0s autopkgtest [23:14:56]: starting date and time: 2024-11-15 23:14:56+0000 0s autopkgtest [23:14:56]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [23:14:56]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4pakd752/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:scikit-learn --apt-upgrade python-pauvre --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scikit-learn/1.4.2+dfsg-6build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-31.secgroup --name adt-plucky-i386-python-pauvre-20241115-220449-juju-7f2275-prod-proposed-migration-environment-20-208f7a77-781f-40c2-b9cd-300f7795ecc3 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 51s autopkgtest [23:15:47]: testbed dpkg architecture: amd64 51s autopkgtest [23:15:47]: testbed apt version: 2.9.8 51s autopkgtest [23:15:47]: test architecture: i386 51s autopkgtest [23:15:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 52s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 53s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 53s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 53s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1046 kB] 53s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [93.0 kB] 53s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [176 kB] 53s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [111 kB] 53s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 53s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [296 kB] 53s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [806 kB] 53s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9416 B] 53s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 53s Fetched 2666 kB in 1s (3121 kB/s) 53s Reading package lists... 55s Reading package lists... 56s Building dependency tree... 56s Reading state information... 56s Calculating upgrade... 56s The following NEW packages will be installed: 56s libassuan9 56s The following packages will be upgraded: 56s libgpgme11t64 libseccomp2 python3-cffi-backend 56s 3 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 56s Need to get 348 kB of archives. 56s After this operation, 361 kB of additional disk space will be used. 56s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libseccomp2 amd64 2.5.5-1ubuntu5 [53.3 kB] 56s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cffi-backend amd64 1.17.1-2build1 [96.7 kB] 56s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libassuan9 amd64 3.0.1-2 [42.9 kB] 56s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.24.0-2ubuntu1 [155 kB] 57s Fetched 348 kB in 0s (744 kB/s) 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75576 files and directories currently installed.) 57s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu5_amd64.deb ... 57s Unpacking libseccomp2:amd64 (2.5.5-1ubuntu5) over (2.5.5-1ubuntu4) ... 57s Setting up libseccomp2:amd64 (2.5.5-1ubuntu5) ... 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75576 files and directories currently installed.) 57s Preparing to unpack .../python3-cffi-backend_1.17.1-2build1_amd64.deb ... 57s Unpacking python3-cffi-backend:amd64 (1.17.1-2build1) over (1.17.1-2) ... 57s Selecting previously unselected package libassuan9:amd64. 57s Preparing to unpack .../libassuan9_3.0.1-2_amd64.deb ... 57s Unpacking libassuan9:amd64 (3.0.1-2) ... 57s Preparing to unpack .../libgpgme11t64_1.24.0-2ubuntu1_amd64.deb ... 57s Unpacking libgpgme11t64:amd64 (1.24.0-2ubuntu1) over (1.23.2-5ubuntu4) ... 57s Setting up libassuan9:amd64 (3.0.1-2) ... 57s Setting up libgpgme11t64:amd64 (1.24.0-2ubuntu1) ... 57s Setting up python3-cffi-backend:amd64 (1.17.1-2build1) ... 57s Processing triggers for libc-bin (2.40-1ubuntu3) ... 57s Reading package lists... 57s Building dependency tree... 57s Reading state information... 58s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 58s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 58s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 58s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 58s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 59s Reading package lists... 59s Reading package lists... 59s Building dependency tree... 59s Reading state information... 59s Calculating upgrade... 59s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 59s Reading package lists... 59s Building dependency tree... 59s Reading state information... 60s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 62s autopkgtest [23:15:58]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 62s autopkgtest [23:15:58]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pauvre 64s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (dsc) [2485 B] 64s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (tar) [61.9 kB] 64s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (diff) [8548 B] 64s gpgv: Signature made Thu Nov 7 22:55:52 2024 UTC 64s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 64s gpgv: issuer "emollier@debian.org" 64s gpgv: Can't check signature: No public key 64s dpkg-source: warning: cannot verify inline signature for ./python-pauvre_0.2.3-4.dsc: no acceptable signature found 64s autopkgtest [23:16:00]: testing package python-pauvre version 0.2.3-4 64s autopkgtest [23:16:00]: build not needed 65s autopkgtest [23:16:01]: test run-unit-test: preparing testbed 67s Note, using file '/tmp/autopkgtest.odHIJm/1-autopkgtest-satdep.dsc' to get the build dependencies 67s Reading package lists... 67s Building dependency tree... 67s Reading state information... 67s Starting pkgProblemResolver with broken count: 0 67s Starting 2 pkgProblemResolver with broken count: 0 67s Done 68s The following NEW packages will be installed: 68s blt build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 68s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx 68s fonts-urw-base35 g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc 68s gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu libasan8 libblas3 68s libcairo2 libcc1-0 libdeflate0 libfontconfig1 libfontenc1 libgcc-14-dev 68s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libimagequant0 68s libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 68s libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libmpc3 68s libopenjp2-7 libpixman-1-0 libqhull-r8.0 libquadmath0 libraqm0 libsharpyuv0 68s libstdc++-14-dev libtcl8.6 libtiff6 libtk8.6 libtsan2 libubsan1 libwebp7 68s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 68s libxslt1.1 libxss1 python-matplotlib-data python3-appdirs python3-biopython 68s python3-brotli python3-cairo python3-contourpy python3-cycler 68s python3-dateutil python3-decorator python3-fonttools python3-freetype 68s python3-fs python3-joblib python3-kiwisolver python3-lxml python3-lz4 68s python3-matplotlib python3-mpmath python3-nanoget-examples python3-numpy 68s python3-packaging python3-pandas python3-pandas-lib python3-pauvre 68s python3-pil python3-pil.imagetk python3-reportlab python3-rlpycairo 68s python3-scipy python3-six python3-sklearn python3-sklearn-lib python3-sympy 68s python3-threadpoolctl python3-tk python3-tz python3-ufolib2 68s python3-unicodedata2 python3.12-tk sgml-base tk8.6-blt2.5 unicode-data 68s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 68s 0 upgraded, 114 newly installed, 0 to remove and 0 not upgraded. 68s Need to get 185 MB of archives. 68s After this operation, 650 MB of additional disk space will be used. 68s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB] 68s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1085 kB] 68s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 68s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 68s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB] 68s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 68s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 68s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB] 68s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB] 68s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 68s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 68s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 68s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 68s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 68s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.15-1 [862 kB] 69s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 69s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 69s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 69s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 69s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 69s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 69s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 69s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 69s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 69s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 69s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 69s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 69s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 69s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 69s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 69s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 69s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 69s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 69s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 70s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 70s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 70s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 70s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 70s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 