0s autopkgtest [01:49:04]: starting date and time: 2024-11-02 01:49:04+0000 0s autopkgtest [01:49:04]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [01:49:04]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.njjacmli/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-curl --apt-upgrade r-cran-biocmanager --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-curl/5.2.3+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@lcy02-20.secgroup --name adt-plucky-i386-r-cran-biocmanager-20241102-012332-juju-7f2275-prod-proposed-migration-environment-15-bacae040-7b1e-41da-b12a-849d1c17995f --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 45s autopkgtest [01:49:49]: testbed dpkg architecture: amd64 45s autopkgtest [01:49:49]: testbed apt version: 2.9.8 45s autopkgtest [01:49:49]: test architecture: i386 45s autopkgtest [01:49:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup 46s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 46s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2614 kB] 46s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [41.0 kB] 46s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [178 kB] 46s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 46s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [166 kB] 46s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [239 kB] 46s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 46s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [1933 kB] 46s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [945 kB] 46s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [22.0 kB] 46s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [68.6 kB] 46s Fetched 6321 kB in 1s (10.2 MB/s) 46s Reading package lists... 48s Reading package lists... 48s Building dependency tree... 48s Reading state information... 49s Calculating upgrade... 49s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 49s Reading package lists... 49s Building dependency tree... 49s Reading state information... 49s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 50s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 50s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 50s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 50s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 51s Reading package lists... 51s Reading package lists... 51s Building dependency tree... 51s Reading state information... 51s Calculating upgrade... 52s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 52s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 53s autopkgtest [01:49:57]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 53s autopkgtest [01:49:57]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-biocmanager 54s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-biocmanager 1.30.22+dfsg-2 (dsc) [2330 B] 54s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-biocmanager 1.30.22+dfsg-2 (tar) [184 kB] 54s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-biocmanager 1.30.22+dfsg-2 (diff) [6120 B] 54s gpgv: Signature made Tue Aug 15 13:38:20 2023 UTC 54s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 54s gpgv: issuer "tille@debian.org" 54s gpgv: Can't check signature: No public key 54s dpkg-source: warning: cannot verify inline signature for ./r-cran-biocmanager_1.30.22+dfsg-2.dsc: no acceptable signature found 54s autopkgtest [01:49:58]: testing package r-cran-biocmanager version 1.30.22+dfsg-2 54s autopkgtest [01:49:58]: build not needed 59s autopkgtest [01:50:03]: test run-unit-test: preparing testbed 63s Note, using file '/tmp/autopkgtest.UoK8S7/1-autopkgtest-satdep.dsc' to get the build dependencies 63s Reading package lists... 63s Building dependency tree... 63s Reading state information... 64s Starting pkgProblemResolver with broken count: 0 64s Starting 2 pkgProblemResolver with broken count: 0 64s Done 64s The following NEW packages will be installed: 64s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 64s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 64s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-14 64s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 64s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu javascript-common libasan8 64s libblas3 libcairo2 libcc1-0 libdatrie1 libdeflate0 libfontconfig1 64s libgcc-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 64s libice6 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap 64s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 64s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 64s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 64s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack3 64s liblerc4 liblsan0 liblua5.4-0 libmpc3 libpango-1.0-0 libpangocairo-1.0-0 64s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libquadmath0 64s libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0 64s libtiff6 libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 64s libxft2 libxrender1 libxss1 libxt6t64 littler node-bootstrap-sass 64s node-html5shiv node-normalize.css pandoc pandoc-data r-base-core 64s r-bioc-biocgenerics r-bioc-biocversion r-cran-base64enc r-cran-biocmanager 64s r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli 64s r-cran-commonmark r-cran-crayon r-cran-curl r-cran-desc r-cran-diffobj 64s r-cran-digest r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-fontawesome 64s r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv 64s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lifecycle 64s r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime r-cran-pillar 64s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 64s r-cran-praise r-cran-processx r-cran-promises r-cran-ps r-cran-r6 64s r-cran-rappdirs r-cran-rcpp r-cran-rematch2 r-cran-remotes r-cran-rlang 64s r-cran-rmarkdown r-cran-rprojroot r-cran-sass r-cran-shiny 64s r-cran-sourcetools r-cran-testthat r-cran-tibble r-cran-tinytex r-cran-utf8 64s r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml 64s unzip x11-common xdg-utils zip 64s 0 upgraded, 160 newly installed, 0 to remove and 0 not upgraded. 64s Need to get 175 MB of archives. 64s After this operation, 636 MB of additional disk space will be used. 64s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 64s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 64s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-7ubuntu1 [11.9 MB] 65s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-7ubuntu1 [1026 B] 65s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 65s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 65s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-7ubuntu1 [47.6 kB] 65s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-7ubuntu1 [148 kB] 65s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-7ubuntu1 [29.1 kB] 65s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-7ubuntu1 [2998 kB] 65s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-7ubuntu1 [1316 kB] 65s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-7ubuntu1 [2733 kB] 65s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-7ubuntu1 [1177 kB] 65s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-7ubuntu1 [1634 kB] 65s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-7ubuntu1 [153 kB] 65s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-7ubuntu1 [2814 kB] 65s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-7ubuntu1 [23.4 MB] 65s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-7ubuntu1 [526 kB] 65s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 65s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 65s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-7ubuntu1 [2503 kB] 65s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-7ubuntu1 [13.4 MB] 65s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-7ubuntu1 [19.8 kB] 65s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 65s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 65s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 65s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 65s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 65s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 65s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 