0s autopkgtest [22:06:11]: starting date and time: 2025-01-16 22:06:11+0000
  0s autopkgtest [22:06:11]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [22:06:11]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bmvf5t3f/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:xorg-server --apt-upgrade python-mrcfile --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=xorg-server/2:21.1.15-2ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-14.secgroup --name adt-plucky-i386-python-mrcfile-20250116-213108-juju-7f2275-prod-proposed-migration-environment-15-ef6992dd-30f9-4217-b078-db9547b52208 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 74s autopkgtest [22:07:25]: testbed dpkg architecture: amd64
 74s autopkgtest [22:07:25]: testbed apt version: 2.9.18
 75s autopkgtest [22:07:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 75s autopkgtest [22:07:26]: testbed release detected to be: None
 75s autopkgtest [22:07:26]: updating testbed package index (apt update)
 76s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 76s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 76s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 76s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 76s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.4 kB]
 76s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B]
 76s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [168 kB]
 76s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [923 kB]
 76s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [221 kB]
 76s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [323 kB]
 76s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2408 B]
 76s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.1 kB]
 76s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [482 kB]
 76s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [1110 kB]
 77s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [26.7 kB]
 77s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [7288 B]
 77s Fetched 3403 kB in 1s (3543 kB/s)
 77s Reading package lists...
 78s Reading package lists...
 78s Building dependency tree...
 78s Reading state information...
 79s Calculating upgrade...
 79s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 79s Reading package lists...
 79s Building dependency tree...
 79s Reading state information...
 79s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 79s autopkgtest [22:07:30]: upgrading testbed (apt dist-upgrade and autopurge)
 79s Reading package lists...
 80s Building dependency tree...
 80s Reading state information...
 80s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 80s Starting 2 pkgProblemResolver with broken count: 0
 80s Done
 80s Entering ResolveByKeep
 81s 
 81s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 81s Reading package lists...
 81s Building dependency tree...
 81s Reading state information...
 81s Starting pkgProblemResolver with broken count: 0
 82s Starting 2 pkgProblemResolver with broken count: 0
 82s Done
 82s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 84s autopkgtest [22:07:35]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024
 85s autopkgtest [22:07:36]: @@@@@@@@@@@@@@@@@@@@ apt-source python-mrcfile
 91s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-mrcfile 1.5.3-3 (dsc) [2131 B]
 91s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-mrcfile 1.5.3-3 (tar) [148 MB]
 91s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-mrcfile 1.5.3-3 (diff) [5600 B]
 91s gpgv: Signature made Mon Sep 30 06:51:05 2024 UTC
 91s gpgv:                using RSA key B415360F591EB6DD73AFFB83D30DECD2599322FC
 91s gpgv: Can't check signature: No public key
 91s dpkg-source: warning: cannot verify inline signature for ./python-mrcfile_1.5.3-3.dsc: no acceptable signature found
 93s autopkgtest [22:07:44]: testing package python-mrcfile version 1.5.3-3
 93s autopkgtest [22:07:44]: build not needed
100s autopkgtest [22:07:51]: test command1: preparing testbed
100s Reading package lists...
100s Building dependency tree...
100s Reading state information...
101s Starting pkgProblemResolver with broken count: 0
101s Starting 2 pkgProblemResolver with broken count: 0
101s Done
101s The following NEW packages will be installed:
101s   autoconf automake autopoint autotools-dev cpp cpp-14 cpp-14-x86-64-linux-gnu
101s   cpp-x86-64-linux-gnu debhelper debugedit dh-autoreconf
101s   dh-strip-nondeterminism dwz fonts-font-awesome fonts-lato gcc gcc-14
101s   gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian
101s   libarchive-zip-perl libasan8 libblas3 libcc1-0 libdebhelper-perl
101s   libdecor-0-0 libdrm-intel1 libdrm-radeon1 libegl-mesa0 libegl1
101s   libfile-stripnondeterminism-perl libfontenc1 libgbm1 libgcc-14-dev
101s   libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libgles2 libglvnd0
101s   libglx-mesa0 libglx0 libgomp1 libhwasan0 libice6 libisl23 libitm1
101s   libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblsan0 libmpc3
101s   libpciaccess0 libpixman-1-0 libquadmath0 libsm6 libtool libtsan2 libubsan1
101s   libvulkan1 libwayland-client0 libwayland-egl1 libwayland-server0 libx11-xcb1
101s   libxaw7 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0
101s   libxcb-randr0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb-xkb1 libxfixes3
101s   libxfont2 libxkbcommon-x11-0 libxkbfile1 libxmu6 libxpm4 libxrandr2
101s   libxrender1 libxshmfence1 libxt6t64 libxxf86vm1 m4 mesa-libgallium
101s   mesa-utils mesa-utils-bin po-debconf python3-mrcfile python3-numpy
101s   sphinx-rtd-theme-common x11-common x11-xkb-utils xserver-common xvfb
101s 0 upgraded, 99 newly installed, 0 to remove and 0 not upgraded.
101s Need to get 85.1 MB of archives.
101s After this operation, 302 MB of additional disk space will be used.
101s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-lato all 2.015-1 [2781 kB]
102s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB]
102s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB]
102s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB]
102s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB]
102s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-3 [616 kB]
102s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB]
102s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB]
102s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-12ubuntu1 [11.9 MB]
102s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-12ubuntu1 [1036 B]
102s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B]
102s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB]
102s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB]
102s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-12ubuntu1 [47.6 kB]
102s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-12ubuntu1 [148 kB]
102s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-12ubuntu1 [28.9 kB]
102s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-12ubuntu1 [2998 kB]
103s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-12ubuntu1 [1317 kB]
103s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-12ubuntu1 [2732 kB]
103s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-12ubuntu1 [1177 kB]
103s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-12ubuntu1 [1634 kB]
103s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-12ubuntu1 [153 kB]
103s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-12ubuntu1 [2815 kB]
103s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-12ubuntu1 [23.3 MB]
103s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-12ubuntu1 [533 kB]
103s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B]
103s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B]
103s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.4.7-8 [166 kB]
103s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB]
103s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB]
104s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB]
104s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B]
104s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB]
104s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB]
104s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-3 [1025 kB]
104s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
104s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB]
104s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB]
104s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
104s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB]
104s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-client0 amd64 1.23.0-1 [27.1 kB]
104s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libdecor-0-0 amd64 0.2.2-2 [16.8 kB]
104s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB]
104s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-intel1 amd64 2.4.123-1 [68.8 kB]
104s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libdrm-radeon1 amd64 2.4.123-1 [25.3 kB]
104s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-server0 amd64 1.23.0-1 [35.1 kB]
104s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB]
104s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libglapi-mesa amd64 24.2.8-1ubuntu1 [42.5 kB]
104s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B]
104s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri2-0 amd64 1.17.0-2 [7222 B]
104s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B]
104s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B]
104s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B]
104s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB]
104s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libxshmfence1 amd64 1.3-1build5 [4764 B]
104s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 mesa-libgallium amd64 24.2.8-1ubuntu1 [11.5 MB]
104s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libgbm1 amd64 24.2.8-1ubuntu1 [32.2 kB]
104s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
104s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl-mesa0 amd64 24.2.8-1ubuntu1 [145 kB]
104s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB]
104s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-12ubuntu1 [909 kB]
104s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libvulkan1 amd64 1.3.296.0-1 [143 kB]
104s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1-mesa-dri amd64 24.2.8-1ubuntu1 [34.7 kB]
104s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB]
104s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libxfixes3 amd64 1:6.0.0-2build1 [10.8 kB]
104s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B]
104s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx-mesa0 amd64 24.2.8-1ubuntu1 [162 kB]
104s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
104s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB]
104s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
104s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
104s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 8.1.3-3 [30.9 kB]
104s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB]
104s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
104s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB]
104s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libwayland-egl1 amd64 1.23.0-1 [5662 B]
104s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
104s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB]
104s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB]
104s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB]
104s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-xkb1 amd64 1.17.0-2 [32.3 kB]
104s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 libxfont2 amd64 1:2.0.6-1build1 [93.0 kB]
104s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libxkbcommon-x11-0 amd64 1.7.0-2 [15.2 kB]
104s Get:84 http://ftpmaster.internal/ubuntu plucky/main amd64 libxkbfile1 amd64 1:1.1.0-1build4 [70.0 kB]
104s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
104s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrandr2 amd64 2:1.5.4-1 [19.6 kB]
104s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB]
104s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libegl1 amd64 1.7.0-1build1 [28.7 kB]
104s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB]
104s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB]
104s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libgles2 amd64 1.7.0-1build1 [17.1 kB]
105s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 mesa-utils-bin amd64 9.0.0-2 [164 kB]
105s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [5319 kB]
105s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-1 [1014 kB]
105s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mrcfile all 1.5.3-3 [114 kB]
105s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-xkb-utils amd64 7.7+9 [169 kB]
105s Get:97 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 xserver-common all 2:21.1.15-2ubuntu2 [34.0 kB]
105s Get:98 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 xvfb amd64 2:21.1.15-2ubuntu2 [965 kB]
105s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 mesa-utils amd64 9.0.0-2 [1051 kB]
105s Fetched 85.1 MB in 4s (21.7 MB/s)
105s Selecting previously unselected package fonts-lato.
106s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 75824 files and directories currently installed.)
106s Preparing to unpack .../00-fonts-lato_2.015-1_all.deb ...
106s Unpacking fonts-lato (2.015-1) ...
106s Selecting previously unselected package m4.
106s Preparing to unpack .../01-m4_1.4.19-4build1_amd64.deb ...
106s Unpacking m4 (1.4.19-4build1) ...
106s Selecting previously unselected package autoconf.
106s Preparing to unpack .../02-autoconf_2.72-3_all.deb ...
106s Unpacking autoconf (2.72-3) ...
106s Selecting previously unselected package autotools-dev.
106s Preparing to unpack .../03-autotools-dev_20220109.1_all.deb ...
106s Unpacking autotools-dev (20220109.1) ...
106s Selecting previously unselected package automake.
106s Preparing to unpack .../04-automake_1%3a1.16.5-1.3ubuntu1_all.deb ...
106s Unpacking automake (1:1.16.5-1.3ubuntu1) ...
106s Selecting previously unselected package autopoint.
106s Preparing to unpack .../05-autopoint_0.22.5-3_all.deb ...
106s Unpacking autopoint (0.22.5-3) ...
106s Selecting previously unselected package libisl23:amd64.
106s Preparing to unpack .../06-libisl23_0.27-1_amd64.deb ...
106s Unpacking libisl23:amd64 (0.27-1) ...
106s Selecting previously unselected package libmpc3:amd64.
106s Preparing to unpack .../07-libmpc3_1.3.1-1build2_amd64.deb ...
106s Unpacking libmpc3:amd64 (1.3.1-1build2) ...
106s Selecting previously unselected package cpp-14-x86-64-linux-gnu.
106s Preparing to unpack .../08-cpp-14-x86-64-linux-gnu_14.2.0-12ubuntu1_amd64.deb ...
106s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-12ubuntu1) ...
106s Selecting previously unselected package cpp-14.
106s Preparing to unpack .../09-cpp-14_14.2.0-12ubuntu1_amd64.deb ...
106s Unpacking cpp-14 (14.2.0-12ubuntu1) ...
106s Selecting previously unselected package cpp-x86-64-linux-gnu.
106s Preparing to unpack .../10-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ...
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106s Selecting previously unselected package cpp.
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106s Selecting previously unselected package libcc1-0:amd64.
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106s Selecting previously unselected package libgomp1:amd64.
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106s Selecting previously unselected package libitm1:amd64.
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106s Selecting previously unselected package libasan8:amd64.
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107s Selecting previously unselected package libquadmath0:amd64.
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107s Selecting previously unselected package libgcc-14-dev:amd64.
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107s Selecting previously unselected package gcc-14-x86-64-linux-gnu.
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107s Selecting previously unselected package gcc-x86-64-linux-gnu.
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107s Selecting previously unselected package gcc.
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107s Selecting previously unselected package libtool.
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107s Selecting previously unselected package dh-autoreconf.
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107s Selecting previously unselected package libarchive-zip-perl.
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107s Selecting previously unselected package libfile-stripnondeterminism-perl.
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107s Selecting previously unselected package dh-strip-nondeterminism.
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107s Selecting previously unselected package debugedit.
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107s Selecting previously unselected package dwz.
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107s Selecting previously unselected package gettext.
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107s Selecting previously unselected package intltool-debian.
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107s Selecting previously unselected package po-debconf.
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107s Selecting previously unselected package debhelper.
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107s Selecting previously unselected package fonts-font-awesome.
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107s Selecting previously unselected package libblas3:amd64.
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108s Selecting previously unselected package libwayland-client0:amd64.
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108s Unpacking libwayland-client0:amd64 (1.23.0-1) ...
108s Selecting previously unselected package libdecor-0-0:amd64.
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108s Selecting previously unselected package libpciaccess0:amd64.
108s Preparing to unpack .../42-libpciaccess0_0.17-3build1_amd64.deb ...
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108s Selecting previously unselected package libdrm-intel1:amd64.
108s Preparing to unpack .../43-libdrm-intel1_2.4.123-1_amd64.deb ...
108s Unpacking libdrm-intel1:amd64 (2.4.123-1) ...
108s Selecting previously unselected package libdrm-radeon1:amd64.
108s Preparing to unpack .../44-libdrm-radeon1_2.4.123-1_amd64.deb ...
108s Unpacking libdrm-radeon1:amd64 (2.4.123-1) ...
108s Selecting previously unselected package libwayland-server0:amd64.
108s Preparing to unpack .../45-libwayland-server0_1.23.0-1_amd64.deb ...
108s Unpacking libwayland-server0:amd64 (1.23.0-1) ...
108s Selecting previously unselected package libxcb-randr0:amd64.
108s Preparing to unpack .../46-libxcb-randr0_1.17.0-2_amd64.deb ...
108s Unpacking libxcb-randr0:amd64 (1.17.0-2) ...
108s Selecting previously unselected package libglapi-mesa:amd64.
108s Preparing to unpack .../47-libglapi-mesa_24.2.8-1ubuntu1_amd64.deb ...
108s Unpacking libglapi-mesa:amd64 (24.2.8-1ubuntu1) ...
108s Selecting previously unselected package libx11-xcb1:amd64.
108s Preparing to unpack .../48-libx11-xcb1_2%3a1.8.10-2_amd64.deb ...
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108s Selecting previously unselected package libxcb-dri2-0:amd64.
108s Preparing to unpack .../49-libxcb-dri2-0_1.17.0-2_amd64.deb ...
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108s Selecting previously unselected package libxcb-dri3-0:amd64.
108s Preparing to unpack .../50-libxcb-dri3-0_1.17.0-2_amd64.deb ...
108s Unpacking libxcb-dri3-0:amd64 (1.17.0-2) ...
108s Selecting previously unselected package libxcb-present0:amd64.
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108s Unpacking libxcb-present0:amd64 (1.17.0-2) ...
108s Selecting previously unselected package libxcb-sync1:amd64.
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108s Selecting previously unselected package libxcb-xfixes0:amd64.
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108s Unpacking libxcb-xfixes0:amd64 (1.17.0-2) ...
108s Selecting previously unselected package libxshmfence1:amd64.
108s Preparing to unpack .../54-libxshmfence1_1.3-1build5_amd64.deb ...
108s Unpacking libxshmfence1:amd64 (1.3-1build5) ...
108s Selecting previously unselected package mesa-libgallium:amd64.
108s Preparing to unpack .../55-mesa-libgallium_24.2.8-1ubuntu1_amd64.deb ...
108s Unpacking mesa-libgallium:amd64 (24.2.8-1ubuntu1) ...
108s Selecting previously unselected package libgbm1:amd64.
108s Preparing to unpack .../56-libgbm1_24.2.8-1ubuntu1_amd64.deb ...
108s Unpacking libgbm1:amd64 (24.2.8-1ubuntu1) ...
108s Selecting previously unselected package libxcb-shm0:amd64.
108s Preparing to unpack .../57-libxcb-shm0_1.17.0-2_amd64.deb ...
108s Unpacking libxcb-shm0:amd64 (1.17.0-2) ...
108s Selecting previously unselected package libegl-mesa0:amd64.
108s Preparing to unpack .../58-libegl-mesa0_24.2.8-1ubuntu1_amd64.deb ...
108s Unpacking libegl-mesa0:amd64 (24.2.8-1ubuntu1) ...
108s Selecting previously unselected package libfontenc1:amd64.
108s Preparing to unpack .../59-libfontenc1_1%3a1.1.8-1build1_amd64.deb ...
108s Unpacking libfontenc1:amd64 (1:1.1.8-1build1) ...
108s Selecting previously unselected package libgfortran5:amd64.
108s Preparing to unpack .../60-libgfortran5_14.2.0-12ubuntu1_amd64.deb ...
108s Unpacking libgfortran5:amd64 (14.2.0-12ubuntu1) ...
108s Selecting previously unselected package libvulkan1:amd64.
108s Preparing to unpack .../61-libvulkan1_1.3.296.0-1_amd64.deb ...
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108s Selecting previously unselected package libgl1-mesa-dri:amd64.
108s Preparing to unpack .../62-libgl1-mesa-dri_24.2.8-1ubuntu1_amd64.deb ...
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108s Selecting previously unselected package libxcb-glx0:amd64.
108s Preparing to unpack .../63-libxcb-glx0_1.17.0-2_amd64.deb ...
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108s Selecting previously unselected package libxfixes3:amd64.
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108s Selecting previously unselected package libxxf86vm1:amd64.
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108s Selecting previously unselected package libglx-mesa0:amd64.
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108s Selecting previously unselected package x11-common.
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108s Selecting previously unselected package libice6:amd64.
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108s Selecting previously unselected package libjs-jquery.
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109s Selecting previously unselected package liblapack3:amd64.
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109s Selecting previously unselected package libpixman-1-0:amd64.
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109s Selecting previously unselected package libwayland-egl1:amd64.
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109s Selecting previously unselected package libxpm4:amd64.
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109s Selecting previously unselected package libxfont2:amd64.
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109s Setting up libxcb-dri3-0:amd64 (1.17.0-2) ...
109s Setting up libpixman-1-0:amd64 (0.44.0-3) ...
109s Setting up libwayland-server0:amd64 (1.23.0-1) ...
109s Setting up libx11-xcb1:amd64 (2:1.8.10-2) ...
109s Setting up libpciaccess0:amd64 (0.17-3build1) ...
109s Setting up fonts-lato (2.015-1) ...
109s Setting up libxcb-xfixes0:amd64 (1.17.0-2) ...
109s Setting up libxpm4:amd64 (1:3.5.17-1build2) ...
109s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ...
109s Setting up libarchive-zip-perl (1.68-1) ...
109s Setting up libdrm-radeon1:amd64 (2.4.123-1) ...
109s Setting up libglvnd0:amd64 (1.7.0-1build1) ...
109s Setting up libxcb-glx0:amd64 (1.17.0-2) ...
109s Setting up libdebhelper-perl (13.20ubuntu1) ...
109s Setting up libdrm-intel1:amd64 (2.4.123-1) ...
109s Setting up x11-common (1:7.7+23ubuntu3) ...
110s Setting up m4 (1.4.19-4build1) ...
110s Setting up libxcb-shm0:amd64 (1.17.0-2) ...
110s Setting up libgomp1:amd64 (14.2.0-12ubuntu1) ...
110s Setting up libxxf86vm1:amd64 (1:1.1.4-1build4) ...
110s Setting up libxcb-xkb1:amd64 (1.17.0-2) ...
110s Setting up libxcb-present0:amd64 (1.17.0-2) ...
110s Setting up libfontenc1:amd64 (1:1.1.8-1build1) ...
110s Setting up autotools-dev (20220109.1) ...
110s Setting up libblas3:amd64 (3.12.0-4) ...
110s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
110s Setting up libgles2:amd64 (1.7.0-1build1) ...
110s Setting up libxfixes3:amd64 (1:6.0.0-2build1) ...
110s Setting up libxcb-sync1:amd64 (1.17.0-2) ...
110s Setting up libquadmath0:amd64 (14.2.0-12ubuntu1) ...
110s Setting up libxkbcommon-x11-0:amd64 (1.7.0-2) ...
110s Setting up libmpc3:amd64 (1.3.1-1build2) ...
110s Setting up libxrandr2:amd64 (2:1.5.4-1) ...
110s Setting up autopoint (0.22.5-3) ...
110s Setting up libglapi-mesa:amd64 (24.2.8-1ubuntu1) ...
110s Setting up libgfortran5:amd64 (14.2.0-12ubuntu1) ...
110s Setting up libvulkan1:amd64 (1.3.296.0-1) ...
110s Setting up autoconf (2.72-3) ...
110s Setting up libubsan1:amd64 (14.2.0-12ubuntu1) ...
110s Setting up libxcb-dri2-0:amd64 (1.17.0-2) ...
110s Setting up dwz (0.15-1build6) ...
110s Setting up libxshmfence1:amd64 (1.3-1build5) ...
110s Setting up libhwasan0:amd64 (14.2.0-12ubuntu1) ...
110s Setting up libxcb-randr0:amd64 (1.17.0-2) ...
110s Setting up libasan8:amd64 (14.2.0-12ubuntu1) ...
110s Setting up debugedit (1:5.1-1) ...
110s Setting up libwayland-egl1:amd64 (1.23.0-1) ...
110s Setting up libxkbfile1:amd64 (1:1.1.0-1build4) ...
110s Setting up libtsan2:amd64 (14.2.0-12ubuntu1) ...
110s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
110s Setting up libisl23:amd64 (0.27-1) ...
110s Setting up libxfont2:amd64 (1:2.0.6-1build1) ...
110s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
110s Setting up sphinx-rtd-theme-common (3.0.2+dfsg-1) ...
110s Setting up libcc1-0:amd64 (14.2.0-12ubuntu1) ...
110s Setting up liblsan0:amd64 (14.2.0-12ubuntu1) ...
110s Setting up libitm1:amd64 (14.2.0-12ubuntu1) ...
110s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
110s Setting up libwayland-client0:amd64 (1.23.0-1) ...
110s Setting up automake (1:1.16.5-1.3ubuntu1) ...
110s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
110s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
110s Setting up libice6:amd64 (2:1.1.1-1) ...
110s Setting up mesa-libgallium:amd64 (24.2.8-1ubuntu1) ...
110s Setting up liblapack3:amd64 (3.12.0-4) ...
