions. 123s Type 'license()' or 'licence()' for distribution details. 123s 123s R is a collaborative project with many contributors. 123s Type 'contributors()' for more information and 123s 'citation()' on how to cite R or R packages in publications. 123s 123s Type 'demo()' for some demos, 'help()' for on-line help, or 123s 'help.start()' for an HTML browser interface to help. 123s Type 'q()' to quit R. 123s 123s > suppressPackageStartupMessages(library(stars)) 124s > 124s > s5p = system.file("sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", package = "starsdata") 124s > if (s5p != "") { 124s + 124s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 124s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 124s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 124s + lat = read_stars(lat_ds) 124s + lon = read_stars(lon_ds) 124s + nit = read_stars(nit_ds) 124s + nit[[1]][nit[[1]] > 9e+36] = NA 124s + 124s + ll = setNames(c(lon, lat), c("x", "y")) 124s + nit.c0 = st_as_stars(nit, curvilinear = ll) 124s + 124s + # more direct method: 124s + nit.c = read_stars(s5p, sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 124s + curvilinear = c("//PRODUCT/longitude", "//PRODUCT/latitude"), driver = NULL) 124s + if (inherits(nit.c[[1]], "units")) 124s + nit.c[[1]] = units::drop_units(nit.c[[1]]) 124s + nit.c[[1]][nit.c[[1]] > 9e+36] = NA 124s + all.equal(nit.c0, nit.c) 124s + st_crs(nit.c) = 4326 124s + print(nit.c) 124s + 124s + if (FALSE && capabilities()["png"]) { 124s + png("nit1.png", 800, 800) 124s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 124s + maps::map('world', add = TRUE, col = 'red') 124s + dev.off() 124s + 124s + png("nit2.png", 800, 800) 124s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 124s + maps::map('world', add = TRUE, col = 'red') 124s + dev.off() 124s + 124s + nit.c = stars:::st_downsample(nit.c, 8) 124s + print(nit.c) 124s + 124s + png("nit3.png", 800, 800) 124s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = TRUE, pch = 16) 124s + maps::map('world', add = TRUE, col = 'red') 124s + dev.off() 124s + 124s + png("nit4.png", 800, 800) 124s + plot(nit.c, breaks = "equal", reset = FALSE, axes = TRUE, as_points = FALSE, border = NA) 124s + maps::map('world', add = TRUE, col = 'red') 124s + dev.off() 124s + } 124s + 124s + } 124s > 124s BEGIN TEST datasets.R 124s 124s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 124s Copyright (C) 2024 The R Foundation for Statistical Computing 124s Platform: x86_64-pc-linux-gnu 124s 124s R is free software and comes with ABSOLUTELY NO WARRANTY. 124s You are welcome to redistribute it under certain conditions. 124s Type 'license()' or 'licence()' for distribution details. 124s 124s R is a collaborative project with many contributors. 124s Type 'contributors()' for more information and 124s 'citation()' on how to cite R or R packages in publications. 124s 124s Type 'demo()' for some demos, 'help()' for on-line help, or 124s 'help.start()' for an HTML browser interface to help. 124s Type 'q()' to quit R. 124s 124s > suppressPackageStartupMessages(library(stars)) 125s > bcsd_obs 125s stars_proxy object with 2 attributes in 2 file(s): 125s $foo 125s [1] "[...]/bcsd_obs_1999.nc:pr" 125s 125s $bar 125s [1] "[...]/bcsd_obs_1999.nc:tas" 125s 125s dimension(s): 125s from to offset delta refsys values x/y 125s x 1 81 -85 0.125 NA NULL [x] 125s y 1 33 37.12 -0.125 NA NULL [y] 125s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 125s > L7_ETMs 125s stars_proxy object with 1 attribute in 1 file(s): 125s $L7_ETMs 125s [1] "[...]/L7_ETMs.tif" 125s 125s dimension(s): 125s from to offset delta refsys point x/y 125s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 125s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 125s band 1 6 NA NA NA NA 125s > if (require(starsdata, quietly = TRUE)) { 125s + print(stars_sentinel2) 125s + } 125s > 125s BEGIN TEST dimensions.R 125s 125s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 125s Copyright (C) 2024 The R Foundation for Statistical Computing 125s Platform: x86_64-pc-linux-gnu 125s 125s R is free software and comes with ABSOLUTELY NO WARRANTY. 125s You are welcome to redistribute it under certain conditions. 125s Type 'license()' or 'licence()' for distribution details. 125s 125s R is a collaborative project with many contributors. 125s Type 'contributors()' for more information and 125s 'citation()' on how to cite R or R packages in publications. 125s 125s Type 'demo()' for some demos, 'help()' for on-line help, or 125s 'help.start()' for an HTML browser interface to help. 125s Type 'q()' to quit R. 125s 125s > # https://github.com/r-spatial/stars/issues/295 125s > suppressPackageStartupMessages(library(stars)) 125s > raw <- read_stars(system.file("nc/bcsd_obs_1999.nc", package = "stars")) 125s pr, tas, 125s > foo <- function(x, idx) stats::lowess(idx, x)$y 125s > 125s > timeline <- st_get_dimension_values(raw, "time") 125s > smooth = st_apply(raw, 125s + MARGIN = c("x", "y"), 125s + FUN = foo, 125s + idx = st_get_dimension_values(raw, "time") 125s + ) 126s > 126s > st_set_dimensions(smooth, 126s + which = "foo", 126s + values = st_get_dimension_values(raw, "time"), 126s + names = "time" 126s + ) 126s stars object with 3 dimensions and 2 attributes 126s attribute(s): 126s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 126s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 126s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 126s dimension(s): 126s from to offset delta refsys values x/y 126s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 126s x 1 81 -85 0.125 NA NULL [x] 126s y 1 33 37.12 -0.125 NA NULL [y] 126s > 126s > raw %>% 126s + st_apply(MARGIN = c("x", "y"), FUN = foo, idx = timeline) %>% 126s + st_set_dimensions("foo", st_dimensions(raw)["time"]) 126s stars object with 3 dimensions and 2 attributes 126s attribute(s): 126s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 126s pr 16.133519 70.371665 84.55774 87.72969 101.94830 278.6427 7116 126s tas -2.354958 9.632157 15.32671 14.61650 19.99331 24.7976 7116 126s dimension(s): 126s from to offset delta refsys values x/y 126s time 1 12 NA NA POSIXct 1999-01-31,...,1999-12-31 126s x 1 81 -85 0.125 NA NULL [x] 126s y 1 33 37.12 -0.125 NA NULL [y] 126s > 126s BEGIN TEST downsample.R 126s 126s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 126s Copyright (C) 2024 The R Foundation for Statistical Computing 126s Platform: x86_64-pc-linux-gnu 126s 126s R is free software and comes with ABSOLUTELY NO WARRANTY. 126s You are welcome to redistribute it under certain conditions. 126s Type 'license()' or 'licence()' for distribution details. 126s 126s R is a collaborative project with many contributors. 126s Type 'contributors()' for more information and 126s 'citation()' on how to cite R or R packages in publications. 126s 126s Type 'demo()' for some demos, 'help()' for on-line help, or 126s 'help.start()' for an HTML browser interface to help. 126s Type 'q()' to quit R. 126s 126s > suppressPackageStartupMessages(library(stars)) 127s > m = matrix(1:121, 11, 11) 127s > m 127s [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] 127s [1,] 1 12 23 34 45 56 67 78 89 100 111 127s [2,] 2 13 24 35 46 57 68 79 90 101 112 127s [3,] 3 14 25 36 47 58 69 80 91 102 113 127s [4,] 4 15 26 37 48 59 70 81 92 103 114 127s [5,] 5 16 27 38 49 60 71 82 93 104 115 127s [6,] 6 17 28 39 50 61 72 83 94 105 116 127s [7,] 7 18 29 40 51 62 73 84 95 106 117 127s [8,] 8 19 30 41 52 63 74 85 96 107 118 127s [9,] 9 20 31 42 53 64 75 86 97 108 119 127s [10,] 10 21 32 43 54 65 76 87 98 109 120 127s [11,] 11 22 33 44 55 66 77 88 99 110 121 127s > s = st_as_stars(m) 127s > st_downsample(s, 1) 127s stars object with 2 dimensions and 1 attribute 127s attribute(s): 127s Min. 1st Qu. Median Mean 3rd Qu. Max. 127s A1 1 28.5 61 61 93.5 121 127s dimension(s): 127s from to offset delta point x/y 127s X1 1 6 0 2 FALSE [x] 127s X2 1 6 0 2 FALSE [y] 127s > st_downsample(s, 1)[[1]] 127s [,1] [,2] [,3] [,4] [,5] [,6] 127s [1,] 1 23 45 67 89 111 127s [2,] 3 25 47 69 91 113 127s [3,] 5 27 49 71 93 115 127s [4,] 7 29 51 73 95 117 127s [5,] 9 31 53 75 97 119 127s [6,] 11 33 55 77 99 121 127s > st_downsample(s, 1, offset = 1) 127s stars object with 2 dimensions and 1 attribute 127s attribute(s): 127s Min. 1st Qu. Median Mean 3rd Qu. Max. 127s A1 13 37 61 61 85 109 127s dimension(s): 127s from to offset delta point x/y 127s X1 1 5 1 2 FALSE [x] 127s X2 1 5 1 2 FALSE [y] 127s > st_downsample(s, 1, offset = 1)[[1]] 127s [,1] [,2] [,3] [,4] [,5] 127s [1,] 13 35 57 79 101 127s [2,] 15 37 59 81 103 127s [3,] 17 39 61 83 105 127s [4,] 19 41 63 85 107 127s [5,] 21 43 65 87 109 127s > st_downsample(s, 1, FUN = mean) 127s stars object with 2 dimensions and 1 attribute 127s attribute(s): 127s Min. 1st Qu. Median Mean 3rd Qu. Max. 127s A1 7 31 55 55 79 103 127s dimension(s): 127s from to offset delta point x/y 127s X1 1 5 0 2 FALSE [x] 127s X2 1 5 0 2 FALSE [y] 127s > st_downsample(s, 1, FUN = mean)[[1]] 127s [,1] [,2] [,3] [,4] [,5] 127s [1,] 7 29 51 73 95 127s [2,] 9 31 53 75 97 127s [3,] 11 33 55 77 99 127s [4,] 13 35 57 79 101 127s [5,] 15 37 59 81 103 127s > st_downsample(s, 1, offset = 1, FUN = mean) 127s stars object with 2 dimensions and 1 attribute 127s attribute(s): 127s Min. 1st Qu. Median Mean 3rd Qu. Max. 127s A1 19 43 67 67 91 115 127s dimension(s): 127s from to offset delta point x/y 127s X1 1 5 1 2 FALSE [x] 127s X2 1 5 1 2 FALSE [y] 127s > st_downsample(s, 1, offset = c(0,1), FUN = mean)[[1]] 127s [,1] [,2] [,3] [,4] [,5] 127s [1,] 18 40 62 84 106 127s [2,] 20 42 64 86 108 127s [3,] 22 44 66 88 110 127s [4,] 24 46 68 90 112 127s [5,] 26 48 70 92 114 127s > st_downsample(s, 1, offset = c(0,1)) 127s stars object with 2 dimensions and 1 attribute 127s attribute(s): 127s Min. 1st Qu. Median Mean 3rd Qu. Max. 127s A1 12 36.5 61 61 85.5 110 127s dimension(s): 127s from to offset delta point x/y 127s X1 1 6 0 2 FALSE [x] 127s X2 1 5 1 2 FALSE [y] 127s > st_downsample(s, 1, offset = c(0,1))[[1]] 127s [,1] [,2] [,3] [,4] [,5] 127s [1,] 12 34 56 78 100 127s [2,] 14 36 58 80 102 127s [3,] 16 38 60 82 104 127s [4,] 18 40 62 84 106 127s [5,] 20 42 64 86 108 127s [6,] 22 44 66 88 110 127s > 127s BEGIN TEST ee.R 127s 127s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 127s Copyright (C) 2024 The R Foundation for Statistical Computing 127s Platform: x86_64-pc-linux-gnu 127s 127s R is free software and comes with ABSOLUTELY NO WARRANTY. 127s You are welcome to redistribute it under certain conditions. 127s Type 'license()' or 'licence()' for distribution details. 127s 127s R is a collaborative project with many contributors. 127s Type 'contributors()' for more information and 127s 'citation()' on how to cite R or R packages in publications. 127s 127s Type 'demo()' for some demos, 'help()' for on-line help, or 127s 'help.start()' for an HTML browser interface to help. 127s Type 'q()' to quit R. 127s 127s > # show that extract with exact=TRUE equals st_interpolate_aw(), only much faster 127s > options(digits=15) 127s > suppressPackageStartupMessages(library(stars)) 128s > L = st_as_stars(L7_ETMs)[,,,1] 128s > set.seed(123432) 128s > st_bbox(L) |> 128s + st_as_sfc() |> 128s + st_centroid() |> 128s + st_buffer(50) |> 128s + st_sample(10) |> 128s + st_combine() |> 128s + st_convex_hull() -> ch 128s > if (interactive()) { 128s + plot(L, reset = FALSE) 128s + plot(ch, add = TRUE, border = 'red', col = NA) 128s + } 128s > if (FALSE) { 128s + e = st_extract(L, ch)[[1]] 128s + a = aggregate(L, ch, mean)[[1]] 128s + identical(e, a) # same code path 128s + ee = aggregate(L, ch, mean, exact = TRUE)[[1]] 128s + all.equal(e, ee) 128s + aw = suppressWarnings(st_interpolate_aw(L, ch, extensive = FALSE)$V1) 128s + all.equal(as.vector(ee), aw) 128s + ee0 = st_extract(L, ch, exact = TRUE)[[1]] 128s + all.equal(ee0, ee) # ?? 128s + } 128s > 128s BEGIN TEST extract.R 128s 128s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 128s Copyright (C) 2024 The R Foundation for Statistical Computing 128s Platform: x86_64-pc-linux-gnu 128s 128s R is free software and comes with ABSOLUTELY NO WARRANTY. 128s You are welcome to redistribute it under certain conditions. 128s Type 'license()' or 'licence()' for distribution details. 128s 128s R is a collaborative project with many contributors. 128s Type 'contributors()' for more information and 128s 'citation()' on how to cite R or R packages in publications. 128s 128s Type 'demo()' for some demos, 'help()' for on-line help, or 128s 'help.start()' for an HTML browser interface to help. 128s Type 'q()' to quit R. 128s 128s > # Create 'stars' object 128s > set.seed(1331) 128s > suppressPackageStartupMessages(library(stars)) 128s > volcano = rbind(volcano, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA, NA) # add NA rows 128s > d = st_dimensions(x = 1:ncol(volcano), y = 1:nrow(volcano)) 128s > (r = st_as_stars(t(volcano))) 128s stars object with 2 dimensions and 1 attribute 128s attribute(s): 128s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 128s A1 94 108 124 130.1879 150 195 732 128s dimension(s): 128s from to offset delta point x/y 128s X1 1 61 0 1 FALSE [x] 128s X2 1 99 0 1 FALSE [y] 128s > r = st_set_dimensions(r, 1, offset = 0, delta = 1) 128s > r = st_set_dimensions(r, 2, offset = nrow(volcano), delta = -1) 128s > 128s > # Create points 128s > pnt = st_sample(st_as_sfc(st_bbox(r)), 100) 128s > pnt = st_as_sf(pnt) 128s > 128s > # Extract - 'st_join' 128s > x = st_join(pnt, st_as_sf(r)) 129s > 129s > # Extract - 'st_extract' 129s > y = st_extract(r, pnt) 129s > 129s > # check there are NA's: 129s > any(is.na(x)) 129s [1] TRUE 129s > # Compare 129s > all.equal(x$A1, y[[1]]) 129s [1] TRUE 129s > 129s > ################################################ 129s > if (FALSE) { 129s + 129s + ## tic: segfaults 129s + # check equal results with stars_proxy: 129s + #x = st_extract(stars:::st_as_stars_proxy(r), pnt) 129s + #all.equal(x$A1, y[[1]]) 129s + #all.equal(x, y) 129s + 129s + r = c(r, 2*r, 10*r) 129s + x = st_join(pnt, st_as_sf(r)) 129s + y = st_as_sf(st_extract(r, pnt)) 129s + all.equal(x, y) 129s + 129s + ## tic: segfaults 129s + #x = st_extract(stars:::st_as_stars_proxy(merge(r)), pnt) 129s + #all.equal(st_as_sf(x), y) 129s + 129s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 129s + xp = read_stars(tif, proxy = TRUE) 129s + xm = read_stars(tif, proxy = FALSE) 129s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 129s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 129s + em = st_extract(xm, pts) 129s + if (utils::packageVersion("sf") >= "0.9-7") { 129s + ep = st_extract(xp, pts) 129s + print(all.equal(ep, em, check.attributes = TRUE)) 129s + } 129s + 129s + # two-attribute objects: 129s + library(stars) 129s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 129s + xp = read_stars(c(tif, tif), proxy = TRUE) 129s + xm = read_stars(c(tif, tif), proxy = FALSE) 129s + pts = st_sample(st_as_sfc(st_bbox(xp)), 10) 129s + pts = c(pts, st_as_sfc("POINT(0 0)"), pts) 129s + em = st_extract(xm, pts) 129s + if (utils::packageVersion("sf") >= "0.9-7") { 129s + ep = st_extract(xp, pts) 129s + print(all.equal(ep, em, check.attributes = TRUE)) 129s + } 129s + 129s + # single-attribute, single raster objects: 129s + tif1 = paste0(tempfile(), ".tif") 129s + write_stars(xm[1,,,1], "x.tif") 129s + xp = read_stars("x.tif", proxy = TRUE) 129s + xm = read_stars("x.tif", proxy = FALSE) 129s + em = st_extract(xm, pts) 129s + if (utils::packageVersion("sf") >= "0.9-7") { 129s + ep = st_extract(xp, pts) 129s + print(all.equal(ep, em, check.attributes = TRUE)) 129s + } 129s + 129s + # multiple-file attributes: 129s + x = c( 129s + "avhrr-only-v2.19810901.nc", 129s + "avhrr-only-v2.19810902.nc", 129s + "avhrr-only-v2.19810903.nc", 129s + "avhrr-only-v2.19810904.nc", 129s + "avhrr-only-v2.19810905.nc", 129s + "avhrr-only-v2.19810906.nc", 129s + "avhrr-only-v2.19810907.nc", 129s + "avhrr-only-v2.19810908.nc", 129s + "avhrr-only-v2.19810909.nc" 129s + ) 129s + file_list = system.file(paste0("netcdf/", x), package = "starsdata") 129s + if (!identical(file_list, "")) { 129s + y = read_stars(file_list, quiet = TRUE) 129s + print(y) 129s + st_crs(y) = "OGC:CRS84" 129s + pts = st_sample(st_as_sfc(st_bbox(y)), 10) 129s + em = st_extract(y, pts) 129s + 129s + (y = read_stars(file_list, quiet = TRUE, proxy = TRUE)) 129s + print(y) 129s + st_crs(y) = "OGC:CRS84" 129s + if (utils::packageVersion("sf") >= "0.9-7") { 129s + ep = st_extract(y, pts) 129s + print(all.equal(em, ep)) 129s + } 129s + } 129s + 129s + # nearest & bilinear comparison: 129s + if (utils::packageVersion("sf") >= "0.9-7") { 129s + set.seed(12331) 129s + s = st_as_stars(matrix(rnorm(16), 4)) 129s + pts = st_sample(st_as_sfc(st_bbox(s)), 10000, type = "regular") 129s + s1 = st_extract(s, pts, bilinear = FALSE) 129s + s2 = st_extract(s, pts, bilinear = TRUE) 129s + s1$s2 = s2[[1]] 129s + names(s1)[c(1,3)] = c("nearest", "bilinear") 129s + print(s1[sample(10000, 5),]) 129s + } 129s + } 129s > 129s BEGIN TEST gridtypes.R 129s 129s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 129s Copyright (C) 2024 The R Foundation for Statistical Computing 129s Platform: x86_64-pc-linux-gnu 129s 129s R is free software and comes with ABSOLUTELY NO WARRANTY. 129s You are welcome to redistribute it under certain conditions. 129s Type 'license()' or 'licence()' for distribution details. 129s 129s R is a collaborative project with many contributors. 129s Type 'contributors()' for more information and 129s 'citation()' on how to cite R or R packages in publications. 129s 129s Type 'demo()' for some demos, 'help()' for on-line help, or 129s 'help.start()' for an HTML browser interface to help. 129s Type 'q()' to quit R. 129s 129s > suppressPackageStartupMessages(library(stars)) 129s > 129s > # regular, but not spatial: 129s > d = st_dimensions(a = 1:3, b = 1:3, band = c("foo", "bar")) 129s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 129s stars object with 3 dimensions and 1 attribute 129s attribute(s): 129s Min. 1st Qu. Median Mean 3rd Qu. Max. 129s X 1 5.25 9.5 9.5 13.75 18 129s dimension(s): 129s from to offset delta point values 129s a 1 3 1 1 FALSE NULL 129s b 1 3 1 1 FALSE NULL 129s band 1 2 NA NA FALSE foo, bar 129s > as.data.frame(st, add_max=FALSE)[1:4,] 129s a b band X 129s 1 1 1 foo 1 129s 2 2 1 foo 2 129s 3 3 1 foo 3 129s 4 1 2 foo 4 129s > try(x <- st_bbox(st)) # error 129s > 129s > # regular, geotransform: 129s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 129s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 129s stars object with 3 dimensions and 1 attribute 129s attribute(s)Error in st_bbox.dimensions(st_dimensions(obj), ...) : 129s dimensions table does not have x & y, nor an sfc dimension 129s : 129s Min. 1st Qu. Median Mean 3rd Qu. Max. 129s X 1 5.25 9.5 9.5 13.75 18 129s dimension(s): 129s from to offset delta point values x/y 129s x 1 3 1 1 FALSE NULL [x] 129s y 1 3 1 1 FALSE NULL [y] 129s band 1 2 NA NA FALSE foo, bar 129s > as.data.frame(st, add_max=FALSE)[1:4,] 129s x y band X 129s 1 1.5 1.5 foo 1 129s 2 2.5 1.5 foo 2 129s 3 3.5 1.5 foo 3 129s 4 1.5 2.5 foo 4 129s > as.data.frame(st, add_max=TRUE)[1:4,] 129s x y band x_max y_max X 129s 1 1 1 foo 2 2 1 129s 2 2 1 foo 3 2 2 129s 3 3 1 foo 4 2 3 129s 4 1 2 foo 2 3 4 129s > st_bbox(st) 129s xmin ymin xmax ymax 129s 1 1 4 4 129s > 129s > # rectilinear with offset given: 129s > xd = c(1, 2, 4) 129s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 129s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 129s stars object with 3 dimensions and 1 attribute 129s attribute(s): 129s Min. 1st Qu. Median Mean 3rd Qu. Max. 129s X 1 5.25 9.5 9.5 13.75 18 129s dimension(s): 129s from to offset delta point values x/y 129s x 1 3 NA NA FALSE [1,2), [2,4), [4,6) [x] 129s y 1 3 1 1 FALSE NULL [y] 129s band 1 2 NA NA FALSE foo, bar 129s > as.data.frame(st, add_max=FALSE)[1:4,] 129s x y band X 129s 1 1.5 1.5 foo 1 129s 2 3.0 1.5 foo 2 129s 3 5.0 1.5 foo 3 129s 4 1.5 2.5 foo 4 129s > as.data.frame(st, add_max=TRUE)[1:4,] 129s x y band x_max y_max X 129s 1 1 1 foo 2 2 1 129s 2 2 1 foo 4 2 2 129s 3 4 1 foo 6 2 3 129s 4 1 2 foo 2 3 4 129s > st_bbox(st) 129s xmin ymin xmax ymax 129s 1 1 6 4 129s > 129s > # rectilinear with midpoints given: 129s > xd = c(1, 2, 4) 129s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE) 129s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 129s stars object with 3 dimensions and 1 attribute 129s attribute(s): 129s Min. 1st Qu. Median Mean 3rd Qu. Max. 129s X 1 5.25 9.5 9.5 13.75 18 129s dimension(s): 129s from to offset delta point values x/y 129s x 1 3 NA NA FALSE [0.5,1.5), [1.5,3.0), [3.0,5.0) [x] 129s y 1 3 0.5 1 FALSE NULL [y] 129s band 1 2 NA NA FALSE foo, bar 129s > as.data.frame(st, add_max=FALSE)[1:4,] 129s x y band X 129s 1 1.00 1 foo 1 129s 2 2.25 1 foo 2 129s 3 4.00 1 foo 3 129s 4 1.00 2 foo 4 129s > as.data.frame(st, add_max=TRUE)[1:4,] 129s x y band x_max y_max X 129s 1 0.5 0.5 foo 1.5 1.5 1 129s 2 1.5 0.5 foo 3.0 1.5 2 129s 3 3.0 0.5 foo 5.0 1.5 3 129s 4 0.5 1.5 foo 1.5 2.5 4 129s > st_bbox(st) 129s xmin ymin xmax ymax 129s 0.5 0.5 5.0 3.5 129s > 129s > # rectilinear with midpoints given, point support 129s > xd = c(1, 2, 4) 129s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), cell_midpoints = TRUE, point = TRUE) 129s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 129s stars object with 3 dimensions and 1 attribute 129s attribute(s): 129s Min. 1st Qu. Median Mean 3rd Qu. Max. 129s X 1 5.25 9.5 9.5 13.75 18 129s dimension(s): 129s from to offset delta point values x/y 129s x 1 3 NA NA TRUE 1, 2, 4 [x] 129s y 1 3 0.5 1 TRUE NULL [y] 129s band 1 2 NA NA TRUE foo, bar 129s > as.data.frame(st, add_max=FALSE)[1:4,] 129s x y band X 129s 1 1 1 foo 1 129s 2 2 1 foo 2 129s 3 4 1 foo 3 129s 4 1 2 foo 4 129s > as.data.frame(st, add_max=TRUE)[1:4,] 129s x y band x_max y_max X 129s 1 1 0.5 foo 1 1.5 1 129s 2 2 0.5 foo 2 1.5 2 129s 3 4 0.5 foo 4 1.5 3 129s 4 1 1.5 foo 1 2.5 4 129s > st_bbox(st) 129s xmin ymin xmax ymax 129s 1.0 0.5 4.0 3.5 129s > 129s > # rectilinear with start/end given: 129s > #xd = stars:::make_intervals(start = c(1,2,4), end = c(2, 4, 8)) 129s > xd = c(1, 2, 4, 8) # one more than dim of the data array 129s > d = st_dimensions(x = xd, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y")) 129s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 129s stars object with 3 dimensions and 1 attribute 129s attribute(s): 129s Min. 1st Qu. Median Mean 3rd Qu. Max. 129s X 1 5.25 9.5 9.5 13.75 18 129s dimension(s): 129s from to offset delta point values x/y 129s x 1 3 NA NA FALSE [1,2), [2,4), [4,8) [x] 129s y 1 3 1 1 FALSE NULL [y] 129s band 1 2 NA NA FALSE foo, bar 129s > as.data.frame(st, add_max=FALSE)[1:4,] 129s x y band X 129s 1 1.5 1.5 foo 1 129s 2 3.0 1.5 foo 2 129s 3 6.0 1.5 foo 3 129s 4 1.5 2.5 foo 4 129s > as.data.frame(st, add_max=TRUE)[1:4,] 129s x y band x_max y_max X 129s 1 1 1 foo 2 2 1 129s 2 2 1 foo 4 2 2 129s 3 4 1 foo 8 2 3 129s 4 1 2 foo 2 3 4 129s > st_bbox(st) 129s xmin ymin xmax ymax 129s 1 1 8 4 129s > 129s > # with sfc: 129s > sfc = st_sfc(st_point(0:1), st_point(2:1), st_point(4:3)) 129s > d = st_dimensions(x = sfc, y = 1:3, band = c("foo", "bar")) 129s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 129s stars object with 3 dimensions and 1 attribute 129s attribute(s): 129s Min. 1st Qu. Median Mean 3rd Qu. Max. 129s X 1 5.25 9.5 9.5 13.75 18 129s dimension(s): 129s from to offset delta point values 129s x 1 3 NA NA TRUE POINT (0 1),...,POINT (4 3) 129s y 1 3 1 1 FALSE NULL 129s band 1 2 NA NA FALSE foo, bar 129s > as.data.frame(st, add_max=FALSE)[1:4,] 129s x y band X 129s 1 POINT (0 1) 1 foo 1 129s 2 POINT (2 1) 1 foo 2 129s 3 POINT (4 3) 1 foo 3 129s 4 POINT (0 1) 2 foo 4 129s > st_as_sf(st, long = TRUE)[1:4,] 129s Simple feature collection with 4 features and 3 fields 129s Geometry type: POINT 129s Dimension: XY 129s Bounding box: xmin: 0 ymin: 1 xmax: 4 ymax: 3 129s CRS: NA 129s y band X x 129s 1 1 foo 1 POINT (0 1) 129s 2 1 foo 2 POINT (2 1) 129s 3 1 foo 3 POINT (4 3) 129s 4 2 foo 4 POINT (0 1) 129s > st_bbox(st) 129s xmin ymin xmax ymax 129s 0 1 4 3 129s > 129s > # rotated/sheared: 129s > d = st_dimensions(x = 1:3, y = 1:3, band = c("foo", "bar"), .raster = c("x", "y"), affine = c(0.2, -0.2)) 129s > (st = st_as_stars(array(1:18, c(3,3,2)), dimension = d)) 129s stars object with 3 dimensions and 1 attribute 129s attribute(s): 129s Min. 1st Qu. Median Mean 3rd Qu. Max. 129s X 1 5.25 9.5 9.5 13.75 18 129s dimension(s): 129s from to offset delta point values x/y 129s x 1 3 1 1 FALSE NULL [x] 129s y 1 3 1 1 FALSE NULL [y] 129s band 1 2 NA NA FALSE foo, bar 129s sheared raster with parameters: 0.2 -0.2 129s > as.data.frame(st, add_max=FALSE)[1:4,] 129s x y X 129s 1 1.6 1.4 1 129s 2 2.6 1.2 2 129s 3 3.6 1.0 3 129s 4 1.8 2.4 4 129s > try(as.data.frame(st, add_max=TRUE)[1:4,]) # errors 129s Error in st_coordinates.stars(x, add_max = add_max, center = center, ...) : 129s add_max will not work for rotated/shared rasters 129s > st_bbox(st) 129s xmin ymin xmax ymax 129s 1.0 0.4 4.6 4.0 129s > 129s > # curvilinear: 129s > set.seed(13531) 129s > lon = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 129s > lat = st_as_stars(matrix(signif(runif(9), 2), 3, 3)) 129s > ll = setNames(c(lon, lat), c("lon", "lat")) 129s > d = st_dimensions(lon = 1:3, lat = 1:3) 129s > a = st_as_stars(list(X = array(1:9, c(3,3))), dimensions = d) 129s > (st = st_as_stars(a, curvilinear = ll)) 129s stars object with 2 dimensions and 1 attribute 129s attribute(s): 129s Min. 1st Qu. Median Mean 3rd Qu. Max. 129s X 1 3 5 5 7 9 129s dimension(s): 129s from to refsys point values x/y 129s lon 1 3 WGS 84 (CRS84) FALSE [3x3] 0.03,...,0.89 [x] 129s lat 1 3 WGS 84 (CRS84) FALSE [3x3] 0.021,...,0.89 [y] 129s curvilinear grid 129s > as.data.frame(st) 129s lon lat X 129s 1 0.89 0.250 1 129s 2 0.64 0.510 2 129s 3 0.30 0.670 3 129s 4 0.69 0.890 4 129s 5 0.47 0.890 5 129s 6 0.26 0.190 6 129s 7 0.57 0.021 7 129s 8 0.27 0.220 8 129s 9 0.03 0.340 9 129s > st_bbox(st) 129s xmin ymin xmax ymax 129s 0.030 0.021 0.890 0.890 129s > 129s > # time regular: 129s > t = as.Date("2019-01-20") + 0:3 129s > d = st_dimensions(t, sfc) 129s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 129s stars object with 2 dimensions and 1 attribute 129s attribute(s): 129s Min. 1st Qu. Median Mean 3rd Qu. Max. 129s a 1 3.75 6.5 6.5 9.25 12 129s dimension(s): 129s from to offset delta refsys point values 129s X1 1 4 2019-01-20 1 days Date FALSE NULL 129s X2 1 3 NA NA NA TRUE POINT (0 1),...,POINT (4 3) 129s > as.data.frame(st) 129s X1 X2 a 129s 1 2019-01-20 POINT (0 1) 1 129s 2 2019-01-21 POINT (0 1) 2 129s 3 2019-01-22 POINT (0 1) 3 129s 4 2019-01-23 POINT (0 1) 4 129s 5 2019-01-20 POINT (2 1) 5 129s 6 2019-01-21 POINT (2 1) 6 129s 7 2019-01-22 POINT (2 1) 7 129s 8 2019-01-23 POINT (2 1) 8 129s 9 2019-01-20 POINT (4 3) 9 129s 10 2019-01-21 POINT (4 3) 10 129s 11 2019-01-22 POINT (4 3) 11 129s 12 2019-01-23 POINT (4 3) 12 129s > 129s > # time, rectilinear 129s > t = as.Date("2019-01-20") + c(0, 2, 3, 10) 129s > d = st_dimensions(t, sfc) 129s > (st = st_as_stars(list(a = matrix(1:12, 4, 3)), dimensions = d)) 129s stars object with 2 dimensions and 1 attribute 129s attribute(s): 129s Min. 1st Qu. Median Mean 3rd Qu. Max. 129s a 1 3.75 6.5 6.5 9.25 12 129s dimension(s): 129s from to refsys point values 129s X1 1 4 Date FALSE 2019-01-20,...,2019-01-30 129s X2 1 3 NA TRUE POINT (0 1),...,POINT (4 3) 129s > as.data.frame(st) 129s X1 X2 a 129s 1 2019-01-20 POINT (0 1) 1 129s 2 2019-01-22 POINT (0 1) 2 129s 3 2019-01-23 POINT (0 1) 3 129s 4 2019-01-30 POINT (0 1) 4 129s 5 2019-01-20 POINT (2 1) 5 129s 6 2019-01-22 POINT (2 1) 6 129s 7 2019-01-23 POINT (2 1) 7 129s 8 2019-01-30 POINT (2 1) 8 129s 9 2019-01-20 POINT (4 3) 9 129s 10 2019-01-22 POINT (4 3) 10 129s 11 2019-01-23 POINT (4 3) 11 129s 12 2019-01-30 POINT (4 3) 12 129s > 129s BEGIN TEST mdim.R 129s 129s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 129s Copyright (C) 2024 The R Foundation for Statistical Computing 129s Platform: x86_64-pc-linux-gnu 129s 129s R is free software and comes with ABSOLUTELY NO WARRANTY. 