0s autopkgtest [02:52:08]: starting date and time: 2024-11-15 02:52:08+0000 0s autopkgtest [02:52:08]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [02:52:08]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.vms13433/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-griddataformats --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-14.secgroup --name adt-plucky-i386-python-griddataformats-20241115-025208-juju-7f2275-prod-proposed-migration-environment-20-356a279c-a729-4a80-9b1f-baa6c964b1c1 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 46s autopkgtest [02:52:54]: testbed dpkg architecture: amd64 46s autopkgtest [02:52:54]: testbed apt version: 2.9.8 47s autopkgtest [02:52:55]: test architecture: i386 47s autopkgtest [02:52:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 48s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 48s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 48s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 48s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1030 kB] 48s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 48s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [101 kB] 48s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [166 kB] 48s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 48s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [293 kB] 48s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [800 kB] 48s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9128 B] 48s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 48s Fetched 2630 kB in 1s (3148 kB/s) 49s Reading package lists... 51s Reading package lists... 51s Building dependency tree... 51s Reading state information... 52s Calculating upgrade... 52s The following NEW packages will be installed: 52s python3.13-gdbm 52s The following packages will be upgraded: 52s firmware-sof-signed libcap-ng0 libexpat1 libpython3-stdlib lxd-installer 52s man-db pastebinit python3 python3-gdbm python3-minimal python3-systemd 52s xfsprogs 52s 12 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 52s Need to get 9638 kB of archives. 52s After this operation, 542 kB of additional disk space will be used. 52s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 52s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 52s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 52s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 firmware-sof-signed all 2024.06-1ubuntu2 [7083 kB] 53s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-3build1 [15.6 kB] 53s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libexpat1 amd64 2.6.4-1 [94.9 kB] 53s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 man-db amd64 2.13.0-1 [1352 kB] 53s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 53s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 53s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 lxd-installer all 9 [5084 B] 53s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 53s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build5 [45.7 kB] 53s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 xfsprogs amd64 6.8.0-2.2ubuntu2 [926 kB] 54s Preconfiguring packages ... 54s Fetched 9638 kB in 2s (5799 kB/s) 54s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 54s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 54s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 54s Setting up python3-minimal (3.12.7-1) ... 54s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 54s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 54s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 54s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 54s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 54s Preparing to unpack .../firmware-sof-signed_2024.06-1ubuntu2_all.deb ... 54s Unpacking firmware-sof-signed (2024.06-1ubuntu2) over (2024.06-1ubuntu1) ... 54s Preparing to unpack .../libcap-ng0_0.8.5-3build1_amd64.deb ... 54s Unpacking libcap-ng0:amd64 (0.8.5-3build1) over (0.8.5-1) ... 54s Setting up libcap-ng0:amd64 (0.8.5-3build1) ... 54s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75568 files and directories currently installed.) 54s Preparing to unpack .../0-libexpat1_2.6.4-1_amd64.deb ... 54s Unpacking libexpat1:amd64 (2.6.4-1) over (2.6.2-2) ... 55s Preparing to unpack .../1-man-db_2.13.0-1_amd64.deb ... 55s Unpacking man-db (2.13.0-1) over (2.12.1-3) ... 55s Selecting previously unselected package python3.13-gdbm. 55s Preparing to unpack .../2-python3.13-gdbm_3.13.0-2_amd64.deb ... 55s Unpacking python3.13-gdbm (3.13.0-2) ... 55s Preparing to unpack .../3-python3-gdbm_3.12.7-1_amd64.deb ... 55s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 55s Preparing to unpack .../4-lxd-installer_9_all.deb ... 55s Unpacking lxd-installer (9) over (8) ... 55s Preparing to unpack .../5-pastebinit_1.7.1-1_all.deb ... 55s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 55s Preparing to unpack .../6-python3-systemd_235-1build5_amd64.deb ... 55s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 55s Preparing to unpack .../7-xfsprogs_6.8.0-2.2ubuntu2_amd64.deb ... 55s Unpacking xfsprogs (6.8.0-2.2ubuntu2) over (6.8.0-2.2ubuntu1) ... 55s Setting up libexpat1:amd64 (2.6.4-1) ... 55s Setting up firmware-sof-signed (2024.06-1ubuntu2) ... 55s Setting up man-db (2.13.0-1) ... 55s Updating database of manual pages ... 57s man-db.service is a disabled or a static unit not running, not starting it. 57s Setting up lxd-installer (9) ... 57s Setting up python3.13-gdbm (3.13.0-2) ... 57s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 57s Setting up python3 (3.12.7-1) ... 58s Setting up xfsprogs (6.8.0-2.2ubuntu2) ... 58s update-initramfs: deferring update (trigger activated) 58s Setting up python3-systemd (235-1build5) ... 58s Setting up python3-gdbm:amd64 (3.12.7-1) ... 58s Setting up pastebinit (1.7.1-1) ... 58s Processing triggers for libc-bin (2.40-1ubuntu3) ... 58s Processing triggers for initramfs-tools (0.142ubuntu34) ... 58s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 58s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 67s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 67s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 67s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 67s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 68s Reading package lists... 68s Reading package lists... 68s Building dependency tree... 68s Reading state information... 68s Calculating upgrade... 68s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 68s Reading package lists... 68s Building dependency tree... 68s Reading state information... 