110s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
110s Setting up gettext (0.22.5-3) ...
110s Setting up libgbm1:amd64 (24.2.8-1ubuntu1) ...
110s Setting up libgl1-mesa-dri:amd64 (24.2.8-1ubuntu1) ...
110s Setting up intltool-debian (0.35.0+20060710.6) ...
110s Setting up libegl-mesa0:amd64 (24.2.8-1ubuntu1) ...
110s Setting up cpp-14-x86-64-linux-gnu (14.2.0-12ubuntu1) ...
110s Setting up python3-numpy (1:1.26.4+ds-12) ...
111s Setting up libjs-sphinxdoc (8.1.3-3) ...
111s Setting up cpp-14 (14.2.0-12ubuntu1) ...
111s Setting up dh-strip-nondeterminism (1.14.0-1) ...
111s Setting up libegl1:amd64 (1.7.0-1build1) ...
111s Setting up libdecor-0-0:amd64 (0.2.2-2) ...
111s Setting up libgcc-14-dev:amd64 (14.2.0-12ubuntu1) ...
111s Setting up libsm6:amd64 (2:1.2.4-1) ...
111s Setting up python3-mrcfile (1.5.3-3) ...
111s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ...
111s Setting up libglx-mesa0:amd64 (24.2.8-1ubuntu1) ...
111s Setting up libglx0:amd64 (1.7.0-1build1) ...
111s Setting up po-debconf (1.0.21+nmu1) ...
111s Setting up libgl1:amd64 (1.7.0-1build1) ...
111s Setting up mesa-utils-bin:amd64 (9.0.0-2) ...
111s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ...
112s Setting up cpp (4:14.1.0-2ubuntu1) ...
112s Setting up gcc-14-x86-64-linux-gnu (14.2.0-12ubuntu1) ...
112s Setting up libxmu6:amd64 (2:1.1.3-3build2) ...
112s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ...
112s Setting up libxaw7:amd64 (2:1.0.16-1) ...
112s Setting up gcc-14 (14.2.0-12ubuntu1) ...
112s Setting up mesa-utils (9.0.0-2) ...
112s Setting up libtool (2.4.7-8) ...
112s Setting up x11-xkb-utils (7.7+9) ...
112s Setting up gcc (4:14.1.0-2ubuntu1) ...
112s Setting up dh-autoreconf (20) ...
112s Setting up xserver-common (2:21.1.15-2ubuntu2) ...
112s Setting up xvfb (2:21.1.15-2ubuntu2) ...
112s Setting up debhelper (13.20ubuntu1) ...
112s Processing triggers for install-info (7.1.1-1) ...
112s Processing triggers for libc-bin (2.40-4ubuntu1) ...
112s Processing triggers for man-db (2.13.0-1) ...
114s autopkgtest [22:08:05]: testbed environment configured for cross-architecture building
114s autopkgtest [22:08:05]: test command1: xvfb-run -s "-screen 0 1024x768x24 -ac +extension GLX +render -noreset" sh debian/tests/gui
114s autopkgtest [22:08:05]: test command1: [-----------------------
115s Package python3-mrcfile: 
115s   -testing /usr/bin/mrcfile-header: exit(0) ok
115s   -testing /usr/bin/mrcfile-validate: exit(0) ok
116s autopkgtest [22:08:07]: test command1: -----------------------]
116s command1             PASS
116s autopkgtest [22:08:07]: test command1:  - - - - - - - - - - results - - - - - - - - - -
117s autopkgtest [22:08:08]: test python: preparing testbed
341s autopkgtest [22:11:52]: testbed dpkg architecture: amd64
341s autopkgtest [22:11:52]: testbed apt version: 2.9.18
342s autopkgtest [22:11:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup
342s autopkgtest [22:11:53]: testbed release detected to be: plucky
343s autopkgtest [22:11:54]: updating testbed package index (apt update)
343s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
343s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
343s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
343s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
343s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B]
343s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.4 kB]
343s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [168 kB]
343s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [923 kB]
344s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [323 kB]
344s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [221 kB]
344s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.1 kB]
344s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2408 B]
344s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [482 kB]
344s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [1110 kB]
344s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [7288 B]
344s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [26.7 kB]
344s Fetched 3403 kB in 1s (3518 kB/s)
345s Reading package lists...
345s Reading package lists...
345s Building dependency tree...
345s Reading state information...
345s Calculating upgrade...
346s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
346s Reading package lists...
346s Building dependency tree...
346s Reading state information...
346s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
346s autopkgtest [22:11:57]: upgrading testbed (apt dist-upgrade and autopurge)
346s Reading package lists...
346s Building dependency tree...
346s Reading state information...
347s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
347s Starting 2 pkgProblemResolver with broken count: 0
347s Done
347s Entering ResolveByKeep
347s 
347s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
347s Reading package lists...
348s Building dependency tree...
348s Reading state information...
348s Starting pkgProblemResolver with broken count: 0
348s Starting 2 pkgProblemResolver with broken count: 0
348s Done
348s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
351s Reading package lists...
351s Building dependency tree...
351s Reading state information...
351s Starting pkgProblemResolver with broken count: 0
351s Starting 2 pkgProblemResolver with broken count: 0
351s Done
351s The following NEW packages will be installed:
351s   fonts-font-awesome fonts-lato libblas3 libgfortran5 libjs-jquery
351s   libjs-sphinxdoc libjs-underscore liblapack3 libpython3.13-minimal
351s   libpython3.13-stdlib python3-all python3-iniconfig python3-mrcfile
351s   python3-numpy python3-packaging python3-pluggy python3-pytest python3.13
351s   python3.13-minimal sphinx-rtd-theme-common
352s 0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded.
352s Need to get 21.0 MB of archives.
352s After this operation, 92.6 MB of additional disk space will be used.
352s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-lato all 2.015-1 [2781 kB]
352s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.1-2 [881 kB]
352s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.1-2 [2358 kB]
352s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
352s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB]
352s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-12ubuntu1 [909 kB]
352s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
352s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
352s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 8.1.3-3 [30.9 kB]
352s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB]
352s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.1-2 [2088 kB]
353s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.1-2 [729 kB]
353s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.12.8-1 [890 B]
353s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B]
353s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [5319 kB]
353s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-1 [1014 kB]
353s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mrcfile all 1.5.3-3 [114 kB]
353s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB]
353s Get:19 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB]
353s Get:20 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.4-1 [252 kB]
353s Fetched 21.0 MB in 1s (17.1 MB/s)
353s Selecting previously unselected package fonts-lato.
353s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 75824 files and directories currently installed.)
353s Preparing to unpack .../00-fonts-lato_2.015-1_all.deb ...
353s Unpacking fonts-lato (2.015-1) ...
353s Selecting previously unselected package libpython3.13-minimal:amd64.
353s Preparing to unpack .../01-libpython3.13-minimal_3.13.1-2_amd64.deb ...
353s Unpacking libpython3.13-minimal:amd64 (3.13.1-2) ...
353s Selecting previously unselected package python3.13-minimal.
353s Preparing to unpack .../02-python3.13-minimal_3.13.1-2_amd64.deb ...
353s Unpacking python3.13-minimal (3.13.1-2) ...
354s Selecting previously unselected package fonts-font-awesome.
354s Preparing to unpack .../03-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
354s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
354s Selecting previously unselected package libblas3:amd64.
354s Preparing to unpack .../04-libblas3_3.12.0-4_amd64.deb ...
354s Unpacking libblas3:amd64 (3.12.0-4) ...
354s Selecting previously unselected package libgfortran5:amd64.
354s Preparing to unpack .../05-libgfortran5_14.2.0-12ubuntu1_amd64.deb ...
354s Unpacking libgfortran5:amd64 (14.2.0-12ubuntu1) ...
354s Selecting previously unselected package libjs-jquery.
354s Preparing to unpack .../06-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
354s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
354s Selecting previously unselected package libjs-underscore.
354s Preparing to unpack .../07-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ...
354s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
354s Selecting previously unselected package libjs-sphinxdoc.
354s Preparing to unpack .../08-libjs-sphinxdoc_8.1.3-3_all.deb ...
354s Unpacking libjs-sphinxdoc (8.1.3-3) ...
354s Selecting previously unselected package liblapack3:amd64.
354s Preparing to unpack .../09-liblapack3_3.12.0-4_amd64.deb ...
354s Unpacking liblapack3:amd64 (3.12.0-4) ...
354s Selecting previously unselected package libpython3.13-stdlib:amd64.
354s Preparing to unpack .../10-libpython3.13-stdlib_3.13.1-2_amd64.deb ...
354s Unpacking libpython3.13-stdlib:amd64 (3.13.1-2) ...
354s Selecting previously unselected package python3.13.
354s Preparing to unpack .../11-python3.13_3.13.1-2_amd64.deb ...
354s Unpacking python3.13 (3.13.1-2) ...
354s Selecting previously unselected package python3-all.
354s Preparing to unpack .../12-python3-all_3.12.8-1_amd64.deb ...
354s Unpacking python3-all (3.12.8-1) ...
354s Selecting previously unselected package python3-iniconfig.
354s Preparing to unpack .../13-python3-iniconfig_1.1.1-2_all.deb ...
354s Unpacking python3-iniconfig (1.1.1-2) ...
354s Selecting previously unselected package python3-numpy.
354s Preparing to unpack .../14-python3-numpy_1%3a1.26.4+ds-12_amd64.deb ...
354s Unpacking python3-numpy (1:1.26.4+ds-12) ...
354s Selecting previously unselected package sphinx-rtd-theme-common.
354s Preparing to unpack .../15-sphinx-rtd-theme-common_3.0.2+dfsg-1_all.deb ...
354s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-1) ...
354s Selecting previously unselected package python3-mrcfile.
354s Preparing to unpack .../16-python3-mrcfile_1.5.3-3_all.deb ...
354s Unpacking python3-mrcfile (1.5.3-3) ...
354s Selecting previously unselected package python3-packaging.
354s Preparing to unpack .../17-python3-packaging_24.2-1_all.deb ...
354s Unpacking python3-packaging (24.2-1) ...
354s Selecting previously unselected package python3-pluggy.
354s Preparing to unpack .../18-python3-pluggy_1.5.0-1_all.deb ...
354s Unpacking python3-pluggy (1.5.0-1) ...
354s Selecting previously unselected package python3-pytest.
354s Preparing to unpack .../19-python3-pytest_8.3.4-1_all.deb ...
354s Unpacking python3-pytest (8.3.4-1) ...
354s Setting up python3-iniconfig (1.1.1-2) ...
354s Setting up fonts-lato (2.015-1) ...
354s Setting up libpython3.13-minimal:amd64 (3.13.1-2) ...
354s Setting up libblas3:amd64 (3.12.0-4) ...
355s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
355s Setting up python3-packaging (24.2-1) ...
355s Setting up libgfortran5:amd64 (14.2.0-12ubuntu1) ...
355s Setting up python3-pluggy (1.5.0-1) ...
355s Setting up python3.13-minimal (3.13.1-2) ...
355s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
355s Setting up libpython3.13-stdlib:amd64 (3.13.1-2) ...
355s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
355s Setting up sphinx-rtd-theme-common (3.0.2+dfsg-1) ...
355s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
355s Setting up liblapack3:amd64 (3.12.0-4) ...
355s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
355s Setting up python3.13 (3.13.1-2) ...
356s Setting up python3-pytest (8.3.4-1) ...
357s Setting up python3-all (3.12.8-1) ...
357s Setting up python3-numpy (1:1.26.4+ds-12) ...
359s Setting up libjs-sphinxdoc (8.1.3-3) ...
359s Setting up python3-mrcfile (1.5.3-3) ...
359s Processing triggers for systemd (257-2ubuntu1) ...
359s Processing triggers for man-db (2.13.0-1) ...
360s Processing triggers for libc-bin (2.40-4ubuntu1) ...
368s autopkgtest [22:12:19]: testbed environment configured for cross-architecture building
368s autopkgtest [22:12:19]: test python: [-----------------------
368s + py3versions --supported
368s Testing with python3.13: 
368s + echo Testing with python3.13: 
368s + python3.13 -m pytest tests -v
368s ============================= test session starts ==============================
368s platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.13
368s cachedir: .pytest_cache
368s rootdir: /tmp/autopkgtest.XPaVHw/build.Npp/src
368s plugins: typeguard-4.4.1
369s collecting ... collected 863 items
369s 
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_1d_data_raises_exception PASSED [  0%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_5d_data_raises_exception PASSED [  0%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_absent_extended_header_is_read_as_zero_length_array PASSED [  0%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_add_label_with_normal_string PASSED [  0%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_adding_more_than_ten_labels_raises_exception PASSED [  0%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_adding_non_ascii_label_raises_exception PASSED [  0%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_adding_non_printable_label_raises_exception PASSED [  0%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_adding_too_long_label_raises_exception PASSED [  0%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_attributes_are_empty_after_init PASSED [  1%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_calling_setters_raises_exception_if_read_only PASSED [  1%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_can_call_set_image_stack_when_already_an_image_stack PASSED [  1%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_can_call_set_volume_when_already_a_volume PASSED [  1%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_can_deliberately_overwrite_file PASSED [  1%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_can_edit_data_in_read_write_mode PASSED [  1%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_can_edit_header_in_read_write_mode PASSED [  1%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_can_read_and_flush_stream_repeatedly PASSED [  1%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_cannot_accidentally_overwrite_file PASSED [  1%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_cannot_edit_data_in_read_only_mode PASSED [  2%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_cannot_edit_extended_header_in_read_only_mode PASSED [  2%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_cannot_edit_header_in_read_only_mode PASSED [  2%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_cannot_set_extended_header_in_read_only_mode PASSED [  2%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_cannot_use_invalid_file_modes PASSED [  2%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_check_writeable PASSED [  2%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_complex128_dtype_raises_exception PASSED [  2%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_complex256_dtype_raises_exception PASSED [  2%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_complex64_dtype_is_preserved_in_mode_4 PASSED [  3%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_creating_extended_header PASSED [  3%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_data_array_too_big_raises_exception PASSED [  3%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_data_is_not_copied_unnecessarily PASSED [  3%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_data_is_not_read_if_dimensions_are_too_huge PASSED [  3%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_data_transposed_in_place_is_written_without_errors PASSED [  3%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_data_values_are_correct PASSED [  3%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_default_data_is_correct PASSED [  3%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_default_extended_header_is_correct PASSED [  3%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_default_header_is_correct PASSED [  4%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_exception_raised_if_file_is_too_small_for_reading_data PASSED [  4%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_exception_raised_if_file_is_too_small_for_reading_extended_header PASSED [  4%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_extended_header_is_read_correctly PASSED [  4%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_extended_header_with_incorrect_type PASSED [  4%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_float16_dtype_is_preserved_in_mode_12 PASSED [  4%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_float32_dtype_is_preserved_in_mode_2 PASSED [  4%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_float64_dtype_raises_exception PASSED [  4%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_get_labels PASSED     [  4%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_get_labels_strips_unprintable_characters PASSED [  5%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_getting_nstart PASSED [  5%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_getting_voxel_size PASSED [  5%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_header_byte_order_is_changed_by_data_with_opposite_order PASSED [  5%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_header_byte_order_is_unchanged_by_data_with_native_order PASSED [  5%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_header_byte_order_is_unchanged_by_data_with_no_order PASSED [  5%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_header_is_correct_for_2d_data PASSED [  5%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_header_is_correct_for_3d_data PASSED [  5%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_header_is_correct_for_4d_data PASSED [  6%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_header_only_mode_does_not_read_data PASSED [  6%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_header_stats_are_undetermined_after_setting_empty_complex_data PASSED [  6%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_header_stats_are_undetermined_after_setting_empty_data PASSED [  6%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_header_stats_setting_complex_data PASSED [  6%]
369s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_image_stack_with_new_3d_data_is_still_image_stack PASSED [  6%]
372s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_indexed_extended_header_from_FEI1_file PASSED [  6%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_indexed_extended_header_from_FEI2_file PASSED [  6%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_int16_dtype_is_preserved_in_mode_1 PASSED [  6%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_int32_dtype_raises_exception PASSED [  7%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_int8_dtype_is_preserved_in_mode_0 PASSED [  7%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_machine_stamp_is_read_correctly PASSED [  7%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_new_header_contains_creator_label PASSED [  7%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_new_header_stats_are_undetermined PASSED [  7%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_non_c_contiguous_data_is_made_c_contiguous PASSED [  7%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_non_mrc_file_gives_correct_warnings_in_permissive_mode PASSED [  7%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_non_mrc_file_is_rejected PASSED [  7%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_opening_file_with_unknown_mode PASSED [  7%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_opening_nonexistent_file PASSED [  8%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_opening_with_pathlib PASSED [  8%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_permissive_read_with_wrong_machine_stamp PASSED [  8%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_print_header PASSED   [  8%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_removing_extended_header PASSED [  8%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_replacing_extended_header_different_size PASSED [  8%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_replacing_extended_header_same_size PASSED [  8%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_replacing_extended_header_too_big PASSED [  8%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_repr PASSED           [  9%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_reset_header_stats_are_undetermined PASSED [  9%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_data_attribute_raises_exception PASSED [  9%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_extended_header PASSED [  9%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_extended_header_attribute_raises_exception PASSED [  9%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_header_attribute_raises_exception PASSED [  9%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_nstart_as_modified_array PASSED [  9%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_nstart_as_single_number PASSED [  9%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_nstart_as_tuple PASSED [  9%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_origin_as_separate_fields PASSED [ 10%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_origin_as_single_field PASSED [ 10%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_origin_as_single_tuple PASSED [ 10%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_voxel_size_as_modified_array PASSED [ 10%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_voxel_size_as_single_number PASSED [ 10%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_voxel_size_as_tuple PASSED [ 10%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_stats_are_updated_for_new_data PASSED [ 10%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_stats_are_updated_on_request PASSED [ 10%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_stream_can_be_read_again PASSED [ 11%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_switching_2d_data_to_image_stack_raises_exception PASSED [ 11%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_switching_2d_data_to_volume_raises_exception PASSED [ 11%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_switching_4d_data_to_image_stack_raises_exception PASSED [ 11%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_switching_4d_data_to_volume_raises_exception PASSED [ 11%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_switching_image_stack_to_volume PASSED [ 11%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_switching_volume_to_image_stack PASSED [ 11%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_transposed_data_is_made_contiguous_on_set PASSED [ 11%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_uint16_dtype_is_preserved_in_mode_6 PASSED [ 11%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_uint8_dtype_is_widened_in_mode_6 PASSED [ 12%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_validate PASSED       [ 12%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_volume_stack_spacegroup_is_preserved_for_4d_data PASSED [ 12%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_voxel_size_is_read_correctly PASSED [ 12%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_warning_for_stats_with_inf PASSED [ 12%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_warning_for_stats_with_nan PASSED [ 12%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_warning_issued_if_file_is_too_large PASSED [ 12%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_float16 PASSED [ 12%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_0 PASSED [ 12%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_1_big_endian PASSED [ 13%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_1_little_endian PASSED [ 13%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_1_native_byte_order PASSED [ 13%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_2_big_endian PASSED [ 13%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_2_little_endian PASSED [ 13%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_2_native_byte_order PASSED [ 13%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_2_with_inf_and_nan PASSED [ 13%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_4_big_endian PASSED [ 13%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_4_little_endian PASSED [ 14%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_4_native_byte_order PASSED [ 14%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_4_with_inf_and_nan PASSED [ 14%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_6_big_endian PASSED [ 14%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_6_little_endian PASSED [ 14%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_6_native_byte_order PASSED [ 14%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_stack_mode_2_native_byte_order PASSED [ 14%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_unsigned_bytes PASSED [ 14%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_volume_mode_1_native_byte_order PASSED [ 14%]
375s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_volume_stack_mode_1_native_byte_order PASSED [ 15%]
375s tests/test_command_line.py::CommandLineTest::test_print_header PASSED    [ 15%]
