0s autopkgtest [12:28:54]: starting date and time: 2025-01-08 12:28:54+0000 0s autopkgtest [12:28:54]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [12:28:54]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5kl96smt/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults --apt-upgrade python-pbcommand --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.13.1-1~exp2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-2.secgroup --name adt-plucky-i386-python-pbcommand-20250108-122854-juju-7f2275-prod-proposed-migration-environment-2-7005ee99-3308-4aa5-bb33-356e8b7e69df --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 51s autopkgtest [12:29:45]: testbed dpkg architecture: amd64 52s autopkgtest [12:29:46]: testbed apt version: 2.9.18 52s autopkgtest [12:29:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup 52s autopkgtest [12:29:46]: testbed release detected to be: None 53s autopkgtest [12:29:47]: updating testbed package index (apt update) 54s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 54s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 54s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 54s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 54s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [817 kB] 54s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 54s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [129 kB] 54s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.3 kB] 54s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [170 kB] 54s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [263 kB] 54s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.1 kB] 54s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2408 B] 54s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [1024 kB] 54s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [419 kB] 54s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [23.7 kB] 54s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [4028 B] 54s Fetched 2993 kB in 1s (3107 kB/s) 55s Reading package lists... 56s Reading package lists... 56s Building dependency tree... 56s Reading state information... 56s Calculating upgrade... 56s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 56s Reading package lists... 56s Building dependency tree... 56s Reading state information... 57s 0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded. 57s autopkgtest [12:29:51]: upgrading testbed (apt dist-upgrade and autopurge) 57s Reading package lists... 57s Building dependency tree... 57s Reading state information... 57s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 57s Starting 2 pkgProblemResolver with broken count: 0 57s Done 58s Entering ResolveByKeep 58s 58s The following packages were automatically installed and are no longer required: 58s python3.12 python3.12-minimal 58s Use 'sudo apt autoremove' to remove them. 58s The following NEW packages will be installed: 58s libpython3.13-minimal libpython3.13-stdlib python3.13 python3.13-minimal 58s The following packages will be upgraded: 58s libpython3-stdlib python3 python3-minimal 58s 3 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 58s Need to get 6118 kB of archives. 58s After this operation, 22.7 MB of additional disk space will be used. 58s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.1-2 [881 kB] 59s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.1-2 [2358 kB] 59s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.13.1-1~exp2 [27.6 kB] 59s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.13.1-1~exp2 [23.9 kB] 59s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.1-2 [2088 kB] 59s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.1-2 [729 kB] 59s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.13.1-1~exp2 [10.2 kB] 59s Fetched 6118 kB in 1s (7229 kB/s) 59s Selecting previously unselected package libpython3.13-minimal:amd64. 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75804 files and directories currently installed.) 60s Preparing to unpack .../libpython3.13-minimal_3.13.1-2_amd64.deb ... 60s Unpacking libpython3.13-minimal:amd64 (3.13.1-2) ... 60s Selecting previously unselected package python3.13-minimal. 60s Preparing to unpack .../python3.13-minimal_3.13.1-2_amd64.deb ... 60s Unpacking python3.13-minimal (3.13.1-2) ... 60s Setting up libpython3.13-minimal:amd64 (3.13.1-2) ... 60s Setting up python3.13-minimal (3.13.1-2) ... 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76124 files and directories currently installed.) 60s Preparing to unpack .../python3-minimal_3.13.1-1~exp2_amd64.deb ... 60s Unpacking python3-minimal (3.13.1-1~exp2) over (3.12.8-1) ... 60s Setting up python3-minimal (3.13.1-1~exp2) ... 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76124 files and directories currently installed.) 61s Preparing to unpack .../python3_3.13.1-1~exp2_amd64.deb ... 61s Unpacking python3 (3.13.1-1~exp2) over (3.12.8-1) ... 61s Selecting previously unselected package libpython3.13-stdlib:amd64. 61s Preparing to unpack .../libpython3.13-stdlib_3.13.1-2_amd64.deb ... 61s Unpacking libpython3.13-stdlib:amd64 (3.13.1-2) ... 