65s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 65s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 65s Get:33 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 65s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 65s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 javascript-common all 11+nmu1 [5936 B] 65s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 65s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.42.2-1build1 [279 kB] 65s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 65s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 65s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 65s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 65s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 65s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.21-1 [49.8 kB] 65s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-7ubuntu1 [909 kB] 65s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 65s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 9.0.0-1 [487 kB] 65s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 65s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.0.10-1build3 [41.4 kB] 65s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 65s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 65s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 65s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 65s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 65s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 65s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 65s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 65s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 65s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 65s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 65s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 65s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 65s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 65s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 65s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 65s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 65s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 65s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.6-3build2 [166 kB] 65s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 65s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 65s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.54.0+ds-2 [235 kB] 65s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-2 [49.1 kB] 65s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-2 [28.8 kB] 65s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper1 amd64 1.1.29build1 [13.4 kB] 65s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 1.1.29build1 [8650 B] 65s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 65s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.3-1build3 [15.7 kB] 65s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB] 65s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 65s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 65s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 65s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 65s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 65s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB] 65s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 65s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14 [174 kB] 65s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 65s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 65s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.1-1 [28.5 MB] 65s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-1 [96.0 kB] 65s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-1 [2486 B] 65s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 65s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 65s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 65s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc-data all 3.1.11.1-3 [78.7 kB] 65s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 66s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocgenerics all 0.50.0-2 [605 kB] 66s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-bioc-biocversion all 3.19.1-1 [11.2 kB] 66s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 66s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 66s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 66s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.4-1 [1708 kB] 66s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 66s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 66s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-digest amd64 0.6.36-1 [199 kB] 66s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 66s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 66s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 66s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 66s Get:109 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 66s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 66s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 66s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 66s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fs amd64 1.6.4+dfsg-1 [245 kB] 66s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 66s Get:115 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 66s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 66s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-bslib all 0.7.0+dfsg-1 [4255 kB] 66s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 66s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-processx amd64 3.8.4-1 [353 kB] 66s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 66s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 66s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 66s Get:123 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 r-cran-curl amd64 5.2.3+dfsg-1 [179 kB] 66s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 66s Get:125 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 66s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-evaluate all 0.24.0-1 [93.5 kB] 66s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 66s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 66s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xfun amd64 0.45+dfsg-1 [518 kB] 66s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 66s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 66s Get:132 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.13-1 [1990 kB] 66s Get:133 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 66s Get:134 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 66s Get:135 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-promises amd64 1.3.0+dfsg-1 [287 kB] 66s Get:136 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 66s Get:137 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-yaml amd64 2.3.8-2 [108 kB] 66s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 66s Get:139 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-knitr all 1.47+dfsg-1 [911 kB] 66s Get:140 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 66s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 66s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 66s Get:143 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgbuild all 1.4.4-1 [212 kB] 66s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 66s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 66s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.0+dfsg-1 [228 kB] 66s Get:147 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 66s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 66s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 66s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 66s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-remotes all 2.5.0+dfsg-1 [447 kB] 66s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tinytex all 0.51-1 [145 kB] 66s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 66s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 66s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 66s Get:156 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 66s Get:157 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-shiny all 1.8.1.1+dfsg-1 [2873 kB] 66s Get:158 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rmarkdown all 2.27+dfsg-1 [1501 kB] 66s Get:159 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 66s Get:160 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-testthat amd64 3.2.1.1-1 [1636 kB] 66s Preconfiguring packages ... 