375s tests/test_command_line.py::CommandLineTest::test_print_header_no_args PASSED [ 15%]
375s tests/test_command_line.py::CommandLineTest::test_print_header_nonexistent_file PASSED [ 15%]
375s tests/test_command_line.py::CommandLineTest::test_validate PASSED        [ 15%]
375s tests/test_command_line.py::CommandLineTest::test_validate_no_args PASSED [ 15%]
375s tests/test_dtypes.py::DtypesTest::test_fei1_ext_header_with_big_endian_byte_order PASSED [ 15%]
375s tests/test_dtypes.py::DtypesTest::test_fei1_ext_header_with_little_endian_byte_order PASSED [ 15%]
375s tests/test_dtypes.py::DtypesTest::test_fei1_ext_header_with_native_byte_order PASSED [ 15%]
375s tests/test_dtypes.py::DtypesTest::test_fei2_ext_header_with_big_endian_byte_order PASSED [ 16%]
375s tests/test_dtypes.py::DtypesTest::test_fei2_ext_header_with_little_endian_byte_order PASSED [ 16%]
375s tests/test_dtypes.py::DtypesTest::test_fei2_ext_header_with_native_byte_order PASSED [ 16%]
375s tests/test_dtypes.py::DtypesTest::test_invalid_byte_order_raises_exception PASSED [ 16%]
375s tests/test_future_mrcfile.py::FutureMrcFileTest::test_add_done_callback PASSED [ 16%]
375s tests/test_future_mrcfile.py::FutureMrcFileTest::test_arguments_passed_correctly PASSED [ 16%]
375s tests/test_future_mrcfile.py::FutureMrcFileTest::test_cancel PASSED      [ 16%]
375s tests/test_future_mrcfile.py::FutureMrcFileTest::test_cancelled PASSED   [ 16%]
375s tests/test_future_mrcfile.py::FutureMrcFileTest::test_exception PASSED   [ 17%]
375s tests/test_future_mrcfile.py::FutureMrcFileTest::test_running_and_done_status PASSED [ 17%]
375s tests/test_future_mrcfile.py::FutureMrcFileTest::test_timeout_from_exception PASSED [ 17%]
375s tests/test_future_mrcfile.py::FutureMrcFileTest::test_timeout_from_result PASSED [ 17%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_1d_data_raises_exception PASSED [ 17%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_5d_data_raises_exception PASSED [ 17%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_absent_extended_header_is_read_as_zero_length_array PASSED [ 17%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_add_label_with_normal_string PASSED [ 17%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_adding_more_than_ten_labels_raises_exception PASSED [ 17%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_adding_non_ascii_label_raises_exception PASSED [ 18%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_adding_non_printable_label_raises_exception PASSED [ 18%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_adding_too_long_label_raises_exception PASSED [ 18%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_attributes_are_empty_after_init PASSED [ 18%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_calling_setters_raises_exception_if_read_only PASSED [ 18%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_can_call_set_image_stack_when_already_an_image_stack PASSED [ 18%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_can_call_set_volume_when_already_a_volume PASSED [ 18%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_can_deliberately_overwrite_file PASSED [ 18%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_can_edit_data_in_read_write_mode PASSED [ 19%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_can_edit_header_in_read_write_mode PASSED [ 19%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_can_read_and_flush_stream_repeatedly PASSED [ 19%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_cannot_accidentally_overwrite_file PASSED [ 19%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_cannot_edit_data_in_read_only_mode PASSED [ 19%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_cannot_edit_extended_header_in_read_only_mode PASSED [ 19%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_cannot_edit_header_in_read_only_mode PASSED [ 19%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_cannot_set_extended_header_in_read_only_mode PASSED [ 19%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_cannot_use_invalid_file_modes PASSED [ 19%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_check_writeable PASSED  [ 20%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_complex128_dtype_raises_exception PASSED [ 20%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_complex256_dtype_raises_exception PASSED [ 20%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_complex64_dtype_is_preserved_in_mode_4 PASSED [ 20%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_creating_extended_header PASSED [ 20%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_data_array_too_big_raises_exception PASSED [ 20%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_data_is_not_copied_unnecessarily PASSED [ 20%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_data_is_not_read_if_dimensions_are_too_huge PASSED [ 20%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_data_transposed_in_place_is_written_without_errors PASSED [ 20%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_data_values_are_correct PASSED [ 21%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_default_data_is_correct PASSED [ 21%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_default_extended_header_is_correct PASSED [ 21%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_default_header_is_correct PASSED [ 21%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_exception_raised_if_file_is_too_small_for_reading_data PASSED [ 21%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_exception_raised_if_file_is_too_small_for_reading_extended_header PASSED [ 21%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_extended_header_is_read_correctly PASSED [ 21%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_extended_header_with_incorrect_type PASSED [ 21%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_float16_dtype_is_preserved_in_mode_12 PASSED [ 22%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_float32_dtype_is_preserved_in_mode_2 PASSED [ 22%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_float64_dtype_raises_exception PASSED [ 22%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_get_labels PASSED       [ 22%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_get_labels_strips_unprintable_characters PASSED [ 22%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_getting_nstart PASSED   [ 22%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_getting_voxel_size PASSED [ 22%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_header_byte_order_is_changed_by_data_with_opposite_order PASSED [ 22%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_header_byte_order_is_unchanged_by_data_with_native_order PASSED [ 22%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_header_byte_order_is_unchanged_by_data_with_no_order PASSED [ 23%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_header_is_correct_for_2d_data PASSED [ 23%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_header_is_correct_for_3d_data PASSED [ 23%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_header_is_correct_for_4d_data PASSED [ 23%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_header_only_mode_does_not_read_data PASSED [ 23%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_header_stats_are_undetermined_after_setting_empty_complex_data PASSED [ 23%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_header_stats_are_undetermined_after_setting_empty_data PASSED [ 23%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_header_stats_setting_complex_data PASSED [ 23%]
375s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_image_stack_with_new_3d_data_is_still_image_stack PASSED [ 23%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_indexed_extended_header_from_FEI1_file PASSED [ 24%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_indexed_extended_header_from_FEI2_file PASSED [ 24%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_int16_dtype_is_preserved_in_mode_1 PASSED [ 24%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_int32_dtype_raises_exception PASSED [ 24%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_int8_dtype_is_preserved_in_mode_0 PASSED [ 24%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_machine_stamp_is_read_correctly PASSED [ 24%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_new_header_contains_creator_label PASSED [ 24%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_new_header_stats_are_undetermined PASSED [ 24%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_non_c_contiguous_data_is_made_c_contiguous PASSED [ 25%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_non_mrc_file_gives_correct_warnings_in_permissive_mode PASSED [ 25%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_non_mrc_file_is_rejected PASSED [ 25%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_opening_file_with_unknown_mode PASSED [ 25%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_opening_nonexistent_file PASSED [ 25%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_opening_with_pathlib PASSED [ 25%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_permissive_read_with_wrong_machine_stamp PASSED [ 25%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_print_header PASSED     [ 25%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_removing_extended_header PASSED [ 25%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_replacing_extended_header_different_size PASSED [ 26%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_replacing_extended_header_same_size PASSED [ 26%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_replacing_extended_header_too_big PASSED [ 26%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_repr PASSED             [ 26%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_reset_header_stats_are_undetermined PASSED [ 26%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_data_attribute_raises_exception PASSED [ 26%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_extended_header PASSED [ 26%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_extended_header_attribute_raises_exception PASSED [ 26%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_header_attribute_raises_exception PASSED [ 26%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_nstart_as_modified_array PASSED [ 27%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_nstart_as_single_number PASSED [ 27%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_nstart_as_tuple PASSED [ 27%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_origin_as_separate_fields PASSED [ 27%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_origin_as_single_field PASSED [ 27%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_origin_as_single_tuple PASSED [ 27%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_voxel_size_as_modified_array PASSED [ 27%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_voxel_size_as_single_number PASSED [ 27%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_voxel_size_as_tuple PASSED [ 28%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_stats_are_updated_for_new_data PASSED [ 28%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_stats_are_updated_on_request PASSED [ 28%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_stream_can_be_read_again PASSED [ 28%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_switching_2d_data_to_image_stack_raises_exception PASSED [ 28%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_switching_2d_data_to_volume_raises_exception PASSED [ 28%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_switching_4d_data_to_image_stack_raises_exception PASSED [ 28%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_switching_4d_data_to_volume_raises_exception PASSED [ 28%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_switching_image_stack_to_volume PASSED [ 28%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_switching_volume_to_image_stack PASSED [ 29%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_transposed_data_is_made_contiguous_on_set PASSED [ 29%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_uint16_dtype_is_preserved_in_mode_6 PASSED [ 29%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_uint8_dtype_is_widened_in_mode_6 PASSED [ 29%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_validate PASSED         [ 29%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_volume_stack_spacegroup_is_preserved_for_4d_data PASSED [ 29%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_voxel_size_is_read_correctly PASSED [ 29%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_warning_for_stats_with_inf PASSED [ 29%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_warning_for_stats_with_nan PASSED [ 30%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_warning_issued_if_file_is_too_large PASSED [ 30%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_float16 PASSED [ 30%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_0 PASSED [ 30%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_1_big_endian PASSED [ 30%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_1_little_endian PASSED [ 30%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_1_native_byte_order PASSED [ 30%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_2_big_endian PASSED [ 30%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_2_little_endian PASSED [ 30%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_2_native_byte_order PASSED [ 31%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_2_with_inf_and_nan PASSED [ 31%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_4_big_endian PASSED [ 31%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_4_little_endian PASSED [ 31%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_4_native_byte_order PASSED [ 31%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_4_with_inf_and_nan PASSED [ 31%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_6_big_endian PASSED [ 31%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_6_little_endian PASSED [ 31%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_6_native_byte_order PASSED [ 31%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_stack_mode_2_native_byte_order PASSED [ 32%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_unsigned_bytes PASSED [ 32%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_volume_mode_1_native_byte_order PASSED [ 32%]
376s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_volume_stack_mode_1_native_byte_order PASSED [ 32%]
376s tests/test_load_functions.py::LoadFunctionTest::test_bzip2_opening PASSED [ 32%]
376s tests/test_load_functions.py::LoadFunctionTest::test_error_in_bzip2_opening_raises_new_exception PASSED [ 32%]
376s tests/test_load_functions.py::LoadFunctionTest::test_error_in_gzip_opening_raises_new_exception PASSED [ 32%]
376s tests/test_load_functions.py::LoadFunctionTest::test_error_overwriting_file_with_open_function PASSED [ 32%]
376s tests/test_load_functions.py::LoadFunctionTest::test_gzip_opening PASSED [ 33%]
376s tests/test_load_functions.py::LoadFunctionTest::test_gzipped_non_mrc_file_raises_exception PASSED [ 33%]
376s tests/test_load_functions.py::LoadFunctionTest::test_header_only_opening PASSED [ 33%]
376s tests/test_load_functions.py::LoadFunctionTest::test_invalid_mode_raises_exception PASSED [ 33%]
376s tests/test_load_functions.py::LoadFunctionTest::test_mmap_opening PASSED [ 33%]
376s tests/test_load_functions.py::LoadFunctionTest::test_new_bzip2_file PASSED [ 33%]
376s tests/test_load_functions.py::LoadFunctionTest::test_new_empty_file PASSED [ 33%]
376s tests/test_load_functions.py::LoadFunctionTest::test_new_empty_file_with_open_function PASSED [ 33%]
376s tests/test_load_functions.py::LoadFunctionTest::test_new_file_with_data PASSED [ 33%]
376s tests/test_load_functions.py::LoadFunctionTest::test_new_gzip_file PASSED [ 34%]
376s tests/test_load_functions.py::LoadFunctionTest::test_new_mmap PASSED     [ 34%]
376s tests/test_load_functions.py::LoadFunctionTest::test_new_mmap_with_extended_header PASSED [ 34%]
376s tests/test_load_functions.py::LoadFunctionTest::test_new_mmap_with_extended_header_too_big PASSED [ 34%]
376s tests/test_load_functions.py::LoadFunctionTest::test_new_mmap_with_shape_too_big PASSED [ 34%]
376s tests/test_load_functions.py::LoadFunctionTest::test_non_mrc_file_raises_exception PASSED [ 34%]
376s tests/test_load_functions.py::LoadFunctionTest::test_normal_opening PASSED [ 34%]
376s tests/test_load_functions.py::LoadFunctionTest::test_normal_opening_pathlib PASSED [ 34%]
376s tests/test_load_functions.py::LoadFunctionTest::test_opening_nonexistent_file PASSED [ 34%]
376s tests/test_load_functions.py::LoadFunctionTest::test_overwriting_flag PASSED [ 35%]
376s tests/test_load_functions.py::LoadFunctionTest::test_read PASSED         [ 35%]
376s tests/test_load_functions.py::LoadFunctionTest::test_simple_async_opening PASSED [ 35%]
376s tests/test_load_functions.py::LoadFunctionTest::test_slow_async_opening PASSED [ 35%]
376s tests/test_load_functions.py::LoadFunctionTest::test_switching_mode PASSED [ 35%]
376s tests/test_load_functions.py::LoadFunctionTest::test_unknown_compression_type PASSED [ 35%]
376s tests/test_load_functions.py::LoadFunctionTest::test_write PASSED        [ 35%]
376s tests/test_load_functions.py::LoadFunctionTest::test_write_with_auto_compression PASSED [ 35%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_bzip2_opening PASSED [ 36%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_error_in_bzip2_opening_raises_new_exception PASSED [ 36%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_error_in_gzip_opening_raises_new_exception PASSED [ 36%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_error_overwriting_file_with_open_function PASSED [ 36%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_gzip_opening PASSED [ 36%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_gzipped_non_mrc_file_raises_exception PASSED [ 36%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_header_only_opening PASSED [ 36%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_invalid_mode_raises_exception PASSED [ 36%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_mmap_opening PASSED [ 36%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_new_bzip2_file PASSED [ 37%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_new_empty_file PASSED [ 37%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_new_empty_file_with_open_function PASSED [ 37%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_new_file_with_data PASSED [ 37%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_new_gzip_file PASSED [ 37%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_new_mmap PASSED [ 37%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_new_mmap_with_extended_header PASSED [ 37%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_new_mmap_with_extended_header_too_big PASSED [ 37%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_new_mmap_with_shape_too_big PASSED [ 38%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_non_mrc_file_raises_exception PASSED [ 38%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_normal_opening PASSED [ 38%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_normal_opening_pathlib PASSED [ 38%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_opening_nonexistent_file PASSED [ 38%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_overwriting_flag PASSED [ 38%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_read PASSED [ 38%]
376s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_simple_async_opening PASSED [ 38%]
377s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_slow_async_opening PASSED [ 38%]
377s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_switching_mode PASSED [ 39%]
377s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_unknown_compression_type PASSED [ 39%]
377s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_write PASSED [ 39%]
377s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_write_with_auto_compression PASSED [ 39%]
377s tests/test_mrcfile.py::MrcFileTest::test_1d_data_raises_exception PASSED [ 39%]
377s tests/test_mrcfile.py::MrcFileTest::test_5d_data_raises_exception PASSED [ 39%]
377s tests/test_mrcfile.py::MrcFileTest::test_absent_extended_header_is_read_as_zero_length_array PASSED [ 39%]
377s tests/test_mrcfile.py::MrcFileTest::test_add_label_with_normal_string PASSED [ 39%]
377s tests/test_mrcfile.py::MrcFileTest::test_adding_more_than_ten_labels_raises_exception PASSED [ 39%]
377s tests/test_mrcfile.py::MrcFileTest::test_adding_non_ascii_label_raises_exception PASSED [ 40%]
377s tests/test_mrcfile.py::MrcFileTest::test_adding_non_printable_label_raises_exception PASSED [ 40%]
377s tests/test_mrcfile.py::MrcFileTest::test_adding_too_long_label_raises_exception PASSED [ 40%]
377s tests/test_mrcfile.py::MrcFileTest::test_attributes_are_empty_after_init PASSED [ 40%]
377s tests/test_mrcfile.py::MrcFileTest::test_calling_setters_raises_exception_if_read_only PASSED [ 40%]
377s tests/test_mrcfile.py::MrcFileTest::test_can_call_set_image_stack_when_already_an_image_stack PASSED [ 40%]
377s tests/test_mrcfile.py::MrcFileTest::test_can_call_set_volume_when_already_a_volume PASSED [ 40%]
377s tests/test_mrcfile.py::MrcFileTest::test_can_deliberately_overwrite_file PASSED [ 40%]
377s tests/test_mrcfile.py::MrcFileTest::test_can_edit_data_in_read_write_mode PASSED [ 41%]
377s tests/test_mrcfile.py::MrcFileTest::test_can_edit_header_in_read_write_mode PASSED [ 41%]
377s tests/test_mrcfile.py::MrcFileTest::test_can_read_and_flush_stream_repeatedly PASSED [ 41%]
377s tests/test_mrcfile.py::MrcFileTest::test_cannot_accidentally_overwrite_file PASSED [ 41%]
377s tests/test_mrcfile.py::MrcFileTest::test_cannot_edit_data_in_read_only_mode PASSED [ 41%]
377s tests/test_mrcfile.py::MrcFileTest::test_cannot_edit_extended_header_in_read_only_mode PASSED [ 41%]
377s tests/test_mrcfile.py::MrcFileTest::test_cannot_edit_header_in_read_only_mode PASSED [ 41%]
377s tests/test_mrcfile.py::MrcFileTest::test_cannot_set_extended_header_in_read_only_mode PASSED [ 41%]
377s tests/test_mrcfile.py::MrcFileTest::test_cannot_use_invalid_file_modes PASSED [ 41%]
377s tests/test_mrcfile.py::MrcFileTest::test_check_writeable PASSED          [ 42%]
377s tests/test_mrcfile.py::MrcFileTest::test_complex128_dtype_raises_exception PASSED [ 42%]
377s tests/test_mrcfile.py::MrcFileTest::test_complex256_dtype_raises_exception PASSED [ 42%]
377s tests/test_mrcfile.py::MrcFileTest::test_complex64_dtype_is_preserved_in_mode_4 PASSED [ 42%]
377s tests/test_mrcfile.py::MrcFileTest::test_creating_extended_header PASSED [ 42%]
377s tests/test_mrcfile.py::MrcFileTest::test_data_array_too_big_raises_exception PASSED [ 42%]
377s tests/test_mrcfile.py::MrcFileTest::test_data_is_not_copied_unnecessarily PASSED [ 42%]
377s tests/test_mrcfile.py::MrcFileTest::test_data_is_not_read_if_dimensions_are_too_huge PASSED [ 42%]
377s tests/test_mrcfile.py::MrcFileTest::test_data_transposed_in_place_is_written_without_errors PASSED [ 42%]
377s tests/test_mrcfile.py::MrcFileTest::test_data_values_are_correct PASSED  [ 43%]
377s tests/test_mrcfile.py::MrcFileTest::test_default_data_is_correct PASSED  [ 43%]
377s tests/test_mrcfile.py::MrcFileTest::test_default_extended_header_is_correct PASSED [ 43%]
377s tests/test_mrcfile.py::MrcFileTest::test_default_header_is_correct PASSED [ 43%]
377s tests/test_mrcfile.py::MrcFileTest::test_exception_raised_if_file_is_too_small_for_reading_data PASSED [ 43%]
377s tests/test_mrcfile.py::MrcFileTest::test_exception_raised_if_file_is_too_small_for_reading_extended_header PASSED [ 43%]
377s tests/test_mrcfile.py::MrcFileTest::test_extended_header_is_read_correctly PASSED [ 43%]
377s tests/test_mrcfile.py::MrcFileTest::test_extended_header_with_incorrect_type PASSED [ 43%]
377s tests/test_mrcfile.py::MrcFileTest::test_float16_dtype_is_preserved_in_mode_12 PASSED [ 44%]
377s tests/test_mrcfile.py::MrcFileTest::test_float32_dtype_is_preserved_in_mode_2 PASSED [ 44%]
377s tests/test_mrcfile.py::MrcFileTest::test_float64_dtype_raises_exception PASSED [ 44%]
377s tests/test_mrcfile.py::MrcFileTest::test_get_labels PASSED               [ 44%]
377s tests/test_mrcfile.py::MrcFileTest::test_get_labels_strips_unprintable_characters PASSED [ 44%]
377s tests/test_mrcfile.py::MrcFileTest::test_getting_nstart PASSED           [ 44%]
377s tests/test_mrcfile.py::MrcFileTest::test_getting_voxel_size PASSED       [ 44%]
377s tests/test_mrcfile.py::MrcFileTest::test_header_byte_order_is_changed_by_data_with_opposite_order PASSED [ 44%]
377s tests/test_mrcfile.py::MrcFileTest::test_header_byte_order_is_unchanged_by_data_with_native_order PASSED [ 44%]
377s tests/test_mrcfile.py::MrcFileTest::test_header_byte_order_is_unchanged_by_data_with_no_order PASSED [ 45%]
377s tests/test_mrcfile.py::MrcFileTest::test_header_is_correct_for_2d_data PASSED [ 45%]
377s tests/test_mrcfile.py::MrcFileTest::test_header_is_correct_for_3d_data PASSED [ 45%]
377s tests/test_mrcfile.py::MrcFileTest::test_header_is_correct_for_4d_data PASSED [ 45%]
377s tests/test_mrcfile.py::MrcFileTest::test_header_only_mode_does_not_read_data PASSED [ 45%]
377s tests/test_mrcfile.py::MrcFileTest::test_header_stats_are_undetermined_after_setting_empty_complex_data PASSED [ 45%]
377s tests/test_mrcfile.py::MrcFileTest::test_header_stats_are_undetermined_after_setting_empty_data PASSED [ 45%]
377s tests/test_mrcfile.py::MrcFileTest::test_header_stats_setting_complex_data PASSED [ 45%]
377s tests/test_mrcfile.py::MrcFileTest::test_image_stack_with_new_3d_data_is_still_image_stack PASSED [ 46%]
377s tests/test_mrcfile.py::MrcFileTest::test_indexed_extended_header_from_FEI1_file PASSED [ 46%]
377s tests/test_mrcfile.py::MrcFileTest::test_indexed_extended_header_from_FEI2_file PASSED [ 46%]
377s tests/test_mrcfile.py::MrcFileTest::test_int16_dtype_is_preserved_in_mode_1 PASSED [ 46%]
