0s autopkgtest [13:15:45]: starting date and time: 2024-11-13 13:15:45+0000 0s autopkgtest [13:15:45]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [13:15:45]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.by65ud4p/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-deeptools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-26.secgroup --name adt-plucky-i386-python-deeptools-20241113-131545-juju-7f2275-prod-proposed-migration-environment-20-81a89e67-6412-4fd8-b09b-4c1703633533 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 52s autopkgtest [13:16:37]: testbed dpkg architecture: amd64 52s autopkgtest [13:16:37]: testbed apt version: 2.9.8 52s autopkgtest [13:16:37]: test architecture: i386 52s autopkgtest [13:16:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup 53s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 54s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB] 54s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [967 kB] 54s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 54s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.5 kB] 54s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [131 kB] 54s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [79.6 kB] 54s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 54s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [281 kB] 54s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [721 kB] 54s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [38.5 kB] 54s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [13.3 kB] 54s Fetched 2466 kB in 1s (2867 kB/s) 54s Reading package lists... 56s Reading package lists... 57s Building dependency tree... 57s Reading state information... 57s Calculating upgrade... 57s The following NEW packages will be installed: 57s python3.13-gdbm 57s The following packages will be upgraded: 57s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 58s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 58s Need to get 253 kB of archives. 58s After this operation, 147 kB of additional disk space will be used. 58s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 58s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 58s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 58s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 58s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 58s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.23.2-5ubuntu4 [152 kB] 58s Fetched 253 kB in 0s (579 kB/s) 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 58s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 58s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 58s Setting up python3-minimal (3.12.7-1) ... 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 58s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 59s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 59s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 59s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 59s Selecting previously unselected package python3.13-gdbm. 59s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 59s Unpacking python3.13-gdbm (3.13.0-2) ... 59s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 59s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 59s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_amd64.deb ... 59s Unpacking libgpgme11t64:amd64 (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 59s Setting up libgpgme11t64:amd64 (1.23.2-5ubuntu4) ... 59s Setting up python3.13-gdbm (3.13.0-2) ... 59s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 59s Setting up python3 (3.12.7-1) ... 59s Setting up python3-gdbm:amd64 (3.12.7-1) ... 59s Processing triggers for man-db (2.12.1-3) ... 59s Processing triggers for libc-bin (2.40-1ubuntu3) ... 59s Reading package lists... 60s Building dependency tree... 60s Reading state information... 60s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 60s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 60s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 60s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 60s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 61s Reading package lists... 61s Reading package lists... 61s Building dependency tree... 61s Reading state information... 62s Calculating upgrade... 62s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 62s Reading package lists... 62s Building dependency tree... 62s Reading state information... 62s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 65s autopkgtest [13:16:50]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 65s autopkgtest [13:16:50]: @@@@@@@@@@@@@@@@@@@@ apt-source python-deeptools 70s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-deeptools 3.5.5+dfsg-1 (dsc) [2548 B] 70s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-deeptools 3.5.5+dfsg-1 (tar) [24.6 MB] 70s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-deeptools 3.5.5+dfsg-1 (diff) [6080 B] 70s gpgv: Signature made Sun May 12 18:01:07 2024 UTC 70s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 70s gpgv: issuer "emollier@debian.org" 70s gpgv: Can't check signature: No public key 70s dpkg-source: warning: cannot verify inline signature for ./python-deeptools_3.5.5+dfsg-1.dsc: no acceptable signature found 71s autopkgtest [13:16:56]: testing package python-deeptools version 3.5.5+dfsg-1 71s autopkgtest [13:16:56]: build not needed 73s autopkgtest [13:16:58]: test pybuild-autopkgtest: preparing testbed 76s Note, using file '/tmp/autopkgtest.I77mHM/1-autopkgtest-satdep.dsc' to get the build dependencies 76s Reading package lists... 77s Building dependency tree... 77s Reading state information... 