70s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 70s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 70s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 70s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 70s Get:44 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.2.1-1 [171 kB] 70s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 70s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 70s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 70s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 70s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 70s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 70s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 70s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 70s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 70s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 70s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 70s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 70s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 70s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 70s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 70s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 70s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 70s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 70s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 70s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 70s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 70s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 70s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 70s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 71s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 71s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 71s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu1 [169 kB] 71s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-3 [2928 kB] 71s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 71s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 71s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.7-3 [116 kB] 71s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tk amd64 3.12.6-1ubuntu1 [9806 B] 71s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 10.4.0-1ubuntu1 [9394 B] 71s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 71s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 10.4.0-1ubuntu1 [463 kB] 71s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cairo amd64 1.26.1-2 [119 kB] 71s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-freetype all 2.5.1-1 [92.3 kB] 71s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B] 71s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-reportlab all 4.2.5-1 [1107 kB] 71s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB] 71s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB] 71s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-biopython amd64 1.84+dfsg-4 [1714 kB] 71s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 71s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.0-2build1 [271 kB] 71s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 71s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 71s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 71s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 71s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 71s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 71s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 71s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 71s Get:97 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB] 71s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 71s Get:99 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.0-1 [1282 kB] 71s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 71s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build2 [360 kB] 72s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 72s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 72s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.3.2-5 [206 kB] 72s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-2build1 [70.3 kB] 72s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 72s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-3 [4545 kB] 73s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nanoget-examples all 1.19.3-1 [26.2 MB] 74s Get:109 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [5087 kB] 74s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 74s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 74s Get:112 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-6build1 [6868 kB] 74s Get:113 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-sklearn all 1.4.2+dfsg-6build1 [2257 kB] 74s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pauvre all 0.2.3-4 [52.7 kB] 75s Fetched 185 MB in 7s (27.8 MB/s) 75s Selecting previously unselected package sgml-base. 75s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75582 files and directories currently installed.) 75s Preparing to unpack .../000-sgml-base_1.31_all.deb ... 75s Unpacking sgml-base (1.31) ... 75s Selecting previously unselected package libtcl8.6:amd64. 75s Preparing to unpack .../001-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... 75s Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... 75s Selecting previously unselected package fonts-dejavu-mono. 75s Preparing to unpack .../002-fonts-dejavu-mono_2.37-8_all.deb ... 75s Unpacking fonts-dejavu-mono (2.37-8) ... 75s Selecting previously unselected package fonts-dejavu-core. 75s Preparing to unpack .../003-fonts-dejavu-core_2.37-8_all.deb ... 75s Unpacking fonts-dejavu-core (2.37-8) ... 75s Selecting previously unselected package libfontenc1:amd64. 75s Preparing to unpack .../004-libfontenc1_1%3a1.1.8-1build1_amd64.deb ... 75s Unpacking libfontenc1:amd64 (1:1.1.8-1build1) ... 75s Selecting previously unselected package x11-common. 75s Preparing to unpack .../005-x11-common_1%3a7.7+23ubuntu3_all.deb ... 75s Unpacking x11-common (1:7.7+23ubuntu3) ... 75s Selecting previously unselected package xfonts-encodings. 75s Preparing to unpack .../006-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 75s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 75s Selecting previously unselected package xfonts-utils. 75s Preparing to unpack .../007-xfonts-utils_1%3a7.7+7_amd64.deb ... 75s Unpacking xfonts-utils (1:7.7+7) ... 75s Selecting previously unselected package fonts-urw-base35. 75s Preparing to unpack .../008-fonts-urw-base35_20200910-8_all.deb ... 75s Unpacking fonts-urw-base35 (20200910-8) ... 75s Selecting previously unselected package fontconfig-config. 75s Preparing to unpack .../009-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 75s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 75s Selecting previously unselected package libfontconfig1:amd64. 75s Preparing to unpack .../010-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 75s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 75s Selecting previously unselected package libxrender1:amd64. 75s Preparing to unpack .../011-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 75s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 75s Selecting previously unselected package libxft2:amd64. 75s Preparing to unpack .../012-libxft2_2.3.6-1build1_amd64.deb ... 75s Unpacking libxft2:amd64 (2.3.6-1build1) ... 75s Selecting previously unselected package libxss1:amd64. 75s Preparing to unpack .../013-libxss1_1%3a1.2.3-1build3_amd64.deb ... 75s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 75s Selecting previously unselected package libtk8.6:amd64. 75s Preparing to unpack .../014-libtk8.6_8.6.15-1_amd64.deb ... 75s Unpacking libtk8.6:amd64 (8.6.15-1) ... 76s Selecting previously unselected package tk8.6-blt2.5. 76s Preparing to unpack .../015-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 76s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 76s Selecting previously unselected package blt. 76s Preparing to unpack .../016-blt_2.5.3+dfsg-7build1_amd64.deb ... 76s Unpacking blt (2.5.3+dfsg-7build1) ... 76s Selecting previously unselected package libisl23:amd64. 76s Preparing to unpack .../017-libisl23_0.27-1_amd64.deb ... 76s Unpacking libisl23:amd64 (0.27-1) ... 76s Selecting previously unselected package libmpc3:amd64. 76s Preparing to unpack .../018-libmpc3_1.3.1-1build2_amd64.deb ... 76s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 76s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 76s Preparing to unpack .../019-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package cpp-14. 76s Preparing to unpack .../020-cpp-14_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package cpp-x86-64-linux-gnu. 76s Preparing to unpack .../021-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 76s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 76s Selecting previously unselected package cpp. 76s Preparing to unpack .../022-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 76s Unpacking cpp (4:14.1.0-2ubuntu1) ... 76s Selecting previously unselected package libcc1-0:amd64. 76s Preparing to unpack .../023-libcc1-0_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libcc1-0:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package libgomp1:amd64. 76s Preparing to unpack .../024-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package libitm1:amd64. 76s Preparing to unpack .../025-libitm1_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libitm1:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package libasan8:amd64. 