377s tests/test_mrcfile.py::MrcFileTest::test_int32_dtype_raises_exception PASSED [ 46%]
377s tests/test_mrcfile.py::MrcFileTest::test_int8_dtype_is_preserved_in_mode_0 PASSED [ 46%]
377s tests/test_mrcfile.py::MrcFileTest::test_machine_stamp_is_read_correctly PASSED [ 46%]
377s tests/test_mrcfile.py::MrcFileTest::test_new_header_contains_creator_label PASSED [ 46%]
377s tests/test_mrcfile.py::MrcFileTest::test_new_header_stats_are_undetermined PASSED [ 46%]
377s tests/test_mrcfile.py::MrcFileTest::test_non_c_contiguous_data_is_made_c_contiguous PASSED [ 47%]
377s tests/test_mrcfile.py::MrcFileTest::test_non_mrc_file_gives_correct_warnings_in_permissive_mode PASSED [ 47%]
377s tests/test_mrcfile.py::MrcFileTest::test_non_mrc_file_is_rejected PASSED [ 47%]
377s tests/test_mrcfile.py::MrcFileTest::test_opening_file_with_unknown_mode PASSED [ 47%]
377s tests/test_mrcfile.py::MrcFileTest::test_opening_nonexistent_file PASSED [ 47%]
377s tests/test_mrcfile.py::MrcFileTest::test_opening_with_pathlib PASSED     [ 47%]
377s tests/test_mrcfile.py::MrcFileTest::test_permissive_read_with_wrong_machine_stamp PASSED [ 47%]
377s tests/test_mrcfile.py::MrcFileTest::test_print_header PASSED             [ 47%]
377s tests/test_mrcfile.py::MrcFileTest::test_removing_extended_header PASSED [ 47%]
377s tests/test_mrcfile.py::MrcFileTest::test_replacing_extended_header_different_size PASSED [ 48%]
377s tests/test_mrcfile.py::MrcFileTest::test_replacing_extended_header_same_size PASSED [ 48%]
377s tests/test_mrcfile.py::MrcFileTest::test_replacing_extended_header_too_big PASSED [ 48%]
377s tests/test_mrcfile.py::MrcFileTest::test_repr PASSED                     [ 48%]
377s tests/test_mrcfile.py::MrcFileTest::test_reset_header_stats_are_undetermined PASSED [ 48%]
377s tests/test_mrcfile.py::MrcFileTest::test_setting_data_attribute_raises_exception PASSED [ 48%]
377s tests/test_mrcfile.py::MrcFileTest::test_setting_extended_header PASSED  [ 48%]
377s tests/test_mrcfile.py::MrcFileTest::test_setting_extended_header_attribute_raises_exception PASSED [ 48%]
377s tests/test_mrcfile.py::MrcFileTest::test_setting_header_attribute_raises_exception PASSED [ 49%]
377s tests/test_mrcfile.py::MrcFileTest::test_setting_nstart_as_modified_array PASSED [ 49%]
377s tests/test_mrcfile.py::MrcFileTest::test_setting_nstart_as_single_number PASSED [ 49%]
377s tests/test_mrcfile.py::MrcFileTest::test_setting_nstart_as_tuple PASSED  [ 49%]
377s tests/test_mrcfile.py::MrcFileTest::test_setting_origin_as_separate_fields PASSED [ 49%]
377s tests/test_mrcfile.py::MrcFileTest::test_setting_origin_as_single_field PASSED [ 49%]
377s tests/test_mrcfile.py::MrcFileTest::test_setting_origin_as_single_tuple PASSED [ 49%]
377s tests/test_mrcfile.py::MrcFileTest::test_setting_voxel_size_as_modified_array PASSED [ 49%]
378s tests/test_mrcfile.py::MrcFileTest::test_setting_voxel_size_as_single_number PASSED [ 49%]
378s tests/test_mrcfile.py::MrcFileTest::test_setting_voxel_size_as_tuple PASSED [ 50%]
378s tests/test_mrcfile.py::MrcFileTest::test_stats_are_updated_for_new_data PASSED [ 50%]
378s tests/test_mrcfile.py::MrcFileTest::test_stats_are_updated_on_request PASSED [ 50%]
378s tests/test_mrcfile.py::MrcFileTest::test_stream_can_be_read_again PASSED [ 50%]
378s tests/test_mrcfile.py::MrcFileTest::test_switching_2d_data_to_image_stack_raises_exception PASSED [ 50%]
378s tests/test_mrcfile.py::MrcFileTest::test_switching_2d_data_to_volume_raises_exception PASSED [ 50%]
378s tests/test_mrcfile.py::MrcFileTest::test_switching_4d_data_to_image_stack_raises_exception PASSED [ 50%]
378s tests/test_mrcfile.py::MrcFileTest::test_switching_4d_data_to_volume_raises_exception PASSED [ 50%]
378s tests/test_mrcfile.py::MrcFileTest::test_switching_image_stack_to_volume PASSED [ 50%]
378s tests/test_mrcfile.py::MrcFileTest::test_switching_volume_to_image_stack PASSED [ 51%]
378s tests/test_mrcfile.py::MrcFileTest::test_transposed_data_is_made_contiguous_on_set PASSED [ 51%]
378s tests/test_mrcfile.py::MrcFileTest::test_uint16_dtype_is_preserved_in_mode_6 PASSED [ 51%]
378s tests/test_mrcfile.py::MrcFileTest::test_uint8_dtype_is_widened_in_mode_6 PASSED [ 51%]
378s tests/test_mrcfile.py::MrcFileTest::test_validate PASSED                 [ 51%]
378s tests/test_mrcfile.py::MrcFileTest::test_volume_stack_spacegroup_is_preserved_for_4d_data PASSED [ 51%]
378s tests/test_mrcfile.py::MrcFileTest::test_voxel_size_is_read_correctly PASSED [ 51%]
378s tests/test_mrcfile.py::MrcFileTest::test_warning_for_stats_with_inf PASSED [ 51%]
378s tests/test_mrcfile.py::MrcFileTest::test_warning_for_stats_with_nan PASSED [ 52%]
378s tests/test_mrcfile.py::MrcFileTest::test_warning_issued_if_file_is_too_large PASSED [ 52%]
378s tests/test_mrcfile.py::MrcFileTest::test_writing_image_float16 PASSED    [ 52%]
378s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_0 PASSED     [ 52%]
378s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_1_big_endian PASSED [ 52%]
378s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_1_little_endian PASSED [ 52%]
378s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_1_native_byte_order PASSED [ 52%]
378s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_2_big_endian PASSED [ 52%]
378s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_2_little_endian PASSED [ 52%]
378s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_2_native_byte_order PASSED [ 53%]
378s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_2_with_inf_and_nan PASSED [ 53%]
378s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_4_big_endian PASSED [ 53%]
378s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_4_little_endian PASSED [ 53%]
378s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_4_native_byte_order PASSED [ 53%]
378s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_4_with_inf_and_nan PASSED [ 53%]
378s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_6_big_endian PASSED [ 53%]
378s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_6_little_endian PASSED [ 53%]
378s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_6_native_byte_order PASSED [ 53%]
378s tests/test_mrcfile.py::MrcFileTest::test_writing_image_stack_mode_2_native_byte_order PASSED [ 54%]
378s tests/test_mrcfile.py::MrcFileTest::test_writing_image_unsigned_bytes PASSED [ 54%]
378s tests/test_mrcfile.py::MrcFileTest::test_writing_volume_mode_1_native_byte_order PASSED [ 54%]
378s tests/test_mrcfile.py::MrcFileTest::test_writing_volume_stack_mode_1_native_byte_order PASSED [ 54%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_1d_data_raises_exception PASSED [ 54%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_5d_data_raises_exception PASSED [ 54%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_add_label_with_normal_string PASSED [ 54%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_adding_more_than_ten_labels_raises_exception PASSED [ 54%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_adding_non_ascii_label_raises_exception PASSED [ 55%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_adding_non_printable_label_raises_exception PASSED [ 55%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_adding_too_long_label_raises_exception PASSED [ 55%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_attributes_are_empty_after_init PASSED [ 55%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_calling_setters_raises_exception_if_read_only PASSED [ 55%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_can_call_set_image_stack_when_already_an_image_stack PASSED [ 55%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_can_call_set_volume_when_already_a_volume PASSED [ 55%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_check_writeable PASSED [ 55%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_complex128_dtype_raises_exception PASSED [ 55%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_complex256_dtype_raises_exception PASSED [ 56%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_complex64_dtype_is_preserved_in_mode_4 PASSED [ 56%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_data_array_too_big_raises_exception PASSED [ 56%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_data_is_not_copied_unnecessarily PASSED [ 56%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_default_data_is_correct PASSED [ 56%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_default_extended_header_is_correct PASSED [ 56%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_default_header_is_correct PASSED [ 56%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_float16_dtype_is_preserved_in_mode_12 PASSED [ 56%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_float32_dtype_is_preserved_in_mode_2 PASSED [ 57%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_float64_dtype_raises_exception PASSED [ 57%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_get_labels PASSED [ 57%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_get_labels_strips_unprintable_characters PASSED [ 57%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_getting_nstart PASSED [ 57%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_getting_voxel_size PASSED [ 57%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_header_byte_order_is_changed_by_data_with_opposite_order PASSED [ 57%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_header_byte_order_is_unchanged_by_data_with_native_order PASSED [ 57%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_header_byte_order_is_unchanged_by_data_with_no_order PASSED [ 57%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_header_is_correct_for_2d_data PASSED [ 58%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_header_is_correct_for_3d_data PASSED [ 58%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_header_is_correct_for_4d_data PASSED [ 58%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_header_stats_are_undetermined_after_setting_empty_complex_data PASSED [ 58%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_header_stats_are_undetermined_after_setting_empty_data PASSED [ 58%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_header_stats_setting_complex_data PASSED [ 58%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_image_stack_with_new_3d_data_is_still_image_stack PASSED [ 58%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_incorrect_machine_stamp PASSED [ 58%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_incorrect_map_id PASSED [ 58%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_int16_dtype_is_preserved_in_mode_1 PASSED [ 59%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_int32_dtype_raises_exception PASSED [ 59%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_int8_dtype_is_preserved_in_mode_0 PASSED [ 59%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_new_header_contains_creator_label PASSED [ 59%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_new_header_stats_are_undetermined PASSED [ 59%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_non_c_contiguous_data_is_made_c_contiguous PASSED [ 59%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_permissive_read_mode_with_file_too_small_for_data PASSED [ 59%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_permissive_read_mode_with_file_too_small_for_extended_header PASSED [ 59%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_permissive_read_mode_with_wrong_map_id_and_machine_stamp PASSED [ 60%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_print_header PASSED [ 60%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_removing_extended_header PASSED [ 60%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_replacing_extended_header_different_size PASSED [ 60%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_replacing_extended_header_same_size PASSED [ 60%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_replacing_extended_header_too_big PASSED [ 60%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_reset_header_stats_are_undetermined PASSED [ 60%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_data_attribute_raises_exception PASSED [ 60%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_extended_header PASSED [ 60%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_extended_header_attribute_raises_exception PASSED [ 61%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_header_attribute_raises_exception PASSED [ 61%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_nstart_as_modified_array PASSED [ 61%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_nstart_as_single_number PASSED [ 61%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_nstart_as_tuple PASSED [ 61%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_origin_as_separate_fields PASSED [ 61%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_origin_as_single_field PASSED [ 61%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_origin_as_single_tuple PASSED [ 61%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_voxel_size_as_modified_array PASSED [ 61%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_voxel_size_as_single_number PASSED [ 62%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_voxel_size_as_tuple PASSED [ 62%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_short_but_valid_map_id PASSED [ 62%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_stats_are_updated_for_new_data PASSED [ 62%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_stats_are_updated_on_request PASSED [ 62%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_stream_too_short PASSED [ 62%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_stream_writing_and_reading PASSED [ 62%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_switching_2d_data_to_image_stack_raises_exception PASSED [ 62%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_switching_2d_data_to_volume_raises_exception PASSED [ 63%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_switching_4d_data_to_image_stack_raises_exception PASSED [ 63%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_switching_4d_data_to_volume_raises_exception PASSED [ 63%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_switching_image_stack_to_volume PASSED [ 63%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_switching_volume_to_image_stack PASSED [ 63%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_uint16_dtype_is_preserved_in_mode_6 PASSED [ 63%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_uint8_dtype_is_widened_in_mode_6 PASSED [ 63%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_validate PASSED   [ 63%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_volume_stack_spacegroup_is_preserved_for_4d_data PASSED [ 63%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_warning_for_stats_with_inf PASSED [ 64%]
378s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_warning_for_stats_with_nan PASSED [ 64%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_1d_data_raises_exception PASSED [ 64%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_5d_data_raises_exception PASSED [ 64%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_absent_extended_header_is_read_as_zero_length_array PASSED [ 64%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_add_label_with_normal_string PASSED [ 64%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_adding_more_than_ten_labels_raises_exception PASSED [ 64%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_adding_non_ascii_label_raises_exception PASSED [ 64%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_adding_non_printable_label_raises_exception PASSED [ 65%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_adding_too_long_label_raises_exception PASSED [ 65%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_attributes_are_empty_after_init PASSED [ 65%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_calling_setters_raises_exception_if_read_only PASSED [ 65%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_can_call_set_image_stack_when_already_an_image_stack PASSED [ 65%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_can_call_set_volume_when_already_a_volume PASSED [ 65%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_can_deliberately_overwrite_file PASSED [ 65%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_can_edit_data_in_read_write_mode PASSED [ 65%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_can_edit_header_in_read_write_mode PASSED [ 65%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_can_read_and_flush_stream_repeatedly PASSED [ 66%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_cannot_accidentally_overwrite_file PASSED [ 66%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_cannot_edit_data_in_read_only_mode PASSED [ 66%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_cannot_edit_extended_header_in_read_only_mode PASSED [ 66%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_cannot_edit_header_in_read_only_mode PASSED [ 66%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_cannot_set_extended_header_in_read_only_mode PASSED [ 66%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_cannot_use_invalid_file_modes PASSED [ 66%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_check_writeable PASSED      [ 66%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_complex128_dtype_raises_exception PASSED [ 66%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_complex256_dtype_raises_exception PASSED [ 67%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_complex64_dtype_is_preserved_in_mode_4 PASSED [ 67%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_creating_extended_header PASSED [ 67%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_data_array_cannot_be_changed_after_closing_file PASSED [ 67%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_data_array_too_big_raises_exception PASSED [ 67%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_data_is_not_copied_unnecessarily PASSED [ 67%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_data_is_not_read_if_dimensions_are_too_huge PASSED [ 67%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_data_transposed_in_place_is_written_without_errors PASSED [ 67%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_data_values_are_correct PASSED [ 68%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_default_data_is_correct PASSED [ 68%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_default_extended_header_is_correct PASSED [ 68%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_default_header_is_correct PASSED [ 68%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_exception_raised_if_file_is_too_small_for_reading_data PASSED [ 68%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_exception_raised_if_file_is_too_small_for_reading_extended_header PASSED [ 68%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_extended_header_is_read_correctly PASSED [ 68%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_extended_header_with_incorrect_type PASSED [ 68%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_float16_dtype_is_preserved_in_mode_12 PASSED [ 68%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_float32_dtype_is_preserved_in_mode_2 PASSED [ 69%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_float64_dtype_raises_exception PASSED [ 69%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_get_labels PASSED           [ 69%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_get_labels_strips_unprintable_characters PASSED [ 69%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_getting_nstart PASSED       [ 69%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_getting_voxel_size PASSED   [ 69%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_header_byte_order_is_changed_by_data_with_opposite_order PASSED [ 69%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_header_byte_order_is_unchanged_by_data_with_native_order PASSED [ 69%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_header_byte_order_is_unchanged_by_data_with_no_order PASSED [ 69%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_header_is_correct_for_2d_data PASSED [ 70%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_header_is_correct_for_3d_data PASSED [ 70%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_header_is_correct_for_4d_data PASSED [ 70%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_header_only_mode_does_not_read_data PASSED [ 70%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_header_stats_are_undetermined_after_setting_empty_complex_data PASSED [ 70%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_header_stats_are_undetermined_after_setting_empty_data PASSED [ 70%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_header_stats_setting_complex_data PASSED [ 70%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_image_stack_with_new_3d_data_is_still_image_stack PASSED [ 70%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_indexed_extended_header_from_FEI1_file PASSED [ 71%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_indexed_extended_header_from_FEI2_file PASSED [ 71%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_int16_dtype_is_preserved_in_mode_1 PASSED [ 71%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_int32_dtype_raises_exception PASSED [ 71%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_int8_dtype_is_preserved_in_mode_0 PASSED [ 71%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_machine_stamp_is_read_correctly PASSED [ 71%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_new_header_contains_creator_label PASSED [ 71%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_new_header_stats_are_undetermined PASSED [ 71%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_non_c_contiguous_data_is_made_c_contiguous PASSED [ 71%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_non_mrc_file_gives_correct_warnings_in_permissive_mode PASSED [ 72%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_non_mrc_file_is_rejected PASSED [ 72%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_opening_file_with_unknown_mode PASSED [ 72%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_opening_nonexistent_file PASSED [ 72%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_opening_with_pathlib PASSED [ 72%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_permissive_read_with_wrong_machine_stamp PASSED [ 72%]
378s tests/test_mrcmemmap.py::MrcMemmapTest::test_print_header PASSED         [ 72%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_removing_extended_header PASSED [ 72%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_replacing_extended_header_different_size PASSED [ 73%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_replacing_extended_header_same_size PASSED [ 73%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_replacing_extended_header_too_big PASSED [ 73%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_repr PASSED                 [ 73%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_reset_header_stats_are_undetermined PASSED [ 73%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_data_attribute_raises_exception PASSED [ 73%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_extended_header PASSED [ 73%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_extended_header_attribute_raises_exception PASSED [ 73%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_header_attribute_raises_exception PASSED [ 73%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_nstart_as_modified_array PASSED [ 74%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_nstart_as_single_number PASSED [ 74%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_nstart_as_tuple PASSED [ 74%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_origin_as_separate_fields PASSED [ 74%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_origin_as_single_field PASSED [ 74%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_origin_as_single_tuple PASSED [ 74%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_voxel_size_as_modified_array PASSED [ 74%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_voxel_size_as_single_number PASSED [ 74%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_voxel_size_as_tuple PASSED [ 74%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_stats_are_updated_for_new_data PASSED [ 75%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_stats_are_updated_on_request PASSED [ 75%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_stream_can_be_read_again PASSED [ 75%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_switching_2d_data_to_image_stack_raises_exception PASSED [ 75%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_switching_2d_data_to_volume_raises_exception PASSED [ 75%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_switching_4d_data_to_image_stack_raises_exception PASSED [ 75%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_switching_4d_data_to_volume_raises_exception PASSED [ 75%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_switching_image_stack_to_volume PASSED [ 75%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_switching_volume_to_image_stack PASSED [ 76%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_transposed_data_is_made_contiguous_on_set PASSED [ 76%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_uint16_dtype_is_preserved_in_mode_6 PASSED [ 76%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_uint8_dtype_is_widened_in_mode_6 PASSED [ 76%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_validate PASSED             [ 76%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_volume_stack_spacegroup_is_preserved_for_4d_data PASSED [ 76%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_voxel_size_is_read_correctly PASSED [ 76%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_warning_for_stats_with_inf PASSED [ 76%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_warning_for_stats_with_nan PASSED [ 76%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_warning_issued_if_file_is_too_large PASSED [ 77%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_float16 PASSED [ 77%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_0 PASSED [ 77%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_1_big_endian PASSED [ 77%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_1_little_endian PASSED [ 77%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_1_native_byte_order PASSED [ 77%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_2_big_endian PASSED [ 77%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_2_little_endian PASSED [ 77%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_2_native_byte_order PASSED [ 77%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_2_with_inf_and_nan PASSED [ 78%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_4_big_endian PASSED [ 78%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_4_little_endian PASSED [ 78%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_4_native_byte_order PASSED [ 78%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_4_with_inf_and_nan PASSED [ 78%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_6_big_endian PASSED [ 78%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_6_little_endian PASSED [ 78%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_6_native_byte_order PASSED [ 78%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_stack_mode_2_native_byte_order PASSED [ 79%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_unsigned_bytes PASSED [ 79%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_volume_mode_1_native_byte_order PASSED [ 79%]