77s Starting pkgProblemResolver with broken count: 0 77s Starting 2 pkgProblemResolver with broken count: 0 77s Done 77s The following NEW packages will be installed: 77s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14 77s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu debhelper debugedit 77s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz 77s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx g++ g++-14 77s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 77s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian 77s libarchive-zip-perl libasan8 libbigwig0t64 libblas3 libcc1-0 77s libdebhelper-perl libdeflate0 libfile-stripnondeterminism-perl 77s libfontconfig1 libgcc-14-dev libgfortran5 libgomp1 libgraphite2-3 77s libharfbuzz0b libhts3t64 libhtscodecs2 libhwasan0 libimagequant0 libisl23 77s libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 77s libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0 77s liblcms2-2 liblerc4 liblsan0 libmpc3 libopenjp2-7 libpython3.13-minimal 77s libpython3.13-stdlib libqhull-r8.0 libquadmath0 libraqm0 libsharpyuv0 77s libstdc++-14-dev libtcl8.6 libtiff6 libtk8.6 libtool libtsan2 libubsan1 77s libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 m4 77s po-debconf pybuild-plugin-autopkgtest pybuild-plugin-pyproject 77s python-matplotlib-data python3-alabaster python3-all python3-appdirs 77s python3-brotli python3-build python3-contourpy python3-cycler 77s python3-dateutil python3-decorator python3-deeptools 77s python3-deeptoolsintervals python3-defusedxml python3-docutils 77s python3-fastjsonschema python3-fonttools python3-fs python3-imagesize 77s python3-iniconfig python3-installer python3-jupyter-core python3-kiwisolver 77s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-nbformat 77s python3-numpy python3-numpydoc python3-packaging python3-pil 77s python3-pil.imagetk python3-platformdirs python3-plotly python3-pluggy 77s python3-py2bit python3-pybigwig python3-pyproject-hooks python3-pysam 77s python3-pytest python3-roman python3-scipy python3-six 77s python3-snowballstemmer python3-sphinx python3-sympy python3-tabulate 77s python3-tenacity python3-tk python3-toml python3-traitlets python3-tz 77s python3-ufolib2 python3-unicodedata2 python3-wheel python3.12-tk python3.13 77s python3.13-minimal python3.13-tk sgml-base sphinx-common tk8.6-blt2.5 77s unicode-data x11-common xml-core 77s 0 upgraded, 155 newly installed, 0 to remove and 0 not upgraded. 77s Need to get 146 MB of archives. 77s After this operation, 607 MB of additional disk space will be used. 77s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 78s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 78s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB] 78s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 m4 amd64 1.4.19-4build1 [244 kB] 78s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 autoconf all 2.72-3 [382 kB] 78s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 autotools-dev all 20220109.1 [44.9 kB] 78s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 78s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 autopoint all 0.22.5-2 [616 kB] 78s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1085 kB] 78s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 78s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 78s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 78s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 78s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 78s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 78s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 78s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 78s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.15-1 [862 kB] 78s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 78s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 78s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 78s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 78s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 79s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 79s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 79s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 79s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 79s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 79s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 79s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 79s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 80s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 80s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 80s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 80s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 80s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 80s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 82s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 82s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 82s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 82s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 82s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 83s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 83s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 83s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 83s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 83s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 83s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libtool all 2.4.7-7build1 [166 kB] 83s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-autoreconf all 20 [16.1 kB] 83s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 83s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 83s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 83s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 debugedit amd64 1:5.1-1 [46.9 kB] 83s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 dwz amd64 0.15-1build6 [115 kB] 83s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 gettext amd64 0.22.5-2 [948 kB] 83s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 83s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 83s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 debhelper all 13.20ubuntu1 [893 kB] 83s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 dh-python all 6.20241024 [112 kB] 83s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB] 