0s autopkgtest [05:30:17]: starting date and time: 2024-11-15 05:30:17+0000 0s autopkgtest [05:30:17]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [05:30:17]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.fdcksecp/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-weblogo --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-18.secgroup --name adt-plucky-i386-python-weblogo-20241115-053017-juju-7f2275-prod-proposed-migration-environment-20-70626a5b-6ea0-48ee-8c29-c24f4e04d717 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 40s autopkgtest [05:30:57]: testbed dpkg architecture: amd64 40s autopkgtest [05:30:57]: testbed apt version: 2.9.8 40s autopkgtest [05:30:57]: test architecture: i386 40s autopkgtest [05:30:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 41s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 42s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1055 kB] 42s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [97.2 kB] 42s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 42s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 42s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [131 kB] 42s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [198 kB] 42s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 42s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [299 kB] 42s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [818 kB] 42s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 42s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9128 B] 42s Fetched 2737 kB in 1s (3493 kB/s) 42s Reading package lists... 44s Reading package lists... 44s Building dependency tree... 44s Reading state information... 45s Calculating upgrade... 45s The following NEW packages will be installed: 45s python3.13-gdbm 45s The following packages will be upgraded: 45s firmware-sof-signed grub-common grub-pc grub-pc-bin grub2-common libcap-ng0 45s libexpat1 libpython3-stdlib lxd-installer man-db pastebinit python3 45s python3-gdbm python3-minimal python3-systemd xfsprogs 45s 16 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 45s Need to get 13.7 MB of archives. 45s After this operation, 578 kB of additional disk space will be used. 45s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 45s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 45s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 45s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 firmware-sof-signed all 2024.06-1ubuntu2 [7083 kB] 45s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-3build1 [15.6 kB] 45s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1 amd64 2.6.4-1 [94.9 kB] 45s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 man-db amd64 2.13.0-1 [1352 kB] 46s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 46s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 46s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 grub2-common amd64 2.12-5ubuntu7 [672 kB] 46s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-pc amd64 2.12-5ubuntu7 [137 kB] 46s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-pc-bin amd64 2.12-5ubuntu7 [1127 kB] 46s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 grub-common amd64 2.12-5ubuntu7 [2110 kB] 46s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 lxd-installer all 9 [5084 B] 46s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 46s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build5 [45.7 kB] 46s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 xfsprogs amd64 6.8.0-2.2ubuntu2 [926 kB] 46s Preconfiguring packages ... 46s Fetched 13.7 MB in 1s (14.5 MB/s) 46s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 46s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 46s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 46s Setting up python3-minimal (3.12.7-1) ... 46s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 46s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 46s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 46s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 46s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 46s Preparing to unpack .../firmware-sof-signed_2024.06-1ubuntu2_all.deb ... 46s Unpacking firmware-sof-signed (2024.06-1ubuntu2) over (2024.06-1ubuntu1) ... 47s Preparing to unpack .../libcap-ng0_0.8.5-3build1_amd64.deb ... 47s Unpacking libcap-ng0:amd64 (0.8.5-3build1) over (0.8.5-1) ... 47s Setting up libcap-ng0:amd64 (0.8.5-3build1) ... 47s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75568 files and directories currently installed.) 47s Preparing to unpack .../00-libexpat1_2.6.4-1_amd64.deb ... 47s Unpacking libexpat1:amd64 (2.6.4-1) over (2.6.2-2) ... 47s Preparing to unpack .../01-man-db_2.13.0-1_amd64.deb ... 47s Unpacking man-db (2.13.0-1) over (2.12.1-3) ... 47s Selecting previously unselected package python3.13-gdbm. 47s Preparing to unpack .../02-python3.13-gdbm_3.13.0-2_amd64.deb ... 47s Unpacking python3.13-gdbm (3.13.0-2) ... 47s Preparing to unpack .../03-python3-gdbm_3.12.7-1_amd64.deb ... 47s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 47s Preparing to unpack .../04-grub2-common_2.12-5ubuntu7_amd64.deb ... 47s Unpacking grub2-common (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 47s Preparing to unpack .../05-grub-pc_2.12-5ubuntu7_amd64.deb ... 47s Unpacking grub-pc (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 47s Preparing to unpack .../06-grub-pc-bin_2.12-5ubuntu7_amd64.deb ... 47s Unpacking grub-pc-bin (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 47s Preparing to unpack .../07-grub-common_2.12-5ubuntu7_amd64.deb ... 47s Unpacking grub-common (2.12-5ubuntu7) over (2.12-5ubuntu5.1) ... 47s Preparing to unpack .../08-lxd-installer_9_all.deb ... 47s Unpacking lxd-installer (9) over (8) ... 47s Preparing to unpack .../09-pastebinit_1.7.1-1_all.deb ... 47s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 47s Preparing to unpack .../10-python3-systemd_235-1build5_amd64.deb ... 