61s Selecting previously unselected package python3.13. 61s Preparing to unpack .../python3.13_3.13.1-2_amd64.deb ... 61s Unpacking python3.13 (3.13.1-2) ... 61s Preparing to unpack .../libpython3-stdlib_3.13.1-1~exp2_amd64.deb ... 61s Unpacking libpython3-stdlib:amd64 (3.13.1-1~exp2) over (3.12.8-1) ... 61s Setting up libpython3.13-stdlib:amd64 (3.13.1-2) ... 61s Setting up libpython3-stdlib:amd64 (3.13.1-1~exp2) ... 61s Setting up python3.13 (3.13.1-2) ... 62s Setting up python3 (3.13.1-1~exp2) ... 62s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 62s for fn in glob1(directory, "%s.*" % fname): 62s Processing triggers for man-db (2.13.0-1) ... 62s Processing triggers for systemd (257-2ubuntu1) ... 63s Reading package lists... 63s Building dependency tree... 63s Reading state information... 63s Starting pkgProblemResolver with broken count: 0 63s Starting 2 pkgProblemResolver with broken count: 0 63s Done 63s The following packages will be REMOVED: 63s python3.12* python3.12-minimal* 64s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 64s After this operation, 8926 kB disk space will be freed. 64s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76541 files and directories currently installed.) 64s Removing python3.12 (3.12.8-3) ... 64s Removing python3.12-minimal (3.12.8-3) ... 64s /usr/bin/py3clean:125: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 64s for fn in glob1(directory, "%s.%s.py[co]" % (fname, magic_tag)): 64s Processing triggers for man-db (2.13.0-1) ... 65s Processing triggers for systemd (257-2ubuntu1) ... 65s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76513 files and directories currently installed.) 65s Purging configuration files for python3.12-minimal (3.12.8-3) ... 67s autopkgtest [12:30:01]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 68s autopkgtest [12:30:02]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pbcommand 69s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pbcommand 2.1.1+git20220616.3f2e6c2-3 (dsc) [2522 B] 69s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pbcommand 2.1.1+git20220616.3f2e6c2-3 (tar) [105 kB] 69s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pbcommand 2.1.1+git20220616.3f2e6c2-3 (diff) [5864 B] 69s gpgv: Signature made Fri Mar 22 17:59:55 2024 UTC 69s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 69s gpgv: Can't check signature: No public key 69s dpkg-source: warning: cannot verify inline signature for ./python-pbcommand_2.1.1+git20220616.3f2e6c2-3.dsc: no acceptable signature found 69s autopkgtest [12:30:03]: testing package python-pbcommand version 2.1.1+git20220616.3f2e6c2-3 70s autopkgtest [12:30:04]: build not needed 70s autopkgtest [12:30:04]: test run-unit-test: preparing testbed 70s Reading package lists... 71s Building dependency tree... 71s Reading state information... 71s Starting pkgProblemResolver with broken count: 0 71s Starting 2 pkgProblemResolver with broken count: 0 71s Done 71s The following NEW packages will be installed: 71s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 71s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5 71s libgomp1 libgraphite2-3 libharfbuzz0b libhts3t64 libhtscodecs2 71s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 71s libjs-jquery-hotkeys libjs-jquery-isonscreen libjs-jquery-metadata 71s libjs-jquery-tablesorter libjs-jquery-throttle-debounce liblapack3 71s liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 71s libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 71s libxrender1 python3-avro python3-biopython python3-cairo python3-coverage 71s python3-execnet python3-freetype python3-iniconfig python3-iso8601 71s python3-numpy python3-packaging python3-pbcommand python3-pbcore python3-pil 71s python3-pluggy python3-pysam python3-pytest python3-pytest-cov 71s python3-pytest-xdist python3-reportlab python3-rlpycairo python3-tz 71s python3.12 python3.12-minimal sgml-base w3c-sgml-lib x11-common 71s xfonts-encodings xfonts-utils xml-core 71s 0 upgraded, 68 newly installed, 0 to remove and 0 not upgraded. 71s Need to get 42.5 MB of archives. 71s After this operation, 171 MB of additional disk space will be used. 71s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-minimal amd64 3.12.8-3 [2349 kB] 72s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB] 72s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 72s Get:4 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] 72s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12 amd64 3.12.8-3 [667 kB] 72s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 72s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 72s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB] 72s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 72s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 72s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB] 72s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB] 72s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 72s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 