66s Fetched 175 MB in 1s (124 MB/s) 66s Selecting previously unselected package libisl23:amd64. 67s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75323 files and directories currently installed.) 67s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 67s Unpacking libisl23:amd64 (0.27-1) ... 67s Selecting previously unselected package libmpc3:amd64. 67s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 67s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 67s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 67s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-7ubuntu1_amd64.deb ... 67s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 67s Selecting previously unselected package cpp-14. 67s Preparing to unpack .../003-cpp-14_14.2.0-7ubuntu1_amd64.deb ... 67s Unpacking cpp-14 (14.2.0-7ubuntu1) ... 67s Selecting previously unselected package cpp-x86-64-linux-gnu. 67s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 67s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 67s Selecting previously unselected package cpp. 67s Preparing to unpack .../005-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 67s Unpacking cpp (4:14.1.0-2ubuntu1) ... 67s Selecting previously unselected package libcc1-0:amd64. 67s Preparing to unpack .../006-libcc1-0_14.2.0-7ubuntu1_amd64.deb ... 67s Unpacking libcc1-0:amd64 (14.2.0-7ubuntu1) ... 67s Selecting previously unselected package libgomp1:amd64. 67s Preparing to unpack .../007-libgomp1_14.2.0-7ubuntu1_amd64.deb ... 67s Unpacking libgomp1:amd64 (14.2.0-7ubuntu1) ... 67s Selecting previously unselected package libitm1:amd64. 67s Preparing to unpack .../008-libitm1_14.2.0-7ubuntu1_amd64.deb ... 67s Unpacking libitm1:amd64 (14.2.0-7ubuntu1) ... 67s Selecting previously unselected package libasan8:amd64. 67s Preparing to unpack .../009-libasan8_14.2.0-7ubuntu1_amd64.deb ... 67s Unpacking libasan8:amd64 (14.2.0-7ubuntu1) ... 67s Selecting previously unselected package liblsan0:amd64. 67s Preparing to unpack .../010-liblsan0_14.2.0-7ubuntu1_amd64.deb ... 67s Unpacking liblsan0:amd64 (14.2.0-7ubuntu1) ... 67s Selecting previously unselected package libtsan2:amd64. 67s Preparing to unpack .../011-libtsan2_14.2.0-7ubuntu1_amd64.deb ... 67s Unpacking libtsan2:amd64 (14.2.0-7ubuntu1) ... 67s Selecting previously unselected package libubsan1:amd64. 67s Preparing to unpack .../012-libubsan1_14.2.0-7ubuntu1_amd64.deb ... 67s Unpacking libubsan1:amd64 (14.2.0-7ubuntu1) ... 67s Selecting previously unselected package libhwasan0:amd64. 67s Preparing to unpack .../013-libhwasan0_14.2.0-7ubuntu1_amd64.deb ... 67s Unpacking libhwasan0:amd64 (14.2.0-7ubuntu1) ... 67s Selecting previously unselected package libquadmath0:amd64. 67s Preparing to unpack .../014-libquadmath0_14.2.0-7ubuntu1_amd64.deb ... 67s Unpacking libquadmath0:amd64 (14.2.0-7ubuntu1) ... 67s Selecting previously unselected package libgcc-14-dev:amd64. 67s Preparing to unpack .../015-libgcc-14-dev_14.2.0-7ubuntu1_amd64.deb ... 67s Unpacking libgcc-14-dev:amd64 (14.2.0-7ubuntu1) ... 67s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 67s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-7ubuntu1_amd64.deb ... 67s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 68s Selecting previously unselected package gcc-14. 68s Preparing to unpack .../017-gcc-14_14.2.0-7ubuntu1_amd64.deb ... 68s Unpacking gcc-14 (14.2.0-7ubuntu1) ... 68s Selecting previously unselected package gcc-x86-64-linux-gnu. 68s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 68s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 68s Selecting previously unselected package gcc. 68s Preparing to unpack .../019-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 68s Unpacking gcc (4:14.1.0-2ubuntu1) ... 68s Selecting previously unselected package libstdc++-14-dev:amd64. 68s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-7ubuntu1_amd64.deb ... 68s Unpacking libstdc++-14-dev:amd64 (14.2.0-7ubuntu1) ... 68s Selecting previously unselected package g++-14-x86-64-linux-gnu. 68s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-7ubuntu1_amd64.deb ... 68s Unpacking g++-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 68s Selecting previously unselected package g++-14. 68s Preparing to unpack .../022-g++-14_14.2.0-7ubuntu1_amd64.deb ... 68s Unpacking g++-14 (14.2.0-7ubuntu1) ... 68s Selecting previously unselected package g++-x86-64-linux-gnu. 68s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 68s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 68s Selecting previously unselected package g++. 68s Preparing to unpack .../024-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 68s Unpacking g++ (4:14.1.0-2ubuntu1) ... 68s Selecting previously unselected package build-essential. 68s Preparing to unpack .../025-build-essential_12.10ubuntu1_amd64.deb ... 68s Unpacking build-essential (12.10ubuntu1) ... 68s Selecting previously unselected package fonts-dejavu-mono. 68s Preparing to unpack .../026-fonts-dejavu-mono_2.37-8_all.deb ... 68s Unpacking fonts-dejavu-mono (2.37-8) ... 68s Selecting previously unselected package fonts-dejavu-core. 68s Preparing to unpack .../027-fonts-dejavu-core_2.37-8_all.deb ... 68s Unpacking fonts-dejavu-core (2.37-8) ... 68s Selecting previously unselected package fontconfig-config. 69s Preparing to unpack .../028-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 69s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 69s Selecting previously unselected package libfontconfig1:amd64. 69s Preparing to unpack .../029-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 69s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 69s Selecting previously unselected package fontconfig. 69s Preparing to unpack .../030-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ... 69s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 69s Selecting previously unselected package fonts-font-awesome. 69s Preparing to unpack .../031-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 69s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 69s Selecting previously unselected package fonts-glyphicons-halflings. 69s Preparing to unpack .../032-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 69s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 69s Selecting previously unselected package fonts-mathjax. 69s Preparing to unpack .../033-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 69s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 69s Selecting previously unselected package javascript-common. 69s Preparing to unpack .../034-javascript-common_11+nmu1_all.deb ... 69s Unpacking javascript-common (11+nmu1) ... 69s Selecting previously unselected package libblas3:amd64. 69s Preparing to unpack .../035-libblas3_3.12.0-3build2_amd64.deb ... 69s Unpacking libblas3:amd64 (3.12.0-3build2) ... 69s Selecting previously unselected package libpixman-1-0:amd64. 69s Preparing to unpack .../036-libpixman-1-0_0.42.2-1build1_amd64.deb ... 69s Unpacking libpixman-1-0:amd64 (0.42.2-1build1) ... 69s Selecting previously unselected package libxcb-render0:amd64. 69s Preparing to unpack .../037-libxcb-render0_1.17.0-2_amd64.deb ... 69s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 69s Selecting previously unselected package libxcb-shm0:amd64. 69s Preparing to unpack .../038-libxcb-shm0_1.17.0-2_amd64.deb ... 69s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 69s Selecting previously unselected package libxrender1:amd64. 69s Preparing to unpack .../039-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 69s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 69s Selecting previously unselected package libcairo2:amd64. 69s Preparing to unpack .../040-libcairo2_1.18.2-2_amd64.deb ... 