76s Preparing to unpack .../026-libasan8_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libasan8:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package liblsan0:amd64. 76s Preparing to unpack .../027-liblsan0_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking liblsan0:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package libtsan2:amd64. 76s Preparing to unpack .../028-libtsan2_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libtsan2:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package libubsan1:amd64. 76s Preparing to unpack .../029-libubsan1_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libubsan1:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package libhwasan0:amd64. 76s Preparing to unpack .../030-libhwasan0_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libhwasan0:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package libquadmath0:amd64. 76s Preparing to unpack .../031-libquadmath0_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libquadmath0:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package libgcc-14-dev:amd64. 76s Preparing to unpack .../032-libgcc-14-dev_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 76s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 76s Preparing to unpack .../033-gcc-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 76s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 77s Selecting previously unselected package gcc-14. 77s Preparing to unpack .../034-gcc-14_14.2.0-8ubuntu1_amd64.deb ... 77s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 77s Selecting previously unselected package gcc-x86-64-linux-gnu. 77s Preparing to unpack .../035-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 77s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 77s Selecting previously unselected package gcc. 77s Preparing to unpack .../036-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 77s Unpacking gcc (4:14.1.0-2ubuntu1) ... 77s Selecting previously unselected package libstdc++-14-dev:amd64. 77s Preparing to unpack .../037-libstdc++-14-dev_14.2.0-8ubuntu1_amd64.deb ... 77s Unpacking libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 77s Selecting previously unselected package g++-14-x86-64-linux-gnu. 77s Preparing to unpack .../038-g++-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 77s Unpacking g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 77s Selecting previously unselected package g++-14. 77s Preparing to unpack .../039-g++-14_14.2.0-8ubuntu1_amd64.deb ... 77s Unpacking g++-14 (14.2.0-8ubuntu1) ... 77s Selecting previously unselected package g++-x86-64-linux-gnu. 77s Preparing to unpack .../040-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 77s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 77s Selecting previously unselected package g++. 77s Preparing to unpack .../041-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 77s Unpacking g++ (4:14.1.0-2ubuntu1) ... 77s Selecting previously unselected package build-essential. 77s Preparing to unpack .../042-build-essential_12.10ubuntu1_amd64.deb ... 77s Unpacking build-essential (12.10ubuntu1) ... 77s Selecting previously unselected package fonts-lyx. 77s Preparing to unpack .../043-fonts-lyx_2.4.2.1-1_all.deb ... 77s Unpacking fonts-lyx (2.4.2.1-1) ... 77s Selecting previously unselected package libblas3:amd64. 77s Preparing to unpack .../044-libblas3_3.12.0-3build2_amd64.deb ... 77s Unpacking libblas3:amd64 (3.12.0-3build2) ... 77s Selecting previously unselected package libpixman-1-0:amd64. 77s Preparing to unpack .../045-libpixman-1-0_0.44.0-3_amd64.deb ... 77s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 77s Selecting previously unselected package libxcb-render0:amd64. 77s Preparing to unpack .../046-libxcb-render0_1.17.0-2_amd64.deb ... 77s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 77s Selecting previously unselected package libxcb-shm0:amd64. 77s Preparing to unpack .../047-libxcb-shm0_1.17.0-2_amd64.deb ... 77s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 77s Selecting previously unselected package libcairo2:amd64. 77s Preparing to unpack .../048-libcairo2_1.18.2-2_amd64.deb ... 77s Unpacking libcairo2:amd64 (1.18.2-2) ... 77s Selecting previously unselected package libdeflate0:amd64. 77s Preparing to unpack .../049-libdeflate0_1.22-1_amd64.deb ... 77s Unpacking libdeflate0:amd64 (1.22-1) ... 77s Selecting previously unselected package libgfortran5:amd64. 77s Preparing to unpack .../050-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 77s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 77s Selecting previously unselected package libgraphite2-3:amd64. 77s Preparing to unpack .../051-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 77s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 77s Selecting previously unselected package libharfbuzz0b:amd64. 77s Preparing to unpack .../052-libharfbuzz0b_10.0.1-1_amd64.deb ... 77s Unpacking libharfbuzz0b:amd64 (10.0.1-1) ... 77s Selecting previously unselected package libimagequant0:amd64. 77s Preparing to unpack .../053-libimagequant0_2.18.0-1build1_amd64.deb ... 77s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 77s Selecting previously unselected package libjpeg-turbo8:amd64. 77s Preparing to unpack .../054-libjpeg-turbo8_2.1.5-2ubuntu2_amd64.deb ... 77s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 77s Selecting previously unselected package libjpeg8:amd64. 77s Preparing to unpack .../055-libjpeg8_8c-2ubuntu11_amd64.deb ... 77s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 77s Selecting previously unselected package libjs-jquery. 77s Preparing to unpack .../056-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 77s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 77s Selecting previously unselected package libjs-jquery-ui. 77s Preparing to unpack .../057-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 77s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 78s Selecting previously unselected package liblapack3:amd64. 78s Preparing to unpack .../058-liblapack3_3.12.0-3build2_amd64.deb ... 78s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 78s Selecting previously unselected package liblbfgsb0:amd64. 78s Preparing to unpack .../059-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 78s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 78s Selecting previously unselected package liblcms2-2:amd64. 78s Preparing to unpack .../060-liblcms2-2_2.16-2_amd64.deb ... 78s Unpacking liblcms2-2:amd64 (2.16-2) ... 78s Selecting previously unselected package liblerc4:amd64. 78s Preparing to unpack .../061-liblerc4_4.0.0+ds-4ubuntu2_amd64.deb ... 78s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu2) ... 78s Selecting previously unselected package libqhull-r8.0:amd64. 78s Preparing to unpack .../062-libqhull-r8.0_2020.2-6build1_amd64.deb ... 78s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 78s Selecting previously unselected package libraqm0:amd64. 78s Preparing to unpack .../063-libraqm0_0.10.1-1build1_amd64.deb ... 78s Unpacking libraqm0:amd64 (0.10.1-1build1) ... 78s Selecting previously unselected package libsharpyuv0:amd64. 78s Preparing to unpack .../064-libsharpyuv0_1.4.0-0.1_amd64.deb ... 78s Unpacking libsharpyuv0:amd64 (1.4.0-0.1) ... 78s Selecting previously unselected package libjbig0:amd64. 78s Preparing to unpack .../065-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 78s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 78s Selecting previously unselected package libwebp7:amd64. 78s Preparing to unpack .../066-libwebp7_1.4.0-0.1_amd64.deb ... 78s Unpacking libwebp7:amd64 (1.4.0-0.1) ... 78s Selecting previously unselected package libtiff6:amd64. 78s Preparing to unpack .../067-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 78s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 78s Selecting previously unselected package libwebpdemux2:amd64. 78s Preparing to unpack .../068-libwebpdemux2_1.4.0-0.1_amd64.deb ... 78s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... 78s Selecting previously unselected package libwebpmux3:amd64. 78s Preparing to unpack .../069-libwebpmux3_1.4.0-0.1_amd64.deb ... 78s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... 78s Selecting previously unselected package libxslt1.1:amd64. 78s Preparing to unpack .../070-libxslt1.1_1.1.39-0exp1ubuntu1_amd64.deb ... 78s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu1) ... 78s Selecting previously unselected package python-matplotlib-data. 78s Preparing to unpack .../071-python-matplotlib-data_3.8.3-3_all.deb ... 78s Unpacking python-matplotlib-data (3.8.3-3) ... 78s Selecting previously unselected package python3-appdirs. 78s Preparing to unpack .../072-python3-appdirs_1.4.4-4_all.deb ... 78s Unpacking python3-appdirs (1.4.4-4) ... 78s Selecting previously unselected package python3-numpy. 78s Preparing to unpack .../073-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 78s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 78s Selecting previously unselected package python3.12-tk. 78s Preparing to unpack .../074-python3.12-tk_3.12.7-3_amd64.deb ... 78s Unpacking python3.12-tk (3.12.7-3) ... 78s Selecting previously unselected package python3-tk:amd64. 78s Preparing to unpack .../075-python3-tk_3.12.6-1ubuntu1_amd64.deb ... 78s Unpacking python3-tk:amd64 (3.12.6-1ubuntu1) ... 78s Selecting previously unselected package python3-pil.imagetk:amd64. 78s Preparing to unpack .../076-python3-pil.imagetk_10.4.0-1ubuntu1_amd64.deb ... 78s Unpacking python3-pil.imagetk:amd64 (10.4.0-1ubuntu1) ... 78s Selecting previously unselected package libopenjp2-7:amd64. 78s Preparing to unpack .../077-libopenjp2-7_2.5.0-2ubuntu1_amd64.deb ... 