47s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 48s Preparing to unpack .../11-xfsprogs_6.8.0-2.2ubuntu2_amd64.deb ... 48s Unpacking xfsprogs (6.8.0-2.2ubuntu2) over (6.8.0-2.2ubuntu1) ... 48s Setting up libexpat1:amd64 (2.6.4-1) ... 48s Setting up firmware-sof-signed (2024.06-1ubuntu2) ... 48s Setting up man-db (2.13.0-1) ... 48s Updating database of manual pages ... 50s man-db.service is a disabled or a static unit not running, not starting it. 50s Setting up lxd-installer (9) ... 50s Setting up python3.13-gdbm (3.13.0-2) ... 50s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 50s Setting up python3 (3.12.7-1) ... 50s Setting up grub-common (2.12-5ubuntu7) ... 50s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 51s Setting up xfsprogs (6.8.0-2.2ubuntu2) ... 51s update-initramfs: deferring update (trigger activated) 51s Setting up python3-systemd (235-1build5) ... 51s Setting up python3-gdbm:amd64 (3.12.7-1) ... 51s Setting up grub2-common (2.12-5ubuntu7) ... 51s Setting up pastebinit (1.7.1-1) ... 51s Setting up grub-pc-bin (2.12-5ubuntu7) ... 51s Setting up grub-pc (2.12-5ubuntu7) ... 52s Installing for i386-pc platform. 52s Installation finished. No error reported. 52s Sourcing file `/etc/default/grub' 52s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 52s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 52s Generating grub configuration file ... 52s Found linux image: /boot/vmlinuz-6.11.0-8-generic 52s Found initrd image: /boot/initrd.img-6.11.0-8-generic 53s Warning: os-prober will not be executed to detect other bootable partitions. 53s Systems on them will not be added to the GRUB boot configuration. 53s Check GRUB_DISABLE_OS_PROBER documentation entry. 53s Adding boot menu entry for UEFI Firmware Settings ... 53s done 53s Processing triggers for libc-bin (2.40-1ubuntu3) ... 53s Processing triggers for install-info (7.1.1-1) ... 53s Processing triggers for initramfs-tools (0.142ubuntu34) ... 53s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 53s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 61s Reading package lists... 61s Building dependency tree... 61s Reading state information... 61s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 62s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 62s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 62s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 62s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 63s Reading package lists... 63s Reading package lists... 63s Building dependency tree... 63s Reading state information... 63s Calculating upgrade... 63s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 63s Reading package lists... 64s Building dependency tree... 64s Reading state information... 64s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 64s autopkgtest [05:31:21]: rebooting testbed after setup commands that affected boot 81s autopkgtest [05:31:38]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 83s autopkgtest [05:31:40]: @@@@@@@@@@@@@@@@@@@@ apt-source python-weblogo 85s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-weblogo 3.8.0-1 (dsc) [2220 B] 85s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-weblogo 3.8.0-1 (tar) [935 kB] 85s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-weblogo 3.8.0-1 (diff) [8344 B] 86s gpgv: Signature made Mon Oct 7 06:39:27 2024 UTC 86s gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 86s gpgv: issuer "merkys@debian.org" 86s gpgv: Can't check signature: No public key 86s dpkg-source: warning: cannot verify inline signature for ./python-weblogo_3.8.0-1.dsc: no acceptable signature found 86s autopkgtest [05:31:43]: testing package python-weblogo version 3.8.0-1 86s autopkgtest [05:31:43]: build not needed 87s autopkgtest [05:31:44]: test pybuild-autopkgtest: preparing testbed 89s Note, using file '/tmp/autopkgtest.XI7FWJ/1-autopkgtest-satdep.dsc' to get the build dependencies 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 89s Starting pkgProblemResolver with broken count: 0 89s Starting 2 pkgProblemResolver with broken count: 0 89s Done 90s The following NEW packages will be installed: 90s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 90s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu debhelper debugedit 90s dh-autoreconf dh-python dh-strip-nondeterminism dwz fontconfig-config 90s fonts-glyphicons-halflings fonts-urw-base35 g++ g++-14 90s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 90s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext ghostscript help2man 90s intltool-debian libarchive-zip-perl libasan8 libavahi-client3 90s libavahi-common-data libavahi-common3 libblas3 libcc1-0 libcups2t64 90s libdebhelper-perl libdeflate0 libexpat1-dev libfile-stripnondeterminism-perl 90s libfontconfig1 libfontenc1 libgcc-14-dev libgfortran5 libgomp1 libgs-common 90s libgs10 libgs10-common libhwasan0 libice6 libidn12 libijs-0.35 libisl23 90s libitm1 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libjs-bootstrap 90s libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblerc4 90s liblsan0 libmpc3 libopenjp2-7 libpaper1 libpython3-all-dev libpython3-dev 90s libpython3.12-dev libpython3.13 libpython3.13-dev libpython3.13-minimal 90s libpython3.13-stdlib libquadmath0 libsharpyuv0 libsm6 libstdc++-14-dev 90s libtiff6 libtool libtsan2 libubsan1 libwebp7 libxt6t64 m4 po-debconf 90s poppler-data pybuild-plugin-autopkgtest python3-all python3-all-dev 90s python3-decorator python3-dev python3-iniconfig python3-numpy 90s python3-packaging python3-pluggy python3-pytest python3-scipy 90s python3-setuptools-scm python3-weblogo python3.12-dev python3.13 90s python3.13-dev python3.13-minimal x11-common xfonts-encodings xfonts-utils 90s zlib1g-dev 90s 0 upgraded, 112 newly installed, 0 to remove and 0 not upgraded. 90s Need to get 141 MB of archives. 