69s Unpacking libcairo2:amd64 (1.18.2-2) ... 69s Selecting previously unselected package libdatrie1:amd64. 69s Preparing to unpack .../041-libdatrie1_0.2.13-3build1_amd64.deb ... 69s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 69s Selecting previously unselected package libdeflate0:amd64. 69s Preparing to unpack .../042-libdeflate0_1.21-1_amd64.deb ... 69s Unpacking libdeflate0:amd64 (1.21-1) ... 69s Selecting previously unselected package libgfortran5:amd64. 69s Preparing to unpack .../043-libgfortran5_14.2.0-7ubuntu1_amd64.deb ... 69s Unpacking libgfortran5:amd64 (14.2.0-7ubuntu1) ... 69s Selecting previously unselected package libgraphite2-3:amd64. 69s Preparing to unpack .../044-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 69s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 69s Selecting previously unselected package libharfbuzz0b:amd64. 69s Preparing to unpack .../045-libharfbuzz0b_9.0.0-1_amd64.deb ... 69s Unpacking libharfbuzz0b:amd64 (9.0.0-1) ... 69s Selecting previously unselected package x11-common. 69s Preparing to unpack .../046-x11-common_1%3a7.7+23ubuntu3_all.deb ... 69s Unpacking x11-common (1:7.7+23ubuntu3) ... 69s Selecting previously unselected package libice6:amd64. 69s Preparing to unpack .../047-libice6_2%3a1.0.10-1build3_amd64.deb ... 69s Unpacking libice6:amd64 (2:1.0.10-1build3) ... 70s Selecting previously unselected package libjpeg-turbo8:amd64. 70s Preparing to unpack .../048-libjpeg-turbo8_2.1.5-2ubuntu2_amd64.deb ... 70s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 70s Selecting previously unselected package libjpeg8:amd64. 70s Preparing to unpack .../049-libjpeg8_8c-2ubuntu11_amd64.deb ... 70s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 70s Selecting previously unselected package libjs-bootstrap. 70s Preparing to unpack .../050-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 70s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 70s Selecting previously unselected package libjs-popper.js. 70s Preparing to unpack .../051-libjs-popper.js_1.16.1+ds-6_all.deb ... 70s Unpacking libjs-popper.js (1.16.1+ds-6) ... 70s Selecting previously unselected package libjs-bootstrap4. 70s Preparing to unpack .../052-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 70s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 70s Selecting previously unselected package libjs-d3. 70s Preparing to unpack .../053-libjs-d3_3.5.17-4_all.deb ... 70s Unpacking libjs-d3 (3.5.17-4) ... 70s Selecting previously unselected package libjs-es5-shim. 70s Preparing to unpack .../054-libjs-es5-shim_4.6.7-2_all.deb ... 70s Unpacking libjs-es5-shim (4.6.7-2) ... 70s Selecting previously unselected package libjs-highlight.js. 70s Preparing to unpack .../055-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 70s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 70s Selecting previously unselected package libjs-jquery. 70s Preparing to unpack .../056-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 70s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 70s Selecting previously unselected package libjs-jquery-datatables. 70s Preparing to unpack .../057-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 70s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 70s Selecting previously unselected package libjs-sifter.js. 70s Preparing to unpack .../058-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 70s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 70s Selecting previously unselected package libjs-microplugin.js. 70s Preparing to unpack .../059-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 70s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 70s Selecting previously unselected package libjs-jquery-selectize.js. 70s Preparing to unpack .../060-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 70s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 70s Selecting previously unselected package libjs-jquery-ui. 70s Preparing to unpack .../061-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 70s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 70s Selecting previously unselected package libjs-json. 70s Preparing to unpack .../062-libjs-json_0~20221030+~1.0.8-1_all.deb ... 70s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 70s Selecting previously unselected package libjs-prettify. 70s Preparing to unpack .../063-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 70s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 70s Selecting previously unselected package liblapack3:amd64. 70s Preparing to unpack .../064-liblapack3_3.12.0-3build2_amd64.deb ... 70s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 70s Selecting previously unselected package liblerc4:amd64. 70s Preparing to unpack .../065-liblerc4_4.0.0+ds-4ubuntu2_amd64.deb 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Selecting previously unselected package libpangocairo-1.0-0:amd64. 70s Preparing to unpack .../071-libpangocairo-1.0-0_1.54.0+ds-2_amd64.deb ... 70s Unpacking libpangocairo-1.0-0:amd64 (1.54.0+ds-2) ... 70s Selecting previously unselected package libpaper1:amd64. 70s Preparing to unpack .../072-libpaper1_1.1.29build1_amd64.deb ... 70s Unpacking libpaper1:amd64 (1.1.29build1) ... 70s Selecting previously unselected package libpaper-utils. 70s Preparing to unpack .../073-libpaper-utils_1.1.29build1_amd64.deb ... 70s Unpacking libpaper-utils (1.1.29build1) ... 70s Selecting previously unselected package libsharpyuv0:amd64. 70s Preparing to unpack .../074-libsharpyuv0_1.4.0-0.1_amd64.deb ... 70s Unpacking libsharpyuv0:amd64 (1.4.0-0.1) ... 70s Selecting previously unselected package libsm6:amd64. 70s Preparing to unpack .../075-libsm6_2%3a1.2.3-1build3_amd64.deb ... 70s Unpacking libsm6:amd64 (2:1.2.3-1build3) ... 70s Selecting previously unselected package libtcl8.6:amd64. 70s Preparing to unpack .../076-libtcl8.6_8.6.14+dfsg-1build1_amd64.deb ... 70s Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 70s Selecting previously unselected package libjbig0:amd64. 70s Preparing to unpack .../077-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 70s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 71s Selecting previously unselected package libwebp7:amd64. 71s Preparing to unpack .../078-libwebp7_1.4.0-0.1_amd64.deb ... 71s Unpacking libwebp7:amd64 (1.4.0-0.1) ... 71s Selecting previously unselected package libtiff6:amd64. 71s Preparing to unpack .../079-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 71s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 71s Selecting previously unselected package libxft2:amd64. 71s Preparing to unpack .../080-libxft2_2.3.6-1build1_amd64.deb ... 71s Unpacking libxft2:amd64 (2.3.6-1build1) ... 71s Selecting previously unselected package libxss1:amd64. 71s Preparing to unpack .../081-libxss1_1%3a1.2.3-1build3_amd64.deb ... 71s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 71s Selecting previously unselected package libtk8.6:amd64. 71s Preparing to unpack .../082-libtk8.6_8.6.14-1build1_amd64.deb ... 71s Unpacking libtk8.6:amd64 (8.6.14-1build1) ... 71s Selecting previously unselected package libxt6t64:amd64. 71s Preparing to unpack .../083-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 71s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 71s Selecting previously unselected package zip. 71s Preparing to unpack .../084-zip_3.0-14_amd64.deb ... 71s Unpacking zip (3.0-14) ... 71s Selecting previously unselected package unzip. 71s Preparing to unpack .../085-unzip_6.0-28ubuntu6_amd64.deb ... 71s Unpacking unzip (6.0-28ubuntu6) ... 71s Selecting previously unselected package xdg-utils. 71s Preparing to unpack .../086-xdg-utils_1.2.1-0ubuntu1_all.deb ... 71s Unpacking xdg-utils (1.2.1-0ubuntu1) ... 71s Selecting previously unselected package r-base-core. 71s Preparing to unpack .../087-r-base-core_4.4.1-1_amd64.deb ... 71s Unpacking r-base-core (4.4.1-1) ... 71s Selecting previously unselected package r-cran-littler. 71s Preparing to unpack .../088-r-cran-littler_0.3.20-1_amd64.deb ... 71s Unpacking r-cran-littler (0.3.20-1) ... 71s Selecting previously unselected package littler. 71s Preparing to unpack .../089-littler_0.3.20-1_all.deb ... 