78s Unpacking libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 78s Selecting previously unselected package python3-pil:amd64. 78s Preparing to unpack .../078-python3-pil_10.4.0-1ubuntu1_amd64.deb ... 78s Unpacking python3-pil:amd64 (10.4.0-1ubuntu1) ... 78s Selecting previously unselected package python3-cairo. 78s Preparing to unpack .../079-python3-cairo_1.26.1-2_amd64.deb ... 78s Unpacking python3-cairo (1.26.1-2) ... 78s Selecting previously unselected package python3-freetype. 78s Preparing to unpack .../080-python3-freetype_2.5.1-1_all.deb ... 78s Unpacking python3-freetype (2.5.1-1) ... 78s Selecting previously unselected package python3-rlpycairo. 78s Preparing to unpack .../081-python3-rlpycairo_0.3.0-3_all.deb ... 78s Unpacking python3-rlpycairo (0.3.0-3) ... 79s Selecting previously unselected package python3-reportlab. 79s Preparing to unpack .../082-python3-reportlab_4.2.5-1_all.deb ... 79s Unpacking python3-reportlab (4.2.5-1) ... 79s Selecting previously unselected package xml-core. 79s Preparing to unpack .../083-xml-core_0.19_all.deb ... 79s Unpacking xml-core (0.19) ... 79s Selecting previously unselected package w3c-sgml-lib. 79s Preparing to unpack .../084-w3c-sgml-lib_1.3-3_all.deb ... 79s Unpacking w3c-sgml-lib (1.3-3) ... 79s Selecting previously unselected package python3-biopython. 79s Preparing to unpack .../085-python3-biopython_1.84+dfsg-4_amd64.deb ... 79s Unpacking python3-biopython (1.84+dfsg-4) ... 79s Selecting previously unselected package python3-brotli. 79s Preparing to unpack .../086-python3-brotli_1.1.0-2build2_amd64.deb ... 79s Unpacking python3-brotli (1.1.0-2build2) ... 79s Selecting previously unselected package python3-contourpy. 79s Preparing to unpack .../087-python3-contourpy_1.3.0-2build1_amd64.deb ... 79s Unpacking python3-contourpy (1.3.0-2build1) ... 79s Selecting previously unselected package python3-cycler. 79s Preparing to unpack .../088-python3-cycler_0.12.1-1_all.deb ... 79s Unpacking python3-cycler (0.12.1-1) ... 79s 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package lists... 128s Building dependency tree... 128s Reading state information... 128s Starting pkgProblemResolver with broken count: 0 128s Starting 2 pkgProblemResolver with broken count: 0 128s Done 128s The following NEW packages will be installed: 128s autopkgtest-satdep 128s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 128s Need to get 0 B/700 B of archives. 128s After this operation, 0 B of additional disk space will be used. 128s Get:1 /tmp/autopkgtest.odHIJm/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 128s Selecting previously unselected package autopkgtest-satdep. 129s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 88689 files and directories currently installed.) 129s Preparing to unpack .../2-autopkgtest-satdep.deb ... 129s Unpacking autopkgtest-satdep (0) ... 129s Setting up autopkgtest-satdep (0) ... 130s (Reading database ... 88689 files and directories currently installed.) 130s Removing autopkgtest-satdep (0) ... 131s autopkgtest [23:17:07]: test run-unit-test: [----------------------- 131s 131s #git clone https://github.com/wdecoster/nanotest.git 131s 131s pauvre -h 131s usage: pauvre [-h] [-v] 131s {browser,custommargin,marginplot,redwood,stats,synplot} ... 131s 131s options: 131s -h, --help show this help message and exit 131s -v, --version Installed pauvre version 131s 131s [sub-commands]: 131s {browser,custommargin,marginplot,redwood,stats,synplot} 131s browser an adaptable genome browser with various track types 131s custommargin plot custom marginal histograms of tab-delimited files 131s marginplot plot a marginal histogram of a fastq file 131s redwood make a redwood plot from a bam file 131s stats outputs stats from a fastq file 131s synplot make a synteny plot from a gff file, protein 131s alignment, and partition file 131s 131s pauvre marginplot -h 131s usage: pauvre marginplot [-h] [-q] [--dpi dpi] [-f FASTQ] 131s [--fileform STRING [STRING ...]] 131s [--filt_maxlen FILT_MAXLEN] 131s [--filt_maxqual FILT_MAXQUAL] 131s [--filt_minlen FILT_MINLEN] 131s [--filt_minqual FILT_MINQUAL] [--kmerdf KMERDF] [-n] 131s [--no_timestamp] [-o BASENAME] 131s [--plot_maxlen PLOT_MAXLEN] 131s [--plot_maxqual PLOT_MAXQUAL] 131s [--plot_minlen PLOT_MINLEN] 131s [--plot_minqual PLOT_MINQUAL] [--lengthbin LENGTHBIN] 131s [--qualbin QUALBIN] [-t TITLE] [-y] 131s 131s options: 131s -h, --help show this help message and exit 131s -q, --quiet Do not output warnings to stderr 131s --dpi dpi Change the dpi from the default 600 if you need it 131s higher 131s -f FASTQ, --fastq FASTQ 131s The input FASTQ file. 131s --fileform STRING [STRING ...] 131s Which output format would you like? Def.=png 131s --filt_maxlen FILT_MAXLEN 131s This sets the max read length filter reads. 131s --filt_maxqual FILT_MAXQUAL 131s This sets the max mean read quality to filter reads. 131s --filt_minlen FILT_MINLEN 131s This sets the min read length to filter reads. 131s --filt_minqual FILT_MINQUAL 131s This sets the min mean read quality to filter reads. 131s --kmerdf KMERDF Pass the filename of a data matrix if you would like 131s to plot read length versus number of kmers in that 131s read. The data matrix is a tab-separated text file 131s with columns "id length numks and kmers", where: 131s = read id = the length of the read = 131s the number of canonical kmers in the read = a 131s list representation of kmers ie ['GAT', 'GTA'] 131s -n, --no_transparent Specify this option if you don't want a transparent 131s background. Default is on. 131s --no_timestamp Turn off time stamps in the filename output. 131s -o BASENAME, --output_base_name BASENAME 131s Specify a base name for the output file(s). The input 131s file base name is the default. 131s --plot_maxlen PLOT_MAXLEN 131s Sets the maximum viewing area in the length dimension. 131s --plot_maxqual PLOT_MAXQUAL 131s Sets the maximum viewing area in the quality 131s dimension. 131s --plot_minlen PLOT_MINLEN 131s Sets the minimum viewing area in the length dimension. 131s --plot_minqual PLOT_MINQUAL 131s Sets the minimum viewing area in the quality 131s dimension. 131s --lengthbin LENGTHBIN 131s This sets the bin size to use for length. 131s --qualbin QUALBIN This sets the bin size to use for quality 131s -t TITLE, --title TITLE 131s This sets the title for the whole plot. Use --title 131s "Crustacean's DNA read quality" if you need single 131s quote or apostrophe inside title. 131s -y, --add-yaxes Add Y-axes to both marginal histograms. 131s pauvre marginplot -f nanotest/reads.fastq.gz 133s Keeping reads that satisfy: length >= 0 and meanQual >= 0 134s # Fastq stats for reads.fastq.gz, reads >= 0bp 134s numReads: 371 134s %totalNumReads: 100.00 134s numBasepairs: 8611871 134s %totalBasepairs: 100.00 134s meanLen: 23212.590296495957 134s medianLen: 9390.0 134s minLen: 212 134s maxLen: 393431 134s N50: 60395 134s L50: 36 134s 134s # Fastq stats for reads.fastq.gz, reads >= 1000bp 134s numReads: 349 134s %totalNumReads: 94.07 134s numBasepairs: 8599196 134s %totalBasepairs: 99.85 134s meanLen: 24639.530085959886 134s medianLen: 10585.0 134s minLen: 1009 134s maxLen: 393431 134s N50: 60395 134s L50: 36 134s 134s # Fastq stats for reads.fastq.gz, reads >= 5000bp 134s numReads: 246 134s %totalNumReads: 66.31 134s numBasepairs: 8296771 134s %totalBasepairs: 96.34 134s meanLen: 33726.71138211382 134s medianLen: 17146.0 134s minLen: 5082 134s maxLen: 393431 134s N50: 61111 134s L50: 33 134s 134s # Fastq stats for reads.fastq.gz, reads >= 10000bp 134s numReads: 178 134s %totalNumReads: 47.98 134s numBasepairs: 7817574 134s %totalBasepairs: 90.78 134s meanLen: 43918.95505617977 134s medianLen: 25216.5 134s minLen: 10192 134s maxLen: 393431 134s N50: 67193 134s L50: 30 134s 134s 134s Basepairs >= bin by mean PHRED and length 134s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 134s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 134s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 134s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 134s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 134s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 134s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 134s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 134s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 134s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 134s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 134s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 134s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 134s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 134s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 134s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 134s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 134s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 134s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 134s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 134s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 134s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 134s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 134s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 134s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 134s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 134s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 134s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 134s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 134s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 134s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 