379s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_volume_stack_mode_1_native_byte_order PASSED [ 79%]
379s tests/test_mrcobject.py::MrcObjectTest::test_1d_data_raises_exception PASSED [ 79%]
379s tests/test_mrcobject.py::MrcObjectTest::test_5d_data_raises_exception PASSED [ 79%]
379s tests/test_mrcobject.py::MrcObjectTest::test_add_label_with_normal_string PASSED [ 79%]
379s tests/test_mrcobject.py::MrcObjectTest::test_adding_more_than_ten_labels_raises_exception PASSED [ 79%]
379s tests/test_mrcobject.py::MrcObjectTest::test_adding_non_ascii_label_raises_exception PASSED [ 79%]
379s tests/test_mrcobject.py::MrcObjectTest::test_adding_non_printable_label_raises_exception PASSED [ 80%]
379s tests/test_mrcobject.py::MrcObjectTest::test_adding_too_long_label_raises_exception PASSED [ 80%]
379s tests/test_mrcobject.py::MrcObjectTest::test_attributes_are_empty_after_init PASSED [ 80%]
379s tests/test_mrcobject.py::MrcObjectTest::test_calling_setters_raises_exception_if_read_only PASSED [ 80%]
379s tests/test_mrcobject.py::MrcObjectTest::test_can_call_set_image_stack_when_already_an_image_stack PASSED [ 80%]
379s tests/test_mrcobject.py::MrcObjectTest::test_can_call_set_volume_when_already_a_volume PASSED [ 80%]
379s tests/test_mrcobject.py::MrcObjectTest::test_check_writeable PASSED      [ 80%]
379s tests/test_mrcobject.py::MrcObjectTest::test_complex128_dtype_raises_exception PASSED [ 80%]
379s tests/test_mrcobject.py::MrcObjectTest::test_complex256_dtype_raises_exception PASSED [ 80%]
379s tests/test_mrcobject.py::MrcObjectTest::test_complex64_dtype_is_preserved_in_mode_4 PASSED [ 81%]
379s tests/test_mrcobject.py::MrcObjectTest::test_data_array_too_big_raises_exception PASSED [ 81%]
379s tests/test_mrcobject.py::MrcObjectTest::test_data_is_not_copied_unnecessarily PASSED [ 81%]
379s tests/test_mrcobject.py::MrcObjectTest::test_default_data_is_correct PASSED [ 81%]
379s tests/test_mrcobject.py::MrcObjectTest::test_default_extended_header_is_correct PASSED [ 81%]
379s tests/test_mrcobject.py::MrcObjectTest::test_default_header_is_correct PASSED [ 81%]
379s tests/test_mrcobject.py::MrcObjectTest::test_float16_dtype_is_preserved_in_mode_12 PASSED [ 81%]
379s tests/test_mrcobject.py::MrcObjectTest::test_float32_dtype_is_preserved_in_mode_2 PASSED [ 81%]
379s tests/test_mrcobject.py::MrcObjectTest::test_float64_dtype_raises_exception PASSED [ 82%]
379s tests/test_mrcobject.py::MrcObjectTest::test_get_labels PASSED           [ 82%]
379s tests/test_mrcobject.py::MrcObjectTest::test_get_labels_strips_unprintable_characters PASSED [ 82%]
379s tests/test_mrcobject.py::MrcObjectTest::test_getting_nstart PASSED       [ 82%]
379s tests/test_mrcobject.py::MrcObjectTest::test_getting_voxel_size PASSED   [ 82%]
379s tests/test_mrcobject.py::MrcObjectTest::test_header_byte_order_is_changed_by_data_with_opposite_order PASSED [ 82%]
379s tests/test_mrcobject.py::MrcObjectTest::test_header_byte_order_is_unchanged_by_data_with_native_order PASSED [ 82%]
379s tests/test_mrcobject.py::MrcObjectTest::test_header_byte_order_is_unchanged_by_data_with_no_order PASSED [ 82%]
379s tests/test_mrcobject.py::MrcObjectTest::test_header_is_correct_for_2d_data PASSED [ 82%]
379s tests/test_mrcobject.py::MrcObjectTest::test_header_is_correct_for_3d_data PASSED [ 83%]
379s tests/test_mrcobject.py::MrcObjectTest::test_header_is_correct_for_4d_data PASSED [ 83%]
379s tests/test_mrcobject.py::MrcObjectTest::test_header_stats_are_undetermined_after_setting_empty_complex_data PASSED [ 83%]
379s tests/test_mrcobject.py::MrcObjectTest::test_header_stats_are_undetermined_after_setting_empty_data PASSED [ 83%]
379s tests/test_mrcobject.py::MrcObjectTest::test_header_stats_setting_complex_data PASSED [ 83%]
379s tests/test_mrcobject.py::MrcObjectTest::test_image_stack_with_new_3d_data_is_still_image_stack PASSED [ 83%]
379s tests/test_mrcobject.py::MrcObjectTest::test_int16_dtype_is_preserved_in_mode_1 PASSED [ 83%]
379s tests/test_mrcobject.py::MrcObjectTest::test_int32_dtype_raises_exception PASSED [ 83%]
379s tests/test_mrcobject.py::MrcObjectTest::test_int8_dtype_is_preserved_in_mode_0 PASSED [ 84%]
379s tests/test_mrcobject.py::MrcObjectTest::test_new_header_contains_creator_label PASSED [ 84%]
379s tests/test_mrcobject.py::MrcObjectTest::test_new_header_stats_are_undetermined PASSED [ 84%]
379s tests/test_mrcobject.py::MrcObjectTest::test_non_c_contiguous_data_is_made_c_contiguous PASSED [ 84%]
379s tests/test_mrcobject.py::MrcObjectTest::test_print_header PASSED         [ 84%]
379s tests/test_mrcobject.py::MrcObjectTest::test_removing_extended_header PASSED [ 84%]
379s tests/test_mrcobject.py::MrcObjectTest::test_replacing_extended_header_different_size PASSED [ 84%]
379s tests/test_mrcobject.py::MrcObjectTest::test_replacing_extended_header_same_size PASSED [ 84%]
379s tests/test_mrcobject.py::MrcObjectTest::test_replacing_extended_header_too_big PASSED [ 84%]
379s tests/test_mrcobject.py::MrcObjectTest::test_reset_header_stats_are_undetermined PASSED [ 85%]
379s tests/test_mrcobject.py::MrcObjectTest::test_setting_data_attribute_raises_exception PASSED [ 85%]
379s tests/test_mrcobject.py::MrcObjectTest::test_setting_extended_header PASSED [ 85%]
379s tests/test_mrcobject.py::MrcObjectTest::test_setting_extended_header_attribute_raises_exception PASSED [ 85%]
379s tests/test_mrcobject.py::MrcObjectTest::test_setting_header_attribute_raises_exception PASSED [ 85%]
379s tests/test_mrcobject.py::MrcObjectTest::test_setting_nstart_as_modified_array PASSED [ 85%]
379s tests/test_mrcobject.py::MrcObjectTest::test_setting_nstart_as_single_number PASSED [ 85%]
379s tests/test_mrcobject.py::MrcObjectTest::test_setting_nstart_as_tuple PASSED [ 85%]
379s tests/test_mrcobject.py::MrcObjectTest::test_setting_origin_as_separate_fields PASSED [ 85%]
379s tests/test_mrcobject.py::MrcObjectTest::test_setting_origin_as_single_field PASSED [ 86%]
379s tests/test_mrcobject.py::MrcObjectTest::test_setting_origin_as_single_tuple PASSED [ 86%]
379s tests/test_mrcobject.py::MrcObjectTest::test_setting_voxel_size_as_modified_array PASSED [ 86%]
379s tests/test_mrcobject.py::MrcObjectTest::test_setting_voxel_size_as_single_number PASSED [ 86%]
379s tests/test_mrcobject.py::MrcObjectTest::test_setting_voxel_size_as_tuple PASSED [ 86%]
379s tests/test_mrcobject.py::MrcObjectTest::test_stats_are_updated_for_new_data PASSED [ 86%]
379s tests/test_mrcobject.py::MrcObjectTest::test_stats_are_updated_on_request PASSED [ 86%]
379s tests/test_mrcobject.py::MrcObjectTest::test_switching_2d_data_to_image_stack_raises_exception PASSED [ 86%]
379s tests/test_mrcobject.py::MrcObjectTest::test_switching_2d_data_to_volume_raises_exception PASSED [ 87%]
379s tests/test_mrcobject.py::MrcObjectTest::test_switching_4d_data_to_image_stack_raises_exception PASSED [ 87%]
379s tests/test_mrcobject.py::MrcObjectTest::test_switching_4d_data_to_volume_raises_exception PASSED [ 87%]
379s tests/test_mrcobject.py::MrcObjectTest::test_switching_image_stack_to_volume PASSED [ 87%]
379s tests/test_mrcobject.py::MrcObjectTest::test_switching_volume_to_image_stack PASSED [ 87%]
379s tests/test_mrcobject.py::MrcObjectTest::test_uint16_dtype_is_preserved_in_mode_6 PASSED [ 87%]
379s tests/test_mrcobject.py::MrcObjectTest::test_uint8_dtype_is_widened_in_mode_6 PASSED [ 87%]
379s tests/test_mrcobject.py::MrcObjectTest::test_validate PASSED             [ 87%]
379s tests/test_mrcobject.py::MrcObjectTest::test_volume_stack_spacegroup_is_preserved_for_4d_data PASSED [ 87%]
379s tests/test_mrcobject.py::MrcObjectTest::test_warning_for_stats_with_inf PASSED [ 88%]
379s tests/test_mrcobject.py::MrcObjectTest::test_warning_for_stats_with_nan PASSED [ 88%]
379s tests/test_utils.py::UtilsTest::test_big_byte_order_equals_native PASSED [ 88%]
379s tests/test_utils.py::UtilsTest::test_big_byte_orders_equal PASSED        [ 88%]
379s tests/test_utils.py::UtilsTest::test_big_endian_machine_stamp PASSED     [ 88%]
379s tests/test_utils.py::UtilsTest::test_bool_dtype_raises_exception PASSED  [ 88%]
379s tests/test_utils.py::UtilsTest::test_bytes_from_string_with_ascii_string PASSED [ 88%]
379s tests/test_utils.py::UtilsTest::test_bytes_from_string_with_non_ascii_string_raises_exception PASSED [ 88%]
379s tests/test_utils.py::UtilsTest::test_bytes_from_string_with_unicode_non_ascii_string_raises_exception PASSED [ 88%]
379s tests/test_utils.py::UtilsTest::test_bytes_from_string_with_unicode_string PASSED [ 89%]
379s tests/test_utils.py::UtilsTest::test_complex128_dtype_raises_exception PASSED [ 89%]
379s tests/test_utils.py::UtilsTest::test_complex64_dtype_is_converted_to_mode_4 PASSED [ 89%]
379s tests/test_utils.py::UtilsTest::test_empty_mode_array_raises_error PASSED [ 89%]
379s tests/test_utils.py::UtilsTest::test_equality_of_invalid_byte_orders PASSED [ 89%]
379s tests/test_utils.py::UtilsTest::test_float128_dtype_raises_exception PASSED [ 89%]
379s tests/test_utils.py::UtilsTest::test_float16_dtype_is_converted_to_mode_12 PASSED [ 89%]
379s tests/test_utils.py::UtilsTest::test_float32_dtype_is_converted_to_mode_2 PASSED [ 89%]
379s tests/test_utils.py::UtilsTest::test_float64_dtype_raises_exception PASSED [ 90%]
379s tests/test_utils.py::UtilsTest::test_header_dtype_is_correct_length PASSED [ 90%]
379s tests/test_utils.py::UtilsTest::test_int16_dtype_is_converted_to_mode_1 PASSED [ 90%]
379s tests/test_utils.py::UtilsTest::test_int32_dtype_raises_exception PASSED [ 90%]
379s tests/test_utils.py::UtilsTest::test_int64_dtype_raises_exception PASSED [ 90%]
379s tests/test_utils.py::UtilsTest::test_int8_dtype_is_converted_to_mode_0 PASSED [ 90%]
379s tests/test_utils.py::UtilsTest::test_is_printable_ascii_rejects_newline PASSED [ 90%]
379s tests/test_utils.py::UtilsTest::test_is_printable_ascii_rejects_non_ascii_printable_character PASSED [ 90%]
379s tests/test_utils.py::UtilsTest::test_is_printable_ascii_rejects_null_byte PASSED [ 90%]
379s tests/test_utils.py::UtilsTest::test_is_printable_ascii_rejects_other_unprintable_bytes PASSED [ 91%]
379s tests/test_utils.py::UtilsTest::test_is_printable_ascii_rejects_tab PASSED [ 91%]
379s tests/test_utils.py::UtilsTest::test_is_printable_ascii_with_printable_string PASSED [ 91%]
379s tests/test_utils.py::UtilsTest::test_little_byte_order_equals_native PASSED [ 91%]
379s tests/test_utils.py::UtilsTest::test_little_byte_orders_equal PASSED     [ 91%]
379s tests/test_utils.py::UtilsTest::test_little_endian_machine_stamp PASSED  [ 91%]
379s tests/test_utils.py::UtilsTest::test_mode_0_is_converted_to_int8 PASSED  [ 91%]
379s tests/test_utils.py::UtilsTest::test_mode_1_is_converted_to_int16 PASSED [ 91%]
379s tests/test_utils.py::UtilsTest::test_mode_2_is_converted_to_float32 PASSED [ 92%]
379s tests/test_utils.py::UtilsTest::test_mode_3_raises_exception PASSED      [ 92%]
379s tests/test_utils.py::UtilsTest::test_mode_4_is_converted_to_complex64 PASSED [ 92%]
379s tests/test_utils.py::UtilsTest::test_mode_6_is_converted_to_uint16 PASSED [ 92%]
379s tests/test_utils.py::UtilsTest::test_mode_array_with_two_items_raises_error PASSED [ 92%]
379s tests/test_utils.py::UtilsTest::test_mode_onedim_array_is_converted_without_error PASSED [ 92%]
379s tests/test_utils.py::UtilsTest::test_mode_scalar_is_converted_without_error PASSED [ 92%]
379s tests/test_utils.py::UtilsTest::test_mode_zerodim_array_is_converted_without_error PASSED [ 92%]
379s tests/test_utils.py::UtilsTest::test_native_byte_orders_equal PASSED     [ 92%]
379s tests/test_utils.py::UtilsTest::test_native_machine_stamp PASSED         [ 93%]
379s tests/test_utils.py::UtilsTest::test_normalise_big_endian_byte_order PASSED [ 93%]
379s tests/test_utils.py::UtilsTest::test_normalise_little_endian_byte_order PASSED [ 93%]
379s tests/test_utils.py::UtilsTest::test_normalise_native_byte_order PASSED  [ 93%]
379s tests/test_utils.py::UtilsTest::test_normalise_unknown_byte_orders PASSED [ 93%]
379s tests/test_utils.py::UtilsTest::test_object_dtype_raises_exception PASSED [ 93%]
379s tests/test_utils.py::UtilsTest::test_pretty_machine_stamp PASSED         [ 93%]
379s tests/test_utils.py::UtilsTest::test_printable_string_from_bytes_leaves_ascii_unchanged PASSED [ 93%]
379s tests/test_utils.py::UtilsTest::test_printable_string_from_bytes_strips_non_ascii_characters PASSED [ 93%]
379s tests/test_utils.py::UtilsTest::test_printable_string_from_bytes_strips_unprintable_characters PASSED [ 94%]
379s tests/test_utils.py::UtilsTest::test_spacegroup_is_volume_stack PASSED   [ 94%]
379s tests/test_utils.py::UtilsTest::test_string_dtype_raises_exception PASSED [ 94%]
379s tests/test_utils.py::UtilsTest::test_structured_dtype_raises_exception PASSED [ 94%]
379s tests/test_utils.py::UtilsTest::test_uint16_dtype_is_converted_to_mode_6 PASSED [ 94%]
379s tests/test_utils.py::UtilsTest::test_uint32_dtype_raises_exception PASSED [ 94%]
379s tests/test_utils.py::UtilsTest::test_uint64_dtype_raises_exception PASSED [ 94%]
379s tests/test_utils.py::UtilsTest::test_uint8_dtype_is_converted_to_mode_6 PASSED [ 94%]
379s tests/test_utils.py::UtilsTest::test_undefined_modes_raise_exception PASSED [ 95%]
379s tests/test_utils.py::UtilsTest::test_unequal_byte_orders PASSED          [ 95%]
379s tests/test_utils.py::UtilsTest::test_unicode_dtype_raises_exception PASSED [ 95%]
379s tests/test_utils.py::UtilsTest::test_unknown_byte_order_raises_exception PASSED [ 95%]
379s tests/test_validation.py::ValidationTest::test_bzip2_emdb_file PASSED    [ 95%]
379s tests/test_validation.py::ValidationTest::test_emdb_cryst_file PASSED    [ 95%]
379s tests/test_validation.py::ValidationTest::test_emdb_file PASSED          [ 95%]
379s tests/test_validation.py::ValidationTest::test_empty_labels_in_list PASSED [ 95%]
379s tests/test_validation.py::ValidationTest::test_file_too_large PASSED     [ 95%]
379s tests/test_validation.py::ValidationTest::test_file_too_small PASSED     [ 96%]
379s tests/test_validation.py::ValidationTest::test_good_file PASSED          [ 96%]
379s tests/test_validation.py::ValidationTest::test_gzip_emdb_file PASSED     [ 96%]
379s tests/test_validation.py::ValidationTest::test_incorrect_dmax PASSED     [ 96%]
379s tests/test_validation.py::ValidationTest::test_incorrect_dmean PASSED    [ 96%]
379s tests/test_validation.py::ValidationTest::test_incorrect_dmean_with_undetermined_dmin_and_dmax PASSED [ 96%]
379s tests/test_validation.py::ValidationTest::test_incorrect_dmin PASSED     [ 96%]
379s tests/test_validation.py::ValidationTest::test_incorrect_format_version PASSED [ 96%]
379s tests/test_validation.py::ValidationTest::test_incorrect_machine_stamp PASSED [ 96%]
379s tests/test_validation.py::ValidationTest::test_incorrect_map_id PASSED   [ 97%]
379s tests/test_validation.py::ValidationTest::test_incorrect_rms PASSED      [ 97%]
379s tests/test_validation.py::ValidationTest::test_invalid_axis_mapping PASSED [ 97%]
379s tests/test_validation.py::ValidationTest::test_invalid_mode PASSED       [ 97%]
379s tests/test_validation.py::ValidationTest::test_many_problems_simultaneously PASSED [ 97%]
379s tests/test_validation.py::ValidationTest::test_mean_undetermined PASSED  [ 97%]
379s tests/test_validation.py::ValidationTest::test_min_and_max_undetermined PASSED [ 97%]
379s tests/test_validation.py::ValidationTest::test_min_max_and_mean_undetermined PASSED [ 97%]
379s tests/test_validation.py::ValidationTest::test_missing_exttyp PASSED     [ 98%]
379s tests/test_validation.py::ValidationTest::test_mz_correct_for_volume_stack PASSED [ 98%]
379s tests/test_validation.py::ValidationTest::test_mz_incorrect_for_volume_stack PASSED [ 98%]
379s tests/test_validation.py::ValidationTest::test_negative_cella_x PASSED   [ 98%]
379s tests/test_validation.py::ValidationTest::test_negative_ispg PASSED      [ 98%]
379s tests/test_validation.py::ValidationTest::test_negative_mx PASSED        [ 98%]
379s tests/test_validation.py::ValidationTest::test_negative_my PASSED        [ 98%]
379s tests/test_validation.py::ValidationTest::test_negative_mz PASSED        [ 98%]
379s tests/test_validation.py::ValidationTest::test_negative_nlabl PASSED     [ 98%]
379s tests/test_validation.py::ValidationTest::test_nlabl_too_large PASSED    [ 99%]
379s tests/test_validation.py::ValidationTest::test_nlabl_too_small PASSED    [ 99%]
379s tests/test_validation.py::ValidationTest::test_old_format_version PASSED [ 99%]
379s tests/test_validation.py::ValidationTest::test_rms_undetermined PASSED   [ 99%]
379s tests/test_validation.py::ValidationTest::test_short_map_id PASSED       [ 99%]
379s tests/test_validation.py::ValidationTest::test_unknown_exttyp PASSED     [ 99%]
379s tests/test_validation.py::ValidationTest::test_validate_bad_files PASSED [ 99%]
379s tests/test_validation.py::ValidationTest::test_validate_good_and_bad_files PASSED [ 99%]
379s tests/test_validation.py::ValidationTest::test_validate_good_files PASSED [100%]
379s 
379s ============================= 863 passed in 10.50s =============================
379s Testing with python3.12: 
379s + echo Testing with python3.12: 
379s + python3.12 -m pytest tests -v
379s ============================= test session starts ==============================
379s platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.12
379s cachedir: .pytest_cache
379s rootdir: /tmp/autopkgtest.XPaVHw/build.Npp/src
379s plugins: typeguard-4.4.1
380s collecting ... collected 863 items
380s 
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_1d_data_raises_exception PASSED [  0%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_5d_data_raises_exception PASSED [  0%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_absent_extended_header_is_read_as_zero_length_array PASSED [  0%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_add_label_with_normal_string PASSED [  0%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_adding_more_than_ten_labels_raises_exception PASSED [  0%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_adding_non_ascii_label_raises_exception PASSED [  0%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_adding_non_printable_label_raises_exception PASSED [  0%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_adding_too_long_label_raises_exception PASSED [  0%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_attributes_are_empty_after_init PASSED [  1%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_calling_setters_raises_exception_if_read_only PASSED [  1%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_can_call_set_image_stack_when_already_an_image_stack PASSED [  1%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_can_call_set_volume_when_already_a_volume PASSED [  1%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_can_deliberately_overwrite_file PASSED [  1%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_can_edit_data_in_read_write_mode PASSED [  1%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_can_edit_header_in_read_write_mode PASSED [  1%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_can_read_and_flush_stream_repeatedly PASSED [  1%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_cannot_accidentally_overwrite_file PASSED [  1%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_cannot_edit_data_in_read_only_mode PASSED [  2%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_cannot_edit_extended_header_in_read_only_mode PASSED [  2%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_cannot_edit_header_in_read_only_mode PASSED [  2%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_cannot_set_extended_header_in_read_only_mode PASSED [  2%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_cannot_use_invalid_file_modes PASSED [  2%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_check_writeable PASSED [  2%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_complex128_dtype_raises_exception PASSED [  2%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_complex256_dtype_raises_exception PASSED [  2%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_complex64_dtype_is_preserved_in_mode_4 PASSED [  3%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_creating_extended_header PASSED [  3%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_data_array_too_big_raises_exception PASSED [  3%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_data_is_not_copied_unnecessarily PASSED [  3%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_data_is_not_read_if_dimensions_are_too_huge PASSED [  3%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_data_transposed_in_place_is_written_without_errors PASSED [  3%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_data_values_are_correct PASSED [  3%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_default_data_is_correct PASSED [  3%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_default_extended_header_is_correct PASSED [  3%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_default_header_is_correct PASSED [  4%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_exception_raised_if_file_is_too_small_for_reading_data PASSED [  4%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_exception_raised_if_file_is_too_small_for_reading_extended_header PASSED [  4%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_extended_header_is_read_correctly PASSED [  4%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_extended_header_with_incorrect_type PASSED [  4%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_float16_dtype_is_preserved_in_mode_12 PASSED [  4%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_float32_dtype_is_preserved_in_mode_2 PASSED [  4%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_float64_dtype_raises_exception PASSED [  4%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_get_labels PASSED     [  4%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_get_labels_strips_unprintable_characters PASSED [  5%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_getting_nstart PASSED [  5%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_getting_voxel_size PASSED [  5%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_header_byte_order_is_changed_by_data_with_opposite_order PASSED [  5%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_header_byte_order_is_unchanged_by_data_with_native_order PASSED [  5%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_header_byte_order_is_unchanged_by_data_with_no_order PASSED [  5%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_header_is_correct_for_2d_data PASSED [  5%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_header_is_correct_for_3d_data PASSED [  5%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_header_is_correct_for_4d_data PASSED [  6%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_header_only_mode_does_not_read_data PASSED [  6%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_header_stats_are_undetermined_after_setting_empty_complex_data PASSED [  6%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_header_stats_are_undetermined_after_setting_empty_data PASSED [  6%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_header_stats_setting_complex_data PASSED [  6%]
380s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_image_stack_with_new_3d_data_is_still_image_stack PASSED [  6%]