71s Unpacking littler (0.3.20-1) ... 71s Selecting previously unselected package node-bootstrap-sass. 71s Preparing to unpack .../090-node-bootstrap-sass_3.4.3-2_all.deb ... 71s Unpacking node-bootstrap-sass (3.4.3-2) ... 71s Selecting previously unselected package node-html5shiv. 71s Preparing to unpack .../091-node-html5shiv_3.7.3+dfsg-5_all.deb ... 71s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 71s Selecting previously unselected package node-normalize.css. 71s Preparing to unpack .../092-node-normalize.css_8.0.1-5_all.deb ... 71s Unpacking node-normalize.css (8.0.1-5) ... 71s Selecting previously unselected package pandoc-data. 71s Preparing to unpack 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Selecting previously unselected package r-cran-brio. 72s Preparing to unpack .../099-r-cran-brio_1.1.5-1_amd64.deb ... 72s Unpacking r-cran-brio (1.1.5-1) ... 72s Selecting previously unselected package r-cran-rlang. 72s Preparing to unpack .../100-r-cran-rlang_1.1.4-1_amd64.deb ... 72s Unpacking r-cran-rlang (1.1.4-1) ... 72s Selecting previously unselected package r-cran-fastmap. 72s Preparing to unpack .../101-r-cran-fastmap_1.1.1-1_amd64.deb ... 72s Unpacking r-cran-fastmap (1.1.1-1) ... 72s Selecting previously unselected package r-cran-cachem. 72s Preparing to unpack .../102-r-cran-cachem_1.0.8-1_amd64.deb ... 72s Unpacking r-cran-cachem (1.0.8-1) ... 72s Selecting previously unselected package r-cran-digest. 72s Preparing to unpack .../103-r-cran-digest_0.6.36-1_amd64.deb ... 72s Unpacking r-cran-digest (0.6.36-1) ... 72s Selecting previously unselected package r-cran-htmltools. 72s Preparing to unpack .../104-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 72s Unpacking r-cran-htmltools (0.5.8.1-1) ... 72s Selecting previously unselected package r-cran-jquerylib. 72s Preparing to unpack .../105-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 72s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 72s Selecting previously unselected package r-cran-jsonlite. 72s Preparing to unpack .../106-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 72s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 73s Selecting previously unselected package r-cran-cli. 73s Preparing to unpack .../107-r-cran-cli_3.6.2-1_amd64.deb ... 73s Unpacking r-cran-cli (3.6.2-1) ... 73s Selecting previously unselected package r-cran-glue. 73s Preparing to unpack .../108-r-cran-glue_1.7.0-1_amd64.deb ... 73s Unpacking r-cran-glue (1.7.0-1) ... 73s Selecting previously unselected package r-cran-lifecycle. 73s Preparing to unpack .../109-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 73s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 73s Selecting previously unselected package r-cran-memoise. 73s Preparing to unpack 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Preparing to unpack .../122-r-cran-curl_5.2.3+dfsg-1_amd64.deb ... 73s Unpacking r-cran-curl (5.2.3+dfsg-1) ... 73s Selecting previously unselected package r-cran-desc. 73s Preparing to unpack .../123-r-cran-desc_1.4.3-1_all.deb ... 73s Unpacking r-cran-desc (1.4.3-1) ... 73s Selecting previously unselected package r-cran-diffobj. 73s Preparing to unpack .../124-r-cran-diffobj_0.3.5-1_amd64.deb ... 73s Unpacking r-cran-diffobj (0.3.5-1) ... 73s Selecting previously unselected package r-cran-evaluate. 73s Preparing to unpack .../125-r-cran-evaluate_0.24.0-1_all.deb ... 73s Unpacking r-cran-evaluate (0.24.0-1) ... 73s Selecting previously unselected package r-cran-fansi. 73s Preparing to unpack .../126-r-cran-fansi_1.0.5-1_amd64.deb ... 73s Unpacking r-cran-fansi (1.0.5-1) ... 73s Selecting previously unselected package r-cran-fontawesome. 73s Preparing to unpack .../127-r-cran-fontawesome_0.5.2-1_all.deb ... 73s Unpacking r-cran-fontawesome (0.5.2-1) ... 73s Selecting previously unselected package r-cran-xfun. 73s Preparing to unpack .../128-r-cran-xfun_0.45+dfsg-1_amd64.deb ... 73s Unpacking r-cran-xfun (0.45+dfsg-1) ... 74s Selecting previously unselected package r-cran-highr. 74s Preparing to unpack .../129-r-cran-highr_0.11+dfsg-1_all.deb ... 74s Unpacking r-cran-highr (0.11+dfsg-1) ... 74s Selecting previously unselected package r-cran-pkgkitten. 74s Preparing to unpack .../130-r-cran-pkgkitten_0.2.4-1_all.deb ... 74s Unpacking r-cran-pkgkitten (0.2.4-1) ... 74s Selecting previously unselected package r-cran-rcpp. 74s Preparing to unpack .../131-r-cran-rcpp_1.0.13-1_amd64.deb ... 74s Unpacking r-cran-rcpp (1.0.13-1) ... 74s Selecting previously unselected package r-cran-later. 74s Preparing to unpack .../132-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 74s Unpacking r-cran-later (1.3.2+dfsg-1) ... 74s Selecting previously unselected package r-cran-magrittr. 74s Preparing to unpack .../133-r-cran-magrittr_2.0.3-1_amd64.deb ... 74s Unpacking r-cran-magrittr 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package r-cran-withr. 75s Preparing to unpack .../145-r-cran-withr_3.0.0+dfsg-1_all.deb ... 75s Unpacking r-cran-withr (3.0.0+dfsg-1) ... 75s Selecting previously unselected package r-cran-pkgload. 75s Preparing to unpack .../146-r-cran-pkgload_1.4.0-1_all.deb ... 75s Unpacking r-cran-pkgload (1.4.0-1) ... 75s Selecting previously unselected package r-cran-praise. 75s Preparing to unpack .../147-r-cran-praise_1.0.0-4build1_all.deb ... 75s Unpacking r-cran-praise (1.0.0-4build1) ... 75s Selecting previously unselected package r-cran-tibble. 75s Preparing to unpack .../148-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 75s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 75s Selecting previously unselected package r-cran-rematch2. 75s Preparing to unpack .../149-r-cran-rematch2_2.1.2-2build1_all.deb ... 75s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 75s Selecting previously unselected package r-cran-remotes. 75s Preparing to unpack .../150-r-cran-remotes_2.5.0+dfsg-1_all.deb ... 75s Unpacking r-cran-remotes (2.5.0+dfsg-1) ... 75s Selecting previously unselected package r-cran-tinytex. 75s Preparing to unpack .../151-r-cran-tinytex_0.51-1_all.deb ... 75s Unpacking r-cran-tinytex (0.51-1) ... 75s Selecting previously unselected package libjs-modernizr. 75s Preparing to unpack .../152-libjs-modernizr_3.13.0-0.1_all.deb ... 75s Unpacking libjs-modernizr (3.13.0-0.1) ... 75s Selecting previously unselected package r-cran-xtable. 75s Preparing to unpack .../153-r-cran-xtable_1%3a1.8-4-2_all.deb ... 75s Unpacking r-cran-xtable (1:1.8-4-2) ... 75s Selecting previously unselected package r-cran-sourcetools. 75s Preparing to unpack .../154-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 75s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 75s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 76s Preparing to unpack .../155-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 76s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 76s Selecting previously unselected package r-cran-shiny. 76s Preparing to unpack .../156-r-cran-shiny_1.8.1.1+dfsg-1_all.deb ... 76s Unpacking r-cran-shiny (1.8.1.1+dfsg-1) ... 76s Selecting previously unselected package r-cran-rmarkdown. 76s Preparing to unpack .../157-r-cran-rmarkdown_2.27+dfsg-1_all.deb ... 76s Unpacking r-cran-rmarkdown (2.27+dfsg-1) ... 76s Selecting previously unselected package r-cran-waldo. 76s Preparing to unpack .../158-r-cran-waldo_0.5.2-1build1_all.deb ... 76s Unpacking r-cran-waldo (0.5.2-1build1) ... 76s Selecting previously unselected package r-cran-testthat. 76s Preparing to unpack .../159-r-cran-testthat_3.2.1.1-1_amd64.deb ... 76s Unpacking r-cran-testthat (3.2.1.1-1) ... 76s Setting up libjs-json (0~20221030+~1.0.8-1) ... 76s Setting up javascript-common (11+nmu1) ... 76s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 76s Setting up libpixman-1-0:amd64 (0.42.2-1build1) ... 76s Setting up libsharpyuv0:amd64 (1.4.0-0.1) ... 76s Setting up libpaper1:amd64 (1.1.29build1) ... 76s 76s Creating config file /etc/papersize with new version 76s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 76s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu2) ... 76s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 76s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 76s Setting up libdatrie1:amd64 (0.2.13-3build1) ... 