83s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 docutils-common all 0.21.2+dfsg-2 [131 kB] 83s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.2.1-1 [171 kB] 83s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbigwig0t64 amd64 0.4.7+dfsg-3.1build2 [30.2 kB] 83s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 83s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 83s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 83s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 83s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 83s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhtscodecs2 amd64 1.6.1-1 [132 kB] 83s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhts3t64 amd64 1.20+ds-1 [439 kB] 83s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 83s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 83s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 83s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 83s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 83s Get:76 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 83s Get:77 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 83s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libjson-perl all 4.10000-1 [81.9 kB] 83s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 83s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 83s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 83s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 83s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 84s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 84s Get:85 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 84s Get:86 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 84s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 84s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 84s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 84s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 84s Get:91 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 84s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu1 [169 kB] 84s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 84s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 84s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 84s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-toml all 0.10.2-1 [16.5 kB] 84s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-wheel all 0.44.0-1 [54.2 kB] 84s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-build all 1.2.2-1 [31.0 kB] 84s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 84s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 pybuild-plugin-pyproject all 6.20241024 [1728 B] 84s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-3 [2928 kB] 84s Get:102 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 85s Get:103 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 85s Get:104 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 85s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 85s Get:106 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 85s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.0-2 [217 kB] 85s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 85s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 85s Get:110 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 85s Get:111 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 85s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-deeptoolsintervals amd64 0.1.9-3build9 [52.9 kB] 85s Get:113 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 85s Get:114 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 10.4.0-1ubuntu1 [463 kB] 85s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.7-3 [116 kB] 85s Get:116 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-tk amd64 3.13.0-2 [106 kB] 85s Get:117 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-tk amd64 3.12.7-1 [9752 B] 85s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 10.4.0-1ubuntu1 [9394 B] 85s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 86s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 86s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 86s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 86s Get:123 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB] 86s Get:124 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 86s Get:125 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.0-1 [1282 kB] 86s Get:126 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 86s Get:127 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build1 [362 kB] 86s Get:128 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 87s Get:129 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 87s Get:130 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-2 [55.1 kB] 87s Get:131 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-3 [4545 kB] 87s Get:132 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-defusedxml all 0.7.1-2 [42.0 kB] 87s Get:133 http://ftpmaster.internal/ubuntu plucky/main amd64 sphinx-common all 7.4.7-4 [775 kB] 87s Get:134 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 87s Get:135 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-roman all 4.2-1 [10.0 kB] 87s Get:136 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 87s Get:137 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-imagesize all 1.4.1-1 [6844 B] 87s Get:138 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 87s Get:139 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-sphinx all 7.4.7-4 [593 kB] 87s Get:140 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB] 87s Get:141 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-numpydoc all 1.6.0-2 [50.5 kB] 87s Get:142 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fastjsonschema all 2.20.0-1 [20.1 kB] 87s Get:143 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB] 87s Get:144 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 87s Get:145 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jupyter-core all 5.7.2-4 [28.0 kB] 87s Get:146 