72s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 72s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 72s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 72s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 72s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 72s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 72s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 72s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-12ubuntu1 [909 kB] 72s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-12ubuntu1 [148 kB] 72s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 72s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.1.0-1 [541 kB] 72s Get:26 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhtscodecs2 amd64 1.6.1-1 [132 kB] 72s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhts3t64 amd64 1.20+ds-2 [501 kB] 72s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 72s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 72s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 72s Get:31 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-metadata all 12-4 [6582 B] 72s Get:32 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 72s Get:33 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.5 kB] 72s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 72s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 72s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 72s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB] 72s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 72s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 72s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 72s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 72s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 72s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 72s Get:44 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-avro all 1.12.0+dfsg-1 [75.3 kB] 72s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [5319 kB] 73s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu2 [217 kB] 73s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 10.4.0-1ubuntu2 [580 kB] 73s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cairo amd64 1.26.1-2build1 [143 kB] 73s Get:49 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-freetype all 2.5.1-1 [92.3 kB] 73s Get:50 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B] 73s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-reportlab all 4.2.5-1 [1107 kB] 73s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB] 73s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB] 73s Get:54 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-biopython amd64 1.84+dfsg-4build1 [1719 kB] 73s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-coverage amd64 7.4.4+dfsg1-0ubuntu3 [150 kB] 73s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-execnet all 2.1.1-1 [33.4 kB] 73s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 73s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB] 73s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-iso8601 all 2.1.0-2 [9136 B] 73s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.2-1 [31.5 kB] 73s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pbcommand all 2.1.1+git20220616.3f2e6c2-3 [91.5 kB] 73s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pysam amd64 0.22.1+ds-2build1 [4446 kB] 73s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pbcore all 2.1.2+dfsg-10 [2836 kB] 73s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 73s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 73s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-isonscreen all 1.2.0-1.1 [3244 B] 73s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-cov all 5.0.0-1 [21.3 kB] 73s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest-xdist all 3.6.1-1 [33.8 kB] 73s Fetched 42.5 MB in 2s (21.5 MB/s) 73s Selecting previously unselected package python3.12-minimal. 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76513 files and directories currently installed.) 73s Preparing to unpack .../00-python3.12-minimal_3.12.8-3_amd64.deb ... 73s Unpacking python3.12-minimal (3.12.8-3) ... 73s Selecting previously unselected package sgml-base. 73s Preparing to unpack .../01-sgml-base_1.31_all.deb ... 73s Unpacking sgml-base (1.31) ... 73s Selecting previously unselected package libjs-jquery. 73s Preparing to unpack .../02-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 73s 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(2.5.1-1) ... 79s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 79s Setting up python3-tz (2024.2-1) ... 79s Setting up libfontenc1:amd64 (1:1.1.8-1build1) ... 79s Setting up libblas3:amd64 (3.12.0-4) ... 79s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 79s Setting up python3-packaging (24.2-1) ... 79s Setting up python3-iso8601 (2.1.0-2) ... 80s Setting up python3-avro (1.12.0+dfsg-1) ... 80s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 80s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 80s Setting up fonts-dejavu-mono (2.37-8) ... 80s Setting up fonts-dejavu-core (2.37-8) ... 