68s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 69s autopkgtest [02:53:17]: rebooting testbed after setup commands that affected boot 86s autopkgtest [02:53:34]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 88s autopkgtest [02:53:36]: @@@@@@@@@@@@@@@@@@@@ apt-source python-griddataformats 91s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-griddataformats 1.0.2-2 (dsc) [2289 B] 91s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-griddataformats 1.0.2-2 (tar) [2159 kB] 91s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-griddataformats 1.0.2-2 (diff) [3276 B] 91s gpgv: Signature made Mon Jul 22 19:07:58 2024 UTC 91s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 91s gpgv: issuer "tchet@debian.org" 91s gpgv: Can't check signature: No public key 91s dpkg-source: warning: cannot verify inline signature for ./python-griddataformats_1.0.2-2.dsc: no acceptable signature found 91s autopkgtest [02:53:39]: testing package python-griddataformats version 1.0.2-2 91s autopkgtest [02:53:39]: build not needed 92s autopkgtest [02:53:40]: test command1: preparing testbed 94s Note, using file '/tmp/autopkgtest.lDlKX0/1-autopkgtest-satdep.dsc' to get the build dependencies 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s Starting pkgProblemResolver with broken count: 0 94s Starting 2 pkgProblemResolver with broken count: 0 94s Done 95s The following NEW packages will be installed: 95s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 95s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu debhelper debugedit 95s dh-autoreconf dh-python dh-strip-nondeterminism dwz fonts-font-awesome 95s fonts-lato g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc 95s gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian 95s libarchive-zip-perl libasan8 libblas3 libcc1-0 libdebhelper-perl 95s libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgomp1 95s libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore 95s liblapack3 liblbfgsb0 liblsan0 libmpc3 libpython3.13-minimal 95s libpython3.13-stdlib libquadmath0 libstdc++-14-dev libtool libtsan2 95s libubsan1 m4 po-debconf python3-all python3-decorator 95s python3-griddataformats python3-iniconfig python3-mrcfile python3-numpy 95s python3-packaging python3-pluggy python3-pytest python3-scipy python3.13 95s python3.13-minimal sphinx-rtd-theme-common 95s 0 upgraded, 68 newly installed, 0 to remove and 0 not upgraded. 95s Need to get 110 MB of archives. 95s After this operation, 388 MB of additional disk space will be used. 95s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-lato all 2.015-1 [2781 kB] 96s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 96s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 96s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB] 96s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB] 96s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 96s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 96s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-2 [616 kB] 96s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 96s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 96s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 96s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 96s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 96s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 96s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 96s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 96s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 96s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 96s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 96s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 96s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 96s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 96s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 96s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 96s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 97s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 97s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 97s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 97s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 97s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 98s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 98s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 98s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 98s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 98s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 98s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.4.7-7build1 [166 kB] 98s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 98s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 98s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 98s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 98s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB] 98s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 98s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-2 [948 kB] 98s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 98s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 98s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB] 98s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20241024 [112 kB] 98s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 98s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 98s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 98s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 98s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 98s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 98s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 98s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 98s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 98s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 98s Get:58 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 98s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 98s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 99s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-rtd-theme-common all 3.0.1+dfsg-1 [1012 kB] 99s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mrcfile all 1.5.3-3 [114 kB] 99s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 100s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-griddataformats all 1.0.2-2 [2107 kB] 100s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 100s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 100s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 100s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 100s Fetched 110 MB in 5s (22.6 MB/s) 100s Selecting previously unselected package fonts-lato. 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75581 files and directories currently installed.) 100s Preparing to unpack .../00-fonts-lato_2.015-1_all.deb ... 100s Unpacking fonts-lato (2.015-1) ... 