129s You are welcome to redistribute it under certain conditions. 129s Type 'license()' or 'licence()' for distribution details. 129s 129s R is a collaborative project with many contributors. 129s Type 'contributors()' for more information and 129s 'citation()' on how to cite R or R packages in publications. 129s 129s Type 'demo()' for some demos, 'help()' for on-line help, or 129s 'help.start()' for an HTML browser interface to help. 129s Type 'q()' to quit R. 129s 130s > Sys.setenv(TZ="") 130s > suppressPackageStartupMessages(library(stars)) 130s > matrix(1:4,2) 130s [,1] [,2] 130s [1,] 1 3 130s [2,] 2 4 130s > m = matrix(1:4,2) 130s > s = st_as_stars(m) 130s > 130s > s = st_set_dimensions(s, st_dimensions(s), xy = NULL) 130s > sfc = st_sfc(st_point(0:1), st_point(3:2)) 130s > s = st_set_dimensions(s, 1, sfc) |> st_set_crs(4326) 130s > tm = as.POSIXct("2023-03-04 12:35") + c(0, 3600) 130s > s = st_set_dimensions(s, 2, tm) 130s > f = tempfile(fileext = ".nc") 130s > write_mdim(s, f, as_float = FALSE) 130s > s2 = read_mdim(f) 130s Warning messages: 130s 1: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 130s GDAL Error 6: SetIndexingVariable() not implemented 130s 2: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 130s GDAL Error 6: SetIndexingVariable() not implemented 130s > #print(s2) 130s > print(all.equal(s, s2, check.attributes = FALSE)) 130s [1] TRUE 130s > print(all.equal(s, s2)) 130s [1] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"input\": 1 string mismatch >" 130s [2] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"refsys\": Component \"wkt\": 1 string mismatch >" 130s [3] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"input\": 1 string mismatch > >" 130s [4] "Attributes: < Component \"dimensions\": Component \"X1\": Component \"values\": Attributes: < Component \"crs\": Component \"wkt\": 1 string mismatch > >" 130s [5] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"offset\": 'tzone' attributes are inconsistent ('' and 'UTC') >" 130s [6] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 130s > 130s > st_crs(sfc) = st_crs(s2) 130s > st_crs(s) = st_crs(s2) 130s > tm = as.Date("2023-02-25") + 0:1 130s > sd = st_set_dimensions(s, 2, tm) 130s > print(sd) 130s stars object with 2 dimensions and 1 attribute 130s attribute(s): 130s Min. 1st Qu. Median Mean 3rd Qu. Max. 130s A1 1 1.75 2.5 2.5 3.25 4 130s dimension(s): 130s from to offset delta refsys point values 130s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 130s X2 1 2 2023-02-25 1 days Date FALSE NULL 130s > sd = st_set_dimensions(sd, 1, sfc) 130s > print(sd) 130s stars object with 2 dimensions and 1 attribute 130s attribute(s): 130s Min. 1st Qu. Median Mean 3rd Qu. Max. 130s A1 1 1.75 2.5 2.5 3.25 4 130s dimension(s): 130s from to offset delta refsys point values 130s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 130s X2 1 2 2023-02-25 1 days Date FALSE NULL 130s > f = tempfile(fileext = ".nc") 130s > write_mdim(sd, f) 130s > sd2 = read_mdim(f) 130s Warning messages: 130s 1: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 130s GDAL Error 6: SetIndexingVariable() not implemented 130s 2: In CPL_write_mdim(file, driver, dimx, cdl, wkt, xy, root_group_options, : 130s GDAL Error 6: SetIndexingVariable() not implemented 130s > print(sd2) 130s stars object with 2 dimensions and 1 attribute 130s attribute(s): 130s Min. 1st Qu. Median Mean 3rd Qu. Max. 130s A1 1 1.75 2.5 2.5 3.25 4 130s dimension(s): 130s from to offset delta refsys point values 130s X1 1 2 NA NA WGS 84 TRUE POINT (0 1), POINT (3 2) 130s X2 1 2 2023-02-25 1 days Date NA NULL 130s > print(all.equal(sd, sd2, check.attributes = FALSE)) 130s [1] TRUE 130s > print(all.equal(sd, sd2)) 130s [1] "Attributes: < Component \"dimensions\": Component \"X2\": Component \"point\": 'is.NA' value mismatch: 1 in current 0 in target >" 130s > # if (.Platform$OS.type == "unix") { 130s > # print(read_mdim(paste0("/vsizip/", (system.file("zarr/sic_daily_sample.zarr.zip", package = "stars")))) 130s > # } 130s > 130s BEGIN TEST nc.R 130s 130s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 130s Copyright (C) 2024 The R Foundation for Statistical Computing 130s Platform: x86_64-pc-linux-gnu 130s 130s R is free software and comes with ABSOLUTELY NO WARRANTY. 130s You are welcome to redistribute it under certain conditions. 130s Type 'license()' or 'licence()' for distribution details. 130s 130s R is a collaborative project with many contributors. 130s Type 'contributors()' for more information and 130s 'citation()' on how to cite R or R packages in publications. 130s 130s Type 'demo()' for some demos, 'help()' for on-line help, or 130s 'help.start()' for an HTML browser interface to help. 130s Type 'q()' to quit R. 130s 130s > # examples with the sf::nc polygon dataset NOT ABOUT NETCDF's, see e.g. stars.R netcdf.R 130s > suppressPackageStartupMessages(library(sf)) 131s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 131s > m = st_set_geometry(nc, NULL) 131s > n = as.matrix(m[c("BIR74", "SID74", "NWBIR74", "BIR79", "SID79", "NWBIR79")]) 131s > dim(n) = c(county = 100, var = 3, year = 2) 131s > dimnames(n) = list(county = nc$NAME, var = c("BIR", "SID", "NWBIR"), year = c(1974, 1979)) 131s > suppressPackageStartupMessages(library(stars)) 131s > (st = st_as_stars(pop = n)) 131s stars object with 3 dimensions and 1 attribute 131s attribute(s): 131s Min. 1st Qu. Median Mean 3rd Qu. Max. 131s pop 0 8 538 1657.032 1784 30757 131s dimension(s): 131s from to values 131s county 1 100 Ashe,...,Brunswick 131s var 1 3 BIR , SID , NWBIR 131s year 1 2 1974, 1979 131s > foo <- st %>% st_set_dimensions(1, st_geometry(nc)) # %>% st_set_dimensions(3, c(1974, 1979)) 131s > st %>% st_set_dimensions(1, st_geometry(nc)) %>% st_set_dimensions(names = c("geometries", "var", "year")) 131s stars object with 3 dimensions and 1 attribute 131s attribute(s): 131s Min. 1st Qu. Median Mean 3rd Qu. Max. 131s pop 0 8 538 1657.032 1784 30757 131s dimension(s): 131s from to refsys point 131s geometries 1 100 NAD27 FALSE 131s var 1 3 NA NA 131s year 1 2 NA NA 131s values 131s geometries MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 131s var BIR , SID , NWBIR 131s year 1974, 1979 131s > foo 131s stars object with 3 dimensions and 1 attribute 131s attribute(s): 131s Min. 1st Qu. Median Mean 3rd Qu. Max. 131s pop 0 8 538 1657.032 1784 30757 131s dimension(s): 131s from to refsys point 131s county 1 100 NAD27 FALSE 131s var 1 3 NA NA 131s year 1 2 NA NA 131s values 131s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 131s var BIR , SID , NWBIR 131s year 1974, 1979 131s > st_bbox(foo) 131s xmin ymin xmax ymax 131s -84.32385 33.88199 -75.45698 36.58965 131s > (x = st_as_sf(foo)) 131s Simple feature collection with 100 features and 6 fields 131s Geometry type: MULTIPOLYGON 131s Dimension: XY 131s Bounding box: xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965 131s Geodetic CRS: NAD27 131s First 10 features: 131s BIR.1974 SID.1974 NWBIR.1974 BIR.1979 SID.1979 NWBIR.1979 131s 1 1091 1 10 1364 0 19 131s 2 487 0 10 542 3 12 131s 3 3188 5 208 3616 6 260 131s 4 508 1 123 830 2 145 131s 5 1421 9 1066 1606 3 1197 131s 6 1452 7 954 1838 5 1237 131s 7 286 0 115 350 2 139 131s 8 420 0 254 594 2 371 131s 9 968 4 748 1190 2 844 131s 10 1612 1 160 2038 5 176 131s county 131s 1 MULTIPOLYGON (((-81.47276 3... 131s 2 MULTIPOLYGON (((-81.23989 3... 131s 3 MULTIPOLYGON (((-80.45634 3... 131s 4 MULTIPOLYGON (((-76.00897 3... 131s 5 MULTIPOLYGON (((-77.21767 3... 131s 6 MULTIPOLYGON (((-76.74506 3... 131s 7 MULTIPOLYGON (((-76.00897 3... 131s 8 MULTIPOLYGON (((-76.56251 3... 131s 9 MULTIPOLYGON (((-78.30876 3... 131s 10 MULTIPOLYGON (((-80.02567 3... 131s > frac = function(x) x[2] / x[1] 131s > frac2 = function(x) c(sidsr = x[2] / x[1], nwbr = x[3] / x[1]) 131s > frac2an = function(x) c(x[2] / x[1], x[3] / x[1]) 131s > st_apply(foo, c(1,3), frac) 131s stars object with 2 dimensions and 1 attribute 131s attribute(s): 131s Min. 1st Qu. Median Mean 3rd Qu. Max. 131s frac 0 0.001197874 0.001930504 0.002042241 0.002599348 0.00955414 131s dimension(s): 131s from to refsys point 131s county 1 100 NAD27 FALSE 131s year 1 2 NA NA 131s values 131s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 131s year 1974, 1979 131s > st_apply(foo, c(1,3), frac2) 131s stars object with 3 dimensions and 1 attribute 131s attribute(s): 131s Min. 1st Qu. Median Mean 3rd Qu. Max. 131s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 131s dimension(s): 131s from to refsys point 131s frac2 1 2 NA NA 131s county 1 100 NAD27 FALSE 131s year 1 2 NA NA 131s values 131s frac2 sidsr, nwbr 131s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 131s year 1974, 1979 131s > st_apply(foo, c(1,3), frac2an) 131s stars object with 3 dimensions and 1 attribute 131s attribute(s): 131s Min. 1st Qu. Median Mean 3rd Qu. Max. 131s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 131s dimension(s): 131s from to refsys point 131s frac2an 1 2 NA NA 131s county 1 100 NAD27 FALSE 131s year 1 2 NA NA 131s values 131s frac2an NULL 131s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 131s year 1974, 1979 131s > library(abind) 131s > (x = aperm(st_apply(foo, c(1,3), frac2), c(2,3,1))) 131s stars object with 3 dimensions and 1 attribute 131s attribute(s): 131s Min. 1st Qu. Median Mean 3rd Qu. Max. 131s pop 0 0.001923331 0.005119673 0.1567576 0.3065298 0.7727273 131s dimension(s): 131s from to refsys point 131s county 1 100 NAD27 FALSE 131s year 1 2 NA NA 131s frac2 1 2 NA NA 131s values 131s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 131s year 1974, 1979 131s frac2 sidsr, nwbr 131s > y = aperm(st_apply(foo, c(1,3), frac2), c("county","year","frac2")) 131s > all.equal(st_dimensions(x), st_dimensions(y)) 131s [1] TRUE 131s > 131s > split(foo, 2) 131s stars object with 2 dimensions and 3 attributes 131s attribute(s): 131s Min. 1st Qu. Median Mean 3rd Qu. Max. 131s BIR 248 1176.75 2265 3761.770 4450.75 30757 131s SID 0 2.00 5 7.515 9.00 57 131s NWBIR 1 206.00 742 1201.810 1315.75 11631 131s dimension(s): 131s from to refsys point 131s county 1 100 NAD27 FALSE 131s year 1 2 NA NA 131s values 131s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 131s year 1974, 1979 131s > split(foo, 3) 131s stars object with 2 dimensions and 2 attributes 131s attribute(s): 131s Min. 1st Qu. Median Mean 3rd Qu. Max. 131s 1974 0 8 501.5 1452.367 1580.50 21588 131s 1979 0 9 614.0 1861.697 2040.25 30757 131s dimension(s): 131s from to refsys point 131s county 1 100 NAD27 FALSE 131s var 1 3 NA NA 131s values 131s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 131s var BIR , SID , NWBIR 131s > 131s > st_crs(foo) 131s Coordinate Reference System: 131s User input: NAD27 131s wkt: 131s GEOGCRS["NAD27", 131s DATUM["North American Datum 1927", 131s ELLIPSOID["Clarke 1866",6378206.4,294.978698213898, 131s LENGTHUNIT["metre",1]]], 131s PRIMEM["Greenwich",0, 131s ANGLEUNIT["degree",0.0174532925199433]], 131s CS[ellipsoidal,2], 131s AXIS["geodetic latitude (Lat)",north, 131s ORDER[1], 131s ANGLEUNIT["degree",0.0174532925199433]], 131s AXIS["geodetic longitude (Lon)",east, 131s ORDER[2], 131s ANGLEUNIT["degree",0.0174532925199433]], 131s USAGE[ 131s SCOPE["Geodesy."], 131s AREA["North and central America: Antigua and Barbuda - onshore. Bahamas - onshore plus offshore over internal continental shelf only. Belize - onshore. British Virgin Islands - onshore. Canada onshore - Alberta, British Columbia, Manitoba, New Brunswick, Newfoundland and Labrador, Northwest Territories, Nova Scotia, Nunavut, Ontario, Prince Edward Island, Quebec, Saskatchewan and Yukon - plus offshore east coast. Cuba - onshore and offshore. El Salvador - onshore. Guatemala - onshore. Honduras - onshore. Panama - onshore. Puerto Rico - onshore. Mexico - onshore plus offshore east coast. Nicaragua - onshore. United States (USA) onshore and offshore - Alabama, Alaska, Arizona, Arkansas, California, Colorado, Connecticut, Delaware, Florida, Georgia, Idaho, Illinois, Indiana, Iowa, Kansas, Kentucky, Louisiana, Maine, Maryland, Massachusetts, Michigan, Minnesota, Mississippi, Missouri, Montana, Nebraska, Nevada, New Hampshire, New Jersey, New Mexico, New York, North Carolina, North Dakota, Ohio, Oklahoma, Oregon, Pennsylvania, Rhode Island, South Carolina, South Dakota, Tennessee, Texas, Utah, Vermont, Virginia, Washington, West Virginia, Wisconsin and Wyoming - plus offshore . US Virgin Islands - onshore."], 131s BBOX[7.15,167.65,83.17,-47.74]], 131s ID["EPSG",4267]] 131s > plot(foo) 131s > 131s > # subset vector cube: 131s > foo[nc[1]] 131s stars object with 3 dimensions and 1 attribute 131s attribute(s): 131s Min. 1st Qu. Median Mean 3rd Qu. Max. 131s pop 0 8 538 1657.032 1784 30757 131s dimension(s): 131s from to refsys point 131s county 1 100 NAD27 FALSE 131s var 1 3 NA NA 131s year 1 2 NA NA 131s values 131s county MULTIPOLYGON (((-81.47276...,...,MULTIPOLYGON (((-78.65572... 131s var BIR , SID , NWBIR 131s year 1974, 1979 131s > 132s BEGIN TEST plot.R 132s 132s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 132s Copyright (C) 2024 The R Foundation for Statistical Computing 132s Platform: x86_64-pc-linux-gnu 132s 132s R is free software and comes with ABSOLUTELY NO WARRANTY. 132s You are welcome to redistribute it under certain conditions. 132s Type 'license()' or 'licence()' for distribution details. 132s 132s R is a collaborative project with many contributors. 132s Type 'contributors()' for more information and 132s 'citation()' on how to cite R or R packages in publications. 132s 132s Type 'demo()' for some demos, 'help()' for on-line help, or 132s 'help.start()' for an HTML browser interface to help. 132s Type 'q()' to quit R. 132s 132s > suppressPackageStartupMessages(library(stars)) 132s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 132s + data(air) # this loads several datasets in .GlobalEnv 132s + dim(air) 132s + d = st_dimensions(station = st_as_sfc(stations), time = dates) 132s + aq = st_as_stars(list(PM10 = air), dimensions = d) 132s + image(aperm(log(aq), 2:1), main = "NA pattern (white) in PM10 station time series") 132s + st_geometry(aq) 132s + } 133s Geometry set for 70 features 133s Geometry type: POINT 133s Dimension: XY 133s Bounding box: xmin: 6.28107 ymin: 47.80847 xmax: 14.78617 ymax: 54.92497 133s Geodetic CRS: +proj=longlat +datum=WGS84 +no_defs 133s First 5 geometries: 133s POINT (9.585911 53.67057) 133s > 133s > csv = system.file("tif/ESACCI-LC-Legend.csv", package = "starsdata") 133s > if (csv != "") { 133s + rgb = read.csv(csv, header = TRUE, sep = ";") 133s + luc = read_stars(system.file("tif/LUC3.tif", package = "starsdata")) 133s + plot(luc, rgb = rgb, axes = TRUE, key.pos = NULL) 133s + } 133s > 133s > # https://github.com/r-spatial/stars/issues/233 : 133s > nc = read_sf(system.file("shape/nc.shp", package = "sf")) 133s POINT (9.68503 53.52418) 133s POINT (9.791584 54.07312) 133s POINT (13.64701 52.44775) 133s POINT (13.29635 52.65315) 133s > output = st_as_stars(st_bbox(nc), nx = 1, ny = 1, values = 1) 133s > plot(output) 134s > 134s Warning message: 134s In plot.stars(output) : 134s breaks="quantile" leads to a single class; maybe try breaks="equal" instead? 134s BEGIN TEST predict.R 134s 134s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 134s Copyright (C) 2024 The R Foundation for Statistical Computing 134s Platform: x86_64-pc-linux-gnu 134s 134s R is free software and comes with ABSOLUTELY NO WARRANTY. 134s You are welcome to redistribute it under certain conditions. 134s Type 'license()' or 'licence()' for distribution details. 134s 134s R is a collaborative project with many contributors. 134s Type 'contributors()' for more information and 134s 'citation()' on how to cite R or R packages in publications. 134s 134s Type 'demo()' for some demos, 'help()' for on-line help, or 134s 'help.start()' for an HTML browser interface to help. 134s Type 'q()' to quit R. 134s 134s > suppressPackageStartupMessages(library(stars)) 134s > # predict: 134s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 134s > (x = read_stars(tif)) 134s stars object with 3 dimensions and 1 attribute 134s attribute(s): 134s Min. 1st Qu. Median Mean 3rd Qu. Max. 134s L7_ETMs.tif 1 54 69 68.91242 86 255 134s dimension(s): 134s from to offset delta refsys point x/y 134s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 134s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 134s band 1 6 NA NA NA NA 134s > st_crs(x) = st_crs(x) # cleans trailing space 134s > model = lm(x~L7_ETMs.tif, head(as.data.frame(x), 50)) 134s > x = predict(x, model) 135s > 135s > (y = read_stars(tif, proxy = TRUE)) 135s stars_proxy object with 1 attribute in 1 file(s): 135s $L7_ETMs.tif 135s [1] "[...]/L7_ETMs.tif" 135s 135s dimension(s): 135s from to offset delta refsys point x/y 135s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 135s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 135s band 1 6 NA NA NA NA 135s > (yp = predict(y, model)) 135s stars_proxy object with 1 attribute in 1 file(s): 135s $L7_ETMs.tif 135s [1] "[...]/L7_ETMs.tif" 135s 135s dimension(s): 135s from to offset delta refsys point x/y 135s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 135s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 135s band 1 6 NA NA NA NA 135s call_list: 135s [[1]] 135s predict(object = object, model = model) 135s attr(,".Environment") 135s 135s 135s This object has pending lazy operations: dimensions as printed may not reflect this. 135s > all.equal(x, st_as_stars(yp)) 136s [1] TRUE 136s > 136s > yy = st_set_dimensions(y, 3, values = paste0("band", 1:6)) 136s > (y_spl = split(yy, 3)) 136s stars_proxy object with 1 attribute in 1 file(s): 136s $L7_ETMs.tif 136s [1] "[...]/L7_ETMs.tif" 136s 136s dimension(s): 136s from to offset delta refsys point values 136s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 136s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 136s band 1 6 NA NA NA NA band1,...,band6 136s x/y 136s x [x] 136s y [y] 136s band 136s call_list: 136s [[1]] 136s split(x = x, 3) 136s attr(,".Environment") 136s 136s 136s This object has pending lazy operations: dimensions as printed may not reflect this. 136s > as.data.frame(st_as_stars(split(yy, 3)))[1:3,] 136s x y band1 band2 band3 band4 band5 band6 136s 1 288790.5 9120747 69 56 46 79 86 46 136s 2 288819.0 9120747 69 57 49 75 88 49 136s 3 288847.5 9120747 63 52 45 66 75 41 136s > 136s BEGIN TEST proxy.R 136s 136s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 136s Copyright (C) 2024 The R Foundation for Statistical Computing 136s Platform: x86_64-pc-linux-gnu 136s 136s R is free software and comes with ABSOLUTELY NO WARRANTY. 136s You are welcome to redistribute it under certain conditions. 136s Type 'license()' or 'licence()' for distribution details. 136s 136s R is a collaborative project with many contributors. 136s Type 'contributors()' for more information and 136s 'citation()' on how to cite R or R packages in publications. 136s 136s Type 'demo()' for some demos, 'help()' for on-line help, or 136s 'help.start()' for an HTML browser interface to help. 136s Type 'q()' to quit R. 136s 137s > Sys.setenv(TZ="UTC") 137s > suppressPackageStartupMessages(library(sf)) 137s > suppressPackageStartupMessages(library(stars)) 137s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 137s > (r = read_stars(tif, proxy = TRUE)) 137s stars_proxy object with 1 attribute in 1 file(s): 137s $L7_ETMs.tif 137s [1] "[...]/L7_ETMs.tif" 137s 137s dimension(s): 137s from to offset delta refsys point x/y 137s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 137s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 137s band 1 6 NA NA NA NA 137s > if (interactive()) { 137s + plot(r) 137s + } 137s > dim(r) 137s x y band 137s 349 352 6 137s > r[,,,2:3] 137s stars_proxy object with 1 attribute in 1 file(s): 137s $L7_ETMs.tif 137s [1] "[...]/L7_ETMs.tif" 137s 137s dimension(s): 137s from to offset delta refsys point x/y 137s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 137s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 137s band 2 3 NA NA NA NA 137s > r+r 137s stars_proxy object with 1 attribute in 1 file(s): 137s $L7_ETMs.tif 137s [1] "[...]/L7_ETMs.tif" 137s 137s dimension(s): 137s from to offset delta refsys point x/y 137s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 137s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 137s band 1 6 NA NA NA NA 137s call_list: 137s [[1]] 137s e1 + e2 137s attr(,".Environment") 137s 137s 137s This object has pending lazy operations: dimensions as printed may not reflect this. 137s > st_as_stars(sin(r), downsample = 2) 137s stars object with 3 dimensions and 1 attribute 137s attribute(s): 137s Min. 1st Qu. Median Mean 3rd Qu. Max. 137s L7_ETMs.tif -0.9999902 -0.676772 0.0353983 0.01655317 0.7210377 0.9999119 137s dimension(s): 137s from to offset delta refsys point x/y 137s x 1 117 288776 85.01 SIRGAS 2000 / UTM zone 25S FALSE [x] 137s y 1 118 9120761 -85.02 SIRGAS 2000 / UTM zone 25S FALSE [y] 137s band 1 6 NA NA NA NA 137s > aperm(r, c(3,2,1)) 137s stars_proxy object with 1 attribute in 1 file(s): 137s $L7_ETMs.tif 137s [1] "[...]/L7_ETMs.tif" 137s 137s dimension(s): 137s from to offset delta refsys point x/y 137s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 137s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 137s band 1 6 NA NA NA NA 137s call_list: 137s [[1]] 137s aperm(a = a, perm = perm) 137s attr(,".Environment") 137s 137s 137s This object has pending lazy operations: dimensions as printed may not reflect this. 137s > if (interactive()) { 137s + plot(r) 137s + } 137s > (xx = c(r,r)) 137s stars_proxy object with 2 attributes in 2 file(s): 137s $L7_ETMs.tif 137s [1] "[...]/L7_ETMs.tif" 137s 137s $L7_ETMs.tif 137s [1] "[...]/L7_ETMs.tif" 137s 137s dimension(s): 137s from to offset delta refsys point x/y 137s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 137s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 137s band 1 6 NA NA NA NA 137s > st_redimension(xx) 137s stars_proxy object with 1 attribute in 2 file(s): 137s $L7_ETMs.tif.L7_ETMs.tif 137s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 137s 137s dimension(s): 137s from to offset delta refsys point 137s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 137s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 137s band 1 6 NA NA NA NA 137s new_dim 1 2 NA NA NA NA 137s values x/y 137s x NULL [x] 137s y NULL [y] 137s band NULL 137s new_dim L7_ETMs.tif, L7_ETMs.tif 137s > st_as_stars(r) 137s stars object with 3 dimensions and 1 attribute 137s attribute(s): 137s Min. 1st Qu. Median Mean 3rd Qu. Max. 137s L7_ETMs.tif 1 54 69 68.91242 86 255 137s dimension(s): 138s from to offset delta refsys point x/y 138s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 138s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 138s band 1 6 NA NA NA NA 138s > (y = st_apply(r, 1:2, max)) 138s stars_proxy object with 1 attribute in 1 file(s): 138s $L7_ETMs.tif 138s [1] "[...]/L7_ETMs.tif" 138s 138s dimension(s): 138s from to offset delta refsys point x/y 138s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 138s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 138s band 1 6 NA NA NA NA 138s call_list: 138s [[1]] 138s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 138s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 138s attr(,".Environment") 138s 138s 138s This object has pending lazy operations: dimensions as printed may not reflect this. 138s > (yy = st_as_stars(y, downsample = 1)) 138s stars object with 2 dimensions and 1 attribute 138s attribute(s): 138s Min. 1st Qu. Median Mean 3rd Qu. Max. 138s max 55 85 96 99.38568 113 255 138s dimension(s): 138s from to offset delta refsys point x/y 138s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 138s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 138s > (y = adrop(st_apply(r, c("x", "y"), max))) 138s stars_proxy object with 1 attribute in 1 file(s): 138s $L7_ETMs.tif 138s [1] "[...]/L7_ETMs.tif" 138s 138s dimension(s): 138s from to offset delta refsys point x/y 138s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 138s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 138s band 1 6 NA NA NA NA 138s call_list: 138s [[1]] 138s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 138s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 138s attr(,".Environment") 138s 138s 138s [[2]] 138s adrop(x = x, drop = drop) 138s attr(,".Environment") 138s 138s 138s This object has pending lazy operations: dimensions as printed may not reflect this. 138s > (yy = st_as_stars(y, downsample = 1)) 138s stars object with 2 dimensions and 1 attribute 138s attribute(s): 138s Min. 1st Qu. Median Mean 3rd Qu. Max. 138s max 55 85 96 99.38568 113 255 138s dimension(s): 138s from to offset delta refsys point x/y 138s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE [x] 138s y 1 176 9120761 -57 SIRGAS 2000 / UTM zone 25S FALSE [y] 138s > plot(yy) 138s > (y = adrop(st_apply(r, c("x", "band"), max))) 138s stars_proxy object with 1 attribute in 1 file(s): 138s $L7_ETMs.tif 138s [1] "[...]/L7_ETMs.tif" 138s 138s dimension(s): 138s from to offset delta refsys point x/y 138s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 138s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 138s band 1 6 NA NA NA NA 138s call_list: 138s [[1]] 138s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 138s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 138s attr(,".Environment") 138s 138s 138s [[2]] 138s adrop(x = x, drop = drop) 138s attr(,".Environment") 138s 138s 138s This object has pending lazy operations: dimensions as printed may not reflect this. 138s > (yy = st_as_stars(y, downsample = 1)) 138s stars object with 2 dimensions and 1 attribute 138s attribute(s): 138s Min. 1st Qu. Median Mean 3rd Qu. Max. 138s max 77 111 133 137.8505 157 255 138s dimension(s): 138s from to offset delta refsys point 138s x 1 175 288776 56.84 SIRGAS 2000 / UTM zone 25S FALSE 138s band 1 6 NA NA NA NA 138s Warning message: 138s In FUN(X[[i]], ...) : 138s st_apply on x/y dimensions applied to downsampled image(s) 138s > rm(yy) 138s > 138s > (xx = c(r,r)) 138s stars_proxy object with 2 attributes in 2 file(s): 138s $L7_ETMs.tif 138s [1] "[...]/L7_ETMs.tif" 138s 138s $L7_ETMs.tif 138s [1] "[...]