90s After this operation, 506 MB of additional disk space will be used. 90s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 poppler-data all 0.4.12-1 [2060 kB] 91s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 91s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 91s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB] 91s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB] 91s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 91s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 91s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-2 [616 kB] 91s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 91s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 91s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 92s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 92s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 92s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 92s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 92s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 92s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 92s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 92s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 92s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 92s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 92s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 92s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 92s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 93s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 93s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 93s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 93s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 93s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 93s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 94s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 94s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 94s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 94s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 94s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 94s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.4.7-7build1 [166 kB] 94s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 94s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 94s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 94s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 94s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB] 94s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 94s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-2 [948 kB] 94s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 94s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 94s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB] 94s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20241024 [112 kB] 94s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB] 94s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 94s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 94s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB] 94s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB] 94s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 94s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 94s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libgs-common all 10.03.1~dfsg1-0ubuntu3 [175 kB] 94s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libgs10-common all 10.03.1~dfsg1-0ubuntu3 [488 kB] 94s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-common-data amd64 0.8-13ubuntu6 [29.7 kB] 94s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-common3 amd64 0.8-13ubuntu6 [23.3 kB] 94s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libavahi-client3 amd64 0.8-13ubuntu6 [26.8 kB] 94s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libcups2t64 amd64 2.4.10-1ubuntu2 [271 kB] 94s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 94s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libidn12 amd64 1.42-2 [55.9 kB] 94s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libijs-0.35 amd64 0.35-15.1build1 [15.3 kB] 94s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig2dec0 amd64 0.20-1build3 [65.0 kB] 94s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 94s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 94s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 94s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper1 amd64 1.1.29build1 [13.4 kB] 94s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 94s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 94s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 94s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 94s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 94s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 94s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 94s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 94s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 94s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libgs10 amd64 10.03.1~dfsg1-0ubuntu3 [4579 kB] 94s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 ghostscript amd64 10.03.1~dfsg1-0ubuntu3 [43.5 kB] 94s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 help2man amd64 1.49.3 [201 kB] 94s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 94s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1-dev amd64 2.6.4-1 [148 kB] 94s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 95s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 95s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 95s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 95s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 95s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 95s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 95s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 95s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.12-dev amd64 3.12.7-3 [5699 kB] 95s Get:92 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-dev amd64 3.12.7-1 [10.3 kB] 95s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 