383s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_indexed_extended_header_from_FEI1_file PASSED [  6%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_indexed_extended_header_from_FEI2_file PASSED [  6%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_int16_dtype_is_preserved_in_mode_1 PASSED [  6%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_int32_dtype_raises_exception PASSED [  7%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_int8_dtype_is_preserved_in_mode_0 PASSED [  7%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_machine_stamp_is_read_correctly PASSED [  7%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_new_header_contains_creator_label PASSED [  7%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_new_header_stats_are_undetermined PASSED [  7%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_non_c_contiguous_data_is_made_c_contiguous PASSED [  7%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_non_mrc_file_gives_correct_warnings_in_permissive_mode PASSED [  7%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_non_mrc_file_is_rejected PASSED [  7%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_opening_file_with_unknown_mode PASSED [  7%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_opening_nonexistent_file PASSED [  8%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_opening_with_pathlib PASSED [  8%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_permissive_read_with_wrong_machine_stamp PASSED [  8%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_print_header PASSED   [  8%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_removing_extended_header PASSED [  8%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_replacing_extended_header_different_size PASSED [  8%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_replacing_extended_header_same_size PASSED [  8%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_replacing_extended_header_too_big PASSED [  8%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_repr PASSED           [  9%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_reset_header_stats_are_undetermined PASSED [  9%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_data_attribute_raises_exception PASSED [  9%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_extended_header PASSED [  9%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_extended_header_attribute_raises_exception PASSED [  9%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_header_attribute_raises_exception PASSED [  9%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_nstart_as_modified_array PASSED [  9%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_nstart_as_single_number PASSED [  9%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_nstart_as_tuple PASSED [  9%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_origin_as_separate_fields PASSED [ 10%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_origin_as_single_field PASSED [ 10%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_origin_as_single_tuple PASSED [ 10%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_voxel_size_as_modified_array PASSED [ 10%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_voxel_size_as_single_number PASSED [ 10%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_setting_voxel_size_as_tuple PASSED [ 10%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_stats_are_updated_for_new_data PASSED [ 10%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_stats_are_updated_on_request PASSED [ 10%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_stream_can_be_read_again PASSED [ 11%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_switching_2d_data_to_image_stack_raises_exception PASSED [ 11%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_switching_2d_data_to_volume_raises_exception PASSED [ 11%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_switching_4d_data_to_image_stack_raises_exception PASSED [ 11%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_switching_4d_data_to_volume_raises_exception PASSED [ 11%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_switching_image_stack_to_volume PASSED [ 11%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_switching_volume_to_image_stack PASSED [ 11%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_transposed_data_is_made_contiguous_on_set PASSED [ 11%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_uint16_dtype_is_preserved_in_mode_6 PASSED [ 11%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_uint8_dtype_is_widened_in_mode_6 PASSED [ 12%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_validate PASSED       [ 12%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_volume_stack_spacegroup_is_preserved_for_4d_data PASSED [ 12%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_voxel_size_is_read_correctly PASSED [ 12%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_warning_for_stats_with_inf PASSED [ 12%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_warning_for_stats_with_nan PASSED [ 12%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_warning_issued_if_file_is_too_large PASSED [ 12%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_float16 PASSED [ 12%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_0 PASSED [ 12%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_1_big_endian PASSED [ 13%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_1_little_endian PASSED [ 13%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_1_native_byte_order PASSED [ 13%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_2_big_endian PASSED [ 13%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_2_little_endian PASSED [ 13%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_2_native_byte_order PASSED [ 13%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_2_with_inf_and_nan PASSED [ 13%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_4_big_endian PASSED [ 13%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_4_little_endian PASSED [ 14%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_4_native_byte_order PASSED [ 14%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_4_with_inf_and_nan PASSED [ 14%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_6_big_endian PASSED [ 14%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_6_little_endian PASSED [ 14%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_mode_6_native_byte_order PASSED [ 14%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_stack_mode_2_native_byte_order PASSED [ 14%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_image_unsigned_bytes PASSED [ 14%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_volume_mode_1_native_byte_order PASSED [ 14%]
386s tests/test_bzip2mrcfile.py::Bzip2MrcFileTest::test_writing_volume_stack_mode_1_native_byte_order PASSED [ 15%]
386s tests/test_command_line.py::CommandLineTest::test_print_header PASSED    [ 15%]
386s tests/test_command_line.py::CommandLineTest::test_print_header_no_args PASSED [ 15%]
386s tests/test_command_line.py::CommandLineTest::test_print_header_nonexistent_file PASSED [ 15%]
386s tests/test_command_line.py::CommandLineTest::test_validate PASSED        [ 15%]
386s tests/test_command_line.py::CommandLineTest::test_validate_no_args PASSED [ 15%]
386s tests/test_dtypes.py::DtypesTest::test_fei1_ext_header_with_big_endian_byte_order PASSED [ 15%]
386s tests/test_dtypes.py::DtypesTest::test_fei1_ext_header_with_little_endian_byte_order PASSED [ 15%]
386s tests/test_dtypes.py::DtypesTest::test_fei1_ext_header_with_native_byte_order PASSED [ 15%]
386s tests/test_dtypes.py::DtypesTest::test_fei2_ext_header_with_big_endian_byte_order PASSED [ 16%]
386s tests/test_dtypes.py::DtypesTest::test_fei2_ext_header_with_little_endian_byte_order PASSED [ 16%]
386s tests/test_dtypes.py::DtypesTest::test_fei2_ext_header_with_native_byte_order PASSED [ 16%]
386s tests/test_dtypes.py::DtypesTest::test_invalid_byte_order_raises_exception PASSED [ 16%]
386s tests/test_future_mrcfile.py::FutureMrcFileTest::test_add_done_callback PASSED [ 16%]
386s tests/test_future_mrcfile.py::FutureMrcFileTest::test_arguments_passed_correctly PASSED [ 16%]
386s tests/test_future_mrcfile.py::FutureMrcFileTest::test_cancel PASSED      [ 16%]
386s tests/test_future_mrcfile.py::FutureMrcFileTest::test_cancelled PASSED   [ 16%]
386s tests/test_future_mrcfile.py::FutureMrcFileTest::test_exception PASSED   [ 17%]
386s tests/test_future_mrcfile.py::FutureMrcFileTest::test_running_and_done_status PASSED [ 17%]
386s tests/test_future_mrcfile.py::FutureMrcFileTest::test_timeout_from_exception PASSED [ 17%]
386s tests/test_future_mrcfile.py::FutureMrcFileTest::test_timeout_from_result PASSED [ 17%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_1d_data_raises_exception PASSED [ 17%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_5d_data_raises_exception PASSED [ 17%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_absent_extended_header_is_read_as_zero_length_array PASSED [ 17%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_add_label_with_normal_string PASSED [ 17%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_adding_more_than_ten_labels_raises_exception PASSED [ 17%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_adding_non_ascii_label_raises_exception PASSED [ 18%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_adding_non_printable_label_raises_exception PASSED [ 18%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_adding_too_long_label_raises_exception PASSED [ 18%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_attributes_are_empty_after_init PASSED [ 18%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_calling_setters_raises_exception_if_read_only PASSED [ 18%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_can_call_set_image_stack_when_already_an_image_stack PASSED [ 18%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_can_call_set_volume_when_already_a_volume PASSED [ 18%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_can_deliberately_overwrite_file PASSED [ 18%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_can_edit_data_in_read_write_mode PASSED [ 19%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_can_edit_header_in_read_write_mode PASSED [ 19%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_can_read_and_flush_stream_repeatedly PASSED [ 19%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_cannot_accidentally_overwrite_file PASSED [ 19%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_cannot_edit_data_in_read_only_mode PASSED [ 19%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_cannot_edit_extended_header_in_read_only_mode PASSED [ 19%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_cannot_edit_header_in_read_only_mode PASSED [ 19%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_cannot_set_extended_header_in_read_only_mode PASSED [ 19%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_cannot_use_invalid_file_modes PASSED [ 19%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_check_writeable PASSED  [ 20%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_complex128_dtype_raises_exception PASSED [ 20%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_complex256_dtype_raises_exception PASSED [ 20%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_complex64_dtype_is_preserved_in_mode_4 PASSED [ 20%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_creating_extended_header PASSED [ 20%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_data_array_too_big_raises_exception PASSED [ 20%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_data_is_not_copied_unnecessarily PASSED [ 20%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_data_is_not_read_if_dimensions_are_too_huge PASSED [ 20%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_data_transposed_in_place_is_written_without_errors PASSED [ 20%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_data_values_are_correct PASSED [ 21%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_default_data_is_correct PASSED [ 21%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_default_extended_header_is_correct PASSED [ 21%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_default_header_is_correct PASSED [ 21%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_exception_raised_if_file_is_too_small_for_reading_data PASSED [ 21%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_exception_raised_if_file_is_too_small_for_reading_extended_header PASSED [ 21%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_extended_header_is_read_correctly PASSED [ 21%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_extended_header_with_incorrect_type PASSED [ 21%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_float16_dtype_is_preserved_in_mode_12 PASSED [ 22%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_float32_dtype_is_preserved_in_mode_2 PASSED [ 22%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_float64_dtype_raises_exception PASSED [ 22%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_get_labels PASSED       [ 22%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_get_labels_strips_unprintable_characters PASSED [ 22%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_getting_nstart PASSED   [ 22%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_getting_voxel_size PASSED [ 22%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_header_byte_order_is_changed_by_data_with_opposite_order PASSED [ 22%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_header_byte_order_is_unchanged_by_data_with_native_order PASSED [ 22%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_header_byte_order_is_unchanged_by_data_with_no_order PASSED [ 23%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_header_is_correct_for_2d_data PASSED [ 23%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_header_is_correct_for_3d_data PASSED [ 23%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_header_is_correct_for_4d_data PASSED [ 23%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_header_only_mode_does_not_read_data PASSED [ 23%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_header_stats_are_undetermined_after_setting_empty_complex_data PASSED [ 23%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_header_stats_are_undetermined_after_setting_empty_data PASSED [ 23%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_header_stats_setting_complex_data PASSED [ 23%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_image_stack_with_new_3d_data_is_still_image_stack PASSED [ 23%]
386s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_indexed_extended_header_from_FEI1_file PASSED [ 24%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_indexed_extended_header_from_FEI2_file PASSED [ 24%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_int16_dtype_is_preserved_in_mode_1 PASSED [ 24%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_int32_dtype_raises_exception PASSED [ 24%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_int8_dtype_is_preserved_in_mode_0 PASSED [ 24%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_machine_stamp_is_read_correctly PASSED [ 24%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_new_header_contains_creator_label PASSED [ 24%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_new_header_stats_are_undetermined PASSED [ 24%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_non_c_contiguous_data_is_made_c_contiguous PASSED [ 25%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_non_mrc_file_gives_correct_warnings_in_permissive_mode PASSED [ 25%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_non_mrc_file_is_rejected PASSED [ 25%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_opening_file_with_unknown_mode PASSED [ 25%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_opening_nonexistent_file PASSED [ 25%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_opening_with_pathlib PASSED [ 25%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_permissive_read_with_wrong_machine_stamp PASSED [ 25%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_print_header PASSED     [ 25%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_removing_extended_header PASSED [ 25%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_replacing_extended_header_different_size PASSED [ 26%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_replacing_extended_header_same_size PASSED [ 26%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_replacing_extended_header_too_big PASSED [ 26%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_repr PASSED             [ 26%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_reset_header_stats_are_undetermined PASSED [ 26%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_data_attribute_raises_exception PASSED [ 26%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_extended_header PASSED [ 26%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_extended_header_attribute_raises_exception PASSED [ 26%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_header_attribute_raises_exception PASSED [ 26%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_nstart_as_modified_array PASSED [ 27%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_nstart_as_single_number PASSED [ 27%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_nstart_as_tuple PASSED [ 27%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_origin_as_separate_fields PASSED [ 27%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_origin_as_single_field PASSED [ 27%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_origin_as_single_tuple PASSED [ 27%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_voxel_size_as_modified_array PASSED [ 27%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_voxel_size_as_single_number PASSED [ 27%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_setting_voxel_size_as_tuple PASSED [ 28%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_stats_are_updated_for_new_data PASSED [ 28%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_stats_are_updated_on_request PASSED [ 28%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_stream_can_be_read_again PASSED [ 28%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_switching_2d_data_to_image_stack_raises_exception PASSED [ 28%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_switching_2d_data_to_volume_raises_exception PASSED [ 28%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_switching_4d_data_to_image_stack_raises_exception PASSED [ 28%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_switching_4d_data_to_volume_raises_exception PASSED [ 28%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_switching_image_stack_to_volume PASSED [ 28%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_switching_volume_to_image_stack PASSED [ 29%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_transposed_data_is_made_contiguous_on_set PASSED [ 29%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_uint16_dtype_is_preserved_in_mode_6 PASSED [ 29%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_uint8_dtype_is_widened_in_mode_6 PASSED [ 29%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_validate PASSED         [ 29%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_volume_stack_spacegroup_is_preserved_for_4d_data PASSED [ 29%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_voxel_size_is_read_correctly PASSED [ 29%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_warning_for_stats_with_inf PASSED [ 29%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_warning_for_stats_with_nan PASSED [ 30%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_warning_issued_if_file_is_too_large PASSED [ 30%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_float16 PASSED [ 30%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_0 PASSED [ 30%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_1_big_endian PASSED [ 30%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_1_little_endian PASSED [ 30%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_1_native_byte_order PASSED [ 30%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_2_big_endian PASSED [ 30%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_2_little_endian PASSED [ 30%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_2_native_byte_order PASSED [ 31%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_2_with_inf_and_nan PASSED [ 31%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_4_big_endian PASSED [ 31%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_4_little_endian PASSED [ 31%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_4_native_byte_order PASSED [ 31%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_4_with_inf_and_nan PASSED [ 31%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_6_big_endian PASSED [ 31%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_6_little_endian PASSED [ 31%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_mode_6_native_byte_order PASSED [ 31%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_stack_mode_2_native_byte_order PASSED [ 32%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_image_unsigned_bytes PASSED [ 32%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_volume_mode_1_native_byte_order PASSED [ 32%]
387s tests/test_gzipmrcfile.py::GzipMrcFileTest::test_writing_volume_stack_mode_1_native_byte_order PASSED [ 32%]
387s tests/test_load_functions.py::LoadFunctionTest::test_bzip2_opening PASSED [ 32%]
387s tests/test_load_functions.py::LoadFunctionTest::test_error_in_bzip2_opening_raises_new_exception PASSED [ 32%]
387s tests/test_load_functions.py::LoadFunctionTest::test_error_in_gzip_opening_raises_new_exception PASSED [ 32%]
387s tests/test_load_functions.py::LoadFunctionTest::test_error_overwriting_file_with_open_function PASSED [ 32%]
387s tests/test_load_functions.py::LoadFunctionTest::test_gzip_opening PASSED [ 33%]
387s tests/test_load_functions.py::LoadFunctionTest::test_gzipped_non_mrc_file_raises_exception PASSED [ 33%]
387s tests/test_load_functions.py::LoadFunctionTest::test_header_only_opening PASSED [ 33%]
387s tests/test_load_functions.py::LoadFunctionTest::test_invalid_mode_raises_exception PASSED [ 33%]
387s tests/test_load_functions.py::LoadFunctionTest::test_mmap_opening PASSED [ 33%]
387s tests/test_load_functions.py::LoadFunctionTest::test_new_bzip2_file PASSED [ 33%]
387s tests/test_load_functions.py::LoadFunctionTest::test_new_empty_file PASSED [ 33%]
387s tests/test_load_functions.py::LoadFunctionTest::test_new_empty_file_with_open_function PASSED [ 33%]
387s tests/test_load_functions.py::LoadFunctionTest::test_new_file_with_data PASSED [ 33%]
387s tests/test_load_functions.py::LoadFunctionTest::test_new_gzip_file PASSED [ 34%]
387s tests/test_load_functions.py::LoadFunctionTest::test_new_mmap PASSED     [ 34%]
387s tests/test_load_functions.py::LoadFunctionTest::test_new_mmap_with_extended_header PASSED [ 34%]
387s tests/test_load_functions.py::LoadFunctionTest::test_new_mmap_with_extended_header_too_big PASSED [ 34%]
387s tests/test_load_functions.py::LoadFunctionTest::test_new_mmap_with_shape_too_big PASSED [ 34%]
387s tests/test_load_functions.py::LoadFunctionTest::test_non_mrc_file_raises_exception PASSED [ 34%]
387s tests/test_load_functions.py::LoadFunctionTest::test_normal_opening PASSED [ 34%]
387s tests/test_load_functions.py::LoadFunctionTest::test_normal_opening_pathlib PASSED [ 34%]
387s tests/test_load_functions.py::LoadFunctionTest::test_opening_nonexistent_file PASSED [ 34%]
387s tests/test_load_functions.py::LoadFunctionTest::test_overwriting_flag PASSED [ 35%]
387s tests/test_load_functions.py::LoadFunctionTest::test_read PASSED         [ 35%]
387s tests/test_load_functions.py::LoadFunctionTest::test_simple_async_opening PASSED [ 35%]
387s tests/test_load_functions.py::LoadFunctionTest::test_slow_async_opening PASSED [ 35%]
387s tests/test_load_functions.py::LoadFunctionTest::test_switching_mode PASSED [ 35%]
387s tests/test_load_functions.py::LoadFunctionTest::test_unknown_compression_type PASSED [ 35%]
387s tests/test_load_functions.py::LoadFunctionTest::test_write PASSED        [ 35%]
387s tests/test_load_functions.py::LoadFunctionTest::test_write_with_auto_compression PASSED [ 35%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_bzip2_opening PASSED [ 36%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_error_in_bzip2_opening_raises_new_exception PASSED [ 36%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_error_in_gzip_opening_raises_new_exception PASSED [ 36%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_error_overwriting_file_with_open_function PASSED [ 36%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_gzip_opening PASSED [ 36%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_gzipped_non_mrc_file_raises_exception PASSED [ 36%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_header_only_opening PASSED [ 36%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_invalid_mode_raises_exception PASSED [ 36%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_mmap_opening PASSED [ 36%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_new_bzip2_file PASSED [ 37%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_new_empty_file PASSED [ 37%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_new_empty_file_with_open_function PASSED [ 37%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_new_file_with_data PASSED [ 37%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_new_gzip_file PASSED [ 37%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_new_mmap PASSED [ 37%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_new_mmap_with_extended_header PASSED [ 37%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_new_mmap_with_extended_header_too_big PASSED [ 37%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_new_mmap_with_shape_too_big PASSED [ 38%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_non_mrc_file_raises_exception PASSED [ 38%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_normal_opening PASSED [ 38%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_normal_opening_pathlib PASSED [ 38%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_opening_nonexistent_file PASSED [ 38%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_overwriting_flag PASSED [ 38%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_read PASSED [ 38%]
387s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_simple_async_opening PASSED [ 38%]
388s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_slow_async_opening PASSED [ 38%]
388s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_switching_mode PASSED [ 39%]