/L7_ETMs.tif" 138s 138s dimension(s): 138s from to offset delta refsys point x/y 138s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 138s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 138s band 1 6 NA NA NA NA 138s > names(xx) = c("a", "b") 138s > xx["a"] 138s stars_proxy object with 1 attribute in 1 file(s): 138s $a 138s [1] "[...]/L7_ETMs.tif" 138s 138s dimension(s): 138s from to offset delta refsys point x/y 138s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 138s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 138s band 1 6 NA NA NA NA 138s > pt = st_point(c(x = 290462.103109179, y = 9114202.32594085)) 138s > buf = st_buffer(st_sfc(pt, crs = st_crs(r)), 1500) 138s > buf = st_sfc(st_polygon(list(st_buffer(pt, 1500)[[1]], st_buffer(pt, 1000)[[1]])), 138s + crs = st_crs(r)) 138s > r = r[buf] # crops 138s > r = r[buf, epsilon = 1e-5] # crops with shrinked bounding box 138s > 138s > # c: 138s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 138s > if (FALSE && f != "") { 138s + files = c("avhrr-only-v2.19810901.nc", 138s + "avhrr-only-v2.19810902.nc", 138s + "avhrr-only-v2.19810903.nc", 138s + "avhrr-only-v2.19810904.nc", 138s + "avhrr-only-v2.19810905.nc", 138s + "avhrr-only-v2.19810906.nc", 138s + "avhrr-only-v2.19810907.nc", 138s + "avhrr-only-v2.19810908.nc", 138s + "avhrr-only-v2.19810909.nc") 138s + l = list() 138s + for (f in files) { 138s + from = system.file(paste0("netcdf/", f), package = "starsdata") 138s + l[[f]] = read_stars(from, sub = c("sst", "anom"), proxy = TRUE) 138s + } 138s + ret = do.call(c, l) 138s + print(ret) 138s + all = system.file(paste0("netcdf/", files), package = "starsdata") 138s + ret = read_stars(all, sub = c("sst", "anom")) 138s + print(ret) 138s + print(st_redimension(ret)) # collapse the two attributes into new dimension 138s + 138s + try(ret <- c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 138s + #print(ret) 138s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 138s + #print(ret) 138s + ret <- st_redimension(l[[1]], along = list(times = as.Date("1981-09-01") + 0:1)) 138s + print(ret) 138s + } 138s > 138s > # demonstrate that environments work: 138s > x = read_stars(tif, proxy = TRUE) 138s > f = function(x) { 138s + g = function(xx) { 138s + ndvi = function(z1, z2, z3, z4, z5, z6) (z2-z1)/(z2+z1) 138s + st_apply(xx, 1:2, ndvi) 138s + } 138s + g(x) 138s + } 138s > (x = f(x)) 138s stars_proxy object with 1 attribute in 1 file(s): 138s $L7_ETMs.tif 138s [1] "[...]/L7_ETMs.tif" 138s 138s dimension(s): 138s from to offset delta refsys point x/y 138s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 138s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 138s band 1 6 NA NA NA NA 138s call_list: 138s [[1]] 138s st_apply(X = X, MARGIN = MARGIN, FUN = FUN, CLUSTER = CLUSTER, 138s PROGRESS = PROGRESS, FUTURE = FUTURE, rename = rename, .fname = .fname) 138s attr(,".Environment") 138s 138s 138s This object has pending lazy operations: dimensions as printed may not reflect this. 138s > st_as_stars(x) 138s stars object with 2 dimensions and 1 attribute 138s attribute(s): 138s Min. 1st Qu. Median Mean 3rd Qu. Max. 138s ndvi -0.2828283 -0.1081081 -0.08287293 -0.08464615 -0.05882353 0.09259259 138s dimension(s): 138s from to offset delta refsys point x/y 138s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 138s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 138s > 138s BEGIN TEST raster.R 138s 138s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 138s Copyright (C) 2024 The R Foundation for Statistical Computing 138s Platform: x86_64-pc-linux-gnu 138s 138s R is free software and comes with ABSOLUTELY NO WARRANTY. 138s You are welcome to redistribute it under certain conditions. 138s Type 'license()' or 'licence()' for distribution details. 138s 138s R is a collaborative project with many contributors. 138s Type 'contributors()' for more information and 138s 'citation()' on how to cite R or R packages in publications. 138s 138s Type 'demo()' for some demos, 'help()' for on-line help, or 138s 'help.start()' for an HTML browser interface to help. 138s Type 'q()' to quit R. 138s 138s > options(rgdal_show_exportToProj4_warnings = "none") 138s > suppressPackageStartupMessages(library(stars)) 139s > 139s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require("raster", quietly = TRUE) && 139s + suppressPackageStartupMessages(require("terra", quietly = TRUE))) { 139s + 139s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 139s + (x = read_stars(tif)) 139s + (r = as(x, "Raster")) 139s + (y = st_as_stars(r)) 139s + 139s + # single band: 139s + x = adrop(x[,,,1]) 139s + r = as(x, "Raster") 139s + (y = st_as_stars(r)) 139s + 139s + # proxy: 139s + (x = read_stars(tif, proxy = TRUE)) 139s + (r = as(x, "Raster")) 139s + (y = st_as_stars(r)) 139s + (y2 = st_as_stars(r, proxy = TRUE)) 139s + } 144s stars_proxy object with 1 attribute in 1 file(s): 144s $L7_ETMs.tif 144s [1] "[...]/L7_ETMs.tif" 144s 144s dimension(s): 144s from to offset delta refsys point x/y 144s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 144s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 144s band 1 6 NA NA NA NA 144s > 144s > if (require(terra, quietly = TRUE)) { 144s + ## terra ------------- 144s + stopifnot(require(terra)) 144s + (x = read_stars(tif)) 144s + (r = as(x, "SpatRaster")) 144s + (y = st_as_stars(r)) 144s + 144s + # single band: 144s + x = adrop(x[,,,1]) 144s + r = as(x, "SpatRaster") 144s + (y = st_as_stars(r)) 144s + 144s + # proxy: 144s + (x = read_stars(tif, proxy = TRUE)) 144s + (r = as(x, "SpatRaster")) 144s + (y = st_as_stars(r)) 144s + (y2 = st_as_stars(r, proxy = TRUE)) 144s + 144s + f = system.file("tif/lc.tif", package = "stars") 144s + lc = read_stars(system.file("tif/lc.tif", package = "stars")) 144s + levels(lc[[1]]) 144s + r = rast(lc) 144s + e = attr(lc[[1]], "exclude") 144s + 144s + if (packageVersion("terra") >= "1.5.48") { 144s + 144s + print(all.equal(terra::levels(r)[[1]][,2], terra::levels(rast(f))[[1]][!e,2])) 144s + print(all.equal(terra::coltab(r)[[1]][!e,], terra::coltab(rast(f))[[1]][!e,], check.attributes = FALSE)) 144s + 144s + r<- rast(nrow=10, ncol=10) 144s + set.seed(5) 144s + values(r)<- sample(1:3, size = ncell(r), replace = TRUE) 144s + levels(r) <- data.frame(ID=1:3, category = c("c1", "c2", "c3")) 144s + 144s + r2<- rast(nrow=10, ncol=10) 144s + set.seed(6) 144s + values(r2)<- sample(c(0,2,3), size = ncell(r2), replace = TRUE) 144s + levels(r2) <- data.frame(ID=c(0,2,3), category = c("x1", "x2", "x3")) 144s + 144s + r3<- c(r,r2) 144s + names(r3)<- c("lyr.1", "lyr.2") 144s + 144s + r3_stars<- st_as_stars(r3) 144s + 144s + st_redimension(r3_stars) |> print() 144s + rast(r3_stars) |> levels() |> print() 144s + 144s + m = matrix(1:121, 11, 11) 144s + bb = st_bbox(c(xmin=0, xmax=11, ymin=0, ymax=11)) 144s + s = st_as_stars(bb, values = m) 144s + r = rast(s) 144s + aggregate(r, 2) |> st_as_stars() -> r.s 144s + stopifnot(isTRUE(all.equal(r.s[,1:5,1:5], st_downsample(s, 1, FUN = mean)))) 144s + } 144s + } 145s [1] TRUE 145s [1] TRUE 145s stars object with 3 dimensions and 1 attribute 145s attribute(s): 145s lyr.1.lyr.2 145s c1:34 145s c2:32 145s c3:34 145s x1:28 145s x2:37 145s x3:35 145s dimension(s): 145s from to offset delta refsys values x/y 145s x 1 10 -180 36 WGS 84 (CRS84) NULL [x] 145s y 1 10 90 -18 WGS 84 (CRS84) NULL [y] 145s new_dim 1 2 NA NA NA lyr.1, lyr.2 145s [[1]] 145s IDs categories 145s 1 1 c1 145s 2 2 c2 145s 3 3 c3 145s 145s [[2]] 145s IDs categories 145s 1 0 x1 145s 2 2 x2 145s 3 3 x3 145s 145s > 145s > 145s BEGIN TEST rasterize.R 145s 145s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 145s Copyright (C) 2024 The R Foundation for Statistical Computing 145s Platform: x86_64-pc-linux-gnu 145s 145s R is free software and comes with ABSOLUTELY NO WARRANTY. 145s You are welcome to redistribute it under certain conditions. 145s Type 'license()' or 'licence()' for distribution details. 145s 145s R is a collaborative project with many contributors. 145s Type 'contributors()' for more information and 145s 'citation()' on how to cite R or R packages in publications. 145s 145s Type 'demo()' for some demos, 'help()' for on-line help, or 145s 'help.start()' for an HTML browser interface to help. 145s Type 'q()' to quit R. 145s 145s > suppressPackageStartupMessages(library(stars)) 146s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf")) 146s > (x = st_rasterize(nc)) # default grid: 146s stars object with 2 dimensions and 12 attributes 146s attribute(s): 147s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 147s AREA 0.042 0.108 0.142 1.451932e-01 0.181 0.241 30904 147s PERIMETER 0.999 1.461 1.716 1.786110e+00 2.004 3.640 30904 147s CNTY_ 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 147s CNTY_ID 1825.000 1907.000 1989.000 1.998403e+03 2085.000 2241.000 30904 147s FIPSNO 37001.000 37049.000 37101.000 3.710042e+04 37153.000 37199.000 30904 147s CRESS_ID 1.000 25.000 51.000 5.071206e+01 77.000 100.000 30904 147s BIR74 248.000 1323.000 2648.000 3.791637e+03 4139.000 21588.000 30904 147s SID74 0.000 3.000 5.000 7.891985e+00 10.000 44.000 30904 147s NWBIR74 1.000 297.000 844.000 1.246210e+03 1396.000 8027.000 30904 147s BIR79 319.000 1606.000 3108.000 4.852046e+03 5400.000 30757.000 30904 147s SID79 0.000 3.000 6.000 9.584098e+00 13.000 57.000 30904 147s NWBIR79 3.000 360.000 1058.000 1.604642e+03 1524.000 11631.000 30904 147s dimension(s): 147s from to offset delta refsys point x/y 147s x 1 461 -84.32 0.01925 NAD27 FALSE [x] 147s y 1 141 36.59 -0.01925 NAD27 FALSE [y] 147s > plot(x, axes = TRUE) 147s > # a bit more customized grid: 147s > (x = st_rasterize(nc, st_as_stars(st_bbox(nc), nx = 100, ny = 50, values = NA_real_))) 147s stars object with 2 dimensions and 12 attributes 147s attribute(s): 147s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 147s AREA 0.042 0.108 0.142 0.145536 0.181 0.241 2373 147s PERIMETER 0.999 1.470 1.716 1.789032 2.004 3.640 2373 147s CNTY_ 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 147s CNTY_ID 1825.000 1908.000 1989.000 1999.761325 2088.000 2241.000 2373 147s FIPSNO 37001.000 37049.000 37101.000 37100.327750 37151.000 37199.000 2373 147s CRESS_ID 1.000 25.000 51.000 50.663875 76.000 100.000 2373 147s BIR74 248.000 1323.500 2648.000 3790.530263 4139.000 21588.000 2373 147s SID74 0.000 3.000 5.000 7.905976 10.000 44.000 2373 147s NWBIR74 1.000 289.000 844.000 1246.116483 1396.000 8027.000 2373 147s BIR79 319.000 1606.000 3108.000 4848.231062 5386.000 30757.000 2373 147s SID79 0.000 3.000 6.000 9.574419 13.000 57.000 2373 147s NWBIR79 3.000 360.000 1058.000 1602.740769 1524.000 11631.000 2373 147s dimension(s): 147s from to offset delta refsys point x/y 147s x 1 100 -84.32 0.08867 NAD27 FALSE [x] 147s y 1 50 36.59 -0.05415 NAD27 FALSE [y] 147s > plot(x, axes = TRUE) 147s > (ls = st_sf(a = 1:2, st_sfc(st_linestring(rbind(c(0.1, 0), c(1.1, 1))), st_linestring(rbind(c(0, 0.05), c(1, 0.05)))))) 147s Simple feature collection with 2 features and 1 field 147s Geometry type: LINESTRING 147s Dimension: XY 147s Bounding box: xmin: 0 ymin: 0 xmax: 1.1 ymax: 1 147s CRS: NA 147s a 147s 1 1 147s 2 2 147s c..st_sfc.st_linestring.rbind.c.0.1..0...c.1.1..1.....st_linestring.rbind.c.0..........0.05...c.1..0.05...... 147s 1 LINESTRING (0.1 0, 1.1 1) 147s 2 LINESTRING (0 0.05, 1 0.05) 147s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = NA_real_)) 147s stars object with 2 dimensions and 1 attribute 147s attribute(s): 147s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 147s values NA NA NA NaN NA NA 100 147s dimension(s): 147s from to offset delta x/y 147s x 1 10 0 0.1 [x] 147s y 1 10 1 -0.1 [y] 147s > # the following two plots confirm that (only) the 147s > # upper-left corner is part of the grid cell (when dy is negative), leading 147s > # to a seemingly half-gridcell-shift problem: 147s > ## sf_extSoftVersion()["GDAL"] 147s > plot(st_rasterize(ls, grd), axes = TRUE, reset = FALSE) # ALL_TOUCHED=FALSE; 147s > plot(ls, add = TRUE, col = "red") 147s > plot(st_rasterize(ls, grd, options = "ALL_TOUCHED=TRUE"), axes = TRUE, reset = FALSE) 147s > plot(ls, add = TRUE, col = "red") 147s > # add lines to existing 0 values, summing values in case of multiple lines: 147s > (grd = st_as_stars(st_bbox(ls), nx = 10, ny = 10, xlim = c(0, 1.0), ylim = c(0, 1), values = 0)) 147s stars object with 2 dimensions and 1 attribute 147s attribute(s): 147s Min. 1st Qu. Median Mean 3rd Qu. Max. 147s values 0 0 0 0 0 0 147s dimension(s): 147s from to offset delta x/y 147s x 1 10 0 0.1 [x] 147s y 1 10 1 -0.1 [y] 147s > r = st_rasterize(ls, grd, options = c("MERGE_ALG=ADD", "ALL_TOUCHED=TRUE")) 147s > plot(r, axes = TRUE, reset = FALSE) 147s > plot(ls, add = TRUE, col = "red") 147s > 147s BEGIN TEST rectilinear.R 147s 147s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 147s Copyright (C) 2024 The R Foundation for Statistical Computing 147s Platform: x86_64-pc-linux-gnu 147s 147s R is free software and comes with ABSOLUTELY NO WARRANTY. 147s You are welcome to redistribute it under certain conditions. 147s Type 'license()' or 'licence()' for distribution details. 147s 147s R is a collaborative project with many contributors. 147s Type 'contributors()' for more information and 147s 'citation()' on how to cite R or R packages in publications. 147s 147s Type 'demo()' for some demos, 'help()' for on-line help, or 147s 'help.start()' for an HTML browser interface to help. 147s Type 'q()' to quit R. 147s 147s > suppressPackageStartupMessages(library(stars)) 148s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 148s > x = read_stars(tif) 148s > (xx = x[,c(1:347,349),c(1:350,352),]) # rectilinear: one-but-last row & col missing 148s stars object with 3 dimensions and 1 attribute 148s attribute(s): 148s Min. 1st Qu. Median Mean 3rd Qu. Max. 148s L7_ETMs.tif 1 54 69 68.9915 86 255 148s dimension(s): 148s from to refsys point 148s x 1 348 SIRGAS 2000 / UTM zone 25S FALSE 148s y 1 351 SIRGAS 2000 / UTM zone 25S FALSE 148s band 1 6 NA NA 148s values x/y 148s x [288790.5,288819),...,[298708.5,298737) [x] 148s y [9120747,9120718),...,[9110743,9110715) [y] 148s band NULL 148s > image(xx) # chooses useRaster itself 148s > # see also tidy.R for a ggplot example, leaving out the row. 148s > 148s > m = matrix(1:16, 4, 4) 148s > x = 1:4 148s > y = 2:5 148s > (st = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y))) 148s stars object with 2 dimensions and 1 attribute 148s attribute(s): 148s Min. 1st Qu. Median Mean 3rd Qu. Max. 148s m 1 4.75 8.5 8.5 12.25 16 148s dimension(s): 148s from to offset delta point x/y 148s x 1 4 1 1 FALSE [x] 148s y 1 4 2 1 FALSE [y] 148s > st = st_set_dimensions(st, 1, values = c(1,2,3,4,6)) 148s > st = st_set_dimensions(st, 2, values = c(2,3,4,5,8)) 148s > try(st_set_dimensions(st, 2, values = c(2,3,4,5,8,20))) # one too many 148s Error in st_set_dimensions(st, 2, values = c(2, 3, 4, 5, 8, 20)) : 148s length of values ( 6 ) does not match length of dimension 2 ( 4 ) 148s > 148s > # $<-.stars: 148s > st$foo = st$m * 2 148s > st 148s stars object with 2 dimensions and 2 attributes 148s attribute(s): 148s Min. 1st Qu. Median Mean 3rd Qu. Max. 148s m 1 4.75 8.5 8.5 12.25 16 148s foo 2 9.50 17.0 17.0 24.50 32 148s dimension(s): 148s from to point values x/y 148s x 1 4 FALSE [1,2),...,[4,6) [x] 148s y 1 4 FALSE [2,3),...,[5,8) [y] 148s > 148s > # st_as_sf: 148s > 148s > if (utils::packageVersion("sf") > "0.7.2") { 148s + plot(st_as_sf(st, as_points = FALSE), axes = TRUE) 148s + } 148s > 148s > image(st, text_values = TRUE, axes = TRUE) 148s > 148s BEGIN TEST redimension.R 148s 148s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 148s Copyright (C) 2024 The R Foundation for Statistical Computing 148s Platform: x86_64-pc-linux-gnu 148s 148s R is free software and comes with ABSOLUTELY NO WARRANTY. 148s You are welcome to redistribute it under certain conditions. 148s Type 'license()' or 'licence()' for distribution details. 148s 148s R is a collaborative project with many contributors. 148s Type 'contributors()' for more information and 148s 'citation()' on how to cite R or R packages in publications. 148s 148s Type 'demo()' for some demos, 'help()' for on-line help, or 148s 'help.start()' for an HTML browser interface to help. 148s Type 'q()' to quit R. 148s 148s > suppressPackageStartupMessages(library(stars)) 149s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 149s > r = read_stars(list(a = c(tif,tif), b = c(tif, tif)), proxy = TRUE) 149s > (xx = st_redimension(r, along = list(foo = 1:4))) 149s stars_proxy object with 1 attribute in 4 file(s): 149s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 149s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 149s [4] "[...]/L7_ETMs.tif" 149s 149s dimension(s): 149s from to offset delta refsys point x/y 149s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 149s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 149s band 1 6 NA NA NA NA 149s foo 1 4 1 1 NA NA 149s > (rr = c(xx, xx)) 149s stars_proxy object with 2 attributes in 8 file(s): 149s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 149s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 149s [4] "[...]/L7_ETMs.tif" 149s 149s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 149s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 149s [4] "[...]/L7_ETMs.tif" 149s 149s dimension(s): 149s from to offset delta refsys point x/y 149s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 149s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 149s band 1 6 NA NA NA NA 149s foo 1 4 1 1 NA NA 149s > # st_as_stars(rr) 149s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 149s stars_proxy object with 1 attribute in 8 file(s): 149s $a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif.a.L7_ETMs.tif.a.L7_ETMs.tif.b.L7_ETMs.tif.b.L7_ETMs.tif 149s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 149s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 149s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 149s 149s dimension(s): 149s from to offset delta refsys point x/y 149s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 149s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 149s band 1 6 NA NA NA NA 149s foo 1 4 1 1 NA NA 149s bar 1 2 2001-01-01 365 days Date NA 149s > (rr = c(a = xx, b = xx)) 149s stars_proxy object with 2 attributes in 8 file(s): 149s $a 149s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 149s [4] "[...]/L7_ETMs.tif" 149s 149s $b 149s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 149s [4] "[...]/L7_ETMs.tif" 149s 149s dimension(s): 149s from to offset delta refsys point x/y 149s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 149s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 149s band 1 6 NA NA NA NA 149s foo 1 4 1 1 NA NA 149s > # st_as_stars(rr) 149s > (rrr = st_redimension(rr, along = list(bar = as.Date(c("2001-01-01", "2002-01-01"))))) 149s stars_proxy object with 1 attribute in 8 file(s): 149s $a.b 149s [1] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 149s [4] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 149s [7] "[...]/L7_ETMs.tif" "[...]/L7_ETMs.tif" 149s 149s dimension(s): 149s from to offset delta refsys point x/y 149s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 149s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 149s band 1 6 NA NA NA NA 149s foo 1 4 1 1 NA NA 149s bar 1 2 2001-01-01 365 days Date NA 149s > 149s BEGIN TEST sf.R 149s 149s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 149s Copyright (C) 2024 The R Foundation for Statistical Computing 149s Platform: x86_64-pc-linux-gnu 149s 149s R is free software and comes with ABSOLUTELY NO WARRANTY. 149s You are welcome to redistribute it under certain conditions. 149s Type 'license()' or 'licence()' for distribution details. 149s 149s R is a collaborative project with many contributors. 149s Type 'contributors()' for more information and 149s 'citation()' on how to cite R or R packages in publications. 149s 149s Type 'demo()' for some demos, 'help()' for on-line help, or 149s 'help.start()' for an HTML browser interface to help. 149s Type 'q()' to quit R. 149s 149s > suppressPackageStartupMessages(library(stars)) 150s > library(sf) 150s > #jp2 = system.file("jp2/B01.jp2", package = "stars") 150s > #(x = read_stars(jp2, options = c("OVERVIEW_LEVEL=3"))) 150s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 150s > #(x = read_stars(tif, options = c("OVERVIEW_LEVEL=3"))) # FIXME: breaks on windows 150s > (x = read_stars(tif)[,1:20,1:20]) 150s stars object with 3 dimensions and 1 attribute 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. 150s L7_ETMs.tif 17 44 58 58.19667 70 130 150s dimension(s): 150s from to offset delta refsys point x/y 150s x 1 20 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 150s y 1 20 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 150s band 1 6 NA NA NA NA 150s > # names(x) = "L7_ETM" 150s > 150s > # library(abind) 150s > # x = adrop(x) 150s > image(x) 150s > (sfc = st_as_sfc(x, as_points = FALSE)) 150s Geometry set for 400 features 150s Geometry type: POLYGON 150s Dimension: XY 150s Bounding box: xmin: 288776.3 ymin: 9120191 xmax: 289346.3 ymax: 9120761 150s Projected CRS: SIRGAS 2000 / UTM zone 25S 150s First 5 geometries: 150s POLYGON ((288776.3 9120761, 288804.8 9120761, 2... 150s POLYGON ((288804.8 9120761, 288833.3 9120761, 2... 150s POLYGON ((288833.3 9120761, 288861.8 9120761, 2... 150s POLYGON ((288861.8 9120761, 288890.3 9120761, 2... 150s > plot(sfc, add =TRUE) 150s POLYGON ((288890.3 9120761, 288918.8 9120761, 2... 150s > (sfc = st_as_sfc(x, as_points = TRUE)) 150s Geometry set for 400 features 150s Geometry type: POINT 150s Dimension: XY 150s Bounding box: xmin: 288790.5 ymin: 9120205 xmax: 289332 ymax: 9120747 150s Projected CRS: SIRGAS 2000 / UTM zone 25S 150s First 5 geometries: 150s POINT (288790.5 9120747) 150s POINT (288819 9120747) 150s POINT (288847.5 9120747) 150s POINT (288876 9120747) 150s > plot(sfc, add = TRUE) 150s POINT (288904.5 9120747) 150s > 150s > sf = st_as_sf(x, as_points = FALSE) 150s > plot(sf, border = NA) 150s > sf = st_as_sf(x[,,,1], as_points = FALSE, merge = TRUE) 150s > plot(sf, border = NA) 150s > 150s > sfc1 <- st_as_sfc(x, as_points = TRUE, use_cpp = TRUE, na.rm = FALSE) 150s > sfc2 <- st_as_sfc(x, as_points = TRUE, use_cpp = FALSE) 150s > identical(sfc1, sfc2) 150s [1] TRUE 150s > 150s > sfc1 <- st_as_sfc(x, as_points = FALSE, use_cpp = TRUE, na.rm = FALSE) 150s > sfc2 <- st_as_sfc(x, as_points = FALSE, use_cpp = FALSE) 150s > identical(sfc1, sfc2) 150s [1] TRUE 150s > 150s > # sf -> stars -> sf 150s > x = st_sfc(st_point(0:1), st_point(1:2), st_point(2:3)) 150s > m = matrix(1:9,3) 150s > colnames(m) = c("a", "b", "c") 150s > foo = st_sf(m, geom = x) 150s > x = st_as_stars(foo) 150s > c(x) 150s stars object with 1 dimensions and 3 attributes 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. 150s a 1 1.5 2 2 2.5 3 150s b 4 4.5 5 5 5.5 6 150s c 7 7.5 8 8 8.5 9 150s dimension(s): 150s from to point values 150s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 150s > st_redimension(x) 150s stars object with 2 dimensions and 1 attribute 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. 150s a.b.c 1 3 5 5 7 9 150s dimension(s): 150s from to point values 150s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 150s new_dim 1 3 NA a, b, c 150s > c(x, x) 150s stars object with 1 dimensions and 6 attributes 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. 150s a 1 1.5 2 2 2.5 3 150s b 4 4.5 5 5 5.5 6 150s c 7 7.5 8 8 8.5 9 150s a.1 1 1.5 2 2 2.5 3 150s b.1 4 4.5 5 5 5.5 6 150s c.1 7 7.5 8 8 8.5 9 150s dimension(s): 150s from to point values 150s geom 1 3 TRUE POINT (0 1),...,POINT (2 3) 150s > (y = st_redimension(x, along = list(time = as.Date("2017-11-27") + 0:2))) 150s stars object with 2 dimensions and 1 attribute 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. 150s a.b.c 1 3 5 5 7 9 150s dimension(s): 150s from to offset delta refsys point values 150s geom 1 3 NA NA NA TRUE POINT (0 1),...,POINT (2 3) 150s time 1 3 2017-11-27 1 days Date NA NULL 150s > st_as_sf(y) 150s Simple feature collection with 3 features and 3 fields 150s Geometry type: POINT 150s Dimension: XY 150s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 150s CRS: NA 150s 2017-11-27 2017-11-28 2017-11-29 geom 150s 1 1 4 7 POINT (0 1) 150s 2 2 5 8 POINT (1 2) 150s 3 3 6 9 POINT (2 3) 150s > st_as_sf(st_as_stars(foo)) 150s Simple feature collection with 3 features and 3 fields 150s Geometry type: POINT 150s Dimension: XY 150s Bounding box: xmin: 0 ymin: 1 xmax: 2 ymax: 3 150s CRS: NA 150s a b c geom 150s 1 1 4 7 POINT (0 1) 150s 2 2 5 8 POINT (1 2) 150s 3 3 6 9 POINT (2 3) 150s > 150s > c(x,x,along=1) # NEEDS FIXING! 150s stars object with 1 dimensions and 3 attributes 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. 150s a 1 1.25 2 2 2.75 3 150s b 4 4.25 5 5 5.75 6 150s c 7 7.25 8 8 8.75 9 150s dimension(s): 150s from to point values 150s geom 1 6 TRUE POINT (0 1),...,POINT (2 3) 150s > # st_as_stars.sfc 150s > st_as_stars(st_geometry(st_as_sf(y)), nx = 10, ny = 10, as_points = FALSE) 150s stars object with 2 dimensions and 1 attribute 150s attribute(s): 150s Min. 1st Qu. Median Mean 3rd Qu. Max. 150s values 0 0 0 0.06 0 1 150s dimension(s): 150s from to offset delta x/y 150s x 1 10 0 0.2 [x] 150s y 1 10 3 -0.2 [y] 150s > 150s BEGIN TEST sp.R 151s 151s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 151s Copyright (C) 2024 The R Foundation for Statistical Computing 151s Platform: x86_64-pc-linux-gnu 151s 151s R is free software and comes with ABSOLUTELY NO WARRANTY. 151s You are welcome to redistribute it under certain conditions. 151s Type 'license()' or 'licence()' for distribution details. 151s 151s R is a collaborative project with many contributors. 151s Type 'contributors()' for more information and 151s 'citation()' on how to cite R or R packages in publications. 151s 151s Type 'demo()' for some demos, 'help()' for on-line help, or 151s 'help.start()' for an HTML browser interface to help. 151s Type 'q()' to quit R. 151s 151s > options(rgdal_show_exportToProj4_warnings = "none") 151s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) { 151s + demo(meuse) 151s + # remove +init=xxx 151s + meuse@proj4string = CRS( 151s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 151s + ) 151s + meuse.grid@proj4string = CRS( 151s + "+proj=sterea +lat_0=52.1561605555556 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +units=m +no_defs" 151s + ) 151s + 151s + suppressPackageStartupMessages(library(stars)) 151s + (m = st_as_stars(meuse)) 151s + (gr = st_as_stars(meuse.grid)) 151s + 151s + m2 = as(m, "Spatial") 151s + summary(m2) 151s + gr2 = as(gr, "Spatial") 151s + summary(gr2) 151s + 151s + all.equal(meuse, m2, check.attributes = FALSE) 151s + fullgrid(meuse.grid) = TRUE 151s + all.equal(meuse.grid, gr2, check.attributes = FALSE) 151s + 151s + #all.equal(meuse, m2) 151s + #all.equal(meuse.grid, gr2) 151s + } 151s 151s 151s demo(meuse) 151s ---- ~~~~~ 151s 151s > require(sp) 151s 151s > crs = CRS("EPSG:28992") 151s 151s > data("meuse") 151s 151s > coordinates(meuse) <- ~x+y 151s 151s > proj4string(meuse) <- crs 151s 151s > data("meuse.grid") 151s 151s > coordinates(meuse.grid) <- ~x+y 151s 151s > gridded(meuse.grid) <- TRUE 151s 151s > proj4string(meuse.grid) <- crs 151s 151s > data("meuse.riv") 151s 151s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 151s 151s > proj4string(meuse.riv) <- crs 151s 151s > data("meuse.area") 151s 151s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 151s 151s > proj4string(meuse.area) <- crs 152s [1] TRUE 152s > 152s BEGIN TEST spacetime.R 152s 152s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 152s Copyright (C) 2024 The R Foundation for Statistical Computing 152s Platform: x86_64-pc-linux-gnu 152s 152s R is free software and comes with ABSOLUTELY NO WARRANTY. 