95s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13 amd64 3.13.0-2 [2321 kB] 95s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-dev amd64 3.13.0-2 [5488 kB] 95s Get:96 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-all-dev amd64 3.12.7-1 [916 B] 95s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 95s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 95s Get:99 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 95s Get:100 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-dev amd64 3.12.7-3 [505 kB] 95s Get:101 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-dev amd64 3.12.7-1 [26.7 kB] 95s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-dev amd64 3.13.0-2 [507 kB] 96s Get:103 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all-dev amd64 3.12.7-1 [914 B] 96s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 96s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 96s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 96s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 96s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 96s Get:109 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 96s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-setuptools-scm all 8.1.0-1 [32.2 kB] 96s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 97s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-weblogo all 3.8.0-1 [116 kB] 98s Preconfiguring packages ... 98s Fetched 141 MB in 8s (18.3 MB/s) 98s Selecting previously unselected package poppler-data. 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75582 files and directories currently installed.) 98s Preparing to unpack .../000-poppler-data_0.4.12-1_all.deb ... 98s Unpacking poppler-data (0.4.12-1) ... 98s Selecting previously unselected package libpython3.13-minimal:amd64. 98s Preparing to unpack .../001-libpython3.13-minimal_3.13.0-2_amd64.deb ... 98s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 98s Selecting previously unselected package python3.13-minimal. 98s Preparing to unpack .../002-python3.13-minimal_3.13.0-2_amd64.deb ... 98s Unpacking python3.13-minimal (3.13.0-2) ... 98s Selecting previously unselected package m4. 98s Preparing to unpack .../003-m4_1.4.19-4build1_amd64.deb ... 98s Unpacking m4 (1.4.19-4build1) ... 98s Selecting previously unselected package autoconf. 98s Preparing to unpack .../004-autoconf_2.72-3_all.deb ... 98s Unpacking autoconf (2.72-3) ... 98s Selecting previously unselected package autotools-dev. 98s Preparing to unpack .../005-autotools-dev_20220109.1_all.deb ... 98s Unpacking autotools-dev (20220109.1) ... 98s Selecting previously unselected package automake. 98s Preparing to unpack .../006-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 98s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 98s Selecting previously unselected package autopoint. 98s Preparing to unpack .../007-autopoint_0.22.5-2_all.deb ... 98s Unpacking autopoint (0.22.5-2) ... 98s Selecting previously unselected package libisl23:amd64. 98s Preparing to unpack .../008-libisl23_0.27-1_amd64.deb ... 98s Unpacking libisl23:amd64 (0.27-1) ... 98s Selecting previously unselected package libmpc3:amd64. 98s Preparing to unpack .../009-libmpc3_1.3.1-1build2_amd64.deb ... 98s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 98s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 98s Preparing to unpack .../010-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 98s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package cpp-14. 99s Preparing to unpack .../011-cpp-14_14.2.0-8ubuntu1_amd64.deb ... 99s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package cpp-x86-64-linux-gnu. 99s Preparing to unpack .../012-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 99s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 99s Selecting previously unselected package cpp. 99s Preparing to unpack .../013-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 99s Unpacking cpp (4:14.1.0-2ubuntu1) ... 99s Selecting previously unselected package libcc1-0:amd64. 99s Preparing to unpack .../014-libcc1-0_14.2.0-8ubuntu1_amd64.deb ... 99s Unpacking libcc1-0:amd64 (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package libgomp1:amd64. 99s Preparing to unpack .../015-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 99s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package libitm1:amd64. 99s Preparing to unpack .../016-libitm1_14.2.0-8ubuntu1_amd64.deb ... 99s Unpacking libitm1:amd64 (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package libasan8:amd64. 99s Preparing to unpack .../017-libasan8_14.2.0-8ubuntu1_amd64.deb ... 99s Unpacking libasan8:amd64 (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package liblsan0:amd64. 99s Preparing to unpack .../018-liblsan0_14.2.0-8ubuntu1_amd64.deb ... 99s Unpacking liblsan0:amd64 (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package libtsan2:amd64. 99s Preparing to unpack .../019-libtsan2_14.2.0-8ubuntu1_amd64.deb ... 99s Unpacking libtsan2:amd64 (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package libubsan1:amd64. 99s Preparing to unpack .../020-libubsan1_14.2.0-8ubuntu1_amd64.deb ... 99s Unpacking libubsan1:amd64 (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package libhwasan0:amd64. 99s Preparing to unpack .../021-libhwasan0_14.2.0-8ubuntu1_amd64.deb ... 99s Unpacking libhwasan0:amd64 (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package libquadmath0:amd64. 99s Preparing to unpack .../022-libquadmath0_14.2.0-8ubuntu1_amd64.deb ... 99s Unpacking libquadmath0:amd64 (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package libgcc-14-dev:amd64. 99s Preparing to unpack .../023-libgcc-14-dev_14.2.0-8ubuntu1_amd64.deb ... 99s Unpacking libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 99s Preparing to unpack .../024-gcc-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 99s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package gcc-14. 