388s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_unknown_compression_type PASSED [ 39%]
388s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_write PASSED [ 39%]
388s tests/test_load_functions.py::LoadFunctionTestWithPathlib::test_write_with_auto_compression PASSED [ 39%]
388s tests/test_mrcfile.py::MrcFileTest::test_1d_data_raises_exception PASSED [ 39%]
388s tests/test_mrcfile.py::MrcFileTest::test_5d_data_raises_exception PASSED [ 39%]
388s tests/test_mrcfile.py::MrcFileTest::test_absent_extended_header_is_read_as_zero_length_array PASSED [ 39%]
388s tests/test_mrcfile.py::MrcFileTest::test_add_label_with_normal_string PASSED [ 39%]
388s tests/test_mrcfile.py::MrcFileTest::test_adding_more_than_ten_labels_raises_exception PASSED [ 39%]
388s tests/test_mrcfile.py::MrcFileTest::test_adding_non_ascii_label_raises_exception PASSED [ 40%]
388s tests/test_mrcfile.py::MrcFileTest::test_adding_non_printable_label_raises_exception PASSED [ 40%]
388s tests/test_mrcfile.py::MrcFileTest::test_adding_too_long_label_raises_exception PASSED [ 40%]
388s tests/test_mrcfile.py::MrcFileTest::test_attributes_are_empty_after_init PASSED [ 40%]
388s tests/test_mrcfile.py::MrcFileTest::test_calling_setters_raises_exception_if_read_only PASSED [ 40%]
388s tests/test_mrcfile.py::MrcFileTest::test_can_call_set_image_stack_when_already_an_image_stack PASSED [ 40%]
388s tests/test_mrcfile.py::MrcFileTest::test_can_call_set_volume_when_already_a_volume PASSED [ 40%]
388s tests/test_mrcfile.py::MrcFileTest::test_can_deliberately_overwrite_file PASSED [ 40%]
388s tests/test_mrcfile.py::MrcFileTest::test_can_edit_data_in_read_write_mode PASSED [ 41%]
388s tests/test_mrcfile.py::MrcFileTest::test_can_edit_header_in_read_write_mode PASSED [ 41%]
388s tests/test_mrcfile.py::MrcFileTest::test_can_read_and_flush_stream_repeatedly PASSED [ 41%]
388s tests/test_mrcfile.py::MrcFileTest::test_cannot_accidentally_overwrite_file PASSED [ 41%]
388s tests/test_mrcfile.py::MrcFileTest::test_cannot_edit_data_in_read_only_mode PASSED [ 41%]
388s tests/test_mrcfile.py::MrcFileTest::test_cannot_edit_extended_header_in_read_only_mode PASSED [ 41%]
388s tests/test_mrcfile.py::MrcFileTest::test_cannot_edit_header_in_read_only_mode PASSED [ 41%]
388s tests/test_mrcfile.py::MrcFileTest::test_cannot_set_extended_header_in_read_only_mode PASSED [ 41%]
388s tests/test_mrcfile.py::MrcFileTest::test_cannot_use_invalid_file_modes PASSED [ 41%]
388s tests/test_mrcfile.py::MrcFileTest::test_check_writeable PASSED          [ 42%]
388s tests/test_mrcfile.py::MrcFileTest::test_complex128_dtype_raises_exception PASSED [ 42%]
388s tests/test_mrcfile.py::MrcFileTest::test_complex256_dtype_raises_exception PASSED [ 42%]
388s tests/test_mrcfile.py::MrcFileTest::test_complex64_dtype_is_preserved_in_mode_4 PASSED [ 42%]
388s tests/test_mrcfile.py::MrcFileTest::test_creating_extended_header PASSED [ 42%]
388s tests/test_mrcfile.py::MrcFileTest::test_data_array_too_big_raises_exception PASSED [ 42%]
388s tests/test_mrcfile.py::MrcFileTest::test_data_is_not_copied_unnecessarily PASSED [ 42%]
388s tests/test_mrcfile.py::MrcFileTest::test_data_is_not_read_if_dimensions_are_too_huge PASSED [ 42%]
388s tests/test_mrcfile.py::MrcFileTest::test_data_transposed_in_place_is_written_without_errors PASSED [ 42%]
388s tests/test_mrcfile.py::MrcFileTest::test_data_values_are_correct PASSED  [ 43%]
388s tests/test_mrcfile.py::MrcFileTest::test_default_data_is_correct PASSED  [ 43%]
388s tests/test_mrcfile.py::MrcFileTest::test_default_extended_header_is_correct PASSED [ 43%]
388s tests/test_mrcfile.py::MrcFileTest::test_default_header_is_correct PASSED [ 43%]
388s tests/test_mrcfile.py::MrcFileTest::test_exception_raised_if_file_is_too_small_for_reading_data PASSED [ 43%]
388s tests/test_mrcfile.py::MrcFileTest::test_exception_raised_if_file_is_too_small_for_reading_extended_header PASSED [ 43%]
388s tests/test_mrcfile.py::MrcFileTest::test_extended_header_is_read_correctly PASSED [ 43%]
388s tests/test_mrcfile.py::MrcFileTest::test_extended_header_with_incorrect_type PASSED [ 43%]
388s tests/test_mrcfile.py::MrcFileTest::test_float16_dtype_is_preserved_in_mode_12 PASSED [ 44%]
388s tests/test_mrcfile.py::MrcFileTest::test_float32_dtype_is_preserved_in_mode_2 PASSED [ 44%]
388s tests/test_mrcfile.py::MrcFileTest::test_float64_dtype_raises_exception PASSED [ 44%]
388s tests/test_mrcfile.py::MrcFileTest::test_get_labels PASSED               [ 44%]
388s tests/test_mrcfile.py::MrcFileTest::test_get_labels_strips_unprintable_characters PASSED [ 44%]
388s tests/test_mrcfile.py::MrcFileTest::test_getting_nstart PASSED           [ 44%]
388s tests/test_mrcfile.py::MrcFileTest::test_getting_voxel_size PASSED       [ 44%]
388s tests/test_mrcfile.py::MrcFileTest::test_header_byte_order_is_changed_by_data_with_opposite_order PASSED [ 44%]
388s tests/test_mrcfile.py::MrcFileTest::test_header_byte_order_is_unchanged_by_data_with_native_order PASSED [ 44%]
388s tests/test_mrcfile.py::MrcFileTest::test_header_byte_order_is_unchanged_by_data_with_no_order PASSED [ 45%]
388s tests/test_mrcfile.py::MrcFileTest::test_header_is_correct_for_2d_data PASSED [ 45%]
388s tests/test_mrcfile.py::MrcFileTest::test_header_is_correct_for_3d_data PASSED [ 45%]
388s tests/test_mrcfile.py::MrcFileTest::test_header_is_correct_for_4d_data PASSED [ 45%]
388s tests/test_mrcfile.py::MrcFileTest::test_header_only_mode_does_not_read_data PASSED [ 45%]
388s tests/test_mrcfile.py::MrcFileTest::test_header_stats_are_undetermined_after_setting_empty_complex_data PASSED [ 45%]
388s tests/test_mrcfile.py::MrcFileTest::test_header_stats_are_undetermined_after_setting_empty_data PASSED [ 45%]
388s tests/test_mrcfile.py::MrcFileTest::test_header_stats_setting_complex_data PASSED [ 45%]
388s tests/test_mrcfile.py::MrcFileTest::test_image_stack_with_new_3d_data_is_still_image_stack PASSED [ 46%]
388s tests/test_mrcfile.py::MrcFileTest::test_indexed_extended_header_from_FEI1_file PASSED [ 46%]
388s tests/test_mrcfile.py::MrcFileTest::test_indexed_extended_header_from_FEI2_file PASSED [ 46%]
388s tests/test_mrcfile.py::MrcFileTest::test_int16_dtype_is_preserved_in_mode_1 PASSED [ 46%]
388s tests/test_mrcfile.py::MrcFileTest::test_int32_dtype_raises_exception PASSED [ 46%]
388s tests/test_mrcfile.py::MrcFileTest::test_int8_dtype_is_preserved_in_mode_0 PASSED [ 46%]
388s tests/test_mrcfile.py::MrcFileTest::test_machine_stamp_is_read_correctly PASSED [ 46%]
388s tests/test_mrcfile.py::MrcFileTest::test_new_header_contains_creator_label PASSED [ 46%]
388s tests/test_mrcfile.py::MrcFileTest::test_new_header_stats_are_undetermined PASSED [ 46%]
388s tests/test_mrcfile.py::MrcFileTest::test_non_c_contiguous_data_is_made_c_contiguous PASSED [ 47%]
388s tests/test_mrcfile.py::MrcFileTest::test_non_mrc_file_gives_correct_warnings_in_permissive_mode PASSED [ 47%]
388s tests/test_mrcfile.py::MrcFileTest::test_non_mrc_file_is_rejected PASSED [ 47%]
388s tests/test_mrcfile.py::MrcFileTest::test_opening_file_with_unknown_mode PASSED [ 47%]
388s tests/test_mrcfile.py::MrcFileTest::test_opening_nonexistent_file PASSED [ 47%]
388s tests/test_mrcfile.py::MrcFileTest::test_opening_with_pathlib PASSED     [ 47%]
388s tests/test_mrcfile.py::MrcFileTest::test_permissive_read_with_wrong_machine_stamp PASSED [ 47%]
388s tests/test_mrcfile.py::MrcFileTest::test_print_header PASSED             [ 47%]
388s tests/test_mrcfile.py::MrcFileTest::test_removing_extended_header PASSED [ 47%]
388s tests/test_mrcfile.py::MrcFileTest::test_replacing_extended_header_different_size PASSED [ 48%]
388s tests/test_mrcfile.py::MrcFileTest::test_replacing_extended_header_same_size PASSED [ 48%]
388s tests/test_mrcfile.py::MrcFileTest::test_replacing_extended_header_too_big PASSED [ 48%]
388s tests/test_mrcfile.py::MrcFileTest::test_repr PASSED                     [ 48%]
388s tests/test_mrcfile.py::MrcFileTest::test_reset_header_stats_are_undetermined PASSED [ 48%]
388s tests/test_mrcfile.py::MrcFileTest::test_setting_data_attribute_raises_exception PASSED [ 48%]
388s tests/test_mrcfile.py::MrcFileTest::test_setting_extended_header PASSED  [ 48%]
388s tests/test_mrcfile.py::MrcFileTest::test_setting_extended_header_attribute_raises_exception PASSED [ 48%]
388s tests/test_mrcfile.py::MrcFileTest::test_setting_header_attribute_raises_exception PASSED [ 49%]
388s tests/test_mrcfile.py::MrcFileTest::test_setting_nstart_as_modified_array PASSED [ 49%]
388s tests/test_mrcfile.py::MrcFileTest::test_setting_nstart_as_single_number PASSED [ 49%]
388s tests/test_mrcfile.py::MrcFileTest::test_setting_nstart_as_tuple PASSED  [ 49%]
388s tests/test_mrcfile.py::MrcFileTest::test_setting_origin_as_separate_fields PASSED [ 49%]
388s tests/test_mrcfile.py::MrcFileTest::test_setting_origin_as_single_field PASSED [ 49%]
388s tests/test_mrcfile.py::MrcFileTest::test_setting_origin_as_single_tuple PASSED [ 49%]
388s tests/test_mrcfile.py::MrcFileTest::test_setting_voxel_size_as_modified_array PASSED [ 49%]
388s tests/test_mrcfile.py::MrcFileTest::test_setting_voxel_size_as_single_number PASSED [ 49%]
388s tests/test_mrcfile.py::MrcFileTest::test_setting_voxel_size_as_tuple PASSED [ 50%]
388s tests/test_mrcfile.py::MrcFileTest::test_stats_are_updated_for_new_data PASSED [ 50%]
388s tests/test_mrcfile.py::MrcFileTest::test_stats_are_updated_on_request PASSED [ 50%]
388s tests/test_mrcfile.py::MrcFileTest::test_stream_can_be_read_again PASSED [ 50%]
388s tests/test_mrcfile.py::MrcFileTest::test_switching_2d_data_to_image_stack_raises_exception PASSED [ 50%]
388s tests/test_mrcfile.py::MrcFileTest::test_switching_2d_data_to_volume_raises_exception PASSED [ 50%]
388s tests/test_mrcfile.py::MrcFileTest::test_switching_4d_data_to_image_stack_raises_exception PASSED [ 50%]
388s tests/test_mrcfile.py::MrcFileTest::test_switching_4d_data_to_volume_raises_exception PASSED [ 50%]
388s tests/test_mrcfile.py::MrcFileTest::test_switching_image_stack_to_volume PASSED [ 50%]
388s tests/test_mrcfile.py::MrcFileTest::test_switching_volume_to_image_stack PASSED [ 51%]
388s tests/test_mrcfile.py::MrcFileTest::test_transposed_data_is_made_contiguous_on_set PASSED [ 51%]
388s tests/test_mrcfile.py::MrcFileTest::test_uint16_dtype_is_preserved_in_mode_6 PASSED [ 51%]
388s tests/test_mrcfile.py::MrcFileTest::test_uint8_dtype_is_widened_in_mode_6 PASSED [ 51%]
388s tests/test_mrcfile.py::MrcFileTest::test_validate PASSED                 [ 51%]
388s tests/test_mrcfile.py::MrcFileTest::test_volume_stack_spacegroup_is_preserved_for_4d_data PASSED [ 51%]
388s tests/test_mrcfile.py::MrcFileTest::test_voxel_size_is_read_correctly PASSED [ 51%]
388s tests/test_mrcfile.py::MrcFileTest::test_warning_for_stats_with_inf PASSED [ 51%]
388s tests/test_mrcfile.py::MrcFileTest::test_warning_for_stats_with_nan PASSED [ 52%]
388s tests/test_mrcfile.py::MrcFileTest::test_warning_issued_if_file_is_too_large PASSED [ 52%]
388s tests/test_mrcfile.py::MrcFileTest::test_writing_image_float16 PASSED    [ 52%]
388s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_0 PASSED     [ 52%]
388s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_1_big_endian PASSED [ 52%]
388s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_1_little_endian PASSED [ 52%]
388s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_1_native_byte_order PASSED [ 52%]
388s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_2_big_endian PASSED [ 52%]
388s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_2_little_endian PASSED [ 52%]
388s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_2_native_byte_order PASSED [ 53%]
388s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_2_with_inf_and_nan PASSED [ 53%]
388s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_4_big_endian PASSED [ 53%]
388s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_4_little_endian PASSED [ 53%]
388s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_4_native_byte_order PASSED [ 53%]
388s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_4_with_inf_and_nan PASSED [ 53%]
388s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_6_big_endian PASSED [ 53%]
388s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_6_little_endian PASSED [ 53%]
388s tests/test_mrcfile.py::MrcFileTest::test_writing_image_mode_6_native_byte_order PASSED [ 53%]
388s tests/test_mrcfile.py::MrcFileTest::test_writing_image_stack_mode_2_native_byte_order PASSED [ 54%]
388s tests/test_mrcfile.py::MrcFileTest::test_writing_image_unsigned_bytes PASSED [ 54%]
388s tests/test_mrcfile.py::MrcFileTest::test_writing_volume_mode_1_native_byte_order PASSED [ 54%]
388s tests/test_mrcfile.py::MrcFileTest::test_writing_volume_stack_mode_1_native_byte_order PASSED [ 54%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_1d_data_raises_exception PASSED [ 54%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_5d_data_raises_exception PASSED [ 54%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_add_label_with_normal_string PASSED [ 54%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_adding_more_than_ten_labels_raises_exception PASSED [ 54%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_adding_non_ascii_label_raises_exception PASSED [ 55%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_adding_non_printable_label_raises_exception PASSED [ 55%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_adding_too_long_label_raises_exception PASSED [ 55%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_attributes_are_empty_after_init PASSED [ 55%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_calling_setters_raises_exception_if_read_only PASSED [ 55%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_can_call_set_image_stack_when_already_an_image_stack PASSED [ 55%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_can_call_set_volume_when_already_a_volume PASSED [ 55%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_check_writeable PASSED [ 55%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_complex128_dtype_raises_exception PASSED [ 55%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_complex256_dtype_raises_exception PASSED [ 56%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_complex64_dtype_is_preserved_in_mode_4 PASSED [ 56%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_data_array_too_big_raises_exception PASSED [ 56%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_data_is_not_copied_unnecessarily PASSED [ 56%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_default_data_is_correct PASSED [ 56%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_default_extended_header_is_correct PASSED [ 56%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_default_header_is_correct PASSED [ 56%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_float16_dtype_is_preserved_in_mode_12 PASSED [ 56%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_float32_dtype_is_preserved_in_mode_2 PASSED [ 57%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_float64_dtype_raises_exception PASSED [ 57%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_get_labels PASSED [ 57%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_get_labels_strips_unprintable_characters PASSED [ 57%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_getting_nstart PASSED [ 57%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_getting_voxel_size PASSED [ 57%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_header_byte_order_is_changed_by_data_with_opposite_order PASSED [ 57%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_header_byte_order_is_unchanged_by_data_with_native_order PASSED [ 57%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_header_byte_order_is_unchanged_by_data_with_no_order PASSED [ 57%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_header_is_correct_for_2d_data PASSED [ 58%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_header_is_correct_for_3d_data PASSED [ 58%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_header_is_correct_for_4d_data PASSED [ 58%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_header_stats_are_undetermined_after_setting_empty_complex_data PASSED [ 58%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_header_stats_are_undetermined_after_setting_empty_data PASSED [ 58%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_header_stats_setting_complex_data PASSED [ 58%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_image_stack_with_new_3d_data_is_still_image_stack PASSED [ 58%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_incorrect_machine_stamp PASSED [ 58%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_incorrect_map_id PASSED [ 58%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_int16_dtype_is_preserved_in_mode_1 PASSED [ 59%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_int32_dtype_raises_exception PASSED [ 59%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_int8_dtype_is_preserved_in_mode_0 PASSED [ 59%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_new_header_contains_creator_label PASSED [ 59%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_new_header_stats_are_undetermined PASSED [ 59%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_non_c_contiguous_data_is_made_c_contiguous PASSED [ 59%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_permissive_read_mode_with_file_too_small_for_data PASSED [ 59%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_permissive_read_mode_with_file_too_small_for_extended_header PASSED [ 59%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_permissive_read_mode_with_wrong_map_id_and_machine_stamp PASSED [ 60%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_print_header PASSED [ 60%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_removing_extended_header PASSED [ 60%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_replacing_extended_header_different_size PASSED [ 60%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_replacing_extended_header_same_size PASSED [ 60%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_replacing_extended_header_too_big PASSED [ 60%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_reset_header_stats_are_undetermined PASSED [ 60%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_data_attribute_raises_exception PASSED [ 60%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_extended_header PASSED [ 60%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_extended_header_attribute_raises_exception PASSED [ 61%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_header_attribute_raises_exception PASSED [ 61%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_nstart_as_modified_array PASSED [ 61%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_nstart_as_single_number PASSED [ 61%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_nstart_as_tuple PASSED [ 61%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_origin_as_separate_fields PASSED [ 61%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_origin_as_single_field PASSED [ 61%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_origin_as_single_tuple PASSED [ 61%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_voxel_size_as_modified_array PASSED [ 61%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_voxel_size_as_single_number PASSED [ 62%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_setting_voxel_size_as_tuple PASSED [ 62%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_short_but_valid_map_id PASSED [ 62%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_stats_are_updated_for_new_data PASSED [ 62%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_stats_are_updated_on_request PASSED [ 62%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_stream_too_short PASSED [ 62%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_stream_writing_and_reading PASSED [ 62%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_switching_2d_data_to_image_stack_raises_exception PASSED [ 62%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_switching_2d_data_to_volume_raises_exception PASSED [ 63%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_switching_4d_data_to_image_stack_raises_exception PASSED [ 63%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_switching_4d_data_to_volume_raises_exception PASSED [ 63%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_switching_image_stack_to_volume PASSED [ 63%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_switching_volume_to_image_stack PASSED [ 63%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_uint16_dtype_is_preserved_in_mode_6 PASSED [ 63%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_uint8_dtype_is_widened_in_mode_6 PASSED [ 63%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_validate PASSED   [ 63%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_volume_stack_spacegroup_is_preserved_for_4d_data PASSED [ 63%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_warning_for_stats_with_inf PASSED [ 64%]
388s tests/test_mrcinterpreter.py::MrcInterpreterTest::test_warning_for_stats_with_nan PASSED [ 64%]
388s tests/test_mrcmemmap.py::MrcMemmapTest::test_1d_data_raises_exception PASSED [ 64%]
388s tests/test_mrcmemmap.py::MrcMemmapTest::test_5d_data_raises_exception PASSED [ 64%]
388s tests/test_mrcmemmap.py::MrcMemmapTest::test_absent_extended_header_is_read_as_zero_length_array PASSED [ 64%]
388s tests/test_mrcmemmap.py::MrcMemmapTest::test_add_label_with_normal_string PASSED [ 64%]
388s tests/test_mrcmemmap.py::MrcMemmapTest::test_adding_more_than_ten_labels_raises_exception PASSED [ 64%]
388s tests/test_mrcmemmap.py::MrcMemmapTest::test_adding_non_ascii_label_raises_exception PASSED [ 64%]
388s tests/test_mrcmemmap.py::MrcMemmapTest::test_adding_non_printable_label_raises_exception PASSED [ 65%]
388s tests/test_mrcmemmap.py::MrcMemmapTest::test_adding_too_long_label_raises_exception PASSED [ 65%]
388s tests/test_mrcmemmap.py::MrcMemmapTest::test_attributes_are_empty_after_init PASSED [ 65%]
388s tests/test_mrcmemmap.py::MrcMemmapTest::test_calling_setters_raises_exception_if_read_only PASSED [ 65%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_can_call_set_image_stack_when_already_an_image_stack PASSED [ 65%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_can_call_set_volume_when_already_a_volume PASSED [ 65%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_can_deliberately_overwrite_file PASSED [ 65%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_can_edit_data_in_read_write_mode PASSED [ 65%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_can_edit_header_in_read_write_mode PASSED [ 65%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_can_read_and_flush_stream_repeatedly PASSED [ 66%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_cannot_accidentally_overwrite_file PASSED [ 66%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_cannot_edit_data_in_read_only_mode PASSED [ 66%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_cannot_edit_extended_header_in_read_only_mode PASSED [ 66%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_cannot_edit_header_in_read_only_mode PASSED [ 66%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_cannot_set_extended_header_in_read_only_mode PASSED [ 66%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_cannot_use_invalid_file_modes PASSED [ 66%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_check_writeable PASSED      [ 66%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_complex128_dtype_raises_exception PASSED [ 66%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_complex256_dtype_raises_exception PASSED [ 67%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_complex64_dtype_is_preserved_in_mode_4 PASSED [ 67%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_creating_extended_header PASSED [ 67%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_data_array_cannot_be_changed_after_closing_file PASSED [ 67%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_data_array_too_big_raises_exception PASSED [ 67%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_data_is_not_copied_unnecessarily PASSED [ 67%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_data_is_not_read_if_dimensions_are_too_huge PASSED [ 67%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_data_transposed_in_place_is_written_without_errors PASSED [ 67%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_data_values_are_correct PASSED [ 68%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_default_data_is_correct PASSED [ 68%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_default_extended_header_is_correct PASSED [ 68%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_default_header_is_correct PASSED [ 68%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_exception_raised_if_file_is_too_small_for_reading_data PASSED [ 68%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_exception_raised_if_file_is_too_small_for_reading_extended_header PASSED [ 68%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_extended_header_is_read_correctly PASSED [ 68%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_extended_header_with_incorrect_type PASSED [ 68%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_float16_dtype_is_preserved_in_mode_12 PASSED [ 68%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_float32_dtype_is_preserved_in_mode_2 PASSED [ 69%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_float64_dtype_raises_exception PASSED [ 69%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_get_labels PASSED           [ 69%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_get_labels_strips_unprintable_characters PASSED [ 69%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_getting_nstart PASSED       [ 69%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_getting_voxel_size PASSED   [ 69%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_header_byte_order_is_changed_by_data_with_opposite_order