76s Setting up libjs-popper.js (1.16.1+ds-6) ... 76s Setting up libxcb-render0:amd64 (1.17.0-2) ... 76s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 76s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 76s Setting up unzip (6.0-28ubuntu6) ... 76s Setting up x11-common (1:7.7+23ubuntu3) ... 76s Setting up node-html5shiv (3.7.3+dfsg-5) ... 76s Setting up libdeflate0:amd64 (1.21-1) ... 76s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 76s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 76s Setting up libpaper-utils (1.1.29build1) ... 76s Setting up libgomp1:amd64 (14.2.0-7ubuntu1) ... 76s Setting up libjs-modernizr (3.13.0-0.1) ... 76s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 76s Setting up libjs-es5-shim (4.6.7-2) ... 76s Setting up zip (3.0-14) ... 76s Setting up libblas3:amd64 (3.12.0-3build2) ... 76s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 76s Setting up libquadmath0:amd64 (14.2.0-7ubuntu1) ... 76s Setting up libjs-d3 (3.5.17-4) ... 76s Setting up fonts-dejavu-mono (2.37-8) ... 77s Setting up libmpc3:amd64 (1.3.1-1build2) ... 77s Setting up libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 77s Setting up fonts-dejavu-core (2.37-8) ... 77s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 77s Setting up libgfortran5:amd64 (14.2.0-7ubuntu1) ... 77s Setting up libwebp7:amd64 (1.4.0-0.1) ... 77s Setting up libubsan1:amd64 (14.2.0-7ubuntu1) ... 77s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 77s Setting up libhwasan0:amd64 (14.2.0-7ubuntu1) ... 77s Setting up libasan8:amd64 (14.2.0-7ubuntu1) ... 77s Setting up liblua5.4-0:amd64 (5.4.6-3build2) ... 77s Setting up libharfbuzz0b:amd64 (9.0.0-1) ... 77s Setting up libthai-data (0.1.29-2build1) ... 77s Setting up node-bootstrap-sass (3.4.3-2) ... 77s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 77s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 77s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 77s Setting up pandoc-data (3.1.11.1-3) ... 77s Setting up libtsan2:amd64 (14.2.0-7ubuntu1) ... 77s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 77s Setting up libisl23:amd64 (0.27-1) ... 77s Setting up node-normalize.css (8.0.1-5) ... 77s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 77s Setting up xdg-utils (1.2.1-0ubuntu1) ... 77s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 77s Setting up libcc1-0:amd64 (14.2.0-7ubuntu1) ... 77s Setting up liblsan0:amd64 (14.2.0-7ubuntu1) ... 77s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 77s Setting up libitm1:amd64 (14.2.0-7ubuntu1) ... 77s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 77s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 77s Setting up libice6:amd64 (2:1.0.10-1build3) ... 77s Setting up liblapack3:amd64 (3.12.0-3build2) ... 77s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 77s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 77s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 77s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 77s Setting up libthai0:amd64 (0.1.29-2build1) ... 77s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 77s Setting up pandoc (3.1.11.1+ds-2) ... 77s Setting up cpp-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 77s Setting up cpp-14 (14.2.0-7ubuntu1) ... 77s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 77s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 77s Setting up libgcc-14-dev:amd64 (14.2.0-7ubuntu1) ... 77s Setting up libstdc++-14-dev:amd64 (14.2.0-7ubuntu1) ... 77s Setting up libsm6:amd64 (2:1.2.3-1build3) ... 77s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 77s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 79s Regenerating fonts cache... done. 79s Setting up libxft2:amd64 (2.3.6-1build1) ... 79s Setting up libtk8.6:amd64 (8.6.14-1build1) ... 79s Setting up libpango-1.0-0:amd64 (1.54.0+ds-2) ... 79s Setting up libcairo2:amd64 (1.18.2-2) ... 79s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ... 79s Setting up cpp (4:14.1.0-2ubuntu1) ... 79s Setting up gcc-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 79s Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-2) ... 79s Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-2) ... 79s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 79s Setting up gcc-14 (14.2.0-7ubuntu1) ... 79s Setting up r-base-core (4.4.1-1) ... 79s 79s Creating config file /etc/R/Renviron with new version 79s Setting up r-cran-crayon (1.5.2-1) ... 79s Setting up r-cran-sourcetools (0.1.7-1-1) ... 79s Setting up r-cran-ps (1.7.6-1) ... 79s Setting up g++-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 79s Setting up r-cran-remotes (2.5.0+dfsg-1) ... 79s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 79s Setting up r-cran-commonmark (1.9.1-1) ... 79s Setting up g++-14 (14.2.0-7ubuntu1) ... 79s Setting up r-cran-r6 (2.5.1-1) ... 79s Setting up r-cran-pkgkitten (0.2.4-1) ... 79s Setting up r-cran-magrittr (2.0.3-1) ... 79s Setting up r-cran-rappdirs (0.3.3-1) ... 79s Setting up r-cran-littler (0.3.20-1) ... 79s Setting up r-cran-fs (1.6.4+dfsg-1) ... 79s Setting up r-cran-rcpp (1.0.13-1) ... 79s Setting up r-cran-curl (5.2.3+dfsg-1) ... 79s Setting up r-cran-brio (1.1.5-1) ... 79s Setting up r-cran-diffobj (0.3.5-1) ... 79s Setting up r-bioc-biocgenerics (0.50.0-2) ... 79s Setting up r-cran-rlang (1.1.4-1) ... 79s Setting up littler (0.3.20-1) ... 79s Setting up r-cran-xfun (0.45+dfsg-1) ... 79s Setting up r-cran-withr (3.0.0+dfsg-1) ... 79s Setting up r-cran-processx (3.8.4-1) ... 79s Setting up r-cran-mime (0.12-2) ... 79s Setting up r-cran-praise (1.0.0-4build1) ... 79s Setting up r-cran-base64enc (0.1-3-3) ... 79s Setting up r-cran-digest (0.6.36-1) ... 79s Setting up r-cran-yaml (2.3.8-2) ... 79s Setting up r-cran-evaluate (0.24.0-1) ... 79s Setting up r-cran-highr (0.11+dfsg-1) ... 79s Setting up r-cran-fansi (1.0.5-1) ... 79s Setting up r-cran-glue (1.7.0-1) ... 79s Setting up r-cran-xtable (1:1.8-4-2) ... 79s Setting up r-cran-cli (3.6.2-1) ... 79s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 79s Setting up r-bioc-biocversion (3.19.1-1) ... 79s Setting up r-cran-rprojroot (2.0.4-1) ... 79s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 79s Setting up gcc (4:14.1.0-2ubuntu1) ... 79s Setting up r-cran-fastmap (1.1.1-1) ... 79s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 79s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 79s Setting up r-cran-utf8 (1.2.4-1) ... 79s Setting up r-cran-later (1.3.2+dfsg-1) ... 79s Setting up r-cran-htmltools (0.5.8.1-1) ... 79s Setting up r-cran-tinytex (0.51-1) ... 79s Setting up r-cran-knitr (1.47+dfsg-1) ... 79s Setting up g++ (4:14.1.0-2ubuntu1) ... 79s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 79s Setting up r-cran-cachem (1.0.8-1) ... 79s Setting up r-cran-sass (0.4.9+dfsg-1) ... 79s Setting up build-essential (12.10ubuntu1) ... 79s Setting up r-cran-vctrs (0.6.5-1) ... 79s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 79s Setting up r-cran-callr (3.7.6-1) ... 79s Setting up r-cran-desc (1.4.3-1) ... 79s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 79s Setting up r-cran-fontawesome (0.5.2-1) ... 79s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 79s Setting up r-cran-memoise (2.0.1-1) ... 79s Setting up r-cran-promises (1.3.0+dfsg-1) ... 79s Setting up r-cran-pkgbuild (1.4.4-1) ... 79s Setting up r-cran-pkgload (1.4.0-1) ... 79s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 79s Setting up r-cran-rematch2 (2.1.2-2build1) ... 79s Setting up r-cran-bslib (0.7.0+dfsg-1) ... 79s Setting up r-cran-waldo (0.5.2-1build1) ... 79s Setting up r-cran-shiny (1.8.1.1+dfsg-1) ... 79s Setting up r-cran-testthat (3.2.1.1-1) ... 79s Setting up r-cran-rmarkdown (2.27+dfsg-1) ... 79s Processing triggers for libc-bin (2.40-1ubuntu3) ... 79s Processing triggers for man-db (2.12.1-3) ... 81s Processing triggers for install-info (7.1.1-1) ... 83s Reading package lists... 84s Building dependency tree... 84s Reading state information... 