99s Preparing to unpack .../025-gcc-14_14.2.0-8ubuntu1_amd64.deb ... 99s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 99s Selecting previously unselected package gcc-x86-64-linux-gnu. 99s Preparing to unpack .../026-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 99s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 99s Selecting previously unselected package gcc. 99s Preparing to unpack .../027-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 99s Unpacking gcc (4:14.1.0-2ubuntu1) ... 100s Selecting previously unselected package libstdc++-14-dev:amd64. 100s Preparing to unpack .../028-libstdc++-14-dev_14.2.0-8ubuntu1_amd64.deb ... 100s Unpacking libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 100s Selecting previously unselected package g++-14-x86-64-linux-gnu. 100s Preparing to unpack .../029-g++-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 100s Unpacking g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 100s Selecting previously unselected package g++-14. 100s Preparing to unpack .../030-g++-14_14.2.0-8ubuntu1_amd64.deb ... 100s Unpacking g++-14 (14.2.0-8ubuntu1) ... 100s Selecting previously unselected package g++-x86-64-linux-gnu. 100s Preparing to unpack .../031-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 100s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 100s Selecting previously unselected package g++. 100s Preparing to unpack .../032-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 100s Unpacking g++ (4:14.1.0-2ubuntu1) ... 100s Selecting previously unselected package build-essential. 100s Preparing to unpack .../033-build-essential_12.10ubuntu1_amd64.deb ... 100s Unpacking build-essential (12.10ubuntu1) ... 100s Selecting previously unselected package libdebhelper-perl. 100s Preparing to unpack .../034-libdebhelper-perl_13.20ubuntu1_all.deb ... 100s Unpacking libdebhelper-perl (13.20ubuntu1) ... 100s Selecting previously unselected package libtool. 100s Preparing to unpack .../035-libtool_2.4.7-7build1_all.deb ... 100s Unpacking libtool (2.4.7-7build1) ... 100s Selecting previously unselected package dh-autoreconf. 100s Preparing to unpack .../036-dh-autoreconf_20_all.deb ... 100s Unpacking dh-autoreconf (20) ... 100s Selecting previously unselected package libarchive-zip-perl. 100s Preparing to unpack .../037-libarchive-zip-perl_1.68-1_all.deb ... 100s Unpacking libarchive-zip-perl (1.68-1) ... 100s Selecting previously unselected package libfile-stripnondeterminism-perl. 100s Preparing to unpack .../038-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 100s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 100s Selecting previously unselected package dh-strip-nondeterminism. 100s Preparing to unpack .../039-dh-strip-nondeterminism_1.14.0-1_all.deb ... 100s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 100s Selecting previously unselected package debugedit. 100s Preparing to unpack .../040-debugedit_1%3a5.1-1_amd64.deb ... 100s Unpacking debugedit (1:5.1-1) ... 100s Selecting previously unselected package dwz. 100s Preparing to unpack .../041-dwz_0.15-1build6_amd64.deb ... 100s Unpacking dwz (0.15-1build6) ... 100s Selecting previously unselected package gettext. 100s Preparing to unpack .../042-gettext_0.22.5-2_amd64.deb ... 100s Unpacking gettext (0.22.5-2) ... 100s Selecting previously unselected package intltool-debian. 100s Preparing to unpack .../043-intltool-debian_0.35.0+20060710.6_all.deb ... 100s Unpacking intltool-debian (0.35.0+20060710.6) ... 100s Selecting previously unselected package po-debconf. 100s Preparing to unpack .../044-po-debconf_1.0.21+nmu1_all.deb ... 100s Unpacking po-debconf (1.0.21+nmu1) ... 100s Selecting previously unselected package debhelper. 100s Preparing to unpack .../045-debhelper_13.20ubuntu1_all.deb ... 100s Unpacking debhelper (13.20ubuntu1) ... 100s Selecting previously unselected package dh-python. 100s Preparing to unpack .../046-dh-python_6.20241024_all.deb ... 100s Unpacking dh-python (6.20241024) ... 100s Selecting previously unselected package libfontenc1:amd64. 100s Preparing to unpack .../047-libfontenc1_1%3a1.1.8-1build1_amd64.deb ... 100s Unpacking libfontenc1:amd64 (1:1.1.8-1build1) ... 100s Selecting previously unselected package x11-common. 100s Preparing to unpack .../048-x11-common_1%3a7.7+23ubuntu3_all.deb ... 100s Unpacking x11-common (1:7.7+23ubuntu3) ... 100s Selecting previously unselected package xfonts-encodings. 100s Preparing to unpack .../049-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 100s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 100s Selecting previously unselected package xfonts-utils. 100s Preparing to unpack .../050-xfonts-utils_1%3a7.7+7_amd64.deb ... 100s Unpacking xfonts-utils (1:7.7+7) ... 100s Selecting previously unselected package fonts-urw-base35. 100s Preparing to unpack .../051-fonts-urw-base35_20200910-8_all.deb ... 101s Unpacking fonts-urw-base35 (20200910-8) ... 101s Selecting previously unselected package fontconfig-config. 101s Preparing to unpack .../052-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 102s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 102s Selecting previously unselected package fonts-glyphicons-halflings. 102s Preparing to unpack .../053-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 102s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 102s Selecting previously unselected package libgs-common. 102s Preparing to unpack .../054-libgs-common_10.03.1~dfsg1-0ubuntu3_all.deb ... 102s Unpacking libgs-common (10.03.1~dfsg1-0ubuntu3) ... 102s Selecting previously unselected package libgs10-common. 102s Preparing to unpack .../055-libgs10-common_10.03.1~dfsg1-0ubuntu3_all.deb ... 102s Unpacking libgs10-common (10.03.1~dfsg1-0ubuntu3) ... 102s Selecting previously unselected package libavahi-common-data:amd64. 102s Preparing to unpack .../056-libavahi-common-data_0.8-13ubuntu6_amd64.deb ... 102s Unpacking libavahi-common-data:amd64 (0.8-13ubuntu6) ... 