134s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 134s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 134s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 134s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 134s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 134s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 134s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 134s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 134s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 134s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 134s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 134s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 134s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 134s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 134s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 134s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 134s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 134s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 134s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 134s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 134s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 134s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 134s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 134s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 134s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 134s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 134s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 134s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 134s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 134s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 134s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 134s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 134s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 134s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 134s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 134s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 134s 140000 1699582 1699582 1378920 930176 341725 0 0 0 134s 160000 1699582 1699582 1378920 930176 341725 0 0 0 134s 180000 1699582 1699582 1378920 930176 341725 0 0 0 134s 200000 1504562 1504562 1183900 735156 341725 0 0 0 134s 220000 1504562 1504562 1183900 735156 341725 0 0 0 134s 240000 1055818 1055818 735156 735156 341725 0 0 0 134s 260000 1055818 1055818 735156 735156 341725 0 0 0 134s 280000 1055818 1055818 735156 735156 341725 0 0 0 134s 300000 1055818 1055818 735156 735156 341725 0 0 0 134s 320000 1055818 1055818 735156 735156 341725 0 0 0 134s 340000 735156 735156 735156 735156 341725 0 0 0 134s 360000 393431 393431 393431 393431 0 0 0 0 134s 380000 393431 393431 393431 393431 0 0 0 0 134s 400000 0 0 0 0 0 0 0 0 134s 134s Number of reads >= bin by mean Phred+Len 134s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 134s 0 371 321 277 207 114 49 2 0 134s 250 369 320 276 206 113 48 2 0 134s 500 363 315 273 203 112 47 2 0 134s 750 355 311 270 201 111 46 2 0 134s 1000 349 307 266 197 108 44 2 0 134s 1500 341 302 263 194 106 44 2 0 134s 2000 322 284 245 179 98 42 2 0 134s 2500 308 271 233 172 94 40 2 0 134s 3000 296 264 227 167 93 40 2 0 134s 3500 282 251 215 156 84 36 2 0 134s 4000 268 237 201 144 79 36 2 0 134s 4500 256 226 192 140 77 34 2 0 134s 5000 246 216 184 134 73 33 2 0 134s 5500 236 208 176 130 72 32 1 0 134s 6000 226 199 167 121 68 30 1 0 134s 6500 215 190 160 115 65 28 0 0 134s 7000 209 185 156 113 64 28 0 0 134s 7500 203 179 151 110 62 26 0 0 134s 8000 197 174 146 106 59 25 0 0 134s 8500 191 170 142 103 57 25 0 0 134s 9000 188 167 140 101 56 24 0 0 134s 9500 182 161 137 100 55 24 0 0 134s 10000 178 157 135 99 54 24 0 0 134s 11000 169 150 129 94 51 24 0 0 134s 12000 160 142 122 90 48 22 0 0 134s 13000 144 128 111 84 46 21 0 0 134s 14000 138 123 107 80 44 19 0 0 134s 15000 134 119 103 76 41 18 0 0 134s 16000 130 116 100 74 41 18 0 0 134s 17000 123 109 94 69 38 17 0 0 134s 18000 119 105 90 65 34 16 0 0 134s 19000 115 102 87 63 33 15 0 0 134s 20000 111 98 84 61 33 15 0 0 134s 21000 105 93 80 58 30 13 0 0 134s 22000 100 90 77 56 28 12 0 0 134s 23000 96 86 73 53 26 11 0 0 134s 24000 94 84 71 51 26 11 0 0 134s 25000 90 80 68 49 25 11 0 0 134s 26000 88 78 67 49 25 11 0 0 134s 27000 84 74 64 47 23 10 0 0 134s 28000 81 71 61 46 22 9 0 0 134s 29000 76 66 57 42 21 8 0 0 134s 30000 71 61 52 38 20 8 0 0 134s 31000 69 59 50 36 19 7 0 0 134s 32000 67 57 48 34 18 7 0 0 134s 33000 66 56 47 33 18 7 0 0 134s 34000 66 56 47 33 18 7 0 0 134s 35000 64 55 46 32 18 7 0 0 134s 36000 61 52 45 31 18 7 0 0 134s 37000 58 49 44 30 17 7 0 0 134s 38000 58 49 44 30 17 7 0 0 134s 39000 57 49 44 30 17 7 0 0 134s 40000 57 49 44 30 17 7 0 0 134s 45000 52 46 42 29 17 7 0 0 134s 50000 47 42 38 25 16 6 0 0 134s 55000 43 38 34 21 13 4 0 0 134s 60000 36 31 28 18 10 3 0 0 134s 65000 32 28 25 16 9 2 0 0 134s 70000 28 25 23 14 9 2 0 0 134s 75000 23 21 19 12 7 2 0 0 134s 80000 21 19 18 11 7 2 0 0 134s 85000 20 18 17 11 7 2 0 0 134s 90000 17 16 15 10 6 2 0 0 134s 95000 17 16 15 10 6 2 0 0 134s 100000 14 13 12 8 4 1 0 0 134s 120000 10 9 8 5 2 0 0 0 134s 140000 6 6 5 3 1 0 0 0 134s 160000 6 6 5 3 1 0 0 0 134s 180000 6 6 5 3 1 0 0 0 134s 200000 5 5 4 2 1 0 0 0 134s 220000 5 5 4 2 1 0 0 0 134s 240000 3 3 2 2 1 0 0 0 134s 260000 3 3 2 2 1 0 0 0 134s 280000 3 3 2 2 1 0 0 0 134s 300000 3 3 2 2 1 0 0 0 134s 320000 3 3 2 2 1 0 0 0 134s 340000 2 2 2 2 1 0 0 0 134s 360000 1 1 1 1 0 0 0 0 134s 380000 1 1 1 1 0 0 0 0 134s 400000 0 0 0 0 0 0 0 0 134s plotting in the following window: 134s 0 <= Q-score (x-axis) <= 14.0 134s 0 <= length (y-axis) <= 223383 135s 135s pauvre marginplot -f nanotest/reads.fastq.gz -t "my title" --filt_maxlen 30000 136s Keeping reads that satisfy: length >= 0 and meanQual >= 0 and length <= 30000 137s plotting in the following window: 137s 0 <= Q-score (x-axis) <= 14.0 137s 0 <= length (y-axis) <= 29294 138s # Fastq stats for reads.fastq.gz, reads >= 0bp 138s numReads: 300 138s %totalNumReads: 100.00 138s numBasepairs: 2729844 138s %totalBasepairs: 100.00 138s meanLen: 9099.48 138s medianLen: 6204.5 138s minLen: 212 138s maxLen: 29590 138s N50: 15222 138s L50: 61 138s 138s # Fastq stats for reads.fastq.gz, reads >= 1000bp 138s numReads: 278 138s %totalNumReads: 92.67 138s numBasepairs: 2717169 138s %totalBasepairs: 99.54 138s meanLen: 9773.989208633093 138s medianLen: 6910.0 138s minLen: 1009 138s maxLen: 29590 138s N50: 15222 138s L50: 61 138s 138s # Fastq stats for reads.fastq.gz, reads >= 5000bp 138s numReads: 175 138s %totalNumReads: 58.33 138s numBasepairs: 2414744 138s %totalBasepairs: 88.46 138s meanLen: 13798.537142857143 138s medianLen: 12063.0 138s minLen: 5082 138s maxLen: 29590 138s N50: 17307 138s L50: 52 138s 138s # Fastq stats for reads.fastq.gz, reads >= 10000bp 138s numReads: 107 138s %totalNumReads: 35.67 138s numBasepairs: 1935547 138s %totalBasepairs: 70.90 138s meanLen: 18089.22429906542 138s medianLen: 16881.0 138s minLen: 10192 138s maxLen: 29590 138s N50: 20295 138s L50: 39 138s 138s 138s Basepairs >= bin by mean PHRED and length 138s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 138s 0 2729844 2468957 2119643 1556484 858972 393665 11781 0 138s 250 2729407 2468745 2119431 1556272 858760 393453 11781 0 138s 500 2726928 2466658 2118130 1554971 858291 392984 11781 0 138s 750 2721984 2464209 2116192 1553563 857617 392310 11781 0 138s 1000 2717169 2460965 2112948 1550319 855138 390635 11781 0 138s 1500 2707362 2454822 2109268 1546639 852794 390635 11781 0 138s 2000 2672887 2422266 2076712 1519238 838240 387346 11781 0 138s 2500 2641814 2393384 2050243 1503478 829208 382949 11781 0 138s 3000 2609116 2374168 2033904 1489726 826376 382949 11781 0 138s 3500 2564269 2332442 1995335 1454265 797280 370584 11781 0 138s 4000 2512068 2280241 1943134 1409238 778266 370584 11781 0 138s 4500 2462190 2234445 1905756 1392691 769886 362204 11781 0 138s 5000 2414744 2186999 1867774 1364464 750909 357457 11781 0 138s 5500 2362072 2144943 1825718 1343414 745461 352009 6333 0 138s 6000 2305333 2093889 1774664 1292360 722519 340437 6333 0 138s 6500 2236325 2037511 1730586 1254474 703348 327653 0 0 138s 7000 2195737 2003551 1703356 1240708 696434 327653 0 0 138s 7500 2152591 1960405 1667528 1219336 682352 313571 0 0 138s 8000 2106380 1921709 1628832 1188281 658986 305742 0 0 138s 8500 2056889 1888763 1595886 1163795 642742 305742 0 0 138s 9000 2030952 1862826 1578483 1146392 633884 296884 0 0 138s 9500 1974999 1806873 1550171 1136895 624387 296884 0 0 138s 10000 1935547 1767421 1530498 1126915 614407 296884 0 0 138s 11000 1840006 1693127 1467100 1074138 582873 296884 0 0 138s 12000 1736297 1600554 1386518 1027634 547567 273563 0 0 138s 13000 1534978 1424405 1249051 952931 523214 261500 0 0 138s 14000 1453681 1356704 1195131 899011 495787 234073 0 0 138s 15000 1395434 1298457 1136884 840764 451857 219542 0 0 138s 16000 1334255 1252372 1090799 809901 451857 219542 0 0 138s 17000 1217331 1135448 990860 726799 401685 202825 0 0 138s 18000 1146730 1064847 920259 656198 331084 185250 0 0 138s 19000 1072466 1008770 864182 618776 312433 166599 0 0 138s 20000 993686 929990 805391 579331 312433 166599 0 0 138s 21000 870897 827698 723394 518156 251258 126075 0 0 138s 22000 763379 763379 659075 475682 208784 104960 0 0 138s 23000 673728 673728 569424 408210 163731 82719 0 0 138s 24000 627024 627024 522720 361506 163731 82719 0 0 138s 25000 528646 528646 448453 312153 138944 82719 0 0 138s 26000 478213 478213 423121 312153 138944 82719 0 0 138s 27000 372570 372570 343949 259378 86169 56621 0 0 138s 28000 289458 289458 260837 231544 58335 28787 0 0 138s 29000 147115 