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB] 88s Get:147 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tenacity all 8.5.0-0ubuntu1 [17.0 kB] 88s Get:148 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 88s Get:149 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-py2bit amd64 0.3.1-3 [19.8 kB] 88s Get:150 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pybigwig amd64 0.3.23+dfsg-1 [41.6 kB] 88s Get:151 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pysam amd64 0.22.1+ds-2 [3504 kB] 88s Get:152 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-deeptools all 3.5.5+dfsg-1 [141 kB] 88s Get:153 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 88s Get:154 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 88s Get:155 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 88s Fetched 146 MB in 11s (13.6 MB/s) 88s Selecting previously unselected package libpython3.13-minimal:amd64. 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75548 files and directories currently installed.) 88s Preparing to unpack .../000-libpython3.13-minimal_3.13.0-2_amd64.deb ... 88s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 88s Selecting previously unselected package python3.13-minimal. 88s Preparing to unpack .../001-python3.13-minimal_3.13.0-2_amd64.deb ... 88s Unpacking python3.13-minimal (3.13.0-2) ... 88s Selecting previously unselected package sgml-base. 89s Preparing to unpack .../002-sgml-base_1.31_all.deb ... 89s Unpacking sgml-base (1.31) ... 89s Selecting previously unselected package m4. 89s Preparing to unpack .../003-m4_1.4.19-4build1_amd64.deb ... 89s Unpacking m4 (1.4.19-4build1) ... 89s Selecting previously unselected package autoconf. 89s Preparing to unpack .../004-autoconf_2.72-3_all.deb ... 89s Unpacking autoconf (2.72-3) ... 89s Selecting previously unselected package autotools-dev. 89s Preparing to unpack .../005-autotools-dev_20220109.1_all.deb ... 89s Unpacking autotools-dev (20220109.1) ... 89s Selecting previously unselected package automake. 89s Preparing to unpack .../006-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 89s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 89s Selecting previously unselected package autopoint. 89s Preparing to unpack .../007-autopoint_0.22.5-2_all.deb ... 89s Unpacking autopoint (0.22.5-2) ... 89s Selecting previously unselected package libtcl8.6:amd64. 89s Preparing to unpack .../008-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... 89s Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... 89s Selecting previously unselected package fonts-dejavu-mono. 89s Preparing to unpack .../009-fonts-dejavu-mono_2.37-8_all.deb ... 89s Unpacking fonts-dejavu-mono (2.37-8) ... 89s Selecting previously unselected package fonts-dejavu-core. 89s Preparing to unpack .../010-fonts-dejavu-core_2.37-8_all.deb ... 89s Unpacking fonts-dejavu-core (2.37-8) ... 89s Selecting previously unselected package fontconfig-config. 89s Preparing to unpack .../011-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 89s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 89s Selecting previously unselected package libfontconfig1:amd64. 89s Preparing to unpack .../012-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 89s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 89s Selecting previously unselected package libxrender1:amd64. 89s Preparing to unpack .../013-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 89s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 89s Selecting previously unselected package libxft2:amd64. 89s Preparing to unpack .../014-libxft2_2.3.6-1build1_amd64.deb ... 89s Unpacking libxft2:amd64 (2.3.6-1build1) ... 89s Selecting previously unselected package x11-common. 89s Preparing to unpack .../015-x11-common_1%3a7.7+23ubuntu3_all.deb ... 89s Unpacking x11-common (1:7.7+23ubuntu3) ... 89s Selecting previously unselected package libxss1:amd64. 89s Preparing to unpack .../016-libxss1_1%3a1.2.3-1build3_amd64.deb ... 89s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 89s Selecting previously unselected package libtk8.6:amd64. 89s Preparing to unpack .../017-libtk8.6_8.6.15-1_amd64.deb ... 89s Unpacking libtk8.6:amd64 (8.6.15-1) ... 89s Selecting previously unselected package tk8.6-blt2.5. 89s Preparing to unpack .../018-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 89s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 89s Selecting previously unselected package blt. 89s Preparing to unpack .../019-blt_2.5.3+dfsg-7build1_amd64.deb ... 89s Unpacking blt (2.5.3+dfsg-7build1) ... 89s Selecting previously unselected package libisl23:amd64. 89s Preparing to unpack .../020-libisl23_0.27-1_amd64.deb ... 89s Unpacking libisl23:amd64 (0.27-1) ... 89s Selecting previously unselected package libmpc3:amd64. 89s Preparing to unpack .../021-libmpc3_1.3.1-1build2_amd64.deb ... 89s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 89s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 89s Preparing to unpack .../022-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 89s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 90s Selecting previously unselected package cpp-14. 90s Preparing to unpack .../023-cpp-14_14.2.0-8ubuntu1_amd64.deb ... 90s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 90s Selecting previously unselected package cpp-x86-64-linux-gnu. 90s Preparing to unpack .../024-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 90s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 90s Selecting previously unselected package cpp. 90s Preparing to unpack .../025-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 90s Unpacking cpp (4:14.1.0-2ubuntu1) ... 90s Selecting previously unselected package libcc1-0:amd64. 90s Preparing to unpack .../026-libcc1-0_14.2.0-8ubuntu1_amd64.deb ... 90s Unpacking libcc1-0:amd64 (14.2.0-8ubuntu1) ... 90s Selecting previously unselected package libgomp1:amd64. 