80s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 80s Setting up libgfortran5:amd64 (14.2.0-12ubuntu1) ... 80s Setting up python3-pluggy (1.5.0-1) ... 80s Setting up libwebp7:amd64 (1.4.0-0.1) ... 80s Setting up libhts3t64:amd64 (1.20+ds-2) ... 80s Setting up libopenjp2-7:amd64 (2.5.0-2ubuntu2) ... 80s Setting up libharfbuzz0b:amd64 (10.1.0-1) ... 80s Setting up sgml-base (1.31) ... 80s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 80s Setting up libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... 80s Setting up python3-execnet (2.1.1-1) ... 80s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 80s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 80s Setting up liblapack3:amd64 (3.12.0-4) ... 80s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 80s Setting up python3-pysam (0.22.1+ds-2build1) ... 80s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 81s Setting up python3-pytest (8.3.3-1) ... 81s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 81s Setting up xfonts-utils (1:7.7+7) ... 81s Setting up libjs-jquery-metadata (12-4) ... 81s Setting up libraqm0:amd64 (0.10.2-1) ... 81s Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... 81s Setting up python3-numpy (1:1.26.4+ds-12) ... 84s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 84s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 84s Setting up xml-core (0.19) ... 84s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 84s Setting up python3-pytest-xdist (3.6.1-1) ... 84s Setting up python3-pytest-cov (5.0.0-1) ... 84s Setting up fonts-urw-base35 (20200910-8) ... 85s Setting up libcairo2:amd64 (1.18.2-2) ... 85s Setting up python3-pil:amd64 (10.4.0-1ubuntu2) ... 85s Setting up python3-pbcommand (2.1.1+git20220616.3f2e6c2-3) ... 85s Setting up python3-cairo (1.26.1-2build1) ... 86s Setting up python3-rlpycairo (0.3.0-3) ... 86s Setting up python3-reportlab (4.2.5-1) ... 87s Processing triggers for libc-bin (2.40-4ubuntu1) ... 87s Processing triggers for systemd (257-2ubuntu1) ... 87s Processing triggers for man-db (2.13.0-1) ... 88s Processing triggers for sgml-base (1.31) ... 88s Setting up w3c-sgml-lib (1.3-3) ... 111s Setting up python3-biopython (1.84+dfsg-4build1) ... 113s Setting up python3-pbcore (2.1.2+dfsg-10) ... 114s autopkgtest [12:30:48]: testbed environment configured for cross-architecture building 114s autopkgtest [12:30:48]: test run-unit-test: [----------------------- 115s ============================= test session starts ============================== 115s platform linux -- Python 3.13.1, pytest-8.3.3, pluggy-1.5.0 115s rootdir: /tmp/autopkgtest.Tl3TeM/autopkgtest_tmp 115s plugins: cov-5.0.0, typeguard-4.4.1, xdist-3.6.1 115s collected 125 items 115s 115s tests/test_models_common.py ..... [ 4%] 115s tests/test_models_common_pacbio_options.py ............................. [ 27%] 115s .. [ 28%] 115s tests/test_models_legacy.py . [ 29%] 115s tests/test_models_report.py ............................. [ 52%] 115s tests/test_models_report_attribute.py ..... [ 56%] 115s tests/test_models_report_column.py .. [ 58%] 115s tests/test_models_report_plot.py ..... [ 62%] 115s tests/test_models_report_plotgroup.py ..... [ 66%] 115s tests/test_models_report_table.py ............. [ 76%] 115s tests/test_pb_io_common.py . [ 77%] 115s tests/test_pb_io_report.py ........ [ 84%] 115s tests/test_testkit.py . [ 84%] 116s tests/test_testkit_xunit.py .... [ 88%] 116s tests/test_utils.py ......s [ 93%] 116s tests/test_validators.py ........ [100%] 116s 116s =============================== warnings summary =============================== 116s ../../../usr/lib/python3/dist-packages/pbcommand/__init__.py:1 116s /usr/lib/python3/dist-packages/pbcommand/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 116s import pkg_resources 116s 116s tests/test_utils.py:102 116s /tmp/autopkgtest.Tl3TeM/autopkgtest_tmp/tests/test_utils.py:102: PytestUnknownMarkWarning: Unknown pytest.mark.pbcore - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 116s @pytest.mark.pbcore 116s 116s tests/test_utils.py:103 116s /tmp/autopkgtest.Tl3TeM/autopkgtest_tmp/tests/test_utils.py:103: PytestUnknownMarkWarning: Unknown pytest.mark.pbtestdata - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 116s @pytest.mark.pbtestdata 116s 116s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 116s ================== 124 passed, 1 skipped, 3 warnings in 0.67s ================== 116s autopkgtest [12:30:50]: test run-unit-test: -----------------------] 117s autopkgtest [12:30:51]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 117s run-unit-test PASS 117s autopkgtest [12:30:51]: @@@@@@@@@@@@@@@@@@@@ summary 117s run-unit-test PASS 135s nova [W] Skipping flock for amd64 135s Creating nova instance adt-plucky-i386-python-pbcommand-20250108-122854-juju-7f2275-prod-proposed-migration-environment-2-7005ee99-3308-4aa5-bb33-356e8b7e69df from image adt/ubuntu-plucky-amd64-server-20250108.img (UUID 99ddef43-3911-4ae7-933a-ef999fcbb876)... 135s nova [W] Timed out waiting for 9980d25d-866a-40dd-bd1f-7bdfbd7dc048 to get deleted.