147115 147115 117822 29548 0 0 0 138s 30000 0 0 0 0 0 0 0 0 138s 138s Number of reads >= bin by mean Phred+Len 138s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 138s 0 300 260 225 169 94 41 2 0 138s 250 298 259 224 168 93 40 2 0 138s 500 292 254 221 165 92 39 2 0 138s 750 284 250 218 163 91 38 2 0 138s 1000 278 246 214 159 88 36 2 0 138s 1500 270 241 211 156 86 36 2 0 138s 2000 251 223 193 141 78 34 2 0 138s 2500 237 210 181 134 74 32 2 0 138s 3000 225 203 175 129 73 32 2 0 138s 3500 211 190 163 118 64 28 2 0 138s 4000 197 176 149 106 59 28 2 0 138s 4500 185 165 140 102 57 26 2 0 138s 5000 175 155 132 96 53 25 2 0 138s 5500 165 147 124 92 52 24 1 0 138s 6000 155 138 115 83 48 22 1 0 138s 6500 144 129 108 77 45 20 0 0 138s 7000 138 124 104 75 44 20 0 0 138s 7500 132 118 99 72 42 18 0 0 138s 8000 126 113 94 68 39 17 0 0 138s 8500 120 109 90 65 37 17 0 0 138s 9000 117 106 88 63 36 16 0 0 138s 9500 111 100 85 62 35 16 0 0 138s 10000 107 96 83 61 34 16 0 0 138s 11000 98 89 77 56 31 16 0 0 138s 12000 89 81 70 52 28 14 0 0 138s 13000 73 67 59 46 26 13 0 0 138s 14000 67 62 55 42 24 11 0 0 138s 15000 63 58 51 38 21 10 0 0 138s 16000 59 55 48 36 21 10 0 0 138s 17000 52 48 42 31 18 9 0 0 138s 18000 48 44 38 27 14 8 0 0 138s 19000 44 41 35 25 13 7 0 0 138s 20000 40 37 32 23 13 7 0 0 138s 21000 34 32 28 20 10 5 0 0 138s 22000 29 29 25 18 8 4 0 0 138s 23000 25 25 21 15 6 3 0 0 138s 24000 23 23 19 13 6 3 0 0 138s 25000 19 19 16 11 5 3 0 0 138s 26000 17 17 15 11 5 3 0 0 138s 27000 13 13 12 9 3 2 0 0 138s 28000 10 10 9 8 2 1 0 0 138s 29000 5 5 5 4 1 0 0 0 138s 30000 0 0 0 0 0 0 0 0 138s 138s pauvre marginplot -f nanotest/reads.fastq.gz -y --filt_minqual 7 --fileform svg 140s Keeping reads that satisfy: length >= 0 and meanQual >= 7.0 140s # Fastq stats for reads.fastq.gz, reads >= 0bp 140s numReads: 371 140s %totalNumReads: 100.00 140s numBasepairs: 8611871 140s %totalBasepairs: 100.00 140s meanLen: 23212.590296495957 140s medianLen: 9390.0 140s minLen: 212 140s maxLen: 393431 140s N50: 60395 140s L50: 36 140s 140s # Fastq stats for reads.fastq.gz, reads >= 1000bp 140s numReads: 349 140s %totalNumReads: 94.07 140s numBasepairs: 8599196 140s %totalBasepairs: 99.85 140s meanLen: 24639.530085959886 140s medianLen: 10585.0 140s minLen: 1009 140s maxLen: 393431 140s N50: 60395 140s L50: 36 140s 140s # Fastq stats for reads.fastq.gz, reads >= 5000bp 140s numReads: 246 140s %totalNumReads: 66.31 140s numBasepairs: 8296771 140s %totalBasepairs: 96.34 140s meanLen: 33726.71138211382 140s medianLen: 17146.0 140s minLen: 5082 140s maxLen: 393431 140s N50: 61111 140s L50: 33 140s 140s # Fastq stats for reads.fastq.gz, reads >= 10000bp 140s numReads: 178 140s %totalNumReads: 47.98 140s numBasepairs: 7817574 140s %totalBasepairs: 90.78 140s meanLen: 43918.95505617977 140s medianLen: 25216.5 140s minLen: 10192 140s maxLen: 393431 140s N50: 67193 140s L50: 30 140s 140s 140s Basepairs >= bin by mean PHRED and length 140s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 140s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 140s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 140s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 140s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 140s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 140s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 140s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 140s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 140s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 140s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 140s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 140s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 140s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 140s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 140s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 140s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 140s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 140s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 140s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 140s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 140s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 140s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 140s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 140s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 140s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 140s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 140s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 140s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 140s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 140s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 140s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 140s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 140s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 140s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 140s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 140s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 140s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 140s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 140s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 140s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 140s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 140s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 140s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 140s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 140s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 140s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 140s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 140s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 140s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 140s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 140s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 140s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 140s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 140s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 140s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 140s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 140s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 140s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 140s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 140s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 140s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 140s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 140s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 140s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 140s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 140s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 140s 140000 1699582 1699582 1378920 930176 341725 0 0 0 140s 160000 1699582 1699582 1378920 930176 341725 0 0 0 140s 180000 1699582 1699582 1378920 930176 341725 0 0 0 140s 200000 1504562 1504562 1183900 735156 341725 0 0 0 140s 220000 1504562 1504562 1183900 735156 341725 0 0 0 140s 240000 1055818 1055818 735156 735156 341725 0 0 0 140s 260000 1055818 1055818 735156 735156 341725 0 0 0 140s 280000 1055818 1055818 735156 735156 341725 0 0 0 140s 300000 1055818 1055818 735156 735156 341725 0 0 0 140s 320000 1055818 1055818 735156 735156 341725 0 0 0 140s 340000 735156 735156 735156 735156 341725 0 0 0 140s 360000 393431 393431 393431 393431 0 0 0 0 140s 380000 393431 393431 393431 393431 0 0 0 0 140s 400000 0 0 0 0 0 0 0 0 140s 140s Number of reads >= bin by mean Phred+Len 140s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 140s 0 371 321 277 207 114 49 2 0 140s 250 369 320 276 206 113 48 2 0 140s 500 363 315 273 203 112 47 2 0 140s 750 355 311 270 201 111 46 2 0 140s 1000 349 307 266 197 108 44 2 0 140s 1500 341 302 263 194 106 44 2 0 140s 2000 322 284 245 179 98 42 2 0 140s 2500 308 271 233 172 94 40 2 0 140s 3000 296 264 227 167 93 40 2 0 140s 3500 282 251 215 156 84 36 2 0 140s 4000 268 237 201 144 79 36 2 0 140s 4500 256 226 192 140 77 34 2 0 140s 5000 246 216 184 134 73 33 2 0 140s 5500 236 208 176 130 72 32 1 0 140s 6000 226 199 167 121 68 30 1 0 140s 6500 215 190 160 115 65 28 0 0 140s 7000 209 185 156 113 64 28 0 0 140s 7500 203 179 151 110 62 26 0 0 140s 8000 197 174 146 106 59 25 0 0 140s 8500 191 170 142 103 57 25 0 0 140s 9000 188 167 140 101 56 24 0 0 140s 9500 182 161 137 100 55 24 0 0 140s 10000 178 157 135 99 54 24 0 0 140s 11000 169 150 129 94 51 24 0 0 140s 12000 160 142 122 90 48 22 0 0 140s 13000 144 128 111 84 46 21 0 0 140s 14000 138 123 107 80 44 19 0 0 140s 15000 134 119 103 76 41 18 0 0 140s 16000 130 116 100 74 41 18 0 0 140s 17000 123 109 94 69 38 17 0 0 140s 18000 119 105 90 65 34 16 0 0 140s 19000 115 102 87 63 33 15 0 0 140s 20000 111 98 84 61 33 15 0 0 140s 21000 105 93 80 58 30 13 0 0 140s 22000 100 90 77 56 28 12 0 0 140s 23000 96 86 73 53 26 11 0 0 140s 24000 94 84 71 51 26 11 0 0 140s 25000 90 80 68 49 25 11 0 0 140s 26000 88 78 67 49 25 11 0 0 140s 27000 84 74 64 47 23 10 0 0 140s 28000 81 71 61 46 22 9 0 0 140s 29000 76 66 57 42 21 8 0 0 140s 30000 71 61 52 38 20 8 0 0 140s 31000 69 59 50 36 19 7 0 0 140s 32000 67 57 48 34 18 7 0 0 140s 33000 66 56 47 33 18 7 0 0 140s 34000 66 56 47 33 18 7 0 0 140s 35000 64 55 46 32 18 7 0 0 140s 36000 61 52 45 31 18 7 0 0 140s 37000 58 49 44 30 17 7 0 0 140s 38000 58 49 44 30 17 7 0 0 140s 39000 57 49 44 30 17 7 0 0 140s 40000 57 49 44 30 17 7 0 0 140s 45000 52 46 42 29 17 7 0 0 140s 50000 47 42 38 25 16 6 0 0 140s 55000 43 38 34 21 13 4 0 0 140s 60000 36 31 28 18 10 3 0 0 140s 65000 32 28 25 16 9 2 0 0 140s 70000 28 25 23 14 9 2 0 0 140s 75000 23 21 19 12 7 2 0 0 140s 80000 21 19 18 11 7 2 0 0 140s 85000 20 18 17 11 7 2 0 0 140s 90000 17 16 15 10 6 2 0 0 140s 95000 17 16 15 10 6 2 0 0 140s 100000 14 13 12 8 4 1 0 0 140s 120000 10 9 8 5 2 0 0 0 140s 140000 6 6 5 3 1 0 0 0 140s 160000 6 6 5 3 1 0 0 0 140s 180000 6 6 5 3 1 0 0 0 140s 200000 5 5 4 2 1 0 0 0 140s 220000 5 5 4 2 1 0 0 0 140s 240000 3 3 2 2 1 0 0 0 140s 260000 3 3 2 2 1 0 0 0 140s 280000 3 3 2 2 1 0 0 0 140s 300000 3 3 2 2 1 0 0 0 140s 320000 3 3 2 2 1 0 0 0 140s 340000 2 2 2 2 1 0 0 0 140s 360000 1 1 1 1 0 0 0 0 140s 380000 1 1 1 1 0 0 0 0 140s 400000 0 0 0 0 0 0 0 0 141s plotting in the following window: 141s 0 <= Q-score (x-axis) <= 14.0 141s 0 <= length (y-axis) <= 223383 141s 141s 141s pauvre stats -h 141s usage: pauvre stats [-h] [-q] [-f FASTQ] [-H] [--filt_maxlen FILT_MAXLEN] 141s [--filt_maxqual FILT_MAXQUAL] [--filt_minlen FILT_MINLEN] 141s [--filt_minqual FILT_MINQUAL] 141s 141s options: 141s -h, --help show this help message and exit 141s -q, --quiet Do not output warnings to stderr 141s -f FASTQ, --fastq FASTQ 141s The input FASTQ file. 141s -H, --histogram Make a histogram of the read lengths and saves it to a 141s new file 141s --filt_maxlen FILT_MAXLEN 141s This sets the max read length filter reads. 