90s Preparing to unpack .../027-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 90s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 90s Selecting previously unselected package libitm1:amd64. 90s Preparing to unpack .../028-libitm1_14.2.0-8ubuntu1_amd64.deb ... 90s Unpacking libitm1:amd64 (14.2.0-8ubuntu1) ... 90s Selecting previously unselected package libasan8:amd64. 90s Preparing to unpack .../029-libasan8_14.2.0-8ubuntu1_amd64.deb ... 90s Unpacking libasan8:amd64 (14.2.0-8ubuntu1) ... 90s Selecting previously unselected package liblsan0:amd64. 90s Preparing to unpack .../030-liblsan0_14.2.0-8ubuntu1_amd64.deb ... 90s Unpacking liblsan0:amd64 (14.2.0-8ubuntu1) ... 90s Selecting previously unselected package libtsan2:amd64. 90s Preparing to unpack .../031-libtsan2_14.2.0-8ubuntu1_amd64.deb ... 90s Unpacking libtsan2:amd64 (14.2.0-8ubuntu1) ... 90s Selecting previously unselected package libubsan1:amd64. 90s Preparing to unpack .../032-libubsan1_14.2.0-8ubuntu1_amd64.deb ... 90s Unpacking libubsan1:amd64 (14.2.0-8ubuntu1) ... 90s Selecting previously unselected package libhwasan0:amd64. 90s Preparing to unpack .../033-libhwasan0_14.2.0-8ubuntu1_amd64.deb ... 90s Unpacking libhwasan0:amd64 (14.2.0-8ubuntu1) ... 90s Selecting previously unselected package libquadmath0:amd64. 90s Preparing to unpack .../034-libquadmath0_14.2.0-8ubuntu1_amd64.deb ... 90s Unpacking libquadmath0:amd64 (14.2.0-8ubuntu1) ... 90s Selecting previously unselected package libgcc-14-dev:amd64. 90s Preparing to unpack .../035-libgcc-14-dev_14.2.0-8ubuntu1_amd64.deb ... 90s Unpacking libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 90s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 90s Preparing to unpack .../036-gcc-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 90s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 90s Selecting previously unselected package gcc-14. 90s Preparing to unpack .../037-gcc-14_14.2.0-8ubuntu1_amd64.deb ... 90s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 90s Selecting previously unselected package gcc-x86-64-linux-gnu. 90s Preparing to unpack .../038-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 90s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 90s Selecting previously unselected package gcc. 90s Preparing to unpack .../039-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 90s Unpacking gcc (4:14.1.0-2ubuntu1) ... 90s Selecting previously unselected package libstdc++-14-dev:amd64. 90s Preparing to unpack .../040-libstdc++-14-dev_14.2.0-8ubuntu1_amd64.deb ... 90s Unpacking libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 91s Selecting previously unselected package g++-14-x86-64-linux-gnu. 91s Preparing to unpack .../041-g++-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 91s Unpacking g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 91s Selecting previously unselected package g++-14. 91s Preparing to unpack .../042-g++-14_14.2.0-8ubuntu1_amd64.deb ... 91s Unpacking g++-14 (14.2.0-8ubuntu1) ... 91s Selecting previously unselected package g++-x86-64-linux-gnu. 91s Preparing to unpack .../043-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 91s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 91s Selecting previously unselected package g++. 91s Preparing to unpack .../044-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 91s Unpacking g++ (4:14.1.0-2ubuntu1) ... 91s Selecting previously unselected package build-essential. 91s Preparing to unpack .../045-build-essential_12.10ubuntu1_amd64.deb ... 91s Unpacking build-essential (12.10ubuntu1) ... 91s Selecting previously unselected package libdebhelper-perl. 91s Preparing to unpack .../046-libdebhelper-perl_13.20ubuntu1_all.deb ... 91s Unpacking libdebhelper-perl (13.20ubuntu1) ... 91s Selecting previously unselected package libtool. 91s Preparing to unpack .../047-libtool_2.4.7-7build1_all.deb ... 91s Unpacking libtool (2.4.7-7build1) ... 91s Selecting previously unselected package dh-autoreconf. 91s Preparing to unpack .../048-dh-autoreconf_20_all.deb ... 91s Unpacking dh-autoreconf (20) ... 91s Selecting previously unselected package libarchive-zip-perl. 91s Preparing to unpack .../049-libarchive-zip-perl_1.68-1_all.deb ... 91s Unpacking libarchive-zip-perl (1.68-1) ... 91s Selecting previously unselected package libfile-stripnondeterminism-perl. 91s Preparing to unpack .../050-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 91s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 91s Selecting previously unselected package dh-strip-nondeterminism. 91s Preparing to unpack .../051-dh-strip-nondeterminism_1.14.0-1_all.deb ... 91s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 91s Selecting previously unselected package debugedit. 91s Preparing to unpack .../052-debugedit_1%3a5.1-1_amd64.deb ... 91s Unpacking debugedit (1:5.1-1) ... 91s Selecting previously unselected package dwz. 91s Preparing to unpack .../053-dwz_0.15-1build6_amd64.deb ... 91s Unpacking dwz (0.15-1build6) ... 91s Selecting previously unselected package gettext. 91s Preparing to unpack .../054-gettext_0.22.5-2_amd64.deb ... 91s Unpacking gettext (0.22.5-2) ... 91s Selecting previously unselected package intltool-debian. 91s Preparing to unpack .../055-intltool-debian_0.35.0+20060710.6_all.deb ... 91s Unpacking intltool-debian (0.35.0+20060710.6) ... 91s Selecting previously unselected package po-debconf. 91s Preparing to unpack .../056-po-debconf_1.0.21+nmu1_all.deb ... 91s Unpacking po-debconf (1.0.21+nmu1) ... 91s Selecting previously unselected package debhelper. 91s Preparing to unpack .../057-debhelper_13.20ubuntu1_all.deb ... 91s Unpacking debhelper (13.20ubuntu1) ... 91s Selecting previously unselected package dh-python. 91s Preparing to unpack .../058-dh-python_6.20241024_all.deb ... 91s Unpacking dh-python (6.20241024) ... 91s Selecting previously unselected package xml-core. 91s Preparing to unpack .../059-xml-core_0.19_all.deb ... 91s Unpacking xml-core (0.19) ... 91s Selecting previously unselected package docutils-common. 91s Preparing to unpack .../060-docutils-common_0.21.2+dfsg-2_all.deb ... 