152s You are welcome to redistribute it under certain conditions. 152s Type 'license()' or 'licence()' for distribution details. 152s 152s R is a collaborative project with many contributors. 152s Type 'contributors()' for more information and 152s 'citation()' on how to cite R or R packages in publications. 152s 152s Type 'demo()' for some demos, 'help()' for on-line help, or 152s 'help.start()' for an HTML browser interface to help. 152s Type 'q()' to quit R. 152s 152s > suppressPackageStartupMessages(library(stars)) 152s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(spacetime, quietly = TRUE)) { 152s + set.seed(1331) 152s + Sys.setenv(TZ="UTC") 152s + example(STFDF) 152s + 152s + x = st_as_stars(stfdf) 152s + xx = as(x, "STFDF") 152s + 152s + # as.xts.stars: 152s + library(xts) 152s + xts = as.xts(x) 152s + st_as_stars(xts) 152s + st_as_stars(xts, dimensions = st_dimensions(x)) 152s + 152s + library(sp) 152s + pts = SpatialPoints(rbind(c(0,0), c(0,1), c(1,0), c(1,1))) 152s + gridded(pts) = TRUE 152s + 152s + tm = xts(1:10, as.Date("2010-01-01")+0:9) 152s + stfdf = STFDF(pts, tm, data.frame(foo = seq_len(length(pts) * length(tm)))) 152s + x = st_as_stars(stfdf) 152s + xx = as(x, "STFDF") 152s + 152s + x = st_as_stars(as(stfdf, "STSDF")) 152s + } 153s 153s STFDF> sp = cbind(x = c(0,0,1), y = c(0,1,1)) 153s 153s STFDF> row.names(sp) = paste("point", 1:nrow(sp), sep="") 153s 153s STFDF> library(sp) 153s 153s STFDF> sp = SpatialPoints(sp) 153s 153s STFDF> time = as.POSIXct("2010-08-05")+3600*(10:13) 153s 153s STFDF> m = c(10,20,30) # means for each of the 3 point locations 153s 153s STFDF> mydata = rnorm(length(sp)*length(time),mean=rep(m, 4)) 153s 153s STFDF> IDs = paste("ID",1:length(mydata)) 153s 153s STFDF> mydata = data.frame(values = signif(mydata,3), ID=IDs) 153s 153s STFDF> stfdf = STFDF(sp, time, mydata) 153s 153s STFDF> stfdf 153s An object of class "STFDF" 153s Slot "data": 153s values ID 153s 1 9.38 ID 1 153s 2 21.10 ID 2 153s 3 29.80 ID 3 153s 4 11.50 ID 4 153s 5 19.80 ID 5 153s 6 31.20 ID 6 153s 7 10.40 ID 7 153s 8 20.50 ID 8 153s 9 29.80 ID 9 153s 10 10.30 ID 10 153s 11 21.40 ID 11 153s 12 29.40 ID 12 153s 153s Slot "sp": 153s SpatialPoints: 153s x y 153s point1 0 0 153s point2 0 1 153s point3 1 1 153s Coordinate Reference System (CRS) arguments: NA 153s 153s Slot "time": 153s timeIndex 153s 2010-08-05 10:00:00 1 153s 2010-08-05 11:00:00 2 153s 2010-08-05 12:00:00 3 153s 2010-08-05 13:00:00 4 153s 153s Slot "endTime": 153s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 153s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 153s 153s 153s STFDF> stfdf[1:2,] 153s An object of class "STFDF" 153s Slot "data": 153s values ID 153s 1 9.38 ID 1 153s 2 21.10 ID 2 153s 3 11.50 ID 4 153s 4 19.80 ID 5 153s 5 10.40 ID 7 153s 6 20.50 ID 8 153s 7 10.30 ID 10 153s 8 21.40 ID 11 153s 153s Slot "sp": 153s SpatialPoints: 153s x y 153s point1 0 0 153s point2 0 1 153s Coordinate Reference System (CRS) arguments: NA 153s 153s Slot "time": 153s timeIndex 153s 2010-08-05 10:00:00 1 153s 2010-08-05 11:00:00 2 153s 2010-08-05 12:00:00 3 153s 2010-08-05 13:00:00 4 153s 153s Slot "endTime": 153s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 153s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 153s 153s 153s STFDF> stfdf[,1:2] 153s An object of class "STFDF" 153s Slot "data": 153s values ID 153s 1 9.38 ID 1 153s 2 21.10 ID 2 153s 3 29.80 ID 3 153s 4 11.50 ID 4 153s 5 19.80 ID 5 153s 6 31.20 ID 6 153s 153s Slot "sp": 153s SpatialPoints: 153s x y 153s point1 0 0 153s point2 0 1 153s point3 1 1 153s Coordinate Reference System (CRS) arguments: NA 153s 153s Slot "time": 153s timeIndex 153s 2010-08-05 10:00:00 1 153s 2010-08-05 11:00:00 2 153s 153s Slot "endTime": 153s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 153s 153s 153s STFDF> stfdf[,,2] 153s An object of class "STFDF" 153s Slot "data": 153s ID 153s 1 ID 1 153s 2 ID 2 153s 3 ID 3 153s 4 ID 4 153s 5 ID 5 153s 6 ID 6 153s 7 ID 7 153s 8 ID 8 153s 9 ID 9 153s 10 ID 10 153s 11 ID 11 153s 12 ID 12 153s 153s Slot "sp": 153s SpatialPoints: 153s x y 153s point1 0 0 153s point2 0 1 153s point3 1 1 153s Coordinate Reference System (CRS) arguments: NA 153s 153s Slot "time": 153s timeIndex 153s 2010-08-05 10:00:00 1 153s 2010-08-05 11:00:00 2 153s 2010-08-05 12:00:00 3 153s 2010-08-05 13:00:00 4 153s 153s Slot "endTime": 153s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 153s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 153s 153s 153s STFDF> stfdf[,,"values"] 153s An object of class "STFDF" 153s Slot "data": 153s values 153s 1 9.38 153s 2 21.10 153s 3 29.80 153s 4 11.50 153s 5 19.80 153s 6 31.20 153s 7 10.40 153s 8 20.50 153s 9 29.80 153s 10 10.30 153s 11 21.40 153s 12 29.40 153s 153s Slot "sp": 153s SpatialPoints: 153s x y 153s point1 0 0 153s point2 0 1 153s point3 1 1 153s Coordinate Reference System (CRS) arguments: NA 153s 153s Slot "time": 153s timeIndex 153s 2010-08-05 10:00:00 1 153s 2010-08-05 11:00:00 2 153s 2010-08-05 12:00:00 3 153s 2010-08-05 13:00:00 4 153s 153s Slot "endTime": 153s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 153s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 153s 153s 153s STFDF> stfdf[1,] 153s values ID timeIndex 153s 2010-08-05 10:00:00 9.38 ID 1 1 153s 2010-08-05 11:00:00 11.50 ID 4 2 153s 2010-08-05 12:00:00 10.40 ID 7 3 153s 2010-08-05 13:00:00 10.30 ID 10 4 153s 153s STFDF> stfdf[,2] 153s coordinates values ID 153s 1 (0, 0) 11.5 ID 4 153s 2 (0, 1) 19.8 ID 5 153s 3 (1, 1) 31.2 ID 6 153s 153s STFDF> as(stfdf[,,1], "xts") 153s point1 point2 point3 153s 2010-08-05 10:00:00 9.38 21.1 29.8 153s 2010-08-05 11:00:00 11.50 19.8 31.2 153s 2010-08-05 12:00:00 10.40 20.5 29.8 153s 2010-08-05 13:00:00 10.30 21.4 29.4 153s 153s STFDF> as(stfdf[,,2], "xts") 153s point1 point2 point3 153s 2010-08-05 10:00:00 ID 1 ID 2 ID 3 153s 2010-08-05 11:00:00 ID 4 ID 5 ID 6 153s 2010-08-05 12:00:00 ID 7 ID 8 ID 9 153s 2010-08-05 13:00:00 ID 10 ID 11 ID 12 153s 153s STFDF> # examples for [[, [[<-, $ and $<- 153s STFDF> stfdf[[1]] 153s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 153s 153s STFDF> stfdf[["values"]] 153s [1] 9.38 21.10 29.80 11.50 19.80 31.20 10.40 20.50 29.80 10.30 21.40 29.40 153s 153s STFDF> stfdf[["newVal"]] <- rnorm(12) 153s 153s STFDF> stfdf$ID 153s [1] "ID 1" "ID 2" "ID 3" "ID 4" "ID 5" "ID 6" "ID 7" "ID 8" "ID 9" 153s [10] "ID 10" "ID 11" "ID 12" 153s 153s STFDF> stfdf$ID = paste("OldIDs", 1:12, sep="") 153s 153s STFDF> stfdf$NewID = paste("NewIDs", 12:1, sep="") 153s 153s STFDF> stfdf 153s An object of class "STFDF" 153s Slot "data": 153s values ID newVal NewID 153s 1 9.38 OldIDs1 -0.3125824 NewIDs12 153s 2 21.10 OldIDs2 -1.0536246 NewIDs11 153s 3 29.80 OldIDs3 -0.7188880 NewIDs10 153s 4 11.50 OldIDs4 -1.0525404 NewIDs9 153s 5 19.80 OldIDs5 -0.8441413 NewIDs8 153s 6 31.20 OldIDs6 1.1420848 NewIDs7 153s 7 10.40 OldIDs7 1.9479070 NewIDs6 153s 8 20.50 OldIDs8 -0.4512836 NewIDs5 153s 9 29.80 OldIDs9 0.6695716 NewIDs4 153s 10 10.30 OldIDs10 0.1269003 NewIDs3 153s 11 21.40 OldIDs11 -0.7273297 NewIDs2 153s 12 29.40 OldIDs12 -0.8151803 NewIDs1 153s 153s Slot "sp": 153s SpatialPoints: 153s x y 153s point1 0 0 153s point2 0 1 153s point3 1 1 153s Coordinate Reference System (CRS) arguments: NA 153s 153s Slot "time": 153s timeIndex 153s 2010-08-05 10:00:00 1 153s 2010-08-05 11:00:00 2 153s 2010-08-05 12:00:00 3 153s 2010-08-05 13:00:00 4 153s 153s Slot "endTime": 153s [1] "2010-08-05 11:00:00 UTC" "2010-08-05 12:00:00 UTC" 153s [3] "2010-08-05 13:00:00 UTC" "2010-08-05 14:00:00 UTC" 153s 153s 153s STFDF> x = stfdf[stfdf[1:2,],] 153s 153s STFDF> all.equal(x, stfdf[1:2,]) 153s [1] TRUE 153s 153s STFDF> all.equal(stfdf, stfdf[stfdf,]) # converts character to factor... 153s [1] TRUE 153s Loading required package: zoo 153s 153s Attaching package: 'zoo' 153s 153s The following objects are masked from 'package:base': 153s 153s as.Date, as.Date.numeric 153s 153s only the first attribute will used; maybe use merge() first? 153s > 153s BEGIN TEST spatstat.R 153s 153s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 153s Copyright (C) 2024 The R Foundation for Statistical Computing 153s Platform: x86_64-pc-linux-gnu 153s 153s R is free software and comes with ABSOLUTELY NO WARRANTY. 153s You are welcome to redistribute it under certain conditions. 153s Type 'license()' or 'licence()' for distribution details. 153s 153s R is a collaborative project with many contributors. 153s Type 'contributors()' for more information and 153s 'citation()' on how to cite R or R packages in publications. 153s 153s Type 'demo()' for some demos, 'help()' for on-line help, or 153s 'help.start()' for an HTML browser interface to help. 153s Type 'q()' to quit R. 153s 153s > suppressPackageStartupMessages(library(sf)) 154s > 154s > library(stars) 154s Loading required package: abind 154s > if (suppressPackageStartupMessages(require(spatstat.geom, quietly = TRUE))) { 154s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 154s + s = adrop(read_stars(tif)[,,,1]) > 70 154s + plot(s) 154s + m = as.owin(s) 154s + plot(m) 154s + print(table(m$m)) 154s + } 155s 155s FALSE TRUE 155s 39494 83354 155s > 155s BEGIN TEST stars.R 155s 155s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 155s Copyright (C) 2024 The R Foundation for Statistical Computing 155s Platform: x86_64-pc-linux-gnu 155s 155s R is free software and comes with ABSOLUTELY NO WARRANTY. 155s You are welcome to redistribute it under certain conditions. 155s Type 'license()' or 'licence()' for distribution details. 155s 155s R is a collaborative project with many contributors. 155s Type 'contributors()' for more information and 155s 'citation()' on how to cite R or R packages in publications. 155s 155s Type 'demo()' for some demos, 'help()' for on-line help, or 155s 'help.start()' for an HTML browser interface to help. 155s Type 'q()' to quit R. 155s 156s > Sys.setenv(TZ="UTC") 156s > suppressPackageStartupMessages(library(stars)) 156s > set.seed(13521) # runif 156s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 156s > (x_ = read_stars(c(tif,tif))) # FIXME: not what you'd expect 156s stars object with 3 dimensions and 2 attributes 156s attribute(s): 156s Min. 1st Qu. Median Mean 3rd Qu. Max. 156s L7_ETMs.tif 1 54 69 68.91242 86 255 156s L7_ETMs.tif.1 1 54 69 68.91242 86 255 156s dimension(s): 156s from to offset delta refsys point x/y 156s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 156s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 156s band 1 6 NA NA NA NA 156s > (x = read_stars(tif)) 156s stars object with 3 dimensions and 1 attribute 156s attribute(s): 156s Min. 1st Qu. Median Mean 3rd Qu. Max. 156s L7_ETMs.tif 1 54 69 68.91242 86 255 156s dimension(s): 156s from to offset delta refsys point x/y 156s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 156s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 156s band 1 6 NA NA NA NA 156s > # image(x) 156s > gdal_crs(tif) 156s Coordinate Reference System: 156s User input: PROJCS["SIRGAS 2000 / UTM zone 25S",GEOGCS["SIRGAS 2000",DATUM["Sistema_de_Referencia_Geocentrico_para_las_AmericaS_2000",SPHEROID["GRS 1980",6378137,298.257222101,AUTHORITY["EPSG","7019"]],AUTHORITY["EPSG","6674"]],PRIMEM["Greenwich",0,AUTHORITY["EPSG","8901"]],UNIT["degree",0.0174532925199433,AUTHORITY["EPSG","9122"]],AUTHORITY["EPSG","4674"]],PROJECTION["Transverse_Mercator"],PARAMETER["latitude_of_origin",0],PARAMETER["central_meridian",-33],PARAMETER["scale_factor",0.9996],PARAMETER["false_easting",500000],PARAMETER["false_northing",10000000],UNIT["metre",1,AUTHORITY["EPSG","9001"]],AXIS["Easting",EAST],AXIS["Northing",NORTH],AUTHORITY["EPSG","31985"]] 156s wkt: 156s PROJCRS["SIRGAS 2000 / UTM zone 25S", 156s BASEGEOGCRS["SIRGAS 2000", 156s DATUM["Sistema de Referencia Geocentrico para las AmericaS 2000", 156s ELLIPSOID["GRS 1980",6378137,298.257222101, 156s LENGTHUNIT["metre",1]]], 156s PRIMEM["Greenwich",0, 156s ANGLEUNIT["degree",0.0174532925199433]], 156s ID["EPSG",4674]], 156s CONVERSION["UTM zone 25S", 156s METHOD["Transverse Mercator", 156s ID["EPSG",9807]], 156s PARAMETER["Latitude of natural origin",0, 156s ANGLEUNIT["degree",0.0174532925199433], 156s ID["EPSG",8801]], 156s PARAMETER["Longitude of natural origin",-33, 156s ANGLEUNIT["degree",0.0174532925199433], 156s ID["EPSG",8802]], 156s PARAMETER["Scale factor at natural origin",0.9996, 156s SCALEUNIT["unity",1], 156s ID["EPSG",8805]], 156s PARAMETER["False easting",500000, 156s LENGTHUNIT["metre",1], 156s ID["EPSG",8806]], 156s PARAMETER["False northing",10000000, 156s LENGTHUNIT["metre",1], 156s ID["EPSG",8807]]], 156s CS[Cartesian,2], 156s AXIS["easting",east, 156s ORDER[1], 156s LENGTHUNIT["metre",1]], 156s AXIS["northing",north, 156s ORDER[2], 156s LENGTHUNIT["metre",1]], 156s ID["EPSG",31985]] 156s > plot(x) 157s > plot(x, join_zlim = FALSE) 157s > x %>% st_set_dimensions(names = c('a', 'b', 'c')) 157s stars object with 3 dimensions and 1 attribute 157s attribute(s): 157s Min. 1st Qu. Median Mean 3rd Qu. Max. 157s L7_ETMs.tif 1 54 69 68.91242 86 255 157s dimension(s): 157s from to offset delta refsys point x/y 157s a 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 157s b 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 157s c 1 6 NA NA NA NA 157s > st_get_dimension_values(x, 3) 157s [1] 1 2 3 4 5 6 157s > 157s > (x1 = st_set_dimensions(x, "band", values = c(1,2,3,4,5,7), names = "band_number", point = TRUE)) 157s stars object with 3 dimensions and 1 attribute 157s attribute(s): 157s Min. 1st Qu. Median Mean 3rd Qu. Max. 157s L7_ETMs.tif 1 54 69 68.91242 86 255 157s dimension(s): 157s from to offset delta refsys point values x/y 157s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 157s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 157s band_number 1 6 NA NA NA TRUE 1,...,7 157s > rbind(c(0.45,0.515), c(0.525,0.605), c(0.63,0.69), c(0.775,0.90), c(1.55,1.75), c(2.08,2.35)) %>% 157s + units::set_units(um) -> bw # units::set_units(µm) -> bw 157s > # set bandwidth midpoint: 157s > (x2 = st_set_dimensions(x, "band", values = 0.5 * (bw[,1]+bw[,2]), 157s + names = "bandwidth_midpoint", point = TRUE)) 157s stars object with 3 dimensions and 1 attribute 157s attribute(s): 157s Min. 1st Qu. Median Mean 3rd Qu. Max. 157s L7_ETMs.tif 1 54 69 68.91242 86 255 157s dimension(s): 157s from to offset delta refsys point 157s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 157s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 157s bandwidth_midpoint 1 6 NA NA udunits TRUE 157s values x/y 157s x NULL [x] 157s y NULL [y] 157s bandwidth_midpoint 0.4825 [um],...,2.215 [um] 157s > # set bandwidth intervals: 157s > (x3 = st_set_dimensions(x, "band", values = make_intervals(bw), names = "bandwidth")) 157s stars object with 3 dimensions and 1 attribute 157s attribute(s): 157s Min. 1st Qu. Median Mean 3rd Qu. Max. 157s L7_ETMs.tif 1 54 69 68.91242 86 255 157s dimension(s): 157s from to offset delta refsys point 157s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE 157s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE 157s bandwidth 1 6 NA NA udunits NA 157s values x/y 157s x NULL [x] 157s y NULL [y] 157s bandwidth [0.45,0.515) [um],...,[2.08,2.35) [um] 157s > 157s > x + x 157s stars object with 3 dimensions and 1 attribute 157s attribute(s): 157s Min. 1st Qu. Median Mean 3rd Qu. Max. 157s L7_ETMs.tif 2 108 138 137.8248 172 510 157s dimension(s): 157s from to offset delta refsys point x/y 157s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 157s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 157s band 1 6 NA NA NA NA 157s > x * x 157s stars object with 3 dimensions and 1 attribute 157s attribute(s): 157s Min. 1st Qu. Median Mean 3rd Qu. Max. 157s L7_ETMs.tif 1 2916 4761 5512.41 7396 65025 157s dimension(s): 157s from to offset delta refsys point x/y 157s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 157s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 157s band 1 6 NA NA NA NA 157s > x[,,,1:3] 157s stars object with 3 dimensions and 1 attribute 157s attribute(s): 157s Min. 1st Qu. Median Mean 3rd Qu. Max. 157s L7_ETMs.tif 21 58 70 70.36041 83 255 157s dimension(s): 158s from to offset delta refsys point x/y 158s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 158s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 158s band 1 3 NA NA NA NA 158s > x[,1:100,100:200,] 158s stars object with 3 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. 158s L7_ETMs.tif 13 54 65 67.21531 77 252 158s dimension(s): 158s from to offset delta refsys point x/y 158s x 1 100 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 158s y 100 200 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 158s band 1 6 NA NA NA NA 158s > sqrt(x) 158s stars object with 3 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. 158s L7_ETMs.tif 1 7.348469 8.306624 8.094006 9.273618 15.96872 158s dimension(s): 158s from to offset delta refsys point x/y 158s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 158s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 158s band 1 6 NA NA NA NA 158s > st_apply(x, 3, min) 158s stars object with 1 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. 158s min 1 3 15 18.5 29.25 47 158s dimension(s): 158s from to 158s band 1 6 158s > st_apply(x, 1:2, max) 158s stars object with 2 dimensions and 1 attribute 158s attribute(s): 158s Min. 1st Qu. Median Mean 3rd Qu. Max. 158s max 55 85 96 99.36018 113 255 158s dimension(s): 158s from to offset delta refsys point x/y 158s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 158s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 158s > st_apply(x, 1:2, range) 159s stars object with 3 dimensions and 1 attribute 159s attribute(s): 159s Min. 1st Qu. Median Mean 3rd Qu. Max. 159s L7_ETMs.tif 1 50 71 72.43565 96 255 159s dimension(s): 159s from to offset delta refsys point x/y 159s range 1 2 NA NA NA NA 159s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 159s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 159s > 159s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 159s > x = read_stars(geomatrix) 159s > y = st_transform(x, st_crs(4326)) 159s > st_coordinates(x)[1:2,] 159s x y 159s 1 1841000 1144000 159s 2 1841002 1143995 159s > 159s > nc = system.file("nc/tos_O1_2001-2002.nc", package = "stars") 159s > if (nc != "" && require(PCICt, quietly = TRUE)) { 159s + print(x <- read_stars(nc)) 159s + print(st_bbox(x)) 159s + s = st_as_stars(st_bbox(x)) # inside = NA 159s + print(st_bbox(s)) 159s + s = st_as_stars(st_bbox(x), inside = TRUE) 159s + print(st_bbox(s)) 159s + s = st_as_stars(st_bbox(x), inside = FALSE) 159s + print(st_bbox(s)) 159s + (s = st_as_stars(st_bbox(x), dy = 1)) 159s + print(st_bbox(s)) 159s + print(identical(st_as_stars(st_bbox(x), dx = 1), st_as_stars(st_bbox(x), dy = 1))) 159s + s = st_as_stars(st_bbox(x), dx = 10) 159s + print(st_bbox(s)) 159s + s = st_as_stars(st_bbox(x), dx = 20) 159s + print(st_bbox(s)) 159s + x1 = x 159s + st_crs(x1) = "OGC:CRS84" 159s + print(identical(st_as_stars(st_bbox(x1), dx = 1), st_as_stars(st_bbox(x1), dx = units::set_units(1, degree)))) 159s + 159s + df = as.data.frame(x) 159s + if (require(units, quietly = TRUE)) 159s + print(units::drop_units(x)) 159s + 159s + print(dimnames(x)) 159s + dimnames(x) <- letters[1:3] 159s + print(dimnames(x)) 159s + } # PCICt 159s > 159s > st_as_stars() 159s stars object with 2 dimensions and 1 attribute 159s attribute(s): 159s Min. 1st Qu. Median Mean 3rd Qu. Max. 159s values 0 0 0 0 0 0 159s dimension(s): 159s from to offset delta refsys x/y 159s x 1 360 -180 1 WGS 84 (CRS84) [x] 159s y 1 180 90 -1 WGS 84 (CRS84) [y] 159s > 159s > # multiple sub-datasets: 159s > nc_red = system.file("nc/reduced.nc", package = "stars") 159s > red = read_stars(nc_red) 159s sst, anom, err, ice, 159s > red 159s stars object with 4 dimensions and 4 attributes 159s attribute(s): 159s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 159s sst [degree_Celsius] -1.80 -0.03 13.655 12.9940841 24.8125 32.97 4448 159s anom [degree_Celsius] -10.16 -0.58 -0.080 -0.1855812 0.2100 2.99 4448 159s err [degree_Celsius] 0.11 0.16 0.270 0.2626872 0.3200 0.84 4448 159s ice [percent] 0.01 0.47 0.920 0.7178118 0.9600 1.00 13266 159s dimension(s): 159s from to offset delta refsys x/y 159s x 1 180 -1 2 NA [x] 159s y 1 90 90 -2 NA [y] 159s zlev 1 1 0 [m] NA NA 159s time 1 1 1981-12-31 UTC NA POSIXct 159s > plot(red) 159s > 159s > x = st_xy2sfc(read_stars(tif)[,1:10,1:10,], as_points = FALSE) 159s > st_bbox(x) 159s xmin ymin xmax ymax 159s 288776.3 9120475.8 289061.3 9120760.8 159s > x = read_stars(tif) 159s > merge(split(x, "band")) 159s stars object with 3 dimensions and 1 attribute 159s attribute(s): 159s Min. 1st Qu. Median Mean 3rd Qu. Max. 159s X1.X2.X3.X4.X5.X6 1 54 69 68.91242 86 255 159s dimension(s): 160s from to offset delta refsys point values 160s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 160s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL 160s attributes 1 6 NA NA NA NA X1,...,X6 160s x/y 160s x [x] 160s y [y] 160s attributes 160s > 160s > read_stars(c(tif,tif)) # merges as attributes 160s stars object with 3 dimensions and 2 attributes 160s attribute(s): 160s Min. 1st Qu. Median Mean 3rd Qu. Max. 160s L7_ETMs.tif 1 54 69 68.91242 86 255 160s L7_ETMs.tif.1 1 54 69 68.91242 86 255 160s dimension(s): 160s from to offset delta refsys point x/y 160s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 160s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 160s band 1 6 NA NA NA NA 160s > read_stars(c(tif,tif), along = "sensor") 160s stars object with 4 dimensions and 1 attribute 160s attribute(s), summary of first 1e+05 cells: 160s Min. 1st Qu. Median Mean 3rd Qu. Max. 160s L7_ETMs.tif 47 65 76 77.3419 87 255 160s dimension(s): 160s from to offset delta refsys point x/y 160s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 160s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 160s band 1 6 NA NA NA NA 160s sensor 1 2 NA NA NA NA 160s > read_stars(c(tif,tif), along = 4) 160s stars object with 4 dimensions and 1 attribute 160s attribute(s), summary of first 1e+05 cells: 160s Min. 1st Qu. Median Mean 3rd Qu. Max. 160s L7_ETMs.tif 47 65 76 77.3419 87 255 160s dimension(s): 160s from to offset delta refsys point x/y 160s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 160s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 160s band 1 6 NA NA NA NA 160s new_dim 1 2 NA NA NA NA 160s > read_stars(c(tif,tif), along = "band") 160s stars object with 3 dimensions and 1 attribute 160s attribute(s), summary of first 1e+05 cells: 160s Min. 1st Qu. Median Mean 3rd Qu. Max. 160s L7_ETMs.tif 47 65 76 77.3419 87 255 160s dimension(s): 160s from to offset delta refsys point x/y 160s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 160s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 160s band 1 12 NA NA NA NA 160s > read_stars(c(tif,tif), along = 3) 160s stars object with 3 dimensions and 1 attribute 160s attribute(s), summary of first 1e+05 cells: 160s Min. 1st Qu. Median Mean 3rd Qu. Max. 160s L7_ETMs.tif 47 65 76 77.3419 87 255 160s dimension(s): 160s from to offset delta refsys point x/y 160s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 160s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 160s band 1 12 NA NA NA NA 160s > 160s > # cut: 160s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 160s > x = read_stars(tif) 160s > cut(x, c(0, 50, 100, 255)) 160s stars object with 3 dimensions and 1 attribute 160s attribute(s): 160s L7_ETMs.tif 160s (0,50] :156060 160s (50,100] :503764 160s (100,255]: 77264 160s dimension(s): 160s from to offset delta refsys point x/y 160s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 160s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 160s band 1 6 NA NA NA NA 160s > cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255)) 160s stars object with 2 dimensions and 1 attribute 160s attribute(s): 160s L7_ETMs.tif 160s (0,50] : 1 160s (50,100] :117134 160s (100,255]: 5713 160s dimension(s): 161s from to offset delta refsys point x/y 161s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 161s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 161s > plot(cut(x[,,,1,drop=TRUE], c(0, 50, 100, 255))) 161s > 161s > st_bbox(st_dimensions(x)) 161s xmin ymin xmax ymax 161s 288776.3 9110728.8 298722.8 9120760.8 161s > x[x < 0] = NA 161s > x[is.na(x)] = 0 161s > 161s > # c: 161s > f = system.file("netcdf/avhrr-only-v2.19810902.nc", package = "starsdata") 161s > if (FALSE && f != "") { 161s + files = c("avhrr-only-v2.19810901.nc", 161s + "avhrr-only-v2.19810902.nc", 161s + "avhrr-only-v2.19810903.nc", 161s + "avhrr-only-v2.19810904.nc", 161s + "avhrr-only-v2.19810905.nc", 161s + "avhrr-only-v2.19810906.nc", 161s + "avhrr-only-v2.19810907.nc", 161s + "avhrr-only-v2.19810908.nc", 161s + "avhrr-only-v2.19810909.nc") 161s + l = list() 161s + for (f in files) { 161s + from = system.file(paste0("netcdf/", f), package = "starsdata") 161s + l[[f]] = read_stars(from, sub = c("sst", "anom")) 161s + } 161s + ret = do.call(c, l) 161s + print(ret) 161s + ret = adrop(c(l[[1]], l[[2]], l[[3]], along = list(times = as.Date("1981-09-01") + 0:2))) 161s + print(ret) 161s + #ret = adrop(adrop(c(l[[1]], l[[2]], l[[3]], along = "times"))) 161s + #print(ret) 161s + } 161s > 161s > st_dimensions(list(matrix(1, 4, 4))) # st_dimensions.default 161s from to point values 161s X1 1 1 FALSE 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 161s > 161s > if (FALSE && require("starsdata", quietly = TRUE)) { 161s + # curvilinear: 161s + s5p = system.file( 161s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 161s + package = "starsdata") 161s + print(s5p) 161s + lat_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/latitude") 161s + lon_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/longitude") 161s + nit_ds = paste0("HDF5:\"", s5p, "\"://PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column") 161s + lat = read_stars(lat_ds) 161s + lon = read_stars(lon_ds) 161s + nit = read_stars(nit_ds) 161s + nit[[1]][nit[[1]] > 9e+36] = NA 161s + 161s + ll = setNames(c(lon, lat), c("x", "y")) 161s + nit.c = st_as_stars(nit, curvilinear = ll) 161s + print(nit.c) 161s + 161s + s5p = system.file( 161s + "sentinel5p/S5P_NRTI_L2__NO2____20180717T120113_20180717T120613_03932_01_010002_20180717T125231.nc", 161s + package = "starsdata") 161s + nit.c2 = read_stars(s5p, 161s + sub = "//PRODUCT/SUPPORT_DATA/DETAILED_RESULTS/nitrogendioxide_summed_total_column", 161s + curvilinear = c("//PRODUCT/latitude", "//PRODUCT/longitude")) 161s + print(all.equal(nit.c, nit.c2)) 161s + } 161s > 161s BEGIN TEST subset.R 161s 161s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 161s Copyright (C) 2024 The R Foundation for Statistical Computing 161s Platform: x86_64-pc-linux-gnu 161s 161s R is free software and comes with ABSOLUTELY NO WARRANTY. 