84s Starting pkgProblemResolver with broken count: 0 84s Starting 2 pkgProblemResolver with broken count: 0 84s Done 84s The following NEW packages will be installed: 84s autopkgtest-satdep 85s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 85s Need to get 0 B/700 B of archives. 85s After this operation, 0 B of additional disk space will be used. 85s Get:1 /tmp/autopkgtest.UoK8S7/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 85s Selecting previously unselected package autopkgtest-satdep. 85s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 92293 files and directories currently installed.) 85s Preparing to unpack .../2-autopkgtest-satdep.deb ... 85s Unpacking autopkgtest-satdep (0) ... 85s Setting up autopkgtest-satdep (0) ... 87s (Reading database ... 92293 files and directories currently installed.) 87s Removing autopkgtest-satdep (0) ... 87s autopkgtest [01:50:31]: test run-unit-test: [----------------------- 87s BEGIN TEST testthat.R 87s 87s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 87s Copyright (C) 2024 The R Foundation for Statistical Computing 87s Platform: x86_64-pc-linux-gnu 87s 87s R is free software and comes with ABSOLUTELY NO WARRANTY. 87s You are welcome to redistribute it under certain conditions. 87s Type 'license()' or 'licence()' for distribution details. 87s 87s R is a collaborative project with many contributors. 87s Type 'contributors()' for more information and 87s 'citation()' on how to cite R or R packages in publications. 87s 87s Type 'demo()' for some demos, 'help()' for on-line help, or 87s 'help.start()' for an HTML browser interface to help. 87s Type 'q()' to quit R. 87s 88s > library(testthat) 88s > library(BiocManager) 88s > 88s > test_check("BiocManager") 88s Bioconductor version '3.19' is out-of-date; the current release version '3.20' 88s is available with R version '4.4'; see https://bioconductor.org/install 91s [ FAIL 0 | WARN 53 | SKIP 26 | PASS 90 ] 91s 91s == Skipped tests (26) ========================================================== 91s * Fails with 'unwriteable packages are not considered' (1): 91s 'test_install.R:166:5' 91s * May be its forbidden to install something - at least this test fails and is 91s excluded hereby (1): 'test_install.R:348:5' 91s * On CRAN (23): 'test_install.R:27:5', 'test_install.R:45:5', 91s 'test_install.R:220:5', 'test_repositories.R:5:5', 91s 'test_repositories.R:14:5', 'test_repositories.R:20:5', 91s 'test_repositories.R:26:5', 'test_repositories.R:80:5', 91s 'test_repositories.R:90:5', 'test_repositories.R:164:5', 91s 'test_repositories.R:173:5', 'test_repositories.R:211:5', 91s 'test_version.R:17:5', 'test_version.R:39:5', 'test_version.R:92:5', 91s 'test_version.R:107:5', 'test_version.R:147:5', 'test_version.R:194:5', 91s 'test_version.R:235:5', 'test_version.R:246:5', 'test_version.R:277:5', 91s 'test_version.R:328:5', 'test_version.R:387:5' 91s * too idiosyncratic for standardized testing (1): 'test_install.R:180:5' 91s 91s [ FAIL 0 | WARN 53 | SKIP 26 | PASS 90 ] 91s > 91s autopkgtest [01:50:35]: test run-unit-test: -----------------------] 92s run-unit-test PASS 92s autopkgtest [01:50:36]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 92s autopkgtest [01:50:36]: test pkg-r-autopkgtest: preparing testbed 94s Note, using file '/tmp/autopkgtest.UoK8S7/3-autopkgtest-satdep.dsc' to get the build dependencies 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 95s Starting pkgProblemResolver with broken count: 0 95s Starting 2 pkgProblemResolver with broken count: 0 95s Done 95s The following NEW packages will be installed: 95s dctrl-tools gfortran gfortran-14 gfortran-14-x86-64-linux-gnu 95s gfortran-x86-64-linux-gnu icu-devtools libblas-dev libbz2-dev libdeflate-dev 95s libgfortran-14-dev libicu-dev libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev 95s liblapack-dev liblzma-dev libncurses-dev libpcre2-16-0 libpcre2-32-0 95s libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev 95s libtirpc-dev pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev zlib1g-dev 95s 0 upgraded, 30 newly installed, 0 to remove and 0 not upgraded. 95s Need to get 34.9 MB of archives. 95s After this operation, 132 MB of additional disk space will be used. 95s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 95s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran-14-dev amd64 14.2.0-7ubuntu1 [965 kB] 95s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-7ubuntu1 [12.6 MB] 95s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-14 amd64 14.2.0-7ubuntu1 [11.6 kB] 95s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1022 B] 95s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 gfortran amd64 4:14.1.0-2ubuntu1 [1172 B] 95s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 icu-devtools amd64 74.2-1ubuntu4 [213 kB] 95s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas-dev amd64 3.12.0-3build2 [172 kB] 95s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 95s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate-dev amd64 1.21-1 [56.9 kB] 95s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libicu-dev amd64 74.2-1ubuntu4 [11.9 MB] 95s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu2 [295 kB] 95s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 95s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 95s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack-dev amd64 3.12.0-3build2 [5249 kB] 95s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libncurses-dev amd64 6.5-2 [384 kB] 95s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu3 [214 kB] 95s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu3 [201 kB] 95s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu3 [6768 B] 95s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcre2-dev amd64 10.42-4ubuntu3 [747 kB] 95s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libpkgconf3 amd64 1.8.1-3ubuntu1 [31.0 kB] 95s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 95s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libpng-dev amd64 1.6.44-1 [266 kB] 95s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libreadline-dev amd64 8.2-5 [169 kB] 95s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 liblzma-dev amd64 5.6.2-2 [176 kB] 95s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf-bin amd64 1.8.1-3ubuntu1 [21.2 kB] 95s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 pkgconf amd64 1.8.1-3ubuntu1 [16.8 kB] 95s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 95s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-dev all 4.4.1-1 [4338 B] 95s Get:30 http://ftpmaster.internal/ubuntu plucky/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 96s Fetched 34.9 MB in 0s (89.0 MB/s) 96s Selecting previously unselected package dctrl-tools. 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 92293 files and directories currently installed.) 96s Preparing to unpack .../00-dctrl-tools_2.24-3build3_amd64.deb ... 96s Unpacking dctrl-tools (2.24-3build3) ... 96s Selecting previously unselected package libgfortran-14-dev:amd64. 96s Preparing to unpack .../01-libgfortran-14-dev_14.2.0-7ubuntu1_amd64.deb ... 96s Unpacking libgfortran-14-dev:amd64 (14.2.0-7ubuntu1) ... 96s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 96s Preparing to unpack .../02-gfortran-14-x86-64-linux-gnu_14.2.0-7ubuntu1_amd64.deb ... 96s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 96s Selecting previously unselected package gfortran-14. 96s Preparing to unpack .../03-gfortran-14_14.2.0-7ubuntu1_amd64.deb ... 96s Unpacking gfortran-14 (14.2.0-7ubuntu1) ... 96s Selecting previously unselected package gfortran-x86-64-linux-gnu. 96s Preparing to unpack .../04-gfortran-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 96s Unpacking gfortran-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 96s Selecting previously unselected package gfortran. 96s Preparing to unpack .../05-gfortran_4%3a14.1.0-2ubuntu1_amd64.deb ... 96s Unpacking gfortran (4:14.1.0-2ubuntu1) ... 96s Selecting previously unselected package icu-devtools. 96s Preparing to unpack .../06-icu-devtools_74.2-1ubuntu4_amd64.deb ... 96s Unpacking icu-devtools (74.2-1ubuntu4) ... 96s Selecting previously unselected package libblas-dev:amd64. 96s Preparing to unpack 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libjpeg8-dev:amd64 (8c-2ubuntu11) ... 