102s Selecting previously unselected package libavahi-common3:amd64. 102s Preparing to unpack .../057-libavahi-common3_0.8-13ubuntu6_amd64.deb ... 102s Unpacking libavahi-common3:amd64 (0.8-13ubuntu6) ... 102s Selecting previously unselected package libavahi-client3:amd64. 102s Preparing to unpack .../058-libavahi-client3_0.8-13ubuntu6_amd64.deb ... 102s Unpacking libavahi-client3:amd64 (0.8-13ubuntu6) ... 102s Selecting previously unselected package libcups2t64:amd64. 102s Preparing to unpack .../059-libcups2t64_2.4.10-1ubuntu2_amd64.deb ... 102s Unpacking libcups2t64:amd64 (2.4.10-1ubuntu2) ... 102s Selecting previously unselected package libfontconfig1:amd64. 102s Preparing to unpack .../060-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 102s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 102s Selecting previously unselected package libidn12:amd64. 102s Preparing to unpack .../061-libidn12_1.42-2_amd64.deb ... 102s Unpacking libidn12:amd64 (1.42-2) ... 102s Selecting previously unselected package libijs-0.35:amd64. 102s Preparing to unpack .../062-libijs-0.35_0.35-15.1build1_amd64.deb ... 102s Unpacking libijs-0.35:amd64 (0.35-15.1build1) ... 102s Selecting previously unselected package libjbig2dec0:amd64. 102s Preparing to unpack .../063-libjbig2dec0_0.20-1build3_amd64.deb ... 102s Unpacking libjbig2dec0:amd64 (0.20-1build3) ... 102s Selecting previously unselected package libjpeg-turbo8:amd64. 102s Preparing to unpack .../064-libjpeg-turbo8_2.1.5-2ubuntu2_amd64.deb ... 102s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 102s Selecting previously unselected package libjpeg8:amd64. 102s Preparing to unpack .../065-libjpeg8_8c-2ubuntu11_amd64.deb ... 102s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 102s Selecting previously unselected package libopenjp2-7:amd64. 102s Preparing to 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libgs10:amd64. 102s Preparing to unpack .../077-libgs10_10.03.1~dfsg1-0ubuntu3_amd64.deb ... 102s Unpacking libgs10:amd64 (10.03.1~dfsg1-0ubuntu3) ... 102s Selecting previously unselected package ghostscript. 102s Preparing to unpack .../078-ghostscript_10.03.1~dfsg1-0ubuntu3_amd64.deb ... 102s Unpacking ghostscript (10.03.1~dfsg1-0ubuntu3) ... 102s Selecting previously unselected package help2man. 102s Preparing to unpack .../079-help2man_1.49.3_amd64.deb ... 102s Unpacking help2man (1.49.3) ... 102s Selecting previously unselected package libblas3:amd64. 102s Preparing to unpack .../080-libblas3_3.12.0-3build2_amd64.deb ... 102s Unpacking libblas3:amd64 (3.12.0-3build2) ... 102s Selecting previously unselected package libexpat1-dev:amd64. 102s Preparing to unpack .../081-libexpat1-dev_2.6.4-1_amd64.deb ... 102s Unpacking libexpat1-dev:amd64 (2.6.4-1) ... 102s Selecting previously unselected package libgfortran5:amd64. 102s Preparing to unpack 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update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 105s Setting up gettext (0.22.5-2) ... 105s Setting up python3.13 (3.13.0-2) ... 106s Setting up python3-pytest (8.3.3-1) ... 107s Setting up libavahi-common3:amd64 (0.8-13ubuntu6) ... 107s Setting up python3-all (3.12.7-1) ... 107s Setting up libpython3.12-dev:amd64 (3.12.7-3) ... 107s Setting up xfonts-utils (1:7.7+7) ... 107s Setting up python3-setuptools-scm (8.1.0-1) ... 107s Setting up intltool-debian (0.35.0+20060710.6) ... 107s Setting up libpython3.13-dev:amd64 (3.13.0-2) ... 107s Setting up python3.12-dev (3.12.7-3) ... 107s Setting up cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 107s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 110s Setting up libjs-sphinxdoc (7.4.7-4) ... 110s Setting up cpp-14 (14.2.0-8ubuntu1) ... 110s Setting up dh-strip-nondeterminism (1.14.0-1) ... 110s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 110s Setting up libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 110s Setting up libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 110s Setting up libsm6:amd64 (2:1.2.4-1) ... 110s Setting up libavahi-client3:amd64 (0.8-13ubuntu6) ... 110s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 110s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 110s Setting up python3-scipy (1.13.1-5) ... 114s Setting up libpython3-dev:amd64 (3.12.7-1) ... 114s Setting up python3.13-dev (3.13.0-2) ... 114s Setting up po-debconf (1.0.21+nmu1) ... 114s Setting up fonts-urw-base35 (20200910-8) ... 115s Setting up libpython3-all-dev:amd64 (3.12.7-1) ... 115s Setting up python3-dev (3.12.7-1) ... 115s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ... 115s Setting up python3-weblogo (3.8.0-1) ... 115s Setting up cpp (4:14.1.0-2ubuntu1) ... 115s Setting up gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 115s Setting up libcups2t64:amd64 (2.4.10-1ubuntu2) ... 115s Setting up python3-all-dev (3.12.7-1) ... 115s Setting up libgs10-common (10.03.1~dfsg1-0ubuntu3) ... 115s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 115s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 115s Setting up gcc-14 (14.2.0-8ubuntu1) ... 115s Setting up g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 115s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 115s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 115s Setting up g++-14 (14.2.0-8ubuntu1) ... 115s Setting up libgs10:amd64 (10.03.1~dfsg1-0ubuntu3) ... 115s Setting up libtool (2.4.7-7build1) ... 115s Setting up ghostscript (10.03.1~dfsg1-0ubuntu3) ... 115s Setting up gcc (4:14.1.0-2ubuntu1) ... 115s Setting up dh-autoreconf (20) ... 115s Setting up g++ (4:14.1.0-2ubuntu1) ... 115s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 115s Setting up build-essential (12.10ubuntu1) ... 115s Setting up debhelper (13.20ubuntu1) ... 115s Setting up pybuild-plugin-autopkgtest (6.20241024) ... 115s Processing triggers for man-db (2.13.0-1) ... 117s Processing triggers for install-info (7.1.1-1) ... 117s Processing triggers for libc-bin (2.40-1ubuntu3) ... 