161s You are welcome to redistribute it under certain conditions. 161s Type 'license()' or 'licence()' for distribution details. 161s 161s R is a collaborative project with many contributors. 161s Type 'contributors()' for more information and 161s 'citation()' on how to cite R or R packages in publications. 161s 161s Type 'demo()' for some demos, 'help()' for on-line help, or 161s 'help.start()' for an HTML browser interface to help. 161s Type 'q()' to quit R. 161s 161s > suppressPackageStartupMessages(library(stars)) 161s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 161s > x = read_stars(tif) 161s > y = st_set_dimensions(x, "band", point = TRUE) 161s > y[,1:10, 1:10, c(1,4,3,2)] 161s stars object with 3 dimensions and 1 attribute 161s attribute(s): 161s Min. 1st Qu. Median Mean 3rd Qu. Max. 161s L7_ETMs.tif 25 45 57 56.535 64 97 161s dimension(s): 161s from to offset delta refsys point values x/y 161s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 161s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 161s band 1 4 NA NA NA TRUE 1,...,2 161s > y = st_set_dimensions(x, "band", point = NA) 161s > y[,1:10, 1:10, c(1,4,3,2)] 161s stars object with 3 dimensions and 1 attribute 161s attribute(s): 161s Min. 1st Qu. Median Mean 3rd Qu. Max. 161s L7_ETMs.tif 25 45 57 56.535 64 97 161s dimension(s): 161s from to offset delta refsys point values x/y 161s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 161s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 161s band 1 4 NA NA NA NA [1,2),...,[2,3) 161s > y = st_set_dimensions(x, "band", point = FALSE) 161s > y[,1:10, 1:10, c(1,4,3,2)] 161s stars object with 3 dimensions and 1 attribute 161s attribute(s): 161s Min. 1st Qu. Median Mean 3rd Qu. Max. 161s L7_ETMs.tif 25 45 57 56.535 64 97 161s dimension(s): 161s from to offset delta refsys point values x/y 161s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 161s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 161s band 1 4 NA NA NA FALSE [1,2),...,[2,3) 161s > y = st_set_dimensions(x, "band", values = letters[1:6]) 161s > y[,1:10, 1:10, c(1,4,3,2)] 161s stars object with 3 dimensions and 1 attribute 161s attribute(s): 161s Min. 1st Qu. Median Mean 3rd Qu. Max. 161s L7_ETMs.tif 25 45 57 56.535 64 97 161s dimension(s): 162s from to offset delta refsys point values x/y 162s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 162s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 162s band 1 4 NA NA NA NA a,...,b 162s > y = st_set_dimensions(x, "band", values = letters[1:6], point = NA) 162s > y[,1:10, 1:10, c(1,4,3,2)] 162s stars object with 3 dimensions and 1 attribute 162s attribute(s): 162s Min. 1st Qu. Median Mean 3rd Qu. Max. 162s L7_ETMs.tif 25 45 57 56.535 64 97 162s dimension(s): 162s from to offset delta refsys point values x/y 162s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 162s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 162s band 1 4 NA NA NA NA a,...,b 162s > y = st_set_dimensions(x, "band", values = letters[1:6], point = TRUE) 162s > y[,1:10, 1:10, c(1,4,3,2)] 162s stars object with 3 dimensions and 1 attribute 162s attribute(s): 162s Min. 1st Qu. Median Mean 3rd Qu. Max. 162s L7_ETMs.tif 25 45 57 56.535 64 97 162s dimension(s): 162s from to offset delta refsys point values x/y 162s x 1 10 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [x] 162s y 1 10 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE NULL [y] 162s band 1 4 NA NA NA TRUE a,...,b 162s > 162s BEGIN TEST testthat.R 162s 162s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 162s Copyright (C) 2024 The R Foundation for Statistical Computing 162s Platform: x86_64-pc-linux-gnu 162s 162s R is free software and comes with ABSOLUTELY NO WARRANTY. 162s You are welcome to redistribute it under certain conditions. 162s Type 'license()' or 'licence()' for distribution details. 162s 162s R is a collaborative project with many contributors. 162s Type 'contributors()' for more information and 162s 'citation()' on how to cite R or R packages in publications. 162s 162s Type 'demo()' for some demos, 'help()' for on-line help, or 162s 'help.start()' for an HTML browser interface to help. 162s Type 'q()' to quit R. 162s 162s > ## load dependencies 162s > library(testthat) 162s > suppressPackageStartupMessages(library(stars)) 162s > 162s > ## test package 162s > test_check("stars") 168s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 168s 168s == Skipped tests (5) =========================================================== 168s * On CRAN (4): 'test-OpenStreetMap.R:2:3', 'test-ncdf.R:1:1', 168s 'test-ncproxy.R:1:1', 'test-rectilinear.R:89:3' 168s * {cubble} is not installed (1): 'test-cubble.R:2:3' 168s 168s [ FAIL 0 | WARN 0 | SKIP 5 | PASS 69 ] 168s > 168s BEGIN TEST tidy.R 168s 168s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 168s Copyright (C) 2024 The R Foundation for Statistical Computing 168s Platform: x86_64-pc-linux-gnu 168s 168s R is free software and comes with ABSOLUTELY NO WARRANTY. 168s You are welcome to redistribute it under certain conditions. 168s Type 'license()' or 'licence()' for distribution details. 168s 168s R is a collaborative project with many contributors. 168s Type 'contributors()' for more information and 168s 'citation()' on how to cite R or R packages in publications. 168s 168s Type 'demo()' for some demos, 'help()' for on-line help, or 168s 'help.start()' for an HTML browser interface to help. 168s Type 'q()' to quit R. 168s 169s > suppressPackageStartupMessages(library(stars)) 169s > 169s > if (require(dplyr, quietly = TRUE)) { 169s + tif = system.file("tif/L7_ETMs.tif", package = "stars") 169s + x <- read_stars(tif) 169s + (y <- x %>% select(L7_ETMs.tif)) 169s + (y <- x %>% filter(band > 2)) 169s + (z <- x %>% mutate(foo = 2* L7_ETMs.tif)) 169s + x %>% pull(L7_ETMs.tif) %>% class() 169s + x %>% filter(x > 289900) 169s + x %>% slice("x", 50:100) 169s + 169s + suppressPackageStartupMessages(library(ggplot2)) 169s + ggplot() + geom_stars(data = x) + coord_equal() + facet_wrap(~band) 169s + ggplot() + geom_stars(data = x[,c(1:50,52:100),c(1:45, 50:60)]) + 169s + coord_equal() 169s + ggplot() + geom_stars(data = x[,1:10,1:10,1:2], sf = TRUE) + facet_wrap(~band) 169s + 169s + 169s + # see https://github.com/r-spatial/stars/issues/539 : 169s + x <- read_stars(system.file("tif/L7_ETMs.tif", package = "stars")) 169s + y <- transmute(x, L7_ETMs.tif = units::set_units(L7_ETMs.tif, degree_C)) # same as x but with units 169s + 169s + x - slice(x, 'band', 1) # runs as expected, recycling the second object 169s + try(y - slice(x, 'band', 1)) # fails as expected because x is unitless 169s + try(x - slice(y, 'band', 1)) # fails as expected 169s + y - slice(y, 'band', 1) # runs as expected 169s + } 169s 169s Attaching package: 'dplyr' 169s 169s The following objects are masked from 'package:stats': 169s 169s filter, lag 169s 169s The following objects are masked from 'package:base': 169s 169s intersect, setdiff, setequal, union 169s 170s Error in Ops.units(X[[i]], ...) : 170s both operands of the expression should be "units" objects 170s Error in Ops.units(X[[i]], ...) : 170s both operands of the expression should be "units" objects 170s stars object with 3 dimensions and 1 attribute 170s attribute(s): 170s Min. 1st Qu. Median Mean 3rd Qu. Max. 170s L7_ETMs.tif [degree_Celsius] -184 -19 -8 -10.2353 0 131 170s dimension(s): 170s from to offset delta refsys point x/y 170s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 170s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 170s band 1 6 NA NA NA NA 170s > 170s BEGIN TEST transform.R 170s 170s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 170s Copyright (C) 2024 The R Foundation for Statistical Computing 170s Platform: x86_64-pc-linux-gnu 170s 170s R is free software and comes with ABSOLUTELY NO WARRANTY. 170s You are welcome to redistribute it under certain conditions. 170s Type 'license()' or 'licence()' for distribution details. 170s 170s R is a collaborative project with many contributors. 170s Type 'contributors()' for more information and 170s 'citation()' on how to cite R or R packages in publications. 170s 170s Type 'demo()' for some demos, 'help()' for on-line help, or 170s 'help.start()' for an HTML browser interface to help. 170s Type 'q()' to quit R. 170s 170s > suppressPackageStartupMessages(library(stars)) 171s > #suppressPackageStartupMessages(library(lwgeom)) 171s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 171s > (x = read_stars(geomatrix)) 171s stars object with 2 dimensions and 1 attribute 171s attribute(s): 171s Min. 1st Qu. Median Mean 3rd Qu. Max. 171s geomatrix.tif 74 107 123 126.765 132 255 171s dimension(s): 171s from to offset delta refsys point x/y 171s x 1 20 1841002 1.5 WGS 84 / UTM zone 11N TRUE [x] 171s y 1 20 1144003 -1.5 WGS 84 / UTM zone 11N TRUE [y] 171s sheared raster with parameters: -5 -5 171s > new = st_crs(4326) 171s > y = st_transform(x, new) 171s > plot(st_transform(st_as_sfc(st_bbox(x)), new), col = NA, border = 'red') 171s > plot(st_as_sfc(y, as_points=FALSE), col = NA, border = 'green', axes = TRUE, add = TRUE) 171s > image(y, add = TRUE) 171s > plot(st_as_sfc(y, as_points=TRUE), pch=3, cex=.5, col = 'blue', add = TRUE) 171s > plot(st_transform(st_as_sfc(x, as_points=FALSE), new), add = TRUE) 171s > 171s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 171s > x = read_stars(tif)[,1:10,1:10,1:3] 171s > x_ = st_transform(x, st_crs(4326)) 171s > ## IGNORE_RDIFF_BEGIN 171s > if (require(lwgeom, quietly = TRUE)) { 171s + x__ = st_transform_proj(x, st_crs(4326)$proj4string) 171s + st_crs(x_) = st_crs(x__) 171s + print(all.equal(x_,x__)) 171s + 171s + # x__ = st_transform(x, x_) #now in st_warp 171s + # all.equal(x_, x__) 171s + 171s + x = st_xy2sfc(x, as_points = FALSE) 171s + (x_ = st_transform(x, st_crs(4326))) 171s + (x__ = st_transform_proj(x, st_crs(4326))) 171s + print(all.equal(x_,x__,check.attributes = FALSE)) 171s + } 171s Linking to liblwgeom 3.0.0beta1 r16016, GEOS 3.13.0, PROJ 9.5.1 171s 171s Attaching package: 'lwgeom' 171s 171s The following object is masked from 'package:sf': 171s 171s st_perimeter 171s 171s [1] TRUE 171s [1] TRUE 171s > ## IGNORE_RDIFF_END 171s > 171s > # nothing to transform: now errs: 171s > try(st_transform(st_as_stars(list(m = matrix(1,10,10))), st_crs(4326))) 171s > try(st_transform_proj(st_as_stars(list(m = matrix(1,10,10))), st_crs(4326))) 171s Error in st_transform.stars(st_as_stars(list(m = matrix(1, 10, 10))), : 171s !is.na(st_crs(x)) is not TRUE 171s > 171s Error in st_transform_proj.stars(st_as_stars(list(m = matrix(1, 10, 10))), : 171s !is.na(st_crs(x)) is not TRUE 171s BEGIN TEST warp.R 171s 171s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 171s Copyright (C) 2024 The R Foundation for Statistical Computing 171s Platform: x86_64-pc-linux-gnu 171s 171s R is free software and comes with ABSOLUTELY NO WARRANTY. 171s You are welcome to redistribute it under certain conditions. 171s Type 'license()' or 'licence()' for distribution details. 171s 171s R is a collaborative project with many contributors. 171s Type 'contributors()' for more information and 171s 'citation()' on how to cite R or R packages in publications. 171s 171s Type 'demo()' for some demos, 'help()' for on-line help, or 171s 'help.start()' for an HTML browser interface to help. 171s Type 'q()' to quit R. 171s 171s > suppressPackageStartupMessages(library(stars)) 172s > geomatrix = system.file("tif/geomatrix.tif", package = "stars") 172s > x = read_stars(geomatrix) 172s > # can stars reproduce what gdal does, by default? 172s > x2 = st_warp(x, use_gdal = TRUE, no_data_value = -9999) 172s > y = st_warp(x, x2) 172s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE) } 172s > if (interactive()) { plot(y, breaks = "equal", axes=TRUE) } 172s > names(x2) = names(y) 172s > all.equal(x2, y) # yes? 172s [1] TRUE 172s > 172s > # does gdal reproduce with stars template object? 172s > (x2 = setNames(st_warp(x, y, use_gdal = TRUE, no_data_value=-1), "file.tif")) 172s stars object with 2 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 172s file.tif 74 115 123 126.4289 132 255 224 172s dimension(s): 172s from to offset delta refsys point x/y 172s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 172s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 172s > 172s > # does gdal reproduce what stars does, default cell size? 172s > (x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE)) 172s stars object with 2 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 172s geomatrix.tif 74 115 123 126.4289 132 255 224 172s dimension(s): 172s from to offset delta refsys x/y 172s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N [x] 172s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N [y] 172s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 172s stars object with 2 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 172s file.tif 74 115 123 126.4289 132 255 224 172s dimension(s): 172s from to offset delta refsys point x/y 172s x 1 25 1840902 5.22 WGS 84 / UTM zone 11N FALSE [x] 172s y 1 25 1144003 -5.22 WGS 84 / UTM zone 11N FALSE [y] 172s > 172s > # try with multiple bands: 172s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 172s > (x1 = read_stars(tif)) 172s stars object with 3 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s L7_ETMs.tif 1 54 69 68.91242 86 255 172s dimension(s): 172s from to offset delta refsys point x/y 172s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 172s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 172s band 1 6 NA NA NA NA 172s > tifcp = tempfile(fileext = ".tif") 172s > file.copy(tif, tifcp) 172s [1] TRUE 172s > x1p = read_stars(tifcp, proxy = TRUE) 172s > st_dimensions(x1p) 172s from to offset delta refsys point x/y 172s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 172s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 172s band 1 6 NA NA NA NA 172s > (x1a = st_warp(x1, crs = st_crs(4326))) 172s stars object with 3 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 172s L7_ETMs.tif 1 54 69 68.93072 86 255 8778 172s dimension(s): 172s from to offset delta refsys x/y 172s x 1 350 -34.92 0.0002592 WGS 84 [x] 172s y 1 352 -7.95 -0.0002592 WGS 84 [y] 172s band 1 6 NA NA NA 172s > (x1b = setNames(st_warp(x1, x1p, use_gdal = TRUE, no_data_value=-1), "file.tif")) 172s stars object with 3 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. 172s file.tif 1 54 69 68.91242 86 255 172s dimension(s): 172s from to offset delta refsys point x/y 172s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 172s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 172s band 1 6 NA NA NA NA 172s > 172s > # does gdal reproduce what stars does? Smaller grid: 172s > x2 = st_warp(x, crs = st_crs(x), use_gdal = FALSE, cellsize = 3) 172s > # x2 = x2[,2:43,2:43] 172s > if (interactive()) { plot(x2, breaks = "equal", axes=TRUE, reset = FALSE) } 172s > if (interactive()) { plot(st_as_sfc(st_bbox(x2)), add = TRUE, col = NA, border = 'red') } 172s > ### doesn't work: FIXME: check with more recent GDAL: 172s > (y = setNames(st_warp(x, x2, use_gdal = TRUE, debug = FALSE, no_data_value=-1), "file.tif")) 172s stars object with 2 dimensions and 1 attribute 172s attribute(s): 172s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 172s file.tif 74 107 123 126.6584 132 255 727 172s dimension(s): 172s from to offset delta refsys point x/y 172s x 1 44 1840902 3 WGS 84 / UTM zone 11N FALSE [x] 172s y 1 44 1144003 -3 WGS 84 / UTM zone 11N FALSE [y] 172s > if (interactive()) { plot(y, breaks = "equal") } 172s > names(x2) = names(y) 172s > # isTRUE(all.equal(x2, y, check.attributes=FALSE)) 172s > m = mean(as.vector(x2[[1]]==y[[1]]), na.rm = TRUE) 172s > u = unique(as.vector(x2[[1]]-y[[1]])) 172s > 172s > g = st_as_stars() 172s > attr(g, "dimensions")$x$offset = 0 172s > g$values = as.vector(t(matrix(seq_len(prod(dim(g))), 180, 360))) 172s > if (interactive()) { plot(g, axes=TRUE) } 172s > a = st_warp(g, st_as_stars(), use_gdal=FALSE) 172s > b = st_warp(g, st_as_stars(), use_gdal=TRUE, no_data_value = -1) 172s > all.equal(a, b, check.attributes = FALSE) 172s [1] TRUE 172s > 172s BEGIN TEST write.R 172s 172s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 172s Copyright (C) 2024 The R Foundation for Statistical Computing 172s Platform: x86_64-pc-linux-gnu 172s 172s R is free software and comes with ABSOLUTELY NO WARRANTY. 172s You are welcome to redistribute it under certain conditions. 172s Type 'license()' or 'licence()' for distribution details. 172s 172s R is a collaborative project with many contributors. 172s Type 'contributors()' for more information and 172s 'citation()' on how to cite R or R packages in publications. 172s 172s Type 'demo()' for some demos, 'help()' for on-line help, or 172s 'help.start()' for an HTML browser interface to help. 172s Type 'q()' to quit R. 172s 173s > suppressPackageStartupMessages(library(stars)) 173s > 173s > tif = system.file("tif/L7_ETMs.tif", package = "stars") 173s > (x = read_stars(tif)) 173s stars object with 3 dimensions and 1 attribute 173s attribute(s): 173s Min. 1st Qu. Median Mean 3rd Qu. Max. 173s L7_ETMs.tif 1 54 69 68.91242 86 255 173s dimension(s): 173s from to offset delta refsys point x/y 173s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 173s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 173s band 1 6 NA NA NA NA 173s > 173s > # write stars object: 173s > write_stars(x, tempfile(), driver = "GTiff") 173s > 173s > # write stars_proxy object: 173s > (x = read_stars(tif, proxy = TRUE)) 173s stars_proxy object with 1 attribute in 1 file(s): 173s $L7_ETMs.tif 173s [1] "[...]/L7_ETMs.tif" 173s 173s dimension(s): 173s from to offset delta refsys point x/y 173s x 1 349 288776 28.5 SIRGAS 2000 / UTM zone 25S FALSE [x] 173s y 1 352 9120761 -28.5 SIRGAS 2000 / UTM zone 25S FALSE [y] 173s band 1 6 NA NA NA NA 173s > write_stars(x, tempfile(), driver = "GTiff") 173s 173s > 174s autopkgtest [18:44:12]: test run-unit-test: -----------------------] 174s autopkgtest [18:44:12]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 174s run-unit-test PASS 174s autopkgtest [18:44:12]: test pkg-r-autopkgtest: preparing testbed 238s autopkgtest [18:45:16]: testbed dpkg architecture: amd64 238s autopkgtest [18:45:16]: testbed apt version: 2.9.18 238s autopkgtest [18:45:16]: @@@@@@@@@@@@@@@@@@@@ test bed setup 238s autopkgtest [18:45:16]: testbed release detected to be: plucky 238s autopkgtest [18:45:16]: updating testbed package index (apt update) 239s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 239s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 239s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 239s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 239s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.4 kB] 239s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [884 kB] 239s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 239s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [95.5 kB] 239s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [125 kB] 239s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [299 kB] 239s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [832 kB] 239s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [7208 B] 239s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [1328 B] 239s Fetched 2446 kB in 0s (8366 kB/s) 240s Reading package lists... 240s + lsb_release --codename --short 240s + RELEASE=plucky 240s + cat 240s + [ plucky != trusty ] 240s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 240s Reading package lists... 240s Building dependency tree... 240s Reading state information... 241s Calculating upgrade... 241s The following packages will be upgraded: 241s initramfs-tools initramfs-tools-bin initramfs-tools-core 241s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 241s Need to get 84.0 kB of archives. 241s After this operation, 9216 B of additional disk space will be used. 241s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools all 0.145ubuntu1 [7942 B] 241s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-core all 0.145ubuntu1 [51.2 kB] 241s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 initramfs-tools-bin amd64 0.145ubuntu1 [24.8 kB] 242s Fetched 84.0 kB in 0s (4510 kB/s) 242s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108876 files and directories currently installed.) 242s Preparing to unpack .../initramfs-tools_0.145ubuntu1_all.deb ... 242s Unpacking initramfs-tools (0.145ubuntu1) over (0.142ubuntu35) ... 242s Preparing to unpack .../initramfs-tools-core_0.145ubuntu1_all.deb ... 242s Unpacking initramfs-tools-core (0.145ubuntu1) over (0.142ubuntu35) ... 242s Preparing to unpack .../initramfs-tools-bin_0.145ubuntu1_amd64.deb ... 242s Unpacking initramfs-tools-bin (0.145ubuntu1) over (0.142ubuntu35) ... 242s Setting up initramfs-tools-bin (0.145ubuntu1) ... 242s Setting up initramfs-tools-core (0.145ubuntu1) ... 242s Setting up initramfs-tools (0.145ubuntu1) ... 242s update-initramfs: deferring update (trigger activated) 242s Processing triggers for man-db (2.13.0-1) ... 243s Processing triggers for initramfs-tools (0.145ubuntu1) ... 243s update-initramfs: Generating /boot/initrd.img-6.12.0-12-generic 243s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 253s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 253s + /usr/lib/apt/apt-helper analyze-pattern ?true 253s + uname -r 253s + sed s/\./\\./g 253s + running_kernel_pattern=^linux-.*6\.12\.0-12-generic.* 253s + apt list ?obsolete 253s + tail -n+2 253s + cut -d/ -f1 253s + grep -v ^linux-.*6\.12\.0-12-generic.* 253s + true 253s + obsolete_pkgs= 253s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove 253s Reading package lists... 253s Building dependency tree... 253s Reading state information... 254s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 254s + grep -q trusty /etc/lsb-release 254s + [ ! -d /usr/share/doc/unattended-upgrades ] 254s + [ ! -d /usr/share/doc/lxd ] 254s + [ ! -d /usr/share/doc/lxd-client ] 254s + [ ! -d /usr/share/doc/snapd ] 254s + type iptables 254s + cat 254s + chmod 755 /etc/rc.local 254s + . /etc/rc.local 254s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 254s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 254s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 254s + uname -m 254s + [ x86_64 = ppc64le ] 254s + [ -d /run/systemd/system ] 254s + systemd-detect-virt --quiet --vm 254s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 254s + cat 254s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 254s + echo COMPRESS=lz4 254s autopkgtest [18:45:32]: upgrading testbed (apt dist-upgrade and autopurge) 254s Reading package lists... 254s Building dependency tree... 254s Reading state information... 255s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 255s Starting 2 pkgProblemResolver with broken count: 0 255s Done 255s Entering ResolveByKeep 256s 256s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 256s Reading package lists... 256s Building dependency tree... 256s Reading state information... 257s Starting pkgProblemResolver with broken count: 0 257s Starting 2 pkgProblemResolver with broken count: 0 257s Done 257s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 257s autopkgtest [18:45:35]: rebooting testbed after setup commands that affected boot 261s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 277s Reading package lists... 277s Building dependency tree... 277s Reading state information... 277s Starting pkgProblemResolver with broken count: 0 278s Starting 2 pkgProblemResolver with broken count: 0 278s Done 278s The following NEW packages will be installed: 278s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 278s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 278s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-14 278s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 278s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins gfortran 278s gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu 278s icu-devtools javascript-common libabsl20230802 libaec0 libaom3 278s libarmadillo14 libarpack2t64 libasan8 libavif16 libblas-dev libblas3 278s libblosc1 libbz2-dev libcairo2 libcc1-0 libcfitsio10t64 libdatrie1 libdav1d7 278s libde265-0 libdeflate-dev libdeflate0 libfontconfig1 libfreexl1 libfyba0t64 278s libgav1-1 libgcc-14-dev libgdal36 libgeos-c1t64 libgeos3.13.0 libgeotiff5 278s libgfortran-14-dev libgfortran5 libgif7 libgomp1 libgpgmepp6t64 278s libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-310 libhdf5-hl-310 278s libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libhwasan0 libice6 278s libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 278s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 278s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 278s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 278s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 278s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 278s libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack-dev liblapack3 278s liblcms2-2 liblerc4 liblsan0 libltdl7 liblua5.4-0 liblzma-dev libminizip1t64 278s libmpc3 libmysqlclient24 libncurses-dev libnetcdf19t64 libodbc2 libodbcinst2 278s libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 278s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 278s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpoppler145 libpq5 278s libproj25 libqhull-r8.0 libquadmath0 librav1e0.7 libreadline-dev librttopo1 278s libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 libstdc++-14-dev 278s libsvtav1enc2 libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev 278s libtk8.6 libtsan2 libubsan1 libudunits2-0 libudunits2-data liburiparser1 278s libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 278s libxss1 libxt6t64 libyuv0 littler mysql-common node-bootstrap-sass 278s node-html5shiv node-normalize.css pandoc pandoc-data pkg-r-autopkgtest 278s pkgconf pkgconf-bin proj-data r-base-core r-base-dev r-cran-abind 278s r-cran-areal r-cran-askpass r-cran-base64enc r-cran-bdsmatrix r-cran-brio 278s r-cran-bslib r-cran-cachem r-cran-cairo r-cran-callr r-cran-class 278s r-cran-classint r-cran-cli r-cran-clue r-cran-cluster r-cran-codetools 278s r-cran-collapse r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11 278s r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir r-cran-desc 278s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-evaluate 278s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fnn r-cran-fontawesome 278s r-cran-formula r-cran-fs r-cran-future r-cran-future.apply r-cran-generics 278s r-cran-ggforce r-cran-ggplot2 r-cran-ggthemes r-cran-globals r-cran-glue 278s r-cran-goftest r-cran-gridextra r-cran-gtable r-cran-highr r-cran-htmltools 278s r-cran-httpuv r-cran-httr r-cran-intervals r-cran-isoband r-cran-jquerylib 278s r-cran-jsonlite r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later 278s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 278s r-cran-littler r-cran-lmtest r-cran-lwgeom r-cran-magrittr r-cran-mapdata 278s r-cran-maps r-cran-mass r-cran-matrix r-cran-maxlik r-cran-memoise 278s r-cran-mgcv r-cran-mime r-cran-misctools r-cran-munsell r-cran-ncdfgeom 278s r-cran-ncmeta r-cran-nlme r-cran-openssl r-cran-parallelly r-cran-pbapply 278s r-cran-pcict r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 278s r-cran-pkgload r-cran-plm r-cran-polyclip r-cran-praise r-cran-processx 278s r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 278s r-cran-randomforest r-cran-rappdirs r-cran-raster r-cran-rbibutils 278s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rdpack r-cran-rex 278s r-cran-rlang r-cran-rmarkdown r-cran-rnetcdf r-cran-rpart r-cran-rprojroot 278s r-cran-s2 r-cran-sandwich r-cran-sass r-cran-scales r-cran-sf r-cran-shiny 278s r-cran-sourcetools r-cran-sp r-cran-spacetime r-cran-spatstat 278s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 278s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 278s r-cran-spatstat.sparse r-cran-spatstat.utils r-cran-stars r-cran-stringi 278s r-cran-stringr r-cran-survival r-cran-sys r-cran-systemfonts r-cran-tensor 278s r-cran-terra r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 278s r-cran-tinytex r-cran-tweenr r-cran-units r-cran-utf8 r-cran-vctrs 278s r-cran-viridis r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk 278s r-cran-xfun r-cran-xtable r-cran-xts r-cran-yaml r-cran-zoo unixodbc-common 278s unzip x11-common xdg-utils zip zlib1g-dev 278s 0 upgraded, 343 newly installed, 0 to remove and 0 not upgraded. 