91s Unpacking docutils-common (0.21.2+dfsg-2) ... 91s Selecting previously unselected package fonts-lyx. 91s Preparing to unpack .../061-fonts-lyx_2.4.2.1-1_all.deb ... 91s Unpacking fonts-lyx (2.4.2.1-1) ... 91s Selecting previously unselected package libbigwig0t64:amd64. 91s Preparing to unpack .../062-libbigwig0t64_0.4.7+dfsg-3.1build2_amd64.deb ... 91s Unpacking libbigwig0t64:amd64 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libhtscodecs2:amd64. 91s Preparing to unpack .../068-libhtscodecs2_1.6.1-1_amd64.deb ... 91s Unpacking libhtscodecs2:amd64 (1.6.1-1) ... 91s Selecting previously unselected package libhts3t64:amd64. 91s Preparing to unpack .../069-libhts3t64_1.20+ds-1_amd64.deb ... 91s Unpacking libhts3t64:amd64 (1.20+ds-1) ... 91s Selecting previously unselected package libimagequant0:amd64. 91s Preparing to unpack .../070-libimagequant0_2.18.0-1build1_amd64.deb ... 91s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 91s Selecting previously unselected package libjpeg-turbo8:amd64. 91s Preparing to unpack .../071-libjpeg-turbo8_2.1.5-2ubuntu2_amd64.deb ... 91s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 91s Selecting previously unselected package libjpeg8:amd64. 91s Preparing to unpack .../072-libjpeg8_8c-2ubuntu11_amd64.deb ... 91s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 92s Selecting previously unselected package libjs-jquery. 92s Preparing to unpack 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previously unselected package libraqm0:amd64. 92s Preparing to unpack .../084-libraqm0_0.10.1-1build1_amd64.deb ... 92s Unpacking libraqm0:amd64 (0.10.1-1build1) ... 92s Selecting previously unselected package libsharpyuv0:amd64. 92s Preparing to unpack .../085-libsharpyuv0_1.4.0-0.1_amd64.deb ... 92s Unpacking libsharpyuv0:amd64 (1.4.0-0.1) ... 92s Selecting previously unselected package libjbig0:amd64. 92s Preparing to unpack .../086-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 92s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 92s Selecting previously unselected package libwebp7:amd64. 92s Preparing to unpack .../087-libwebp7_1.4.0-0.1_amd64.deb ... 92s Unpacking libwebp7:amd64 (1.4.0-0.1) ... 92s Selecting previously unselected package libtiff6:amd64. 92s Preparing to unpack .../088-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 92s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 92s Selecting previously unselected package libwebpdemux2:amd64. 92s Preparing to unpack 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up dh-python (6.20241024) ... 97s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 97s Setting up liblcms2-2:amd64 (2.16-2) ... 97s Setting up python3-iniconfig (1.1.1-2) ... 97s Setting up libsharpyuv0:amd64 (1.4.0-0.1) ... 97s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu2) ... 97s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 97s Setting up python3-deeptoolsintervals (0.1.9-3build9) ... 97s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 97s Setting up python3-defusedxml (0.7.1-2) ... 97s Setting up libarchive-zip-perl (1.68-1) ... 97s Setting up python3-alabaster (0.7.16-0.1) ... 97s Setting up python3-unicodedata2 (15.1.0+ds-1build1) ... 97s Setting up fonts-lyx (2.4.2.1-1) ... 97s Setting up python3-tenacity (8.5.0-0ubuntu1) ... 98s Setting up libdebhelper-perl (13.20ubuntu1) ... 98s Setting up x11-common (1:7.7+23ubuntu3) ... 98s Setting up libdeflate0:amd64 (1.22-1) ... 98s Setting up python3-tabulate (0.9.0-1) ... 98s Setting up m4 (1.4.19-4build1) ... 98s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 98s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 98s Setting up python3-wheel (0.44.0-1) ... 98s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 98s Setting up python3-platformdirs (4.3.6-1) ... 98s Setting up python3-tz (2024.1-2) ... 99s Setting up unicode-data (15.1.0-1) ... 99s Setting up python3-six (1.16.0-7) ... 99s Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... 99s Setting up python3-roman (4.2-1) ... 99s Setting up python3-decorator (5.1.1-5) ... 99s Setting up autotools-dev (20220109.1) ... 99s Setting up libblas3:amd64 (3.12.0-3build2) ... 99s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 99s Setting up python3-packaging (24.1-1) ... 99s Setting up python3-pyproject-hooks (1.2.0-1) ... 99s Setting up python3-snowballstemmer (2.2.0-4build1) ... 100s Setting up python3-brotli (1.1.0-2build2) ... 100s 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up python3-traitlets (5.14.3+really5.14.3-1) ... 101s Setting up libasan8:amd64 (14.2.0-8ubuntu1) ... 101s Setting up libjson-perl (4.10000-1) ... 101s Setting up libxslt1.1:amd64 (1.1.39-0exp1ubuntu1) ... 101s Setting up debugedit (1:5.1-1) ... 101s Setting up libhts3t64:amd64 (1.20+ds-1) ... 101s Setting up libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 101s Setting up python3.13-minimal (3.13.0-2) ... 102s Setting up libharfbuzz0b:amd64 (10.0.1-1) ... 102s Setting up python3-dateutil (2.9.0-2) ... 102s Setting up libbigwig0t64:amd64 (0.4.7+dfsg-3.1build2) ... 102s Setting up python3-py2bit (0.3.1-3) ... 102s Setting up sgml-base (1.31) ... 102s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 102s Setting up libtsan2:amd64 (14.2.0-8ubuntu1) ... 102s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 102s Setting up python3-mpmath (1.3.0-1) ... 103s Setting up libisl23:amd64 (0.27-1) ... 103s Setting up python3-build (1.2.2-1) ... 103s Setting up python-matplotlib-data (3.8.3-3) ... 103s 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(liblapack.so.3-x86_64-linux-gnu) in auto mode 113s Setting up gettext (0.22.5-2) ... 113s Setting up python3-pysam (0.22.1+ds-2) ... 113s Setting up python3.13 (3.13.0-2) ... 114s Setting up pybuild-plugin-pyproject (6.20241024) ... 114s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 114s Setting up python3-pytest (8.3.3-1) ... 114s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 114s Setting up python3-all (3.12.7-1) ... 