PASSED [ 69%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_header_byte_order_is_unchanged_by_data_with_native_order PASSED [ 69%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_header_byte_order_is_unchanged_by_data_with_no_order PASSED [ 69%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_header_is_correct_for_2d_data PASSED [ 70%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_header_is_correct_for_3d_data PASSED [ 70%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_header_is_correct_for_4d_data PASSED [ 70%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_header_only_mode_does_not_read_data PASSED [ 70%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_header_stats_are_undetermined_after_setting_empty_complex_data PASSED [ 70%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_header_stats_are_undetermined_after_setting_empty_data PASSED [ 70%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_header_stats_setting_complex_data PASSED [ 70%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_image_stack_with_new_3d_data_is_still_image_stack PASSED [ 70%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_indexed_extended_header_from_FEI1_file PASSED [ 71%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_indexed_extended_header_from_FEI2_file PASSED [ 71%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_int16_dtype_is_preserved_in_mode_1 PASSED [ 71%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_int32_dtype_raises_exception PASSED [ 71%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_int8_dtype_is_preserved_in_mode_0 PASSED [ 71%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_machine_stamp_is_read_correctly PASSED [ 71%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_new_header_contains_creator_label PASSED [ 71%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_new_header_stats_are_undetermined PASSED [ 71%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_non_c_contiguous_data_is_made_c_contiguous PASSED [ 71%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_non_mrc_file_gives_correct_warnings_in_permissive_mode PASSED [ 72%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_non_mrc_file_is_rejected PASSED [ 72%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_opening_file_with_unknown_mode PASSED [ 72%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_opening_nonexistent_file PASSED [ 72%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_opening_with_pathlib PASSED [ 72%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_permissive_read_with_wrong_machine_stamp PASSED [ 72%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_print_header PASSED         [ 72%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_removing_extended_header PASSED [ 72%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_replacing_extended_header_different_size PASSED [ 73%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_replacing_extended_header_same_size PASSED [ 73%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_replacing_extended_header_too_big PASSED [ 73%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_repr PASSED                 [ 73%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_reset_header_stats_are_undetermined PASSED [ 73%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_data_attribute_raises_exception PASSED [ 73%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_extended_header PASSED [ 73%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_extended_header_attribute_raises_exception PASSED [ 73%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_header_attribute_raises_exception PASSED [ 73%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_nstart_as_modified_array PASSED [ 74%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_nstart_as_single_number PASSED [ 74%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_nstart_as_tuple PASSED [ 74%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_origin_as_separate_fields PASSED [ 74%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_origin_as_single_field PASSED [ 74%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_origin_as_single_tuple PASSED [ 74%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_voxel_size_as_modified_array PASSED [ 74%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_voxel_size_as_single_number PASSED [ 74%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_setting_voxel_size_as_tuple PASSED [ 74%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_stats_are_updated_for_new_data PASSED [ 75%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_stats_are_updated_on_request PASSED [ 75%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_stream_can_be_read_again PASSED [ 75%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_switching_2d_data_to_image_stack_raises_exception PASSED [ 75%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_switching_2d_data_to_volume_raises_exception PASSED [ 75%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_switching_4d_data_to_image_stack_raises_exception PASSED [ 75%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_switching_4d_data_to_volume_raises_exception PASSED [ 75%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_switching_image_stack_to_volume PASSED [ 75%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_switching_volume_to_image_stack PASSED [ 76%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_transposed_data_is_made_contiguous_on_set PASSED [ 76%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_uint16_dtype_is_preserved_in_mode_6 PASSED [ 76%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_uint8_dtype_is_widened_in_mode_6 PASSED [ 76%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_validate PASSED             [ 76%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_volume_stack_spacegroup_is_preserved_for_4d_data PASSED [ 76%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_voxel_size_is_read_correctly PASSED [ 76%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_warning_for_stats_with_inf PASSED [ 76%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_warning_for_stats_with_nan PASSED [ 76%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_warning_issued_if_file_is_too_large PASSED [ 77%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_float16 PASSED [ 77%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_0 PASSED [ 77%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_1_big_endian PASSED [ 77%]
389s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_1_little_endian PASSED [ 77%]
390s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_1_native_byte_order PASSED [ 77%]
390s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_2_big_endian PASSED [ 77%]
390s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_2_little_endian PASSED [ 77%]
390s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_2_native_byte_order PASSED [ 77%]
390s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_2_with_inf_and_nan PASSED [ 78%]
390s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_4_big_endian PASSED [ 78%]
390s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_4_little_endian PASSED [ 78%]
390s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_4_native_byte_order PASSED [ 78%]
390s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_4_with_inf_and_nan PASSED [ 78%]
390s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_6_big_endian PASSED [ 78%]
390s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_6_little_endian PASSED [ 78%]
390s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_mode_6_native_byte_order PASSED [ 78%]
390s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_stack_mode_2_native_byte_order PASSED [ 79%]
390s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_image_unsigned_bytes PASSED [ 79%]
390s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_volume_mode_1_native_byte_order PASSED [ 79%]
390s tests/test_mrcmemmap.py::MrcMemmapTest::test_writing_volume_stack_mode_1_native_byte_order PASSED [ 79%]
390s tests/test_mrcobject.py::MrcObjectTest::test_1d_data_raises_exception PASSED [ 79%]
390s tests/test_mrcobject.py::MrcObjectTest::test_5d_data_raises_exception PASSED [ 79%]
390s tests/test_mrcobject.py::MrcObjectTest::test_add_label_with_normal_string PASSED [ 79%]
390s tests/test_mrcobject.py::MrcObjectTest::test_adding_more_than_ten_labels_raises_exception PASSED [ 79%]
390s tests/test_mrcobject.py::MrcObjectTest::test_adding_non_ascii_label_raises_exception PASSED [ 79%]
390s tests/test_mrcobject.py::MrcObjectTest::test_adding_non_printable_label_raises_exception PASSED [ 80%]
390s tests/test_mrcobject.py::MrcObjectTest::test_adding_too_long_label_raises_exception PASSED [ 80%]
390s tests/test_mrcobject.py::MrcObjectTest::test_attributes_are_empty_after_init PASSED [ 80%]
390s tests/test_mrcobject.py::MrcObjectTest::test_calling_setters_raises_exception_if_read_only PASSED [ 80%]
390s tests/test_mrcobject.py::MrcObjectTest::test_can_call_set_image_stack_when_already_an_image_stack PASSED [ 80%]
390s tests/test_mrcobject.py::MrcObjectTest::test_can_call_set_volume_when_already_a_volume PASSED [ 80%]
390s tests/test_mrcobject.py::MrcObjectTest::test_check_writeable PASSED      [ 80%]
390s tests/test_mrcobject.py::MrcObjectTest::test_complex128_dtype_raises_exception PASSED [ 80%]
390s tests/test_mrcobject.py::MrcObjectTest::test_complex256_dtype_raises_exception PASSED [ 80%]
390s tests/test_mrcobject.py::MrcObjectTest::test_complex64_dtype_is_preserved_in_mode_4 PASSED [ 81%]
390s tests/test_mrcobject.py::MrcObjectTest::test_data_array_too_big_raises_exception PASSED [ 81%]
390s tests/test_mrcobject.py::MrcObjectTest::test_data_is_not_copied_unnecessarily PASSED [ 81%]
390s tests/test_mrcobject.py::MrcObjectTest::test_default_data_is_correct PASSED [ 81%]
390s tests/test_mrcobject.py::MrcObjectTest::test_default_extended_header_is_correct PASSED [ 81%]
390s tests/test_mrcobject.py::MrcObjectTest::test_default_header_is_correct PASSED [ 81%]
390s tests/test_mrcobject.py::MrcObjectTest::test_float16_dtype_is_preserved_in_mode_12 PASSED [ 81%]
390s tests/test_mrcobject.py::MrcObjectTest::test_float32_dtype_is_preserved_in_mode_2 PASSED [ 81%]
390s tests/test_mrcobject.py::MrcObjectTest::test_float64_dtype_raises_exception PASSED [ 82%]
390s tests/test_mrcobject.py::MrcObjectTest::test_get_labels PASSED           [ 82%]
390s tests/test_mrcobject.py::MrcObjectTest::test_get_labels_strips_unprintable_characters PASSED [ 82%]
390s tests/test_mrcobject.py::MrcObjectTest::test_getting_nstart PASSED       [ 82%]
390s tests/test_mrcobject.py::MrcObjectTest::test_getting_voxel_size PASSED   [ 82%]
390s tests/test_mrcobject.py::MrcObjectTest::test_header_byte_order_is_changed_by_data_with_opposite_order PASSED [ 82%]
390s tests/test_mrcobject.py::MrcObjectTest::test_header_byte_order_is_unchanged_by_data_with_native_order PASSED [ 82%]
390s tests/test_mrcobject.py::MrcObjectTest::test_header_byte_order_is_unchanged_by_data_with_no_order PASSED [ 82%]
390s tests/test_mrcobject.py::MrcObjectTest::test_header_is_correct_for_2d_data PASSED [ 82%]
390s tests/test_mrcobject.py::MrcObjectTest::test_header_is_correct_for_3d_data PASSED [ 83%]
390s tests/test_mrcobject.py::MrcObjectTest::test_header_is_correct_for_4d_data PASSED [ 83%]
390s tests/test_mrcobject.py::MrcObjectTest::test_header_stats_are_undetermined_after_setting_empty_complex_data PASSED [ 83%]
390s tests/test_mrcobject.py::MrcObjectTest::test_header_stats_are_undetermined_after_setting_empty_data PASSED [ 83%]
390s tests/test_mrcobject.py::MrcObjectTest::test_header_stats_setting_complex_data PASSED [ 83%]
390s tests/test_mrcobject.py::MrcObjectTest::test_image_stack_with_new_3d_data_is_still_image_stack PASSED [ 83%]
390s tests/test_mrcobject.py::MrcObjectTest::test_int16_dtype_is_preserved_in_mode_1 PASSED [ 83%]
390s tests/test_mrcobject.py::MrcObjectTest::test_int32_dtype_raises_exception PASSED [ 83%]
390s tests/test_mrcobject.py::MrcObjectTest::test_int8_dtype_is_preserved_in_mode_0 PASSED [ 84%]
390s tests/test_mrcobject.py::MrcObjectTest::test_new_header_contains_creator_label PASSED [ 84%]
390s tests/test_mrcobject.py::MrcObjectTest::test_new_header_stats_are_undetermined PASSED [ 84%]
390s tests/test_mrcobject.py::MrcObjectTest::test_non_c_contiguous_data_is_made_c_contiguous PASSED [ 84%]
390s tests/test_mrcobject.py::MrcObjectTest::test_print_header PASSED         [ 84%]
390s tests/test_mrcobject.py::MrcObjectTest::test_removing_extended_header PASSED [ 84%]
390s tests/test_mrcobject.py::MrcObjectTest::test_replacing_extended_header_different_size PASSED [ 84%]
390s tests/test_mrcobject.py::MrcObjectTest::test_replacing_extended_header_same_size PASSED [ 84%]
390s tests/test_mrcobject.py::MrcObjectTest::test_replacing_extended_header_too_big PASSED [ 84%]
390s tests/test_mrcobject.py::MrcObjectTest::test_reset_header_stats_are_undetermined PASSED [ 85%]
390s tests/test_mrcobject.py::MrcObjectTest::test_setting_data_attribute_raises_exception PASSED [ 85%]
390s tests/test_mrcobject.py::MrcObjectTest::test_setting_extended_header PASSED [ 85%]
390s tests/test_mrcobject.py::MrcObjectTest::test_setting_extended_header_attribute_raises_exception PASSED [ 85%]
390s tests/test_mrcobject.py::MrcObjectTest::test_setting_header_attribute_raises_exception PASSED [ 85%]
390s tests/test_mrcobject.py::MrcObjectTest::test_setting_nstart_as_modified_array PASSED [ 85%]
390s tests/test_mrcobject.py::MrcObjectTest::test_setting_nstart_as_single_number PASSED [ 85%]
390s tests/test_mrcobject.py::MrcObjectTest::test_setting_nstart_as_tuple PASSED [ 85%]
390s tests/test_mrcobject.py::MrcObjectTest::test_setting_origin_as_separate_fields PASSED [ 85%]
390s tests/test_mrcobject.py::MrcObjectTest::test_setting_origin_as_single_field PASSED [ 86%]
390s tests/test_mrcobject.py::MrcObjectTest::test_setting_origin_as_single_tuple PASSED [ 86%]
390s tests/test_mrcobject.py::MrcObjectTest::test_setting_voxel_size_as_modified_array PASSED [ 86%]
390s tests/test_mrcobject.py::MrcObjectTest::test_setting_voxel_size_as_single_number PASSED [ 86%]
390s tests/test_mrcobject.py::MrcObjectTest::test_setting_voxel_size_as_tuple PASSED [ 86%]
390s tests/test_mrcobject.py::MrcObjectTest::test_stats_are_updated_for_new_data PASSED [ 86%]
390s tests/test_mrcobject.py::MrcObjectTest::test_stats_are_updated_on_request PASSED [ 86%]
390s tests/test_mrcobject.py::MrcObjectTest::test_switching_2d_data_to_image_stack_raises_exception PASSED [ 86%]
390s tests/test_mrcobject.py::MrcObjectTest::test_switching_2d_data_to_volume_raises_exception PASSED [ 87%]
390s tests/test_mrcobject.py::MrcObjectTest::test_switching_4d_data_to_image_stack_raises_exception PASSED [ 87%]
390s tests/test_mrcobject.py::MrcObjectTest::test_switching_4d_data_to_volume_raises_exception PASSED [ 87%]
390s tests/test_mrcobject.py::MrcObjectTest::test_switching_image_stack_to_volume PASSED [ 87%]
390s tests/test_mrcobject.py::MrcObjectTest::test_switching_volume_to_image_stack PASSED [ 87%]
390s tests/test_mrcobject.py::MrcObjectTest::test_uint16_dtype_is_preserved_in_mode_6 PASSED [ 87%]
390s tests/test_mrcobject.py::MrcObjectTest::test_uint8_dtype_is_widened_in_mode_6 PASSED [ 87%]
390s tests/test_mrcobject.py::MrcObjectTest::test_validate PASSED             [ 87%]
390s tests/test_mrcobject.py::MrcObjectTest::test_volume_stack_spacegroup_is_preserved_for_4d_data PASSED [ 87%]
390s tests/test_mrcobject.py::MrcObjectTest::test_warning_for_stats_with_inf PASSED [ 88%]
390s tests/test_mrcobject.py::MrcObjectTest::test_warning_for_stats_with_nan PASSED [ 88%]
390s tests/test_utils.py::UtilsTest::test_big_byte_order_equals_native PASSED [ 88%]
390s tests/test_utils.py::UtilsTest::test_big_byte_orders_equal PASSED        [ 88%]
390s tests/test_utils.py::UtilsTest::test_big_endian_machine_stamp PASSED     [ 88%]
390s tests/test_utils.py::UtilsTest::test_bool_dtype_raises_exception PASSED  [ 88%]
390s tests/test_utils.py::UtilsTest::test_bytes_from_string_with_ascii_string PASSED [ 88%]
390s tests/test_utils.py::UtilsTest::test_bytes_from_string_with_non_ascii_string_raises_exception PASSED [ 88%]
390s tests/test_utils.py::UtilsTest::test_bytes_from_string_with_unicode_non_ascii_string_raises_exception PASSED [ 88%]
390s tests/test_utils.py::UtilsTest::test_bytes_from_string_with_unicode_string PASSED [ 89%]
390s tests/test_utils.py::UtilsTest::test_complex128_dtype_raises_exception PASSED [ 89%]
390s tests/test_utils.py::UtilsTest::test_complex64_dtype_is_converted_to_mode_4 PASSED [ 89%]
390s tests/test_utils.py::UtilsTest::test_empty_mode_array_raises_error PASSED [ 89%]
390s tests/test_utils.py::UtilsTest::test_equality_of_invalid_byte_orders PASSED [ 89%]
390s tests/test_utils.py::UtilsTest::test_float128_dtype_raises_exception PASSED [ 89%]
390s tests/test_utils.py::UtilsTest::test_float16_dtype_is_converted_to_mode_12 PASSED [ 89%]
390s tests/test_utils.py::UtilsTest::test_float32_dtype_is_converted_to_mode_2 PASSED [ 89%]
390s tests/test_utils.py::UtilsTest::test_float64_dtype_raises_exception PASSED [ 90%]
390s tests/test_utils.py::UtilsTest::test_header_dtype_is_correct_length PASSED [ 90%]
390s tests/test_utils.py::UtilsTest::test_int16_dtype_is_converted_to_mode_1 PASSED [ 90%]
390s tests/test_utils.py::UtilsTest::test_int32_dtype_raises_exception PASSED [ 90%]
390s tests/test_utils.py::UtilsTest::test_int64_dtype_raises_exception PASSED [ 90%]
390s tests/test_utils.py::UtilsTest::test_int8_dtype_is_converted_to_mode_0 PASSED [ 90%]
390s tests/test_utils.py::UtilsTest::test_is_printable_ascii_rejects_newline PASSED [ 90%]
390s tests/test_utils.py::UtilsTest::test_is_printable_ascii_rejects_non_ascii_printable_character PASSED [ 90%]
390s tests/test_utils.py::UtilsTest::test_is_printable_ascii_rejects_null_byte PASSED [ 90%]
390s tests/test_utils.py::UtilsTest::test_is_printable_ascii_rejects_other_unprintable_bytes PASSED [ 91%]
390s tests/test_utils.py::UtilsTest::test_is_printable_ascii_rejects_tab PASSED [ 91%]
390s tests/test_utils.py::UtilsTest::test_is_printable_ascii_with_printable_string PASSED [ 91%]
390s tests/test_utils.py::UtilsTest::test_little_byte_order_equals_native PASSED [ 91%]
390s tests/test_utils.py::UtilsTest::test_little_byte_orders_equal PASSED     [ 91%]
390s tests/test_utils.py::UtilsTest::test_little_endian_machine_stamp PASSED  [ 91%]
390s tests/test_utils.py::UtilsTest::test_mode_0_is_converted_to_int8 PASSED  [ 91%]
390s tests/test_utils.py::UtilsTest::test_mode_1_is_converted_to_int16 PASSED [ 91%]
390s tests/test_utils.py::UtilsTest::test_mode_2_is_converted_to_float32 PASSED [ 92%]
390s tests/test_utils.py::UtilsTest::test_mode_3_raises_exception PASSED      [ 92%]
390s tests/test_utils.py::UtilsTest::test_mode_4_is_converted_to_complex64 PASSED [ 92%]
390s tests/test_utils.py::UtilsTest::test_mode_6_is_converted_to_uint16 PASSED [ 92%]
390s tests/test_utils.py::UtilsTest::test_mode_array_with_two_items_raises_error PASSED [ 92%]
390s tests/test_utils.py::UtilsTest::test_mode_onedim_array_is_converted_without_error PASSED [ 92%]
390s tests/test_utils.py::UtilsTest::test_mode_scalar_is_converted_without_error PASSED [ 92%]
390s tests/test_utils.py::UtilsTest::test_mode_zerodim_array_is_converted_without_error PASSED [ 92%]
390s tests/test_utils.py::UtilsTest::test_native_byte_orders_equal PASSED     [ 92%]
390s tests/test_utils.py::UtilsTest::test_native_machine_stamp PASSED         [ 93%]
390s tests/test_utils.py::UtilsTest::test_normalise_big_endian_byte_order PASSED [ 93%]
390s tests/test_utils.py::UtilsTest::test_normalise_little_endian_byte_order PASSED [ 93%]
390s tests/test_utils.py::UtilsTest::test_normalise_native_byte_order PASSED  [ 93%]
390s tests/test_utils.py::UtilsTest::test_normalise_unknown_byte_orders PASSED [ 93%]
390s tests/test_utils.py::UtilsTest::test_object_dtype_raises_exception PASSED [ 93%]
390s tests/test_utils.py::UtilsTest::test_pretty_machine_stamp PASSED         [ 93%]
390s tests/test_utils.py::UtilsTest::test_printable_string_from_bytes_leaves_ascii_unchanged PASSED [ 93%]
390s tests/test_utils.py::UtilsTest::test_printable_string_from_bytes_strips_non_ascii_characters PASSED [ 93%]
390s tests/test_utils.py::UtilsTest::test_printable_string_from_bytes_strips_unprintable_characters PASSED [ 94%]
390s tests/test_utils.py::UtilsTest::test_spacegroup_is_volume_stack PASSED   [ 94%]
390s tests/test_utils.py::UtilsTest::test_string_dtype_raises_exception PASSED [ 94%]
390s tests/test_utils.py::UtilsTest::test_structured_dtype_raises_exception PASSED [ 94%]
390s tests/test_utils.py::UtilsTest::test_uint16_dtype_is_converted_to_mode_6 PASSED [ 94%]
390s tests/test_utils.py::UtilsTest::test_uint32_dtype_raises_exception PASSED [ 94%]
390s tests/test_utils.py::UtilsTest::test_uint64_dtype_raises_exception PASSED [ 94%]
390s tests/test_utils.py::UtilsTest::test_uint8_dtype_is_converted_to_mode_6 PASSED [ 94%]
390s tests/test_utils.py::UtilsTest::test_undefined_modes_raise_exception PASSED [ 95%]
390s tests/test_utils.py::UtilsTest::test_unequal_byte_orders PASSED          [ 95%]
390s tests/test_utils.py::UtilsTest::test_unicode_dtype_raises_exception PASSED [ 95%]
390s tests/test_utils.py::UtilsTest::test_unknown_byte_order_raises_exception PASSED [ 95%]
390s tests/test_validation.py::ValidationTest::test_bzip2_emdb_file PASSED    [ 95%]
390s tests/test_validation.py::ValidationTest::test_emdb_cryst_file PASSED    [ 95%]
390s tests/test_validation.py::ValidationTest::test_emdb_file PASSED          [ 95%]
390s tests/test_validation.py::ValidationTest::test_empty_labels_in_list PASSED [ 95%]
390s tests/test_validation.py::ValidationTest::test_file_too_large PASSED     [ 95%]
390s tests/test_validation.py::ValidationTest::test_file_too_small PASSED     [ 96%]
390s tests/test_validation.py::ValidationTest::test_good_file PASSED          [ 96%]
390s tests/test_validation.py::ValidationTest::test_gzip_emdb_file PASSED     [ 96%]
390s tests/test_validation.py::ValidationTest::test_incorrect_dmax PASSED     [ 96%]
390s tests/test_validation.py::ValidationTest::test_incorrect_dmean PASSED    [ 96%]
390s tests/test_validation.py::ValidationTest::test_incorrect_dmean_with_undetermined_dmin_and_dmax PASSED [ 96%]
390s tests/test_validation.py::ValidationTest::test_incorrect_dmin PASSED     [ 96%]
390s tests/test_validation.py::ValidationTest::test_incorrect_format_version PASSED [ 96%]
390s tests/test_validation.py::ValidationTest::test_incorrect_machine_stamp PASSED [ 96%]
390s tests/test_validation.py::ValidationTest::test_incorrect_map_id PASSED   [ 97%]
390s tests/test_validation.py::ValidationTest::test_incorrect_rms PASSED      [ 97%]
390s tests/test_validation.py::ValidationTest::test_invalid_axis_mapping PASSED [ 97%]
390s tests/test_validation.py::ValidationTest::test_invalid_mode PASSED       [ 97%]
390s tests/test_validation.py::ValidationTest::test_many_problems_simultaneously PASSED [ 97%]
390s tests/test_validation.py::ValidationTest::test_mean_undetermined PASSED  [ 97%]
390s tests/test_validation.py::ValidationTest::test_min_and_max_undetermined PASSED [ 97%]
390s tests/test_validation.py::ValidationTest::test_min_max_and_mean_undetermined PASSED [ 97%]
390s tests/test_validation.py::ValidationTest::test_missing_exttyp PASSED     [ 98%]
390s tests/test_validation.py::ValidationTest::test_mz_correct_for_volume_stack PASSED [ 98%]
390s tests/test_validation.py::ValidationTest::test_mz_incorrect_for_volume_stack PASSED [ 98%]
390s tests/test_validation.py::ValidationTest::test_negative_cella_x PASSED   [ 98%]
390s tests/test_validation.py::ValidationTest::test_negative_ispg PASSED      [ 98%]
390s tests/test_validation.py::ValidationTest::test_negative_mx PASSED        [ 98%]
390s tests/test_validation.py::ValidationTest::test_negative_my PASSED        [ 98%]
390s tests/test_validation.py::ValidationTest::test_negative_mz PASSED        [ 98%]
390s tests/test_validation.py::ValidationTest::test_negative_nlabl PASSED     [ 98%]
390s tests/test_validation.py::ValidationTest::test_nlabl_too_large PASSED    [ 99%]
390s tests/test_validation.py::ValidationTest::test_nlabl_too_small PASSED    [ 99%]
390s tests/test_validation.py::ValidationTest::test_old_format_version PASSED [ 99%]
390s tests/test_validation.py::ValidationTest::test_rms_undetermined PASSED   [ 99%]
390s tests/test_validation.py::ValidationTest::test_short_map_id PASSED       [ 99%]
390s tests/test_validation.py::ValidationTest::test_unknown_exttyp PASSED     [ 99%]
390s tests/test_validation.py::ValidationTest::test_validate_bad_files PASSED [ 99%]
390s tests/test_validation.py::ValidationTest::test_validate_good_and_bad_files PASSED [ 99%]
390s tests/test_validation.py::ValidationTest::test_validate_good_files PASSED [100%]
390s 
390s ============================= 863 passed in 10.62s =============================
390s autopkgtest [22:12:41]: test python: -----------------------]
391s python               PASS
391s autopkgtest [22:12:42]: test python:  - - - - - - - - - - results - - - - - - - - - -
391s autopkgtest [22:12:42]: @@@@@@@@@@@@@@@@@@@@ summary
391s command1             PASS
391s python               PASS
689s nova [W] Skipping flock for amd64
689s Creating nova instance adt-plucky-i386-python-mrcfile-20250116-213108-juju-7f2275-prod-proposed-migration-environment-15-ef6992dd-30f9-4217-b078-db9547b52208 from image adt/ubuntu-plucky-amd64-server-20250116.img (UUID f8f20857-0bb3-41f3-9fef-38a35f061cae)...
689s nova [W] Timed out waiting for 8a09421f-cad8-4428-b844-eca593c52257 to get deleted.
689s nova [W] Skipping flock for amd64
689s Creating nova instance adt-plucky-i386-python-mrcfile-20250116-213108-juju-7f2275-prod-proposed-migration-environment-15-ef6992dd-30f9-4217-b078-db9547b52208 from image adt/ubuntu-plucky-amd64-server-20250116.img (UUID f8f20857-0bb3-41f3-9fef-38a35f061cae)...