278s Need to get 398 MB of archives. 278s After this operation, 1143 MB of additional disk space will be used. 278s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 278s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 278s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [11.9 MB] 279s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-13ubuntu1 [1032 B] 279s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 279s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 279s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-13ubuntu1 [47.6 kB] 279s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-13ubuntu1 [148 kB] 279s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-13ubuntu1 [29.1 kB] 279s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-13ubuntu1 [2998 kB] 279s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-13ubuntu1 [1317 kB] 279s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-13ubuntu1 [2732 kB] 279s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-13ubuntu1 [1177 kB] 279s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-13ubuntu1 [1634 kB] 279s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-13ubuntu1 [153 kB] 279s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-13ubuntu1 [2815 kB] 279s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [23.4 MB] 279s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-13ubuntu1 [534 kB] 279s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 279s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 279s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-13ubuntu1 [2508 kB] 279s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [13.3 MB] 279s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-13ubuntu1 [21.1 kB] 279s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 279s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 279s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 279s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 279s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 279s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 279s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 279s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 279s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 279s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 279s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 279s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 279s Get:36 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-data all 3.10.1+dfsg-1build2 [269 kB] 279s Get:37 http://ftpmaster.internal/ubuntu plucky/universe amd64 gdal-plugins amd64 3.10.1+dfsg-1build2 [25.6 kB] 279s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-13ubuntu1 [909 kB] 279s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-13ubuntu1 [965 kB] 279s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-13ubuntu1 [12.5 MB] 279s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-13ubuntu1 [13.2 kB] 279s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1022 B] 279s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.1.0-2ubuntu1 [1172 B] 279s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 279s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 11+nmu1 [5936 B] 279s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libabsl20230802 amd64 20230802.1-4ubuntu2 [563 kB] 279s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 279s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libaom3 amd64 3.11.0-1 [2761 kB] 279s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 279s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 279s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarpack2t64 amd64 3.9.1-4 [120 kB] 279s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 libarmadillo14 amd64 1:14.2.1+dfsg-1 [105 kB] 279s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libdav1d7 amd64 1.5.1-1 [743 kB] 279s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgav1-1 amd64 0.19.0-3 [697 kB] 279s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 librav1e0.7 amd64 0.7.1-9 [1025 kB] 279s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2686 kB] 279s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 279s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 279s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libyuv0 amd64 0.0.1899.20250103-1 [352 kB] 279s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 libavif16 amd64 1.1.1-1ubuntu1 [113 kB] 279s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.0-4 [307 kB] 279s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB] 279s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB] 279s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 279s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 279s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 279s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 279s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 279s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 279s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcfitsio10t64 amd64 4.5.0-5 [629 kB] 279s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 279s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libde265-0 amd64 1.0.15-1build4 [168 kB] 279s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 279s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.23-1 [71.7 kB] 279s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfyba0t64 amd64 4.1.1-11build1 [119 kB] 279s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [22.9 kB] 279s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfreexl1 amd64 2.0.0-1build2 [41.7 kB] 279s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos3.13.0 amd64 3.13.0-1 [1017 kB] 279s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeos-c1t64 amd64 3.13.0-1 [103 kB] 279s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 proj-data all 9.5.1-1 [7924 kB] 279s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 279s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 279s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 279s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 279s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 279s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB] 279s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgeotiff5 amd64 1.7.3-1 [63.0 kB] 279s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libgif7 amd64 5.2.2-1ubuntu1 [35.2 kB] 279s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 279s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf4-0-alt amd64 4.3.0-1 [285 kB] 279s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 279s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-aomdec amd64 1.19.5-1build1 [11.6 kB] 279s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-libde265 amd64 1.19.5-1build1 [9074 B] 279s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif1 amd64 1.19.5-1build1 [422 kB] 279s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB] 279s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlbase1t64 amd64 1.3.0-12build1 [49.9 kB] 279s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmldom1t64 amd64 1.3.0-12build1 [156 kB] 279s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 libkmlengine1t64 amd64 1.3.0-12build1 [71.4 kB] 279s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 mysql-common all 5.8+1.1.1 [6800 B] 279s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 libmysqlclient24 amd64 8.4.4-0ubuntu1 [1256 kB] 279s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 279s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnetcdf19t64 amd64 1:4.9.2-6ubuntu2 [531 kB] 279s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 libltdl7 amd64 2.5.4-2.1 [46.1 kB] 279s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbc2 amd64 2.3.12-2ubuntu1 [186 kB] 279s Get:105 http://ftpmaster.internal/ubuntu plucky/main amd64 unixodbc-common all 2.3.12-2ubuntu1 [9044 B] 279s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 libodbcinst2 amd64 2.3.12-2ubuntu1 [34.1 kB] 279s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 libogdi4.1 amd64 4.1.1+ds-5 [219 kB] 279s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu3 [217 kB] 279s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgmepp6t64 amd64 1.24.1-2ubuntu1 [126 kB] 279s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 279s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 libpoppler145 amd64 25.01.0-2 [1280 kB] 279s Get:112 http://ftpmaster.internal/ubuntu plucky/main amd64 libpq5 amd64 17.2-1build2 [153 kB] 279s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 279s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 librttopo1 amd64 1.1.0-3build2 [191 kB] 279s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 libspatialite8t64 amd64 5.1.0-3build1 [1919 kB] 279s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build1 [1028 kB] 279s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 libgdal36 amd64 3.10.1+dfsg-1build2 [10.2 MB] 279s Get:118 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 279s Get:119 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 279s Get:120 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 279s Get:121 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 279s Get:122 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 280s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 280s Get:124 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 280s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 280s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 280s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 280s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 280s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 280s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 280s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 280s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 280s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 280s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 280s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 280s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 280s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 280s Get:138 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 280s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 280s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.0-4 [6486 kB] 280s Get:141 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 280s Get:142 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5-2 [384 kB] 280s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 280s Get:144 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 280s Get:145 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.1-1 [255 kB] 280s Get:146 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [52.6 kB] 280s Get:147 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [29.1 kB] 280s Get:148 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 280s Get:149 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 280s Get:150 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB] 280s Get:151 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu3 [201 kB] 280s Get:152 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu3 [6768 B] 280s Get:153 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.42-4ubuntu3 [747 kB] 280s Get:154 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 280s Get:155 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 280s Get:156 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.44-3 [300 kB] 280s Get:157 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 280s Get:158 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 280s Get:159 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 280s Get:160 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 280s Get:161 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 280s Get:162 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 280s Get:163 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-data all 2.2.28-7build1 [19.4 kB] 280s Get:164 http://ftpmaster.internal/ubuntu plucky/universe amd64 libudunits2-0 amd64 2.2.28-7build1 [54.1 kB] 280s Get:165 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 280s Get:166 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 280s Get:167 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 280s Get:168 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 280s Get:169 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.2-1build1 [28.9 MB] 280s Get:170 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 280s Get:171 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B] 280s Get:172 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 280s Get:173 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 280s Get:174 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 280s Get:175 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 280s Get:176 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 280s Get:177 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.3-1 [189 kB] 280s Get:178 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 280s Get:179 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 280s Get:180 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 280s Get:181 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.2-1build1 [4342 B] 280s Get:182 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 280s Get:183 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 280s Get:184 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.3-1 [1348 kB] 280s Get:185 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 280s Get:186 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 280s Get:187 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB] 280s Get:188 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 280s Get:189 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 280s Get:190 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 280s Get:191 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 280s Get:192 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 280s Get:193 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 280s Get:194 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 280s Get:195 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 280s Get:196 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 280s Get:197 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 280s Get:198 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 280s Get:199 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 280s Get:200 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 280s Get:201 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB] 280s Get:202 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-class amd64 7.3-23-1 [92.7 kB] 280s Get:203 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 280s Get:204 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-e1071 amd64 1.7-16-1 [565 kB] 280s Get:205 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-kernsmooth amd64 2.23-26-1 [94.5 kB] 280s Get:206 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-classint amd64 0.4-11+dfsg-1 [108 kB] 280s Get:207 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 280s Get:208 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 280s Get:209 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 280s Get:210 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-wk amd64 0.9.4-1 [1791 kB] 280s Get:211 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-s2 amd64 1.1.7-1 [2023 kB] 280s Get:212 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-units amd64 0.8-5+dfsg-1 [275 kB] 280s Get:213 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sf amd64 1.0-19+dfsg-1 [3313 kB] 280s Get:214 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-areal all 0.1.8+dfsg-2 [1004 kB] 280s Get:215 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 280s Get:216 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 280s Get:217 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 280s Get:218 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bdsmatrix amd64 1.3-7-1 [299 kB] 280s Get:219 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 280s Get:220 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 280s Get:221 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 280s Get:222 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 280s Get:223 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 280s Get:224 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 280s Get:225 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB] 280s Get:226 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 280s Get:227 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 280s Get:228 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 280s Get:229 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 280s Get:230 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 280s Get:231 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 280s Get:232 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cairo amd64 1.6-2-1 [88.8 kB] 280s Get:233 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.8.1-1 [397 kB] 280s Get:234 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.5-1 [356 kB] 280s Get:235 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 280s Get:236 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cluster amd64 2.1.8-1 [579 kB] 280s Get:237 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-clue amd64 0.3-66-1 [968 kB] 280s Get:238 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 280s Get:239 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-collapse amd64 2.0.19-1 [3476 kB] 280s Get:240 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 280s Get:241 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.2-2 [137 kB] 280s Get:242 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 280s Get:243 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rex all 1.2.1-1 [129 kB] 280s Get:244 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-curl amd64 6.1.0+dfsg-1 [195 kB] 280s Get:245 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-openssl amd64 2.2.0+dfsg-1 [405 kB] 280s Get:246 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 280s Get:247 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 280s Get:248 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 280s Get:249 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 280s Get:250 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cpp11 all 0.5.1-1 [233 kB] 280s Get:251 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 280s Get:252 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 280s Get:253 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 280s Get:254 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 280s Get:255 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 280s Get:256 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fnn amd64 1.1.4.1-1 [126 kB] 280s Get:257 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 280s Get:258 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 280s Get:259 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-globals all 0.16.3-1 [120 kB] 280s Get:260 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 280s Get:261 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-parallelly amd64 1.41.0-1 [507 kB] 280s Get:262 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future all 1.34.0+dfsg-1 [646 kB] 280s Get:263 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 280s Get:264 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 280s Get:265 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 280s Get:266 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 281s Get:267 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 281s Get:268 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-2-1 [4456 kB] 281s Get:269 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 281s Get:270 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 281s Get:271 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 281s Get:272 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 281s Get:273 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 281s Get:274 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 281s Get:275 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 281s Get:276 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tweenr amd64 2.0.3-1 [410 kB] 281s Get:277 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-polyclip amd64 1.10-7-1 [116 kB] 281s Get:278 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-systemfonts amd64 1.2.1-1 [347 kB] 281s Get:279 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 281s Get:280 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggforce amd64 0.4.2-1 [1777 kB] 281s Get:281 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 281s Get:282 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 281s Get:283 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggthemes all 5.1.0-1 [434 kB] 281s Get:284 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-goftest amd64 1.2-3-1 [59.5 kB] 281s Get:285 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 281s Get:286 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.50+dfsg-1 [568 kB] 281s Get:287 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 281s Get:288 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 281s Get:289 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 281s Get:290 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 281s Get:291 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-intervals amd64 0.15.5-1 [602 kB] 281s Get:292 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 281s Get:293 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.49+dfsg-1 [859 kB] 281s Get:294 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-zoo amd64 1.8-12-2 [984 kB] 281s Get:295 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lmtest amd64 0.9.40-1 [396 kB] 281s Get:296 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lwgeom amd64 0.2-14-1 [463 kB] 281s Get:297 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-maps amd64 3.4.2-1 [2359 kB] 281s Get:298 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mapdata amd64 2.3.1-1 [23.5 MB] 281s Get:299 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-misctools all 0.6-28-1 [99.9 kB] 281s Get:300 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sandwich all 3.1-1-1 [1483 kB] 281s Get:301 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-maxlik all 1.5-2.1-1 [1083 kB] 281s Get:302 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rnetcdf amd64 2.9-1-1build2 [233 kB] 281s Get:303 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 281s Get:304 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ncmeta all 0.3.6-1 [360 kB] 281s Get:305 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-stars all 0.6-7-1 [4411 kB] 281s Get:306 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ncdfgeom all 1.1.6+dfsg-1 [4124 kB] 281s Get:307 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pbapply all 1.7-2-1 [102 kB] 281s Get:308 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pcict amd64 0.5-4.4-1 [94.4 kB] 281s Get:309 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 281s Get:310 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 281s Get:311 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 281s Get:312 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rbibutils amd64 2.3-1 [1023 kB] 281s Get:313 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rdpack all 2.6.2-1 [757 kB] 281s Get:314 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plm all 2.6-5-1 [1815 kB] 281s Get:315 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 281s Get:316 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-randomforest amd64 4.7-1.2-1 [216 kB] 281s Get:317 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sp amd64 1:2.1-4+dfsg-1 [1472 kB] 281s Get:318 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-terra amd64 1.8-10-1 [4257 kB] 281s Get:319 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-raster amd64 3.6-31-1 [3176 kB] 281s Get:320 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.54-1 [147 kB] 281s Get:321 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 281s Get:322 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 281s Get:323 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 281s Get:324 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 281s Get:325 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.9.1+dfsg-1 [3111 kB] 281s Get:326 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 281s Get:327 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 281s Get:328 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 281s Get:329 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xts amd64 0.14.1-1 [1198 kB] 281s Get:330 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spacetime all 1.3-2-2 [2775 kB] 281s Get:331 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.utils amd64 3.1-2-1 [383 kB] 281s Get:332 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.data all 3.1-4-1 [4047 kB] 281s Get:333 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.geom amd64 3.2-9-2 [3946 kB] 281s Get:334 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.random amd64 3.2-3-1 [1169 kB] 281s Get:335 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tensor all 1.5-4 [15.7 kB] 281s Get:336 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.sparse amd64 3.1-0-1 [221 kB] 281s Get:337 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.explore amd64 3.2-7-1 [3432 kB] 281s Get:338 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.model amd64 3.2-11-1 [3385 kB] 281s Get:339 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat.linnet amd64 3.1-5-1 [1468 kB] 281s Get:340 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-spatstat amd64 3.0-8-1 [3881 kB] 281s Get:341 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.6.1-1 [150 kB] 281s Get:342 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 281s Get:343 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 282s Preconfiguring packages ... 