114s Setting up python3-nbformat (5.9.1-1) ... 114s Setting up intltool-debian (0.35.0+20060710.6) ... 114s Setting up python3-fs (2.4.16-4) ... 115s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 115s Setting up libraqm0:amd64 (0.10.1-1build1) ... 115s Setting up cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 115s Setting up python3-plotly (5.20.0+dfsg-1) ... 125s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 128s Setting up libjs-sphinxdoc (7.4.7-4) ... 128s Setting up cpp-14 (14.2.0-8ubuntu1) ... 128s Setting up python3-pybigwig (0.3.23+dfsg-1) ... 128s Setting up dh-strip-nondeterminism (1.14.0-1) ... 128s Setting up python3-lxml:amd64 (5.3.0-1) ... 128s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 128s Setting up xml-core (0.19) ... 128s Setting up python3-contourpy (1.3.0-2) ... 128s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 128s Setting up libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 128s Setting up libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 128s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 128s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 128s Setting up libxft2:amd64 (2.3.6-1build1) ... 128s Setting up python3-scipy (1.13.1-5) ... 133s Setting up po-debconf (1.0.21+nmu1) ... 133s Setting up libtk8.6:amd64 (8.6.15-1) ... 133s Setting up python3.12-tk (3.12.7-3) ... 133s Setting up python3.13-tk (3.13.0-2) ... 133s Setting up python3-pil:amd64 (10.4.0-1ubuntu1) ... 134s Setting up sphinx-common (7.4.7-4) ... 134s Setting up cpp (4:14.1.0-2ubuntu1) ... 134s Setting up gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 134s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 134s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 134s Setting up blt (2.5.3+dfsg-7build1) ... 134s Setting up python3-tk:amd64 (3.12.7-1) ... 134s Setting up gcc-14 (14.2.0-8ubuntu1) ... 134s Setting up python3-pil.imagetk:amd64 (10.4.0-1ubuntu1) ... 134s Setting up g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 134s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 134s Setting up g++-14 (14.2.0-8ubuntu1) ... 134s Setting up libtool (2.4.7-7build1) ... 134s Setting up gcc (4:14.1.0-2ubuntu1) ... 134s Setting up dh-autoreconf (20) ... 134s Setting up g++ (4:14.1.0-2ubuntu1) ... 134s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 134s Setting up build-essential (12.10ubuntu1) ... 134s Setting up debhelper (13.20ubuntu1) ... 134s Setting up pybuild-plugin-autopkgtest (6.20241024) ... 134s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 134s Setting up python3-fonttools (4.46.0-1build2) ... 136s Setting up python3-matplotlib (3.8.3-3) ... 138s Processing triggers for libc-bin (2.40-1ubuntu3) ... 138s Processing triggers for systemd (256.5-2ubuntu4) ... 138s Processing triggers for man-db (2.12.1-3) ... 139s Processing triggers for install-info (7.1.1-1) ... 139s Processing triggers for sgml-base (1.31) ... 139s Setting up docutils-common (0.21.2+dfsg-2) ... 139s Processing triggers for sgml-base (1.31) ... 139s Setting up python3-docutils (0.21.2+dfsg-2) ... 140s Setting up python3-sphinx (7.4.7-4) ... 141s Setting up python3-numpydoc (1.6.0-2) ... 141s Setting up python3-deeptools (3.5.5+dfsg-1) ... 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 144s Starting pkgProblemResolver with broken count: 0 145s Starting 2 pkgProblemResolver with broken count: 0 145s Done 145s The following NEW packages will be installed: 145s autopkgtest-satdep 145s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 145s Need to get 0 B/700 B of archives. 145s After this operation, 0 B of additional disk space will be used. 145s Get:1 /tmp/autopkgtest.I77mHM/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 145s Selecting previously unselected package autopkgtest-satdep. 145s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 101745 files and directories currently installed.) 145s Preparing to unpack .../2-autopkgtest-satdep.deb ... 145s Unpacking autopkgtest-satdep (0) ... 145s Setting up autopkgtest-satdep (0) ... 147s (Reading database ... 101745 files and directories currently installed.) 147s Removing autopkgtest-satdep (0) ... 147s autopkgtest [13:18:12]: test pybuild-autopkgtest: pybuild-autopkgtest 147s autopkgtest [13:18:12]: test pybuild-autopkgtest: [----------------------- 148s pybuild-autopkgtest 148s I: pybuild base:311: cd /tmp/autopkgtest.I77mHM/autopkgtest_tmp/build; python3.13 -m pytest -v /tmp/autopkgtest.I77mHM/build.aRU/src/deeptools/ 148s ============================= test session starts ============================== 148s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 148s cachedir: .pytest_cache 148s rootdir: /tmp/autopkgtest.I77mHM/build.aRU/src 148s configfile: pyproject.toml 148s plugins: typeguard-4.4.1 149s collecting ... collected 1 item / 10 errors 149s 149s ==================================== ERRORS ==================================== 149s ______ ERROR collecting deeptools/test/test_bamCoverage_and_bamCompare.py ______ 149s ImportError while importing test module '/tmp/autopkgtest.I77mHM/build.aRU/src/deeptools/test/test_bamCoverage_and_bamCompare.py'. 149s Hint: make sure your test modules/packages have valid Python names. 149s Traceback: 149s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 149s from . import multiarray 149s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 149s from . import overrides 149s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 149s from numpy.core._multiarray_umath import ( 149s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 149s 149s During handling of the above exception, another exception occurred: 149s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 149s from numpy.__config__ import show as show_config 149s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 149s from numpy.core._multiarray_umath import ( 149s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 149s raise ImportError(msg) 149s E ImportError: 149s E 149s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 149s E 149s E Importing the numpy C-extensions failed. This error can happen for 149s E many reasons, often due to issues with your setup or how NumPy was 149s E installed. 