141s --filt_maxqual FILT_MAXQUAL 141s This sets the max mean read quality to filter reads. 141s --filt_minlen FILT_MINLEN 141s This sets the min read length to filter reads. 141s --filt_minqual FILT_MINQUAL 141s This sets the min mean read quality to filter reads. 141s pauvre stats -f nanotest/reads.fastq.gz 143s # Fastq stats for reads.fastq.gz, reads >= 0bp 143s numReads: 371 143s %totalNumReads: 100.00 143s numBasepairs: 8611871 143s %totalBasepairs: 100.00 143s meanLen: 23212.590296495957 143s medianLen: 9390.0 143s minLen: 212 143s maxLen: 393431 143s N50: 60395 143s L50: 36 143s 143s # Fastq stats for reads.fastq.gz, reads >= 1000bp 143s numReads: 349 143s %totalNumReads: 94.07 143s numBasepairs: 8599196 143s %totalBasepairs: 99.85 143s meanLen: 24639.530085959886 143s medianLen: 10585.0 143s minLen: 1009 143s maxLen: 393431 143s N50: 60395 143s L50: 36 143s 143s # Fastq stats for reads.fastq.gz, reads >= 5000bp 143s numReads: 246 143s %totalNumReads: 66.31 143s numBasepairs: 8296771 143s %totalBasepairs: 96.34 143s meanLen: 33726.71138211382 143s medianLen: 17146.0 143s minLen: 5082 143s maxLen: 393431 143s N50: 61111 143s L50: 33 143s 143s # Fastq stats for reads.fastq.gz, reads >= 10000bp 143s numReads: 178 143s %totalNumReads: 47.98 143s numBasepairs: 7817574 143s %totalBasepairs: 90.78 143s meanLen: 43918.95505617977 143s medianLen: 25216.5 143s minLen: 10192 143s maxLen: 393431 143s N50: 67193 143s L50: 30 143s 143s 143s Basepairs >= bin by mean PHRED and length 143s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 143s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 143s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 143s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 143s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 143s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 143s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 143s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 143s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 143s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 143s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 143s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 143s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 143s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 143s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 143s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 143s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 143s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 143s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 143s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 143s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 143s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 143s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 143s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 143s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 143s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 143s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 143s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 143s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 143s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 143s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 143s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 143s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 143s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 143s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 143s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 143s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 143s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 143s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 143s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 143s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 143s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 143s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 143s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 143s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 143s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 143s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 143s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 143s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 143s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 143s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 143s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 143s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 143s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 143s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 143s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 143s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 143s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 143s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 143s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 143s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 143s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 143s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 143s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 143s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 143s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 143s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 143s 140000 1699582 1699582 1378920 930176 341725 0 0 0 143s 160000 1699582 1699582 1378920 930176 341725 0 0 0 143s 180000 1699582 1699582 1378920 930176 341725 0 0 0 143s 200000 1504562 1504562 1183900 735156 341725 0 0 0 143s 220000 1504562 1504562 1183900 735156 341725 0 0 0 143s 240000 1055818 1055818 735156 735156 341725 0 0 0 143s 260000 1055818 1055818 735156 735156 341725 0 0 0 143s 280000 1055818 1055818 735156 735156 341725 0 0 0 143s 300000 1055818 1055818 735156 735156 341725 0 0 0 143s 320000 1055818 1055818 735156 735156 341725 0 0 0 143s 340000 735156 735156 735156 735156 341725 0 0 0 143s 360000 393431 393431 393431 393431 0 0 0 0 143s 380000 393431 393431 393431 393431 0 0 0 0 143s 400000 0 0 0 0 0 0 0 0 143s 143s Number of reads >= bin by mean Phred+Len 143s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 143s 0 371 321 277 207 114 49 2 0 143s 250 369 320 276 206 113 48 2 0 143s 500 363 315 273 203 112 47 2 0 143s 750 355 311 270 201 111 46 2 0 143s 1000 349 307 266 197 108 44 2 0 143s 1500 341 302 263 194 106 44 2 0 143s 2000 322 284 245 179 98 42 2 0 143s 2500 308 271 233 172 94 40 2 0 143s 3000 296 264 227 167 93 40 2 0 143s 3500 282 251 215 156 84 36 2 0 143s 4000 268 237 201 144 79 36 2 0 143s 4500 256 226 192 140 77 34 2 0 143s 5000 246 216 184 134 73 33 2 0 143s 5500 236 208 176 130 72 32 1 0 143s 6000 226 199 167 121 68 30 1 0 143s 6500 215 190 160 115 65 28 0 0 143s 7000 209 185 156 113 64 28 0 0 143s 7500 203 179 151 110 62 26 0 0 143s 8000 197 174 146 106 59 25 0 0 143s 8500 191 170 142 103 57 25 0 0 143s 9000 188 167 140 101 56 24 0 0 143s 9500 182 161 137 100 55 24 0 0 143s 10000 178 157 135 99 54 24 0 0 143s 11000 169 150 129 94 51 24 0 0 143s 12000 160 142 122 90 48 22 0 0 143s 13000 144 128 111 84 46 21 0 0 143s 14000 138 123 107 80 44 19 0 0 143s 15000 134 119 103 76 41 18 0 0 143s 16000 130 116 100 74 41 18 0 0 143s 17000 123 109 94 69 38 17 0 0 143s 18000 119 105 90 65 34 16 0 0 143s 19000 115 102 87 63 33 15 0 0 143s 20000 111 98 84 61 33 15 0 0 143s 21000 105 93 80 58 30 13 0 0 143s 22000 100 90 77 56 28 12 0 0 143s 23000 96 86 73 53 26 11 0 0 143s 24000 94 84 71 51 26 11 0 0 143s 25000 90 80 68 49 25 11 0 0 143s 26000 88 78 67 49 25 11 0 0 143s 27000 84 74 64 47 23 10 0 0 143s 28000 81 71 61 46 22 9 0 0 143s 29000 76 66 57 42 21 8 0 0 143s 30000 71 61 52 38 20 8 0 0 143s 31000 69 59 50 36 19 7 0 0 143s 32000 67 57 48 34 18 7 0 0 143s 33000 66 56 47 33 18 7 0 0 143s 34000 66 56 47 33 18 7 0 0 143s 35000 64 55 46 32 18 7 0 0 143s 36000 61 52 45 31 18 7 0 0 143s 37000 58 49 44 30 17 7 0 0 143s 38000 58 49 44 30 17 7 0 0 143s 39000 57 49 44 30 17 7 0 0 143s 40000 57 49 44 30 17 7 0 0 143s 45000 52 46 42 29 17 7 0 0 143s 50000 47 42 38 25 16 6 0 0 143s 55000 43 38 34 21 13 4 0 0 143s 60000 36 31 28 18 10 3 0 0 143s 65000 32 28 25 16 9 2 0 0 143s 70000 28 25 23 14 9 2 0 0 143s 75000 23 21 19 12 7 2 0 0 143s 80000 21 19 18 11 7 2 0 0 143s 85000 20 18 17 11 7 2 0 0 143s 90000 17 16 15 10 6 2 0 0 