282s Fetched 398 MB in 3s (126 MB/s) 282s Selecting previously unselected package libisl23:amd64. 283s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108876 files and directories currently installed.) 283s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 283s Unpacking libisl23:amd64 (0.27-1) ... 283s Selecting previously unselected package libmpc3:amd64. 283s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 283s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 283s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 283s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 283s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 283s Selecting previously unselected package cpp-14. 283s Preparing to unpack .../003-cpp-14_14.2.0-13ubuntu1_amd64.deb ... 283s Unpacking cpp-14 (14.2.0-13ubuntu1) ... 283s Selecting previously unselected package cpp-x86-64-linux-gnu. 283s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 283s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 283s Selecting previously unselected package cpp. 283s Preparing to unpack .../005-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 283s Unpacking cpp (4:14.1.0-2ubuntu1) ... 283s Selecting previously unselected package libcc1-0:amd64. 283s Preparing to unpack .../006-libcc1-0_14.2.0-13ubuntu1_amd64.deb ... 283s Unpacking libcc1-0:amd64 (14.2.0-13ubuntu1) ... 283s Selecting previously unselected package libgomp1:amd64. 283s Preparing to unpack .../007-libgomp1_14.2.0-13ubuntu1_amd64.deb ... 283s Unpacking libgomp1:amd64 (14.2.0-13ubuntu1) ... 283s Selecting previously unselected package libitm1:amd64. 283s Preparing to unpack .../008-libitm1_14.2.0-13ubuntu1_amd64.deb ... 283s Unpacking libitm1:amd64 (14.2.0-13ubuntu1) ... 283s Selecting previously unselected package libasan8:amd64. 283s Preparing to unpack .../009-libasan8_14.2.0-13ubuntu1_amd64.deb ... 283s Unpacking libasan8:amd64 (14.2.0-13ubuntu1) ... 283s Selecting previously unselected package liblsan0:amd64. 283s Preparing to unpack .../010-liblsan0_14.2.0-13ubuntu1_amd64.deb ... 283s Unpacking liblsan0:amd64 (14.2.0-13ubuntu1) ... 283s Selecting previously unselected package libtsan2:amd64. 283s Preparing to unpack .../011-libtsan2_14.2.0-13ubuntu1_amd64.deb ... 283s Unpacking libtsan2:amd64 (14.2.0-13ubuntu1) ... 283s Selecting previously unselected package libubsan1:amd64. 283s Preparing to unpack .../012-libubsan1_14.2.0-13ubuntu1_amd64.deb ... 283s Unpacking libubsan1:amd64 (14.2.0-13ubuntu1) ... 283s Selecting previously unselected package libhwasan0:amd64. 283s Preparing to unpack .../013-libhwasan0_14.2.0-13ubuntu1_amd64.deb ... 283s Unpacking libhwasan0:amd64 (14.2.0-13ubuntu1) ... 283s Selecting previously unselected package libquadmath0:amd64. 283s Preparing to unpack .../014-libquadmath0_14.2.0-13ubuntu1_amd64.deb ... 283s Unpacking libquadmath0:amd64 (14.2.0-13ubuntu1) ... 283s Selecting previously unselected package libgcc-14-dev:amd64. 284s Preparing to unpack .../015-libgcc-14-dev_14.2.0-13ubuntu1_amd64.deb ... 284s Unpacking libgcc-14-dev:amd64 (14.2.0-13ubuntu1) ... 284s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 284s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 284s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 284s Selecting previously unselected package gcc-14. 284s Preparing to unpack .../017-gcc-14_14.2.0-13ubuntu1_amd64.deb ... 284s Unpacking gcc-14 (14.2.0-13ubuntu1) ... 284s Selecting previously unselected package gcc-x86-64-linux-gnu. 284s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 284s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 284s Selecting previously unselected package gcc. 284s Preparing to unpack .../019-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 284s Unpacking gcc (4:14.1.0-2ubuntu1) ... 284s Selecting previously unselected package libstdc++-14-dev:amd64. 284s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-13ubuntu1_amd64.deb ... 284s Unpacking libstdc++-14-dev:amd64 (14.2.0-13ubuntu1) ... 284s Selecting previously unselected package g++-14-x86-64-linux-gnu. 284s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 284s Unpacking g++-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 285s Selecting previously unselected package g++-14. 285s Preparing to unpack .../022-g++-14_14.2.0-13ubuntu1_amd64.deb ... 285s Unpacking g++-14 (14.2.0-13ubuntu1) ... 285s Selecting previously unselected package g++-x86-64-linux-gnu. 285s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 285s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 285s Selecting previously unselected package g++. 285s Preparing to unpack .../024-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 285s Unpacking g++ (4:14.1.0-2ubuntu1) ... 285s Selecting previously unselected package build-essential. 285s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 285s Unpacking build-essential (12.10ubuntu1) ... 285s Selecting previously unselected package dctrl-tools. 285s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 285s Unpacking dctrl-tools (2.24-3build3) ... 285s Selecting previously unselected package fonts-dejavu-mono. 285s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 285s Unpacking fonts-dejavu-mono (2.37-8) ... 285s Selecting previously unselected package fonts-dejavu-core. 285s Preparing to unpack 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unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 285s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 285s Selecting previously unselected package fonts-mathjax. 285s Preparing to unpack .../034-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 285s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 285s Selecting previously unselected package gdal-data. 285s Preparing to unpack .../035-gdal-data_3.10.1+dfsg-1build2_all.deb ... 285s Unpacking gdal-data (3.10.1+dfsg-1build2) ... 286s Selecting previously unselected package gdal-plugins:amd64. 286s Preparing to unpack .../036-gdal-plugins_3.10.1+dfsg-1build2_amd64.deb ... 286s Unpacking gdal-plugins:amd64 (3.10.1+dfsg-1build2) ... 286s Selecting previously unselected package libgfortran5:amd64. 286s Preparing to unpack .../037-libgfortran5_14.2.0-13ubuntu1_amd64.deb ... 286s Unpacking libgfortran5:amd64 (14.2.0-13ubuntu1) ... 286s Selecting previously unselected package libgfortran-14-dev:amd64. 286s Preparing to unpack .../038-libgfortran-14-dev_14.2.0-13ubuntu1_amd64.deb ... 286s Unpacking libgfortran-14-dev:amd64 (14.2.0-13ubuntu1) ... 286s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 286s Preparing to unpack .../039-gfortran-14-x86-64-linux-gnu_14.2.0-13ubuntu1_amd64.deb ... 286s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-13ubuntu1) ... 286s Selecting previously unselected package gfortran-14. 286s Preparing to unpack .../040-gfortran-14_14.2.0-13ubuntu1_amd64.deb ... 286s Unpacking gfortran-14 (14.2.0-13ubuntu1) ... 286s Selecting previously unselected package gfortran-x86-64-linux-gnu. 286s Preparing to unpack .../041-gfortran-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 286s Unpacking gfortran-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 286s Selecting previously unselected package gfortran. 286s Preparing to unpack .../042-gfortran_4%3a14.1.0-2ubuntu1_amd64.deb ... 286s Unpacking gfortran (4:14.1.0-2ubuntu1) ... 286s Selecting previously unselected package icu-devtools. 286s Preparing to unpack .../043-icu-devtools_76.1-1ubuntu2_amd64.deb ... 286s Unpacking icu-devtools (76.1-1ubuntu2) ... 286s Selecting previously unselected package javascript-common. 286s Preparing to unpack .../044-javascript-common_11+nmu1_all.deb ... 286s Unpacking javascript-common (11+nmu1) ... 286s Selecting previously unselected package libabsl20230802:amd64. 286s Preparing to unpack .../045-libabsl20230802_20230802.1-4ubuntu2_amd64.deb ... 286s Unpacking libabsl20230802:amd64 (20230802.1-4ubuntu2) ... 286s Selecting previously unselected package libaec0:amd64. 286s Preparing to unpack .../046-libaec0_1.1.3-1_amd64.deb ... 286s Unpacking libaec0:amd64 (1.1.3-1) ... 286s Selecting previously unselected package libaom3:amd64. 286s Preparing to unpack .../047-libaom3_3.11.0-1_amd64.deb ... 286s Unpacking libaom3:amd64 (3.11.0-1) ... 286s Selecting previously unselected package libblas3:amd64. 286s Preparing to unpack .../048-libblas3_3.12.0-4_amd64.deb ... 286s Unpacking libblas3:amd64 (3.12.0-4) ... 286s Selecting previously unselected package liblapack3:amd64. 286s Preparing to unpack .../049-liblapack3_3.12.0-4_amd64.deb ... 286s Unpacking liblapack3:amd64 (3.12.0-4) ... 286s Selecting previously unselected package libarpack2t64:amd64. 286s Preparing to unpack .../050-libarpack2t64_3.9.1-4_amd64.deb ... 286s Unpacking libarpack2t64:amd64 (3.9.1-4) ... 286s Selecting previously unselected package libarmadillo14. 286s Preparing to unpack .../051-libarmadillo14_1%3a14.2.1+dfsg-1_amd64.deb ... 286s Unpacking libarmadillo14 (1:14.2.1+dfsg-1) ... 286s Selecting previously unselected package libdav1d7:amd64. 287s Preparing to unpack .../052-libdav1d7_1.5.1-1_amd64.deb ... 287s Unpacking libdav1d7:amd64 (1.5.1-1) ... 287s Selecting previously unselected package libgav1-1:amd64. 287s Preparing to unpack .../053-libgav1-1_0.19.0-3_amd64.deb ... 287s Unpacking libgav1-1:amd64 (0.19.0-3) ... 287s Selecting previously unselected package librav1e0.7:amd64. 287s Preparing to unpack .../054-librav1e0.7_0.7.1-9_amd64.deb ... 287s Unpacking librav1e0.7:amd64 (0.7.1-9) ... 287s Selecting previously unselected package libsvtav1enc2:amd64. 287s Preparing to unpack .../055-libsvtav1enc2_2.3.0+dfsg-1_amd64.deb ... 287s Unpacking libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... 287s Selecting previously unselected package libjpeg-turbo8:amd64. 287s Preparing to unpack .../056-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 287s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 287s Selecting previously unselected package libjpeg8:amd64. 287s Preparing to unpack .../057-libjpeg8_8c-2ubuntu11_amd64.deb ... 287s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 287s Selecting previously unselected package libyuv0:amd64. 287s Preparing to unpack .../058-libyuv0_0.0.1899.20250103-1_amd64.deb ... 287s Unpacking libyuv0:amd64 (0.0.1899.20250103-1) ... 287s Selecting previously unselected package libavif16:amd64. 287s Preparing to unpack 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(0.44.0-3) ... 287s Selecting previously unselected package libxcb-render0:amd64. 287s Preparing to unpack .../065-libxcb-render0_1.17.0-2_amd64.deb ... 287s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 287s Selecting previously unselected package libxcb-shm0:amd64. 287s Preparing to unpack .../066-libxcb-shm0_1.17.0-2_amd64.deb ... 287s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 287s Selecting previously unselected package libxrender1:amd64. 287s Preparing to unpack .../067-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 287s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 287s Selecting previously unselected package libcairo2:amd64. 287s Preparing to unpack .../068-libcairo2_1.18.2-2_amd64.deb ... 287s Unpacking libcairo2:amd64 (1.18.2-2) ... 287s Selecting previously unselected package libcfitsio10t64:amd64. 287s Preparing to unpack .../069-libcfitsio10t64_4.5.0-5_amd64.deb ... 287s Unpacking libcfitsio10t64:amd64 (4.5.0-5) ... 287s Selecting previously unselected package libdatrie1:amd64. 287s Preparing to unpack .../070-libdatrie1_0.2.13-3build1_amd64.deb ... 287s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 287s Selecting previously unselected package libde265-0:amd64. 287s Preparing to unpack .../071-libde265-0_1.0.15-1build4_amd64.deb ... 287s Unpacking libde265-0:amd64 (1.0.15-1build4) ... 287s Selecting previously unselected package libdeflate0:amd64. 287s Preparing to unpack .../072-libdeflate0_1.23-1_amd64.deb ... 287s Unpacking libdeflate0:amd64 (1.23-1) ... 287s Selecting previously unselected package libdeflate-dev:amd64. 287s Preparing to unpack .../073-libdeflate-dev_1.23-1_amd64.deb ... 287s Unpacking libdeflate-dev:amd64 (1.23-1) ... 287s Selecting previously unselected package libfyba0t64:amd64. 287s Preparing to unpack .../074-libfyba0t64_4.1.1-11build1_amd64.deb ... 287s Unpacking libfyba0t64:amd64 (4.1.1-11build1) ... 287s Selecting previously unselected package libminizip1t64:amd64. 287s Preparing to unpack .../075-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 287s Unpacking libminizip1t64:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 287s Selecting previously unselected package libfreexl1:amd64. 287s Preparing to unpack .../076-libfreexl1_2.0.0-1build2_amd64.deb ... 287s Unpacking libfreexl1:amd64 (2.0.0-1build2) ... 287s Selecting previously unselected package libgeos3.13.0:amd64. 287s Preparing to unpack .../077-libgeos3.13.0_3.13.0-1_amd64.deb ... 287s Unpacking libgeos3.13.0:amd64 (3.13.0-1) ... 288s Selecting previously unselected package libgeos-c1t64:amd64. 288s Preparing to unpack .../078-libgeos-c1t64_3.13.0-1_amd64.deb ... 288s Unpacking libgeos-c1t64:amd64 (3.13.0-1) ... 288s Selecting previously unselected package proj-data. 288s Preparing to unpack .../079-proj-data_9.5.1-1_all.deb ... 288s Unpacking proj-data (9.5.1-1) ... 288s Selecting previously unselected package libjbig0:amd64. 288s Preparing to unpack .../080-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 288s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 288s Selecting previously unselected package liblerc4:amd64. 288s Preparing to unpack .../081-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 288s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 288s Selecting previously unselected package libsharpyuv0:amd64. 288s Preparing to unpack .../082-libsharpyuv0_1.5.0-0.1_amd64.deb ... 288s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 288s Selecting previously unselected package libwebp7:amd64. 288s Preparing to unpack .../083-libwebp7_1.5.0-0.1_amd64.deb ... 288s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 288s Selecting previously unselected package libtiff6:amd64. 288s Preparing to unpack .../084-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 288s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 288s Selecting previously unselected package libproj25:amd64. 288s Preparing to unpack .../085-libproj25_9.5.1-1_amd64.deb ... 288s Unpacking libproj25:amd64 (9.5.1-1) ... 288s Selecting previously unselected package libgeotiff5:amd64. 288s Preparing to unpack .../086-libgeotiff5_1.7.3-1_amd64.deb ... 288s Unpacking libgeotiff5:amd64 (1.7.3-1) ... 288s Selecting previously unselected package libgif7:amd64. 288s Preparing to unpack .../087-libgif7_5.2.2-1ubuntu1_amd64.deb ... 288s Unpacking libgif7:amd64 (5.2.2-1ubuntu1) ... 288s Selecting previously unselected package libsz2:amd64. 288s Preparing to unpack .../088-libsz2_1.1.3-1_amd64.deb ... 288s Unpacking libsz2:amd64 (1.1.3-1) ... 288s Selecting previously unselected package libhdf4-0-alt:amd64. 288s Preparing to unpack .../089-libhdf4-0-alt_4.3.0-1_amd64.deb ... 288s Unpacking libhdf4-0-alt:amd64 (4.3.0-1) ... 288s Selecting previously unselected package libhdf5-310:amd64. 288s Preparing to unpack .../090-libhdf5-310_1.14.5+repack-3_amd64.deb ... 288s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 288s Selecting previously unselected package libheif-plugin-aomdec:amd64. 288s Preparing to unpack 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Preparing to unpack .../096-libkmldom1t64_1.3.0-12build1_amd64.deb ... 288s Unpacking libkmldom1t64:amd64 (1.3.0-12build1) ... 288s Selecting previously unselected package libkmlengine1t64:amd64. 288s Preparing to unpack .../097-libkmlengine1t64_1.3.0-12build1_amd64.deb ... 288s Unpacking libkmlengine1t64:amd64 (1.3.0-12build1) ... 288s Selecting previously unselected package mysql-common. 288s Preparing to unpack .../098-mysql-common_5.8+1.1.1_all.deb ... 288s Unpacking mysql-common (5.8+1.1.1) ... 288s Selecting previously unselected package libmysqlclient24:amd64. 288s Preparing to unpack .../099-libmysqlclient24_8.4.4-0ubuntu1_amd64.deb ... 288s Unpacking libmysqlclient24:amd64 (8.4.4-0ubuntu1) ... 288s Selecting previously unselected package libhdf5-hl-310:amd64. 288s Preparing to unpack .../100-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ... 288s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 288s Selecting previously unselected package libnetcdf19t64:amd64. 288s Preparing to unpack .../101-libnetcdf19t64_1%3a4.9.2-6ubuntu2_amd64.deb ... 288s Unpacking libnetcdf19t64:amd64 (1:4.9.2-6ubuntu2) ... 289s Selecting previously unselected package libltdl7:amd64. 289s Preparing to unpack .../102-libltdl7_2.5.4-2.1_amd64.deb ... 289s Unpacking libltdl7:amd64 (2.5.4-2.1) ... 289s Selecting previously unselected package libodbc2:amd64. 289s Preparing to unpack .../103-libodbc2_2.3.12-2ubuntu1_amd64.deb ... 289s Unpacking libodbc2:amd64 (2.3.12-2ubuntu1) ... 289s Selecting previously unselected package unixodbc-common. 289s Preparing to unpack .../104-unixodbc-common_2.3.12-2ubuntu1_all.deb ... 289s Unpacking unixodbc-common (2.3.12-2ubuntu1) ... 289s Selecting previously unselected package libodbcinst2:amd64. 289s Preparing to unpack .../105-libodbcinst2_2.3.12-2ubuntu1_amd64.deb ... 289s Unpacking libodbcinst2:amd64 (2.3.12-2ubuntu1) ... 289s Selecting previously unselected package libogdi4.1:amd64. 289s Preparing to unpack .../106-libogdi4.1_4.1.1+ds-5_amd64.deb ... 289s Unpacking libogdi4.1:amd64 (4.1.1+ds-5) ... 289s Selecting previously unselected package libopenjp2-7:amd64. 289s Preparing to unpack .../107-libopenjp2-7_2.5.0-2ubuntu3_amd64.deb ... 289s Unpacking libopenjp2-7:amd64 (2.5.0-2ubuntu3) ... 289s Selecting previously unselected package libgpgmepp6t64:amd64. 289s Preparing to unpack .../108-libgpgmepp6t64_1.24.1-2ubuntu1_amd64.deb ... 289s Unpacking libgpgmepp6t64:amd64 (1.24.1-2ubuntu1) ... 289s Selecting previously unselected package liblcms2-2:amd64. 289s Preparing to unpack .../109-liblcms2-2_2.16-2_amd64.deb ... 289s Unpacking liblcms2-2:amd64 (2.16-2) ... 289s Selecting previously unselected package libpoppler145:amd64. 289s Preparing to unpack .../110-libpoppler145_25.01.0-2_amd64.deb ... 289s Unpacking libpoppler145:amd64 (25.01.0-2) ... 289s Selecting previously unselected package libpq5:amd64. 289s Preparing to unpack .../111-libpq5_17.2-1build2_amd64.deb ... 289s Unpacking libpq5:amd64 (17.2-1build2) ... 289s Selecting previously unselected package libqhull-r8.0:amd64. 289s Preparing to unpack .../112-libqhull-r8.0_2020.2-6build1_amd64.deb ... 289s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 289s Selecting previously unselected package librttopo1:amd64. 289s Preparing to unpack .../113-librttopo1_1.1.0-3build2_amd64.deb ... 289s Unpacking librttopo1:amd64 (1.1.0-3build2) ... 289s Selecting previously unselected package libspatialite8t64:amd64. 289s Preparing to unpack .../114-libspatialite8t64_5.1.0-3build1_amd64.deb ... 289s Unpacking libspatialite8t64:amd64 (5.1.0-3build1) ... 289s Selecting previously unselected package libxerces-c3.2t64:amd64. 289s Preparing to unpack .../115-libxerces-c3.2t64_3.2.4+debian-1.3build1_amd64.deb ... 289s Unpacking libxerces-c3.2t64:amd64 (3.2.4+debian-1.3build1) ... 289s Selecting previously unselected package libgdal36:amd64. 289s Preparing to unpack .../116-libgdal36_3.10.1+dfsg-1build2_amd64.deb ... 289s Unpacking libgdal36:amd64 (3.10.1+dfsg-1build2) ... 289s Selecting previously unselected package libgraphite2-3:amd64. 289s Preparing to unpack .../117-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 289s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 289s Selecting previously unselected package libharfbuzz0b:amd64. 289s Preparing to unpack .../118-libharfbuzz0b_10.2.0-1_amd64.deb ... 289s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 289s Selecting previously unselected package x11-common. 289s Preparing to unpack .../119-x11-common_1%3a7.7+23ubuntu3_all.deb ... 289s Unpacking x11-common (1:7.7+23ubuntu3) ... 289s Selecting previously unselected package libice6:amd64. 289s Preparing to unpack .../120-libice6_2%3a1.1.1-1_amd64.deb ... 289s Unpacking libice6:amd64 (2:1.1.1-1) ... 289s Selecting previously unselected package libicu-dev:amd64. 289s Preparing to unpack .../121-libicu-dev_76.1-1ubuntu2_amd64.deb ... 289s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 290s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 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libjs-json (0~20221030+~1.0.8-1) ... 290s Selecting previously unselected package libjs-prettify. 290s Preparing to unpack .../138-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 290s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 290s Selecting previously unselected package liblapack-dev:amd64. 290s Preparing to unpack .../139-liblapack-dev_3.12.0-4_amd64.deb ... 290s Unpacking liblapack-dev:amd64 (3.12.0-4) ... 291s Selecting previously unselected package liblua5.4-0:amd64. 291s Preparing to unpack .../140-liblua5.4-0_5.4.7-1_amd64.deb ... 291s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 291s Selecting previously unselected package libncurses-dev:amd64. 291s Preparing to unpack .../141-libncurses-dev_6.5-2_amd64.deb ... 291s Unpacking libncurses-dev:amd64 (6.5-2) ... 291s Selecting previously unselected package libthai-data. 291s Preparing to unpack .../142-libthai-data_0.1.29-2build1_all.deb ... 291s Unpacking libthai-data (0.1.29-2build1) ... 291s Selecting previously unselected package libthai0:amd64. 291s Preparing to unpack .../143-libthai0_0.1.29-2build1_amd64.deb ... 291s Unpacking libthai0:amd64 (0.1.29-2build1) ... 291s Selecting previously unselected package libpango-1.0-0:amd64. 291s Preparing to unpack .../144-libpango-1.0-0_1.56.1-1_amd64.deb ... 291s Unpacking libpango-1.0-0:amd64 (1.56.1-1) ... 291s Selecting previously unselected package libpangoft2-1.0-0:amd64. 291s Preparing to unpack .../145-libpangoft2-1.0-0_1.56.1-1_amd64.deb ... 291s Unpacking libpangoft2-1.0-0:amd64 (1.56.1-1) ... 291s Selecting previously unselected package libpangocairo-1.0-0:amd64. 291s Preparing to unpack .../146-libpangocairo-1.0-0_1.56.1-1_amd64.deb ... 291s Unpacking libpangocairo-1.0-0:amd64 (1.56.1-1) ... 291s Selecting previously unselected package libpaper2:amd64. 291s Preparing to unpack .../147-libpaper2_2.2.5-0.3_amd64.deb ... 291s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 291s Selecting previously unselected package libpaper-utils. 291s Preparing to unpack .../148-libpaper-utils_2.2.5-0.3_amd64.deb ... 291s Unpacking libpaper-utils (2.2.5-0.3) ... 291s Selecting previously unselected package libpcre2-16-0:amd64. 291s Preparing to unpack .../149-libpcre2-16-0_10.42-4ubuntu3_amd64.deb ... 291s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu3) ... 291s Selecting previously unselected package libpcre2-32-0:amd64. 291s Preparing to unpack .../150-libpcre2-32-0_10.42-4ubuntu3_amd64.deb ... 291s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu3) ... 291s Selecting previously unselected package libpcre2-posix3:amd64. 291s Preparing to unpack .../151-libpcre2-posix3_10.42-4ubuntu3_amd64.deb ... 291s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu3) ... 291s Selecting previously unselected package libpcre2-dev:amd64. 291s Preparing to unpack .../152-libpcre2-dev_10.42-4ubuntu3_amd64.deb ... 291s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu3) ... 291s Selecting previously unselected package libpkgconf3:amd64. 291s Preparing to unpack .../153-libpkgconf3_1.8.1-4_amd64.deb ... 291s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 291s Selecting previously unselected package zlib1g-dev:amd64. 291s Preparing to unpack .../154-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 291s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 291s Selecting previously unselected package libpng-dev:amd64. 291s Preparing to unpack .../155-libpng-dev_1.6.44-3_amd64.deb ... 291s Unpacking libpng-dev:amd64 (1.6.44-3) ... 291s Selecting previously unselected package libreadline-dev:amd64. 291s Preparing to unpack .../156-libreadline-dev_8.2-6_amd64.deb ... 291s Unpacking libreadline-dev:amd64 (8.2-6) ... 291s Selecting previously unselected package libsm6:amd64. 291s Preparing to unpack .../157-libsm6_2%3a1.2.4-1_amd64.deb ... 291s Unpacking libsm6:amd64 (2:1.2.4-1) ... 291s Selecting previously unselected package libtcl8.6:amd64. 291s Preparing to unpack .../158-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 291s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 291s Selecting previously unselected package libxft2:amd64. 291s Preparing to unpack .../159-libxft2_2.3.6-1build1_amd64.deb ... 291s Unpacking libxft2:amd64 (2.3.6-1build1) ... 292s Selecting previously unselected package libxss1:amd64. 292s Preparing to unpack .../160-libxss1_1%3a1.2.3-1build3_amd64.deb ... 292s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 292s Selecting previously unselected package libtk8.6:amd64. 292s Preparing to unpack .../161-libtk8.6_8.6.16-1_amd64.deb ... 292s Unpacking libtk8.6:amd64 (8.6.16-1) ... 292s Selecting previously unselected package libudunits2-data. 292s Preparing to unpack .../162-libudunits2-data_2.2.28-7build1_all.deb ... 292s Unpacking libudunits2-data (2.2.28-7build1) ... 292s Selecting previously unselected package libudunits2-0. 292s Preparing to unpack .../163-libudunits2-0_2.2.28-7build1_amd64.deb ... 292s Unpacking libudunits2-0 (2.2.28-7build1) ... 292s Selecting previously unselected package libxt6t64:amd64. 292s Preparing to unpack .../164-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 292s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 292s Selecting previously unselected package zip. 292s Preparing to unpack .../165-zip_3.0-14ubuntu2_amd64.deb ... 292s Unpacking zip (3.0-14ubuntu2) ... 292s Selecting previously unselected package unzip. 292s Preparing to unpack .../166-unzip_6.0-28ubuntu6_amd64.deb ... 292s Unpacking unzip (6.0-28ubuntu6) ... 292s Selecting previously unselected package xdg-utils. 292s Preparing to unpack .../167-xdg-utils_1.2.1-0ubuntu1_all.deb ... 292s Unpacking xdg-utils (1.2.1-0ubuntu1) ... 292s Selecting previously unselected package r-base-core. 292s Preparing to unpack .../168-r-base-core_4.4.2-1build1_amd64.deb ... 292s Unpacking r-base-core (4.4.2-1build1) ... 292s Selecting previously unselected package r-cran-littler. 292s Preparing to unpack .../169-r-cran-littler_0.3.20-2_amd64.deb ... 292s Unpacking r-cran-littler (0.3.20-2) ... 292s 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.../175-pandoc_3.1.11.1+ds-2_amd64.deb ... 293s Unpacking pandoc (3.1.11.1+ds-2) ... 293s Selecting previously unselected package liblzma-dev:amd64. 293s Preparing to unpack .../176-liblzma-dev_5.6.3-1_amd64.deb ... 