117s Processing triggers for systemd (256.5-2ubuntu4) ... 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 119s Starting pkgProblemResolver with broken count: 0 119s Starting 2 pkgProblemResolver with broken count: 0 119s Done 119s The following NEW packages will be installed: 119s autopkgtest-satdep 119s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 119s Need to get 0 B/696 B of archives. 119s After this operation, 0 B of additional disk space will be used. 119s Get:1 /tmp/autopkgtest.XI7FWJ/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 119s Selecting previously unselected package autopkgtest-satdep. 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 83633 files and directories currently installed.) 119s Preparing to unpack .../2-autopkgtest-satdep.deb ... 119s Unpacking autopkgtest-satdep (0) ... 119s Setting up autopkgtest-satdep (0) ... 121s (Reading database ... 83633 files and directories currently installed.) 121s Removing autopkgtest-satdep (0) ... 121s autopkgtest [05:32:18]: test pybuild-autopkgtest: pybuild-autopkgtest 121s autopkgtest [05:32:18]: test pybuild-autopkgtest: [----------------------- 122s pybuild-autopkgtest 122s I: pybuild base:311: cd /tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build; python3.13 -m pytest -k 'not test_transformseq and not test_cli and not test_resources' 123s ============================= test session starts ============================== 123s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 123s rootdir: /tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build 123s plugins: typeguard-4.4.1 123s collected 0 items / 23 errors 123s 123s ==================================== ERRORS ==================================== 123s ___________________ ERROR collecting tests/test_array_io.py ____________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_array_io.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s ______________________ ERROR collecting tests/test_cli.py ______________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_cli.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s __________________ ERROR collecting tests/test_clustal_io.py ___________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_clustal_io.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s _____________________ ERROR collecting tests/test_data.py ______________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_data.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s ___________________ ERROR collecting tests/test_fasta_io.py ____________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_fasta_io.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s __________________ ERROR collecting tests/test_genbank_io.py ___________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_genbank_io.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s ______________ ERROR collecting tests/test_intelligenetics_io.py _______________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_intelligenetics_io.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s ____________________ ERROR collecting tests/test_matrix.py _____________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_matrix.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s ____________________ ERROR collecting tests/test_msf_io.py _____________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_msf_io.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s ____________________ ERROR collecting tests/test_nbrf_io.py ____________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_nbrf_io.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s _____________________ ERROR collecting tests/test_nexus.py _____________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_nexus.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s ___________________ ERROR collecting tests/test_nexus_io.py ____________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_nexus_io.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s ____________________ ERROR collecting tests/test_null_io.py ____________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_null_io.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s ___________________ ERROR collecting tests/test_phylip_io.py ___________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_phylip_io.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s ___________________ ERROR collecting tests/test_plain_io.py ____________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_plain_io.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s ______________________ ERROR collecting tests/test_seq.py ______________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_seq.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s ____________________ ERROR collecting tests/test_seq_io.py _____________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_seq_io.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s _________________ ERROR collecting tests/test_stockholm_io.py __________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_stockholm_io.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s ___________________ ERROR collecting tests/test_table_io.py ____________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_table_io.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s ___________________ ERROR collecting tests/test_transform.py ___________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_transform.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s _________________ ERROR collecting tests/test_transformseq.py __________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_transformseq.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s _____________________ ERROR collecting tests/test_utils.py _____________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_utils.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s ____________________ ERROR collecting tests/test_weblogo.py ____________________ 123s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_weblogo.