100s Selecting previously unselected package libpython3.13-minimal:amd64. 100s Preparing to unpack .../01-libpython3.13-minimal_3.13.0-2_amd64.deb ... 100s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 100s Selecting previously unselected package python3.13-minimal. 101s Preparing to unpack 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auto mode 115s Setting up build-essential (12.10ubuntu1) ... 115s Setting up debhelper (13.20ubuntu1) ... 115s Processing triggers for man-db (2.13.0-1) ... 116s Processing triggers for install-info (7.1.1-1) ... 116s Processing triggers for libc-bin (2.40-1ubuntu3) ... 116s Processing triggers for systemd (256.5-2ubuntu4) ... 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Starting pkgProblemResolver with broken count: 0 119s Starting 2 pkgProblemResolver with broken count: 0 119s Done 120s The following NEW packages will be installed: 120s autopkgtest-satdep 120s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 120s Need to get 0 B/700 B of archives. 120s After this operation, 0 B of additional disk space will be used. 120s Get:1 /tmp/autopkgtest.lDlKX0/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 120s Selecting previously unselected package autopkgtest-satdep. 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81504 files and directories currently installed.) 120s Preparing to unpack .../2-autopkgtest-satdep.deb ... 120s Unpacking autopkgtest-satdep (0) ... 120s Setting up autopkgtest-satdep (0) ... 122s (Reading database ... 81504 files and directories currently installed.) 122s Removing autopkgtest-satdep (0) ... 122s autopkgtest [02:54:10]: test command1: for py3 in `py3versions -s`; do $py3 -m pytest -v; done 122s autopkgtest [02:54:10]: test command1: [----------------------- 123s ============================= test session starts ============================== 123s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 123s cachedir: .pytest_cache 123s rootdir: /tmp/autopkgtest.lDlKX0/build.2AS/src 123s plugins: typeguard-4.4.1 123s collecting ... collected 0 items / 4 errors 123s 123s ==================================== ERRORS ==================================== 123s __________________ ERROR collecting gridData/tests/test_dx.py __________________ 123s ImportError while importing test module '/tmp/autopkgtest.lDlKX0/build.2AS/src/gridData/tests/test_dx.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s gridData/__init__.py:109: in 123s from .core import Grid 123s gridData/core.py:30: in 123s import numpy 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s _______________ ERROR collecting gridData/tests/test_gOpenMol.py _______________ 123s ImportError while importing test module '/tmp/autopkgtest.lDlKX0/build.2AS/src/gridData/tests/test_gOpenMol.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s gridData/__init__.py:109: in 123s from .core import Grid 123s gridData/core.py:30: in 123s import numpy 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s _________________ ERROR collecting gridData/tests/test_grid.py _________________ 123s ImportError while importing test module '/tmp/autopkgtest.lDlKX0/build.2AS/src/gridData/tests/test_grid.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s gridData/__init__.py:109: in 123s from .core import Grid 123s gridData/core.py:30: in 123s import numpy 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s _________________ ERROR collecting gridData/tests/test_mrc.py __________________ 123s ImportError while importing test module '/tmp/autopkgtest.lDlKX0/build.2AS/src/gridData/tests/test_mrc.py'. 123s Hint: make sure your test modules/packages have valid Python names. 123s Traceback: 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 123s from . import multiarray 123s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 123s from . import overrides 123s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 123s from numpy.core._multiarray_umath import ( 123s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 123s 123s During handling of the above exception, another exception occurred: 123s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 123s from numpy.__config__ import show as show_config 123s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 123s from numpy.core._multiarray_umath import ( 123s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 123s raise ImportError(msg) 123s E ImportError: 123s E 123s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 123s E 123s E Importing the numpy C-extensions failed. This error can happen for 123s E many reasons, often due to issues with your setup or how NumPy was 123s E installed. 123s E 123s E We have compiled some common reasons and troubleshooting tips at: 123s E 123s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 123s E 123s E Please note and check the following: 123s E 123s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 123s E * The NumPy version is: "1.26.4" 123s E 123s E and make sure that they are the versions you expect. 123s E Please carefully study the documentation linked above for further help. 123s E 123s E Original error was: No module named 'numpy.core._multiarray_umath' 123s 123s The above exception was the direct cause of the following exception: 123s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 123s return _bootstrap._gcd_import(name[level:], package, level) 123s gridData/__init__.py:109: in 123s from .core import Grid 123s gridData/core.py:30: in 123s import numpy 123s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 123s raise ImportError(msg) from e 123s E ImportError: Error importing numpy: you should not try to import numpy from 123s E its source directory; please exit the numpy source tree, and relaunch 123s E your python interpreter from there. 123s =========================== short test summary info ============================ 123s ERROR gridData/tests/test_dx.py 123s ERROR gridData/tests/test_gOpenMol.py 123s ERROR gridData/tests/test_grid.py 123s ERROR gridData/tests/test_mrc.py 123s !!!!!!!!!!!!!!!!!!! Interrupted: 4 errors during collection !!!!!!!!!!!!!!!!!!!! 123s ============================== 4 errors in 0.17s =============================== 123s autopkgtest [02:54:11]: test command1: -----------------------] 124s autopkgtest [02:54:12]: test command1: - - - - - - - - - - results - - - - - - - - - - 124s command1 FAIL non-zero exit status 2 124s autopkgtest [02:54:12]: @@@@@@@@@@@@@@@@@@@@ summary 124s command1 FAIL non-zero exit status 2 137s nova [W] Skipping flock for amd64 137s Creating nova instance adt-plucky-i386-python-griddataformats-20241115-025208-juju-7f2275-prod-proposed-migration-environment-20-356a279c-a729-4a80-9b1f-baa6c964b1c1 from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)...