293s Unpacking liblzma-dev:amd64 (5.6.3-1) ... 293s Selecting previously unselected package pkgconf-bin. 293s Preparing to unpack .../177-pkgconf-bin_1.8.1-4_amd64.deb ... 293s Unpacking pkgconf-bin (1.8.1-4) ... 293s Selecting previously unselected package pkgconf:amd64. 293s Preparing to unpack .../178-pkgconf_1.8.1-4_amd64.deb ... 293s Unpacking pkgconf:amd64 (1.8.1-4) ... 294s Selecting previously unselected package libtirpc-dev:amd64. 294s Preparing to unpack .../179-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 294s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 294s Selecting previously unselected package r-base-dev. 294s Preparing to unpack .../180-r-base-dev_4.4.2-1build1_all.deb ... 294s Unpacking r-base-dev (4.4.2-1build1) ... 294s Selecting previously unselected package pkg-r-autopkgtest. 294s Preparing to unpack .../181-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 294s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 294s Selecting previously unselected package r-cran-abind. 294s Preparing to unpack .../182-r-cran-abind_1.4-8-1_all.deb ... 294s Unpacking r-cran-abind (1.4-8-1) ... 294s Selecting previously unselected package r-cran-cli. 294s Preparing to unpack .../183-r-cran-cli_3.6.3-1_amd64.deb ... 294s Unpacking r-cran-cli (3.6.3-1) ... 294s Selecting previously unselected package r-cran-generics. 294s Preparing to unpack .../184-r-cran-generics_0.1.3-1_all.deb ... 294s Unpacking r-cran-generics (0.1.3-1) ... 294s Selecting previously unselected package r-cran-glue. 294s Preparing to unpack .../185-r-cran-glue_1.8.0-1_amd64.deb ... 294s Unpacking r-cran-glue (1.8.0-1) ... 294s Selecting previously unselected package r-cran-rlang. 294s Preparing to unpack .../186-r-cran-rlang_1.1.5-1_amd64.deb ... 294s Unpacking r-cran-rlang (1.1.5-1) ... 294s Selecting previously unselected package r-cran-lifecycle. 294s Preparing to unpack .../187-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 294s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 294s Selecting previously unselected package r-cran-magrittr. 294s Preparing to unpack .../188-r-cran-magrittr_2.0.3-1_amd64.deb ... 294s Unpacking r-cran-magrittr (2.0.3-1) ... 294s Selecting previously unselected package r-cran-utf8. 294s Preparing to unpack .../189-r-cran-utf8_1.2.4-1_amd64.deb ... 294s Unpacking r-cran-utf8 (1.2.4-1) ... 294s Selecting previously unselected package r-cran-vctrs. 294s Preparing to unpack .../190-r-cran-vctrs_0.6.5-1_amd64.deb ... 294s Unpacking r-cran-vctrs (0.6.5-1) ... 294s Selecting previously unselected package r-cran-pillar. 294s Preparing to unpack .../191-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 294s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 294s Selecting previously unselected package r-cran-r6. 294s Preparing to unpack .../192-r-cran-r6_2.5.1-1_all.deb ... 294s Unpacking r-cran-r6 (2.5.1-1) ... 294s Selecting previously unselected package r-cran-fansi. 294s Preparing to unpack .../193-r-cran-fansi_1.0.5-1_amd64.deb ... 294s Unpacking r-cran-fansi (1.0.5-1) ... 294s Selecting previously unselected package r-cran-pkgconfig. 294s Preparing to unpack .../194-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 294s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 294s Selecting previously unselected package r-cran-tibble. 294s Preparing to unpack .../195-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 294s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 294s Selecting previously unselected package r-cran-withr. 294s Preparing to unpack .../196-r-cran-withr_3.0.2+dfsg-1_all.deb ... 294s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 294s Selecting previously unselected package r-cran-tidyselect. 294s Preparing to unpack .../197-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 294s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 294s Selecting previously unselected package r-cran-dplyr. 294s Preparing to unpack .../198-r-cran-dplyr_1.1.4-4_amd64.deb ... 294s Unpacking r-cran-dplyr (1.1.4-4) ... 295s Selecting previously unselected package r-cran-purrr. 295s Preparing to unpack .../199-r-cran-purrr_1.0.2-1_amd64.deb ... 295s Unpacking r-cran-purrr (1.0.2-1) ... 295s Selecting previously unselected package r-cran-mass. 295s Preparing to unpack .../200-r-cran-mass_7.3-64-1_amd64.deb ... 295s Unpacking r-cran-mass (7.3-64-1) ... 295s Selecting previously unselected package r-cran-class. 295s Preparing to unpack .../201-r-cran-class_7.3-23-1_amd64.deb ... 295s Unpacking r-cran-class (7.3-23-1) ... 295s Selecting previously unselected package r-cran-proxy. 295s Preparing to unpack .../202-r-cran-proxy_0.4-27-1_amd64.deb ... 295s Unpacking r-cran-proxy (0.4-27-1) ... 295s Selecting previously unselected package r-cran-e1071. 295s Preparing to unpack .../203-r-cran-e1071_1.7-16-1_amd64.deb ... 295s Unpacking r-cran-e1071 (1.7-16-1) ... 295s Selecting previously unselected package r-cran-kernsmooth. 295s Preparing to unpack .../204-r-cran-kernsmooth_2.23-26-1_amd64.deb ... 295s Unpacking r-cran-kernsmooth (2.23-26-1) ... 295s Selecting previously unselected package r-cran-classint. 295s Preparing to unpack .../205-r-cran-classint_0.4-11+dfsg-1_amd64.deb ... 295s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 295s Selecting previously unselected package r-cran-dbi. 295s Preparing to unpack .../206-r-cran-dbi_1.2.3-1_all.deb ... 295s Unpacking r-cran-dbi (1.2.3-1) ... 295s Selecting previously unselected package r-cran-pkgkitten. 295s Preparing to unpack .../207-r-cran-pkgkitten_0.2.4-1_all.deb ... 295s Unpacking r-cran-pkgkitten (0.2.4-1) ... 295s Selecting previously unselected package r-cran-rcpp. 295s Preparing to unpack .../208-r-cran-rcpp_1.0.14-1_amd64.deb ... 295s Unpacking r-cran-rcpp (1.0.14-1) ... 295s Selecting previously unselected package r-cran-wk. 295s Preparing to unpack .../209-r-cran-wk_0.9.4-1_amd64.deb ... 295s Unpacking r-cran-wk (0.9.4-1) ... 295s Selecting previously unselected package r-cran-s2. 295s Preparing to unpack .../210-r-cran-s2_1.1.7-1_amd64.deb ... 295s Unpacking r-cran-s2 (1.1.7-1) ... 295s Selecting previously unselected package r-cran-units. 295s Preparing to unpack .../211-r-cran-units_0.8-5+dfsg-1_amd64.deb ... 295s Unpacking r-cran-units (0.8-5+dfsg-1) ... 295s Selecting previously unselected package r-cran-sf. 295s Preparing to unpack .../212-r-cran-sf_1.0-19+dfsg-1_amd64.deb ... 295s Unpacking r-cran-sf (1.0-19+dfsg-1) ... 295s Selecting previously unselected package r-cran-areal. 295s Preparing to unpack .../213-r-cran-areal_0.1.8+dfsg-2_all.deb ... 295s Unpacking r-cran-areal (0.1.8+dfsg-2) ... 295s Selecting previously unselected package r-cran-sys. 295s Preparing to unpack .../214-r-cran-sys_3.4.3-1_amd64.deb ... 295s Unpacking r-cran-sys (3.4.3-1) ... 295s Selecting previously unselected package r-cran-askpass. 295s Preparing to unpack .../215-r-cran-askpass_1.2.1-1_amd64.deb ... 295s Unpacking r-cran-askpass (1.2.1-1) ... 295s Selecting previously unselected package r-cran-base64enc. 296s Preparing to unpack .../216-r-cran-base64enc_0.1-3-3_amd64.deb ... 296s Unpacking r-cran-base64enc (0.1-3-3) ... 296s Selecting previously unselected package r-cran-bdsmatrix. 296s Preparing to unpack .../217-r-cran-bdsmatrix_1.3-7-1_amd64.deb ... 296s Unpacking r-cran-bdsmatrix (1.3-7-1) ... 296s Selecting previously unselected package r-cran-brio. 296s Preparing to unpack .../218-r-cran-brio_1.1.5-1_amd64.deb ... 296s Unpacking r-cran-brio (1.1.5-1) ... 296s Selecting previously unselected package r-cran-fastmap. 296s Preparing to unpack .../219-r-cran-fastmap_1.2.0-1_amd64.deb ... 296s Unpacking r-cran-fastmap (1.2.0-1) ... 296s Selecting previously unselected package r-cran-cachem. 296s Preparing to unpack .../220-r-cran-cachem_1.1.0-1_amd64.deb ... 296s Unpacking r-cran-cachem (1.1.0-1) ... 296s Selecting previously unselected package r-cran-digest. 296s Preparing to unpack .../221-r-cran-digest_0.6.37-1_amd64.deb ... 296s Unpacking r-cran-digest (0.6.37-1) ... 296s Selecting previously unselected package r-cran-htmltools. 296s Preparing to unpack .../222-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 296s Unpacking r-cran-htmltools (0.5.8.1-1) ... 296s Selecting previously unselected package r-cran-jquerylib. 296s Preparing to unpack .../223-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 296s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 296s Selecting previously unselected package r-cran-jsonlite. 296s Preparing to unpack .../224-r-cran-jsonlite_1.8.9+dfsg-1_amd64.deb ... 296s Unpacking r-cran-jsonlite (1.8.9+dfsg-1) ... 296s Selecting previously unselected package r-cran-memoise. 296s Preparing to unpack .../225-r-cran-memoise_2.0.1-1_all.deb ... 296s Unpacking r-cran-memoise (2.0.1-1) ... 296s Selecting previously unselected package r-cran-mime. 296s Preparing to unpack .../226-r-cran-mime_0.12-2_amd64.deb ... 296s Unpacking r-cran-mime (0.12-2) ... 296s Selecting previously unselected package r-cran-fs. 296s Preparing to unpack .../227-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 296s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 296s Selecting previously unselected package r-cran-rappdirs. 296s Preparing to unpack .../228-r-cran-rappdirs_0.3.3-1_amd64.deb ... 296s Unpacking r-cran-rappdirs (0.3.3-1) ... 296s Selecting previously unselected package r-cran-sass. 296s Preparing to unpack .../229-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 296s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 296s Selecting previously unselected package r-cran-bslib. 296s Preparing to unpack .../230-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 296s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 296s Selecting previously unselected package r-cran-cairo. 296s Preparing to unpack .../231-r-cran-cairo_1.6-2-1_amd64.deb ... 296s Unpacking r-cran-cairo (1.6-2-1) ... 296s Selecting previously unselected package r-cran-ps. 296s Preparing to unpack .../232-r-cran-ps_1.8.1-1_amd64.deb ... 296s Unpacking r-cran-ps (1.8.1-1) ... 296s Selecting previously unselected package r-cran-processx. 296s Preparing to unpack .../233-r-cran-processx_3.8.5-1_amd64.deb ... 296s Unpacking r-cran-processx (3.8.5-1) ... 296s Selecting previously unselected package r-cran-callr. 296s Preparing to unpack .../234-r-cran-callr_3.7.6-1_all.deb ... 296s Unpacking r-cran-callr (3.7.6-1) ... 296s Selecting previously unselected package r-cran-cluster. 296s Preparing to unpack .../235-r-cran-cluster_2.1.8-1_amd64.deb ... 296s Unpacking r-cran-cluster (2.1.8-1) ... 297s Selecting previously unselected package r-cran-clue. 297s Preparing to unpack .../236-r-cran-clue_0.3-66-1_amd64.deb ... 297s Unpacking r-cran-clue (0.3-66-1) ... 297s Selecting previously unselected package r-cran-codetools. 297s Preparing to unpack .../237-r-cran-codetools_0.2-20-1_all.deb ... 297s Unpacking r-cran-codetools (0.2-20-1) ... 297s Selecting previously unselected package r-cran-collapse. 297s Preparing to unpack .../238-r-cran-collapse_2.0.19-1_amd64.deb ... 297s Unpacking r-cran-collapse (2.0.19-1) ... 297s Selecting previously unselected package r-cran-colorspace. 297s Preparing to unpack .../239-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 297s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 297s Selecting previously unselected package r-cran-commonmark. 297s Preparing to unpack .../240-r-cran-commonmark_1.9.2-2_amd64.deb ... 297s Unpacking r-cran-commonmark (1.9.2-2) ... 297s Selecting previously unselected package r-cran-lazyeval. 297s Preparing to unpack .../241-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 297s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 297s Selecting previously unselected package r-cran-rex. 297s Preparing to unpack .../242-r-cran-rex_1.2.1-1_all.deb ... 297s Unpacking r-cran-rex (1.2.1-1) ... 297s Selecting previously unselected package r-cran-curl. 297s Preparing to unpack .../243-r-cran-curl_6.1.0+dfsg-1_amd64.deb ... 297s Unpacking r-cran-curl (6.1.0+dfsg-1) ... 297s Selecting previously unselected package r-cran-openssl. 297s Preparing to unpack .../244-r-cran-openssl_2.2.0+dfsg-1_amd64.deb ... 297s Unpacking r-cran-openssl (2.2.0+dfsg-1) ... 297s Selecting previously unselected package r-cran-httr. 297s Preparing to unpack .../245-r-cran-httr_1.4.7+dfsg-1_all.deb ... 297s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 297s Selecting previously unselected package r-cran-crayon. 297s Preparing to unpack .../246-r-cran-crayon_1.5.3-1_all.deb ... 297s Unpacking r-cran-crayon (1.5.3-1) ... 297s Selecting previously unselected package r-cran-yaml. 297s Preparing to unpack .../247-r-cran-yaml_2.3.10-1_amd64.deb ... 297s Unpacking r-cran-yaml (2.3.10-1) ... 297s Selecting previously unselected package r-cran-covr. 297s Preparing to unpack .../248-r-cran-covr_3.6.4+dfsg-1_amd64.deb ... 297s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 297s Selecting previously unselected package r-cran-cpp11. 297s Preparing to unpack .../249-r-cran-cpp11_0.5.1-1_all.deb ... 297s Unpacking r-cran-cpp11 (0.5.1-1) ... 297s Selecting previously unselected package r-cran-deldir. 297s Preparing to unpack .../250-r-cran-deldir_2.0-4-1build1_amd64.deb ... 297s Unpacking r-cran-deldir (2.0-4-1build1) ... 297s Selecting previously unselected package r-cran-desc. 297s Preparing to unpack .../251-r-cran-desc_1.4.3-1_all.deb ... 297s Unpacking r-cran-desc (1.4.3-1) ... 297s Selecting previously unselected package r-cran-diffobj. 297s Preparing to unpack .../252-r-cran-diffobj_0.3.5-1_amd64.deb ... 297s Unpacking r-cran-diffobj (0.3.5-1) ... 297s Selecting previously unselected package r-cran-evaluate. 297s Preparing to unpack .../253-r-cran-evaluate_1.0.3-1_all.deb ... 297s Unpacking r-cran-evaluate (1.0.3-1) ... 297s Selecting previously unselected package r-cran-farver. 297s Preparing to unpack .../254-r-cran-farver_2.1.2-1_amd64.deb ... 297s Unpacking r-cran-farver (2.1.2-1) ... 297s Selecting previously unselected package r-cran-fnn. 297s Preparing to unpack .../255-r-cran-fnn_1.1.4.1-1_amd64.deb ... 297s Unpacking r-cran-fnn (1.1.4.1-1) ... 297s Selecting previously unselected package r-cran-fontawesome. 298s Preparing to unpack .../256-r-cran-fontawesome_0.5.3-1_all.deb ... 298s Unpacking r-cran-fontawesome (0.5.3-1) ... 298s Selecting previously unselected package r-cran-formula. 298s Preparing to unpack .../257-r-cran-formula_1.2-5-1_all.deb ... 298s Unpacking r-cran-formula (1.2-5-1) ... 298s Selecting previously unselected package r-cran-globals. 298s Preparing to unpack .../258-r-cran-globals_0.16.3-1_all.deb ... 298s Unpacking r-cran-globals (0.16.3-1) ... 298s Selecting previously unselected package r-cran-listenv. 298s Preparing to unpack .../259-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 298s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 298s Selecting previously unselected package r-cran-parallelly. 298s Preparing to unpack .../260-r-cran-parallelly_1.41.0-1_amd64.deb ... 298s Unpacking r-cran-parallelly (1.41.0-1) ... 298s Selecting previously unselected package r-cran-future. 298s Preparing to unpack .../261-r-cran-future_1.34.0+dfsg-1_all.deb ... 298s Unpacking r-cran-future (1.34.0+dfsg-1) ... 298s Selecting previously unselected package r-cran-future.apply. 298s Preparing to unpack .../262-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 298s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 298s Selecting previously unselected package r-cran-gtable. 298s Preparing to unpack .../263-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 298s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 298s Selecting previously unselected package r-cran-isoband. 298s Preparing to unpack .../264-r-cran-isoband_0.2.7-1_amd64.deb ... 298s Unpacking r-cran-isoband (0.2.7-1) ... 298s Selecting previously unselected package r-cran-lattice. 298s Preparing to unpack .../265-r-cran-lattice_0.22-6-1_amd64.deb ... 298s Unpacking r-cran-lattice (0.22-6-1) ... 298s Selecting previously unselected package r-cran-nlme. 298s Preparing to unpack .../266-r-cran-nlme_3.1.167-1_amd64.deb ... 298s Unpacking r-cran-nlme (3.1.167-1) ... 298s Selecting previously unselected package r-cran-matrix. 298s Preparing to unpack .../267-r-cran-matrix_1.7-2-1_amd64.deb ... 298s Unpacking r-cran-matrix (1.7-2-1) ... 298s Selecting previously unselected package r-cran-mgcv. 298s Preparing to unpack .../268-r-cran-mgcv_1.9-1-1_amd64.deb ... 298s Unpacking r-cran-mgcv (1.9-1-1) ... 298s Selecting previously unselected package r-cran-labeling. 298s Preparing to unpack .../269-r-cran-labeling_0.4.3-1_all.deb ... 298s Unpacking r-cran-labeling (0.4.3-1) ... 298s Selecting previously unselected package r-cran-munsell. 298s Preparing to unpack .../270-r-cran-munsell_0.5.1-1_all.deb ... 298s Unpacking r-cran-munsell (0.5.1-1) ... 298s Selecting previously unselected package r-cran-rcolorbrewer. 298s Preparing to unpack .../271-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 298s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 298s Selecting previously unselected package r-cran-viridislite. 298s Preparing to unpack .../272-r-cran-viridislite_0.4.2-2_all.deb ... 298s Unpacking r-cran-viridislite (0.4.2-2) ... 298s Selecting previously unselected package r-cran-scales. 298s Preparing to unpack .../273-r-cran-scales_1.3.0-1_all.deb ... 298s Unpacking r-cran-scales (1.3.0-1) ... 298s Selecting previously unselected package r-cran-ggplot2. 298s Preparing to unpack .../274-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 298s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 299s Selecting previously unselected package r-cran-tweenr. 299s Preparing to unpack .../275-r-cran-tweenr_2.0.3-1_amd64.deb ... 299s Unpacking r-cran-tweenr (2.0.3-1) ... 299s Selecting previously unselected package r-cran-polyclip. 299s Preparing to unpack .../276-r-cran-polyclip_1.10-7-1_amd64.deb ... 299s Unpacking r-cran-polyclip (1.10-7-1) ... 299s Selecting previously unselected package r-cran-systemfonts. 299s Preparing to unpack .../277-r-cran-systemfonts_1.2.1-1_amd64.deb ... 299s Unpacking r-cran-systemfonts (1.2.1-1) ... 299s Selecting previously unselected package r-cran-rcppeigen. 299s Preparing to unpack .../278-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 299s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 299s Selecting previously unselected package r-cran-ggforce. 299s Preparing to unpack .../279-r-cran-ggforce_0.4.2-1_amd64.deb ... 299s Unpacking r-cran-ggforce (0.4.2-1) ... 299s Selecting previously unselected package r-cran-stringi. 299s Preparing to unpack .../280-r-cran-stringi_1.8.4-1build1_amd64.deb ... 299s Unpacking r-cran-stringi (1.8.4-1build1) ... 299s Selecting previously unselected package r-cran-stringr. 299s Preparing to unpack .../281-r-cran-stringr_1.5.1-1_all.deb ... 299s Unpacking r-cran-stringr (1.5.1-1) ... 299s Selecting previously unselected package r-cran-ggthemes. 299s Preparing to unpack .../282-r-cran-ggthemes_5.1.0-1_all.deb ... 299s Unpacking r-cran-ggthemes (5.1.0-1) ... 299s Selecting previously unselected package r-cran-goftest. 299s Preparing to unpack .../283-r-cran-goftest_1.2-3-1_amd64.deb ... 299s Unpacking r-cran-goftest (1.2-3-1) ... 299s Selecting previously unselected package r-cran-gridextra. 299s Preparing to unpack .../284-r-cran-gridextra_2.3-3build1_all.deb ... 299s Unpacking r-cran-gridextra (2.3-3build1) ... 299s Selecting previously unselected package r-cran-xfun. 299s Preparing to unpack .../285-r-cran-xfun_0.50+dfsg-1_amd64.deb ... 299s Unpacking r-cran-xfun (0.50+dfsg-1) ... 299s Selecting previously unselected package r-cran-highr. 299s Preparing to unpack .../286-r-cran-highr_0.11+dfsg-1_all.deb ... 299s Unpacking r-cran-highr (0.11+dfsg-1) ... 299s Selecting previously unselected package r-cran-later. 299s Preparing to unpack .../287-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 299s Unpacking r-cran-later (1.4.1+dfsg-1) ... 299s Selecting previously unselected package r-cran-promises. 299s Preparing to unpack .../288-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 299s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 299s Selecting previously unselected package r-cran-httpuv. 299s Preparing to unpack .../289-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 299s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 299s Selecting previously unselected package r-cran-intervals. 299s Preparing to unpack .../290-r-cran-intervals_0.15.5-1_amd64.deb ... 299s Unpacking r-cran-intervals (0.15.5-1) ... 299s Selecting previously unselected package libjs-mathjax. 299s Preparing to unpack .../291-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 299s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 300s Selecting previously unselected package r-cran-knitr. 300s Preparing to unpack .../292-r-cran-knitr_1.49+dfsg-1_all.deb ... 300s Unpacking r-cran-knitr (1.49+dfsg-1) ... 300s Selecting previously unselected package r-cran-zoo. 300s Preparing to unpack .../293-r-cran-zoo_1.8-12-2_amd64.deb ... 300s Unpacking r-cran-zoo (1.8-12-2) ... 300s Selecting previously unselected package r-cran-lmtest. 300s Preparing to unpack .../294-r-cran-lmtest_0.9.40-1_amd64.deb ... 300s Unpacking r-cran-lmtest (0.9.40-1) ... 300s Selecting previously unselected package r-cran-lwgeom. 300s Preparing to unpack .../295-r-cran-lwgeom_0.2-14-1_amd64.deb ... 300s Unpacking r-cran-lwgeom (0.2-14-1) ... 300s Selecting previously unselected package r-cran-maps. 300s Preparing to unpack .../296-r-cran-maps_3.4.2-1_amd64.deb ... 300s Unpacking r-cran-maps (3.4.2-1) ... 300s Selecting previously unselected package r-cran-mapdata. 301s Preparing to unpack .../297-r-cran-mapdata_2.3.1-1_amd64.deb ... 301s Unpacking r-cran-mapdata (2.3.1-1) ... 301s Selecting previously unselected package r-cran-misctools. 301s Preparing to unpack .../298-r-cran-misctools_0.6-28-1_all.deb ... 301s Unpacking r-cran-misctools (0.6-28-1) ... 301s Selecting previously unselected package r-cran-sandwich. 301s Preparing to unpack .../299-r-cran-sandwich_3.1-1-1_all.deb ... 301s Unpacking r-cran-sandwich (3.1-1-1) ... 301s Selecting previously unselected package r-cran-maxlik. 301s Preparing to unpack .../300-r-cran-maxlik_1.5-2.1-1_all.deb ... 301s Unpacking r-cran-maxlik (1.5-2.1-1) ... 301s Selecting previously unselected package r-cran-rnetcdf. 301s Preparing to unpack .../301-r-cran-rnetcdf_2.9-1-1build2_amd64.deb ... 301s Unpacking r-cran-rnetcdf (2.9-1-1build2) ... 301s Selecting previously unselected package r-cran-tidyr. 301s Preparing to unpack .../302-r-cran-tidyr_1.3.1-1_amd64.deb ... 301s Unpacking r-cran-tidyr (1.3.1-1) ... 301s Selecting previously unselected package r-cran-ncmeta. 301s Preparing to unpack .../303-r-cran-ncmeta_0.3.6-1_all.deb ... 301s Unpacking r-cran-ncmeta (0.3.6-1) ... 301s Selecting previously unselected package r-cran-stars. 301s Preparing to unpack .../304-r-cran-stars_0.6-7-1_all.deb ... 301s Unpacking r-cran-stars (0.6-7-1) ... 301s Selecting previously unselected package r-cran-ncdfgeom. 301s Preparing to unpack .../305-r-cran-ncdfgeom_1.1.6+dfsg-1_all.deb ... 301s Unpacking r-cran-ncdfgeom (1.1.6+dfsg-1) ... 301s Selecting previously unselected package r-cran-pbapply. 301s Preparing to unpack .../306-r-cran-pbapply_1.7-2-1_all.deb ... 301s Unpacking r-cran-pbapply (1.7-2-1) ... 301s Selecting previously unselected package r-cran-pcict. 301s Preparing to unpack .../307-r-cran-pcict_0.5-4.4-1_amd64.deb ... 301s Unpacking r-cran-pcict (0.5-4.4-1) ... 301s Selecting previously unselected package r-cran-pkgbuild. 301s Preparing to unpack .../308-r-cran-pkgbuild_1.4.6-1_all.deb ... 301s Unpacking r-cran-pkgbuild (1.4.6-1) ... 301s Selecting previously unselected package r-cran-rprojroot. 301s Preparing to unpack .../309-r-cran-rprojroot_2.0.4-2_all.deb ... 301s Unpacking r-cran-rprojroot (2.0.4-2) ... 301s Selecting previously unselected package r-cran-pkgload. 301s Preparing to unpack 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because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 307s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 307s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 307s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 307s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 307s Setting up r-cran-future.apply (1.11.3+dfsg-1) ... 307s Setting up r-cran-systemfonts (1.2.1-1) ... 307s Setting up r-cran-httr (1.4.7+dfsg-1) ... 307s Setting up r-cran-gridextra (2.3-3build1) ... 307s Setting up r-cran-scales (1.3.0-1) ... 307s Setting up r-cran-memoise (2.0.1-1) ... 307s Setting up r-cran-covr (3.6.4+dfsg-1) ... 307s Setting up r-cran-promises (1.3.2+dfsg-1) ... 307s Setting up r-cran-purrr (1.0.2-1) ... 307s Setting up r-cran-e1071 (1.7-16-1) ... 307s Setting up r-cran-spatstat.data (3.1-4-1) ... 307s 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man-db (2.13.0-1) ... 311s autopkgtest [18:46:29]: testbed environment configured for cross-architecture building 311s autopkgtest [18:46:29]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 311s autopkgtest [18:46:29]: test pkg-r-autopkgtest: [----------------------- 311s Test: Try to load the R library stars 311s 311s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 311s Copyright (C) 2024 The R Foundation for Statistical Computing 311s Platform: x86_64-pc-linux-gnu 311s 311s R is free software and comes with ABSOLUTELY NO WARRANTY. 311s You are welcome to redistribute it under certain conditions. 311s Type 'license()' or 'licence()' for distribution details. 311s 311s R is a collaborative project with many contributors. 311s Type 'contributors()' for more information and 311s 'citation()' on how to cite R or R packages in publications. 311s 311s Type 'demo()' for some demos, 'help()' for on-line help, or 311s 'help.start()' for an HTML browser interface to help. 311s Type 'q()' to quit R. 311s 311s Loading required package: abind 311s > library('stars') 311s Loading required package: sf 312s Linking to GEOS 3.13.0, GDAL 3.10.1, PROJ 9.5.1; sf_use_s2() is TRUE 312s > 312s > 312s Other tests are currently unsupported! 312s They will be progressively added. 312s autopkgtest [18:46:30]: test pkg-r-autopkgtest: -----------------------] 312s pkg-r-autopkgtest PASS 312s autopkgtest [18:46:30]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 313s autopkgtest [18:46:31]: @@@@@@@@@@@@@@@@@@@@ summary 313s run-unit-test PASS 313s pkg-r-autopkgtest PASS 336s nova [W] Skipping flock for amd64 336s Creating nova instance adt-plucky-i386-r-cran-stars-20250203-184118-juju-7f2275-prod-proposed-migration-environment-15-92278b9a-d559-438b-a52b-6bdfcc283281 from image adt/ubuntu-plucky-amd64-server-20250203.img (UUID 15dc8987-472a-4c3f-84bb-7526fd9e1ef2)... 336s nova [W] Timed out waiting for bba600a3-2c2b-4b0f-874a-cd087a1b9367 to get deleted. 336s nova [W] Skipping flock for amd64 336s Creating nova instance adt-plucky-i386-r-cran-stars-20250203-184118-juju-7f2275-prod-proposed-migration-environment-15-92278b9a-d559-438b-a52b-6bdfcc283281 from image adt/ubuntu-plucky-amd64-server-20250203.img (UUID 15dc8987-472a-4c3f-84bb-7526fd9e1ef2)... 336s nova [W] Timed out waiting for 48d0ad3c-41b6-4886-b6d2-d21275787e64 to get deleted.