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s tests/__init__.py:5: in 123s from weblogo.utils import resource_filename, resource_stream, resource_string 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 123s from .logo import * # noqa: F401, F403 123s /usr/lib/python3/dist-packages/weblogo/logo.py:51: in 123s import numpy as np 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s =============================== warnings summary =============================== 123s ../../../../usr/lib/python3/dist-packages/weblogo/__init__.py:1 123s /usr/lib/python3/dist-packages/weblogo/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 123s from pkg_resources import DistributionNotFound, get_distribution 123s 123s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 123s =========================== short test summary info ============================ 123s ERROR tests/test_array_io.py 123s ERROR tests/test_cli.py 123s ERROR tests/test_clustal_io.py 123s ERROR tests/test_data.py 123s ERROR tests/test_fasta_io.py 123s ERROR tests/test_genbank_io.py 123s ERROR tests/test_intelligenetics_io.py 123s ERROR tests/test_matrix.py 123s ERROR tests/test_msf_io.py 123s ERROR tests/test_nbrf_io.py 123s ERROR tests/test_nexus.py 123s ERROR tests/test_nexus_io.py 123s ERROR tests/test_null_io.py 123s ERROR tests/test_phylip_io.py 123s ERROR tests/test_plain_io.py 123s ERROR tests/test_seq.py 123s ERROR tests/test_seq_io.py 123s ERROR tests/test_stockholm_io.py 123s ERROR tests/test_table_io.py 123s ERROR tests/test_transform.py 123s ERROR tests/test_transformseq.py 123s ERROR tests/test_utils.py 123s ERROR tests/test_weblogo.py 123s !!!!!!!!!!!!!!!!!!! Interrupted: 23 errors during collection !!!!!!!!!!!!!!!!!!! 123s ======================== 1 warning, 23 errors in 0.76s ========================= 123s E: pybuild pybuild:389: test: plugin distutils failed with: exit code=2: cd /tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build; python3.13 -m pytest -k 'not test_transformseq and not test_cli and not test_resources' 123s I: pybuild base:311: cd /tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build; python3.12 -m pytest -k 'not test_transformseq and not test_cli and not test_resources' 124s ============================= test session starts ============================== 124s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 124s rootdir: /tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build 124s plugins: typeguard-4.4.1 124s collected 241 items / 1 error / 21 deselected / 220 selected 124s 124s ==================================== ERRORS ==================================== 124s ___________________ ERROR collecting tests/test_array_io.py ____________________ 124s ImportError while importing test module '/tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build/tests/test_array_io.py'. 124s Hint: make sure your test modules/packages have valid Python names. 124s Traceback: 124s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 124s return _bootstrap._gcd_import(name[level:], package, level) 124s tests/__init__.py:5: in 124s from weblogo.utils import resource_filename, resource_stream, resource_string 124s /usr/lib/python3/dist-packages/weblogo/__init__.py:9: in 124s from .logo import * # noqa: F401, F403 124s /usr/lib/python3/dist-packages/weblogo/logo.py:55: in 124s from scipy.stats import entropy 124s /usr/lib/python3/dist-packages/scipy/__init__.py:67: in 124s from scipy._lib import _pep440 124s /usr/lib/python3/dist-packages/scipy/_lib/__init__.py:12: in 124s from scipy._lib._testutils import PytestTester 124s /usr/lib/python3/dist-packages/scipy/_lib/_testutils.py:22: in 124s _v = sysconfig.get_config_var('HOST_GNU_TYPE') or '' 124s /usr/lib/python3.12/sysconfig.py:782: in get_config_var 124s return get_config_vars().get(name) 124s /usr/lib/python3.12/sysconfig.py:765: in get_config_vars 124s _init_config_vars() 124s /usr/lib/python3.12/sysconfig.py:706: in _init_config_vars 124s _init_posix(_CONFIG_VARS) 124s /usr/lib/python3.12/sysconfig.py:572: in _init_posix 124s _temp = __import__(name, globals(), locals(), ['build_time_vars'], 0) 124s E ModuleNotFoundError: No module named '_sysconfigdata__i386-linux-gnu' 124s =============================== warnings summary =============================== 124s ../../../../usr/lib/python3/dist-packages/weblogo/__init__.py:1 124s /usr/lib/python3/dist-packages/weblogo/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 124s from pkg_resources import DistributionNotFound, get_distribution 124s 124s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 124s =========================== short test summary info ============================ 124s ERROR tests/test_array_io.py 124s !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!! 124s ================== 21 deselected, 1 warning, 1 error in 0.64s ================== 124s E: pybuild pybuild:389: test: plugin distutils failed with: exit code=2: cd /tmp/autopkgtest.XI7FWJ/autopkgtest_tmp/build; python3.12 -m pytest -k 'not test_transformseq and not test_cli and not test_resources' 124s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13 124s make: *** [/tmp/NcquuE9cBr/run:4: pybuild-autopkgtest] Error 25 124s pybuild-autopkgtest: error: /tmp/NcquuE9cBr/run pybuild-autopkgtest returned exit code 2 124s autopkgtest [05:32:21]: test pybuild-autopkgtest: -----------------------] 125s autopkgtest [05:32:22]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 125s pybuild-autopkgtest FAIL non-zero exit status 25 125s autopkgtest [05:32:22]: @@@@@@@@@@@@@@@@@@@@ summary 125s pybuild-autopkgtest FAIL non-zero exit status 25 136s nova [W] Skipping flock for amd64 136s Creating nova instance adt-plucky-i386-python-weblogo-20241115-053017-juju-7f2275-prod-proposed-migration-environment-20-70626a5b-6ea0-48ee-8c29-c24f4e04d717 from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)...