97s Selecting previously unselected package libjpeg-dev:amd64. 97s Preparing to unpack .../13-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 97s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 97s Selecting previously unselected package liblapack-dev:amd64. 97s Preparing to unpack .../14-liblapack-dev_3.12.0-3build2_amd64.deb ... 97s Unpacking liblapack-dev:amd64 (3.12.0-3build2) ... 97s Selecting previously unselected package libncurses-dev:amd64. 97s Preparing to unpack .../15-libncurses-dev_6.5-2_amd64.deb ... 97s Unpacking libncurses-dev:amd64 (6.5-2) ... 97s Selecting previously unselected package libpcre2-16-0:amd64. 97s Preparing to unpack .../16-libpcre2-16-0_10.42-4ubuntu3_amd64.deb ... 97s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu3) ... 97s Selecting previously unselected package libpcre2-32-0:amd64. 97s Preparing to unpack .../17-libpcre2-32-0_10.42-4ubuntu3_amd64.deb ... 97s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu3) ... 97s Selecting previously unselected package libpcre2-posix3:amd64. 97s Preparing to unpack .../18-libpcre2-posix3_10.42-4ubuntu3_amd64.deb ... 97s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu3) ... 97s Selecting previously unselected package libpcre2-dev:amd64. 97s Preparing to unpack .../19-libpcre2-dev_10.42-4ubuntu3_amd64.deb ... 97s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu3) ... 97s Selecting previously unselected package libpkgconf3:amd64. 97s Preparing to unpack .../20-libpkgconf3_1.8.1-3ubuntu1_amd64.deb ... 97s Unpacking libpkgconf3:amd64 (1.8.1-3ubuntu1) ... 97s Selecting previously unselected package zlib1g-dev:amd64. 97s Preparing to unpack .../21-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 97s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 97s Selecting previously unselected package libpng-dev:amd64. 97s Preparing to unpack .../22-libpng-dev_1.6.44-1_amd64.deb ... 97s Unpacking libpng-dev:amd64 (1.6.44-1) ... 97s Selecting previously unselected package libreadline-dev:amd64. 97s Preparing to unpack .../23-libreadline-dev_8.2-5_amd64.deb ... 97s Unpacking libreadline-dev:amd64 (8.2-5) ... 97s Selecting previously unselected package liblzma-dev:amd64. 97s Preparing to unpack .../24-liblzma-dev_5.6.2-2_amd64.deb ... 97s Unpacking liblzma-dev:amd64 (5.6.2-2) ... 97s Selecting previously unselected package pkgconf-bin. 97s Preparing to unpack .../25-pkgconf-bin_1.8.1-3ubuntu1_amd64.deb ... 97s Unpacking pkgconf-bin (1.8.1-3ubuntu1) ... 97s Selecting previously unselected package pkgconf:amd64. 97s Preparing to unpack .../26-pkgconf_1.8.1-3ubuntu1_amd64.deb ... 97s Unpacking pkgconf:amd64 (1.8.1-3ubuntu1) ... 97s Selecting previously unselected package libtirpc-dev:amd64. 97s Preparing to unpack .../27-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 97s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 97s Selecting previously unselected package r-base-dev. 97s Preparing to unpack .../28-r-base-dev_4.4.1-1_all.deb ... 97s Unpacking r-base-dev (4.4.1-1) ... 97s Selecting previously unselected package pkg-r-autopkgtest. 97s Preparing to unpack .../29-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 97s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 97s Setting up libgfortran-14-dev:amd64 (14.2.0-7ubuntu1) ... 97s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu2) ... 97s Setting up libncurses-dev:amd64 (6.5-2) ... 97s Setting up libreadline-dev:amd64 (8.2-5) ... 97s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu3) ... 97s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-7ubuntu1) ... 97s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu3) ... 97s Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 97s Setting up libpkgconf3:amd64 (1.8.1-3ubuntu1) ... 97s Setting up icu-devtools (74.2-1ubuntu4) ... 97s Setting up pkgconf-bin (1.8.1-3ubuntu1) ... 97s Setting up liblzma-dev:amd64 (5.6.2-2) ... 97s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 97s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu3) ... 97s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 97s Setting up gfortran-14 (14.2.0-7ubuntu1) ... 97s Setting up libdeflate-dev:amd64 (1.21-1) ... 97s Setting up libicu-dev:amd64 (74.2-1ubuntu4) ... 97s Setting up libblas-dev:amd64 (3.12.0-3build2) ... 97s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 97s Setting up dctrl-tools (2.24-3build3) ... 97s Setting up libbz2-dev:amd64 (1.0.8-6) ... 97s Setting up libpcre2-dev:amd64 (10.42-4ubuntu3) ... 97s Setting up libpng-dev:amd64 (1.6.44-1) ... 97s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 97s Setting up gfortran-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 97s Setting up gfortran (4:14.1.0-2ubuntu1) ... 97s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 97s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 97s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 97s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 97s Setting up pkgconf:amd64 (1.8.1-3ubuntu1) ... 97s Setting up liblapack-dev:amd64 (3.12.0-3build2) ... 97s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 97s Setting up r-base-dev (4.4.1-1) ... 97s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 97s Processing triggers for libc-bin (2.40-1ubuntu3) ... 97s Processing triggers for man-db (2.12.1-3) ... 98s Processing triggers for install-info (7.1.1-1) ... 102s Reading package lists... 102s Building dependency tree... 102s Reading state information... 102s Starting pkgProblemResolver with broken count: 0 102s Starting 2 pkgProblemResolver with broken count: 0 102s Done 103s The following NEW packages will be installed: 103s autopkgtest-satdep 103s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 103s Need to get 0 B/700 B of archives. 103s After this operation, 0 B of additional disk space will be used. 103s Get:1 /tmp/autopkgtest.UoK8S7/4-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 103s Selecting previously unselected package autopkgtest-satdep. 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 93128 files and directories currently installed.) 103s Preparing to unpack .../4-autopkgtest-satdep.deb ... 103s Unpacking autopkgtest-satdep (0) ... 103s Setting up autopkgtest-satdep (0) ... 105s (Reading database ... 93128 files and directories currently installed.) 105s Removing autopkgtest-satdep (0) ... 105s autopkgtest [01:50:49]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 105s autopkgtest [01:50:49]: test pkg-r-autopkgtest: [----------------------- 105s Test: Try to load the R library BiocManager 105s 105s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 105s Copyright (C) 2024 The R Foundation for Statistical Computing 105s Platform: x86_64-pc-linux-gnu 105s 105s R is free software and comes with ABSOLUTELY NO WARRANTY. 105s You are welcome to redistribute it under certain conditions. 105s Type 'license()' or 'licence()' for distribution details. 105s 105s R is a collaborative project with many contributors. 105s Type 'contributors()' for more information and 105s 'citation()' on how to cite R or R packages in publications. 105s 105s Type 'demo()' for some demos, 'help()' for on-line help, or 105s 'help.start()' for an HTML browser interface to help. 105s Type 'q()' to quit R. 105s 105s > library('BiocManager') 106s Bioconductor version '3.19' is out-of-date; the current release version '3.20' 106s is available with R version '4.4'; see https://bioconductor.org/install 106s > 106s > 106s Other tests are currently unsupported! 106s They will be progressively added. 106s autopkgtest [01:50:50]: test pkg-r-autopkgtest: -----------------------] 106s pkg-r-autopkgtest PASS 106s autopkgtest [01:50:50]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 106s autopkgtest [01:50:50]: @@@@@@@@@@@@@@@@@@@@ summary 106s run-unit-test PASS 106s pkg-r-autopkgtest PASS 117s nova [W] Skipping flock for amd64 117s Creating nova instance adt-plucky-i386-r-cran-biocmanager-20241102-012332-juju-7f2275-prod-proposed-migration-environment-15-bacae040-7b1e-41da-b12a-849d1c17995f from image adt/ubuntu-plucky-amd64-server-20241102.img (UUID 640916e2-9412-4fa2-8155-f822a4055b51)...