143s 95000 17 16 15 10 6 2 0 0 143s 100000 14 13 12 8 4 1 0 0 143s 120000 10 9 8 5 2 0 0 0 143s 140000 6 6 5 3 1 0 0 0 143s 160000 6 6 5 3 1 0 0 0 143s 180000 6 6 5 3 1 0 0 0 143s 200000 5 5 4 2 1 0 0 0 143s 220000 5 5 4 2 1 0 0 0 143s 240000 3 3 2 2 1 0 0 0 143s 260000 3 3 2 2 1 0 0 0 143s 280000 3 3 2 2 1 0 0 0 143s 300000 3 3 2 2 1 0 0 0 143s 320000 3 3 2 2 1 0 0 0 143s 340000 2 2 2 2 1 0 0 0 143s 360000 1 1 1 1 0 0 0 0 143s 380000 1 1 1 1 0 0 0 0 143s 400000 0 0 0 0 0 0 0 0 143s 143s pauvre stats -f nanotest/reads.fastq.gz -H --filt_maxqual 12 145s # Fastq stats for reads.fastq.gz, reads >= 0bp 145s numReads: 371 145s %totalNumReads: 100.00 145s numBasepairs: 8611871 145s %totalBasepairs: 100.00 145s meanLen: 23212.590296495957 145s medianLen: 9390.0 145s minLen: 212 145s maxLen: 393431 145s N50: 60395 145s L50: 36 145s 145s # Fastq stats for reads.fastq.gz, reads >= 1000bp 145s numReads: 349 145s %totalNumReads: 94.07 145s numBasepairs: 8599196 145s %totalBasepairs: 99.85 145s meanLen: 24639.530085959886 145s medianLen: 10585.0 145s minLen: 1009 145s maxLen: 393431 145s N50: 60395 145s L50: 36 145s 145s # Fastq stats for reads.fastq.gz, reads >= 5000bp 145s numReads: 246 145s %totalNumReads: 66.31 145s numBasepairs: 8296771 145s %totalBasepairs: 96.34 145s meanLen: 33726.71138211382 145s medianLen: 17146.0 145s minLen: 5082 145s maxLen: 393431 145s N50: 61111 145s L50: 33 145s 145s # Fastq stats for reads.fastq.gz, reads >= 10000bp 145s numReads: 178 145s %totalNumReads: 47.98 145s numBasepairs: 7817574 145s %totalBasepairs: 90.78 145s meanLen: 43918.95505617977 145s medianLen: 25216.5 145s minLen: 10192 145s maxLen: 393431 145s N50: 67193 145s L50: 30 145s 145s 145s Basepairs >= bin by mean PHRED and length 145s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 145s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 145s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 145s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 145s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 145s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 145s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 145s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 145s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 145s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 145s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 145s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 145s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 145s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 145s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 145s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 145s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 145s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 145s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 145s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 145s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 145s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 145s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 145s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 145s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 145s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 145s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 145s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 145s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 145s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 145s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 145s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 145s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 145s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 145s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 145s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 145s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 145s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 145s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 145s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 145s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 145s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 145s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 145s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 145s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 145s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 145s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 145s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 145s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 145s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 145s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 145s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 145s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 145s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 145s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 145s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 145s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 145s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 145s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 145s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 145s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 145s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 145s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 145s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 145s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 145s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 145s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 145s 140000 1699582 1699582 1378920 930176 341725 0 0 0 145s 160000 1699582 1699582 1378920 930176 341725 0 0 0 145s 180000 1699582 1699582 1378920 930176 341725 0 0 0 145s 200000 1504562 1504562 1183900 735156 341725 0 0 0 145s 220000 1504562 1504562 1183900 735156 341725 0 0 0 145s 240000 1055818 1055818 735156 735156 341725 0 0 0 145s 260000 1055818 1055818 735156 735156 341725 0 0 0 145s 280000 1055818 1055818 735156 735156 341725 0 0 0 145s 300000 1055818 1055818 735156 735156 341725 0 0 0 145s 320000 1055818 1055818 735156 735156 341725 0 0 0 145s 340000 735156 735156 735156 735156 341725 0 0 0 145s 360000 393431 393431 393431 393431 0 0 0 0 145s 380000 393431 393431 393431 393431 0 0 0 0 145s 400000 0 0 0 0 0 0 0 0 145s 145s Number of reads >= bin by mean Phred+Len 145s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 145s 0 371 321 277 207 114 49 2 0 145s 250 369 320 276 206 113 48 2 0 145s 500 363 315 273 203 112 47 2 0 145s 750 355 311 270 201 111 46 2 0 145s 1000 349 307 266 197 108 44 2 0 145s 1500 341 302 263 194 106 44 2 0 145s 2000 322 284 245 179 98 42 2 0 145s 2500 308 271 233 172 94 40 2 0 145s 3000 296 264 227 167 93 40 2 0 145s 3500 282 251 215 156 84 36 2 0 145s 4000 268 237 201 144 79 36 2 0 145s 4500 256 226 192 140 77 34 2 0 145s 5000 246 216 184 134 73 33 2 0 145s 5500 236 208 176 130 72 32 1 0 145s 6000 226 199 167 121 68 30 1 0 145s 6500 215 190 160 115 65 28 0 0 145s 7000 209 185 156 113 64 28 0 0 145s 7500 203 179 151 110 62 26 0 0 145s 8000 197 174 146 106 59 25 0 0 145s 8500 191 170 142 103 57 25 0 0 145s 9000 188 167 140 101 56 24 0 0 145s 9500 182 161 137 100 55 24 0 0 145s 10000 178 157 135 99 54 24 0 0 145s 11000 169 150 129 94 51 24 0 0 145s 12000 160 142 122 90 48 22 0 0 145s 13000 144 128 111 84 46 21 0 0 145s 14000 138 123 107 80 44 19 0 0 145s 15000 134 119 103 76 41 18 0 0 145s 16000 130 116 100 74 41 18 0 0 145s 17000 123 109 94 69 38 17 0 0 145s 18000 119 105 90 65 34 16 0 0 145s 19000 115 102 87 63 33 15 0 0 145s 20000 111 98 84 61 33 15 0 0 145s 21000 105 93 80 58 30 13 0 0 145s 22000 100 90 77 56 28 12 0 0 145s 23000 96 86 73 53 26 11 0 0 145s 24000 94 84 71 51 26 11 0 0 145s 25000 90 80 68 49 25 11 0 0 145s 26000 88 78 67 49 25 11 0 0 145s 27000 84 74 64 47 23 10 0 0 145s 28000 81 71 61 46 22 9 0 0 145s 29000 76 66 57 42 21 8 0 0 145s 30000 71 61 52 38 20 8 0 0 145s 31000 69 59 50 36 19 7 0 0 145s 32000 67 57 48 34 18 7 0 0 145s 33000 66 56 47 33 18 7 0 0 145s 34000 66 56 47 33 18 7 0 0 145s 35000 64 55 46 32 18 7 0 0 145s 36000 61 52 45 31 18 7 0 0 145s 37000 58 49 44 30 17 7 0 0 145s 38000 58 49 44 30 17 7 0 0 145s 39000 57 49 44 30 17 7 0 0 145s 40000 57 49 44 30 17 7 0 0 145s 45000 52 46 42 29 17 7 0 0 145s 50000 47 42 38 25 16 6 0 0 145s 55000 43 38 34 21 13 4 0 0 145s 60000 36 31 28 18 10 3 0 0 145s 65000 32 28 25 16 9 2 0 0 145s 70000 28 25 23 14 9 2 0 0 145s 75000 23 21 19 12 7 2 0 0 145s 80000 21 19 18 11 7 2 0 0 145s 85000 20 18 17 11 7 2 0 0 145s 90000 17 16 15 10 6 2 0 0 145s 95000 17 16 15 10 6 2 0 0 145s 100000 14 13 12 8 4 1 0 0 145s 120000 10 9 8 5 2 0 0 0 145s 140000 6 6 5 3 1 0 0 0 145s 160000 6 6 5 3 1 0 0 0 145s 180000 6 6 5 3 1 0 0 0 145s 200000 5 5 4 2 1 0 0 0 145s 220000 5 5 4 2 1 0 0 0 145s 240000 3 3 2 2 1 0 0 0 145s 260000 3 3 2 2 1 0 0 0 145s 280000 3 3 2 2 1 0 0 0 145s 300000 3 3 2 2 1 0 0 0 145s 320000 3 3 2 2 1 0 0 0 145s 340000 2 2 2 2 1 0 0 0 145s 360000 1 1 1 1 0 0 0 0 145s 380000 1 1 1 1 0 0 0 0 145s 400000 0 0 0 0 0 0 0 0 145s 146s autopkgtest [23:17:22]: test run-unit-test: -----------------------] 146s autopkgtest [23:17:22]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 146s run-unit-test PASS 147s autopkgtest [23:17:23]: @@@@@@@@@@@@@@@@@@@@ summary 147s run-unit-test PASS 151s nova [W] Skipping flock for amd64 151s Creating nova instance adt-plucky-i386-python-pauvre-20241115-220449-juju-7f2275-prod-proposed-migration-environment-20-208f7a77-781f-40c2-b9cd-300f7795ecc3 from image adt/ubuntu-plucky-amd64-server-20241115.img (UUID 9bb4dd9c-454f-45da-a125-77b9d27ed145)...