149s E 149s E We have compiled some common reasons and troubleshooting tips at: 149s E 149s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 149s E 149s E Please note and check the following: 149s E 149s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 149s E * The NumPy version is: "1.26.4" 149s E 149s E and make sure that they are the versions you expect. 149s E Please carefully study the documentation linked above for further help. 149s E 149s E Original error was: No module named 'numpy.core._multiarray_umath' 149s 149s The above exception was the direct cause of the following exception: 149s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 149s return _bootstrap._gcd_import(name[level:], package, level) 149s ../../build.aRU/src/deeptools/test/test_bamCoverage_and_bamCompare.py:1: in 149s import deeptools.bamCoverage as bam_cov 149s ../../build.aRU/src/deeptools/bamCoverage.py:7: in 149s import numpy as np 149s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 149s raise ImportError(msg) from e 149s E ImportError: Error importing numpy: you should not try to import numpy from 149s E its source directory; please exit the numpy source tree, and relaunch 149s E your python interpreter from there. 149s ____________ ERROR collecting deeptools/test/test_bigwigAverage.py _____________ 149s ImportError while importing test module '/tmp/autopkgtest.I77mHM/build.aRU/src/deeptools/test/test_bigwigAverage.py'. 149s Hint: make sure your test modules/packages have valid Python names. 149s Traceback: 149s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 149s from . import multiarray 149s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 149s from . import overrides 149s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 149s from numpy.core._multiarray_umath import ( 149s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 149s 149s During handling of the above exception, another exception occurred: 149s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 149s from numpy.__config__ import show as show_config 149s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 149s from numpy.core._multiarray_umath import ( 149s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 149s raise ImportError(msg) 149s E ImportError: 149s E 149s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 149s E 149s E Importing the numpy C-extensions failed. This error can happen for 149s E many reasons, often due to issues with your setup or how NumPy was 149s E installed. 149s E 149s E We have compiled some common reasons and troubleshooting tips at: 149s E 149s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 149s E 149s E Please note and check the following: 149s E 149s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 149s E * The NumPy version is: "1.26.4" 149s E 149s E and make sure that they are the versions you expect. 149s E Please carefully study the documentation linked above for further help. 149s E 149s E Original error was: No module named 'numpy.core._multiarray_umath' 149s 149s The above exception was the direct cause of the following exception: 149s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 149s return _bootstrap._gcd_import(name[level:], package, level) 149s ../../build.aRU/src/deeptools/test/test_bigwigAverage.py:1: in 149s import deeptools.bigwigAverage as bwAve 149s ../../build.aRU/src/deeptools/bigwigAverage.py:5: in 149s import numpy as np 149s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 149s raise ImportError(msg) from e 149s E ImportError: Error importing numpy: you should not try to import numpy from 149s E its source directory; please exit the numpy source tree, and relaunch 149s E your python interpreter from there. 149s _ ERROR collecting deeptools/test/test_bigwigCompare_and_multiBigwigSummary.py _ 149s ImportError while importing test module '/tmp/autopkgtest.I77mHM/build.aRU/src/deeptools/test/test_bigwigCompare_and_multiBigwigSummary.py'. 149s Hint: make sure your test modules/packages have valid Python names. 149s Traceback: 149s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 149s from . import multiarray 149s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 149s from . import overrides 149s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 149s from numpy.core._multiarray_umath import ( 149s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 149s 149s During handling of the above exception, another exception occurred: 149s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 149s from numpy.__config__ import show as show_config 149s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 149s from numpy.core._multiarray_umath import ( 149s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 149s raise ImportError(msg) 149s E ImportError: 149s E 149s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 149s E 149s E Importing the numpy C-extensions failed. This error can happen for 149s E many reasons, often due to issues with your setup or how NumPy was 149s E installed. 149s E 149s E We have compiled some common reasons and troubleshooting tips at: 149s E 149s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 149s E 149s E Please note and check the following: 149s E 149s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 149s E * The NumPy version is: "1.26.4" 149s E 149s E and make sure that they are the versions you expect. 149s E Please carefully study the documentation linked above for further help. 149s E 149s E Original error was: No module named 'numpy.core._multiarray_umath' 149s 149s The above exception was the direct cause of the following exception: 149s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 149s return _bootstrap._gcd_import(name[level:], package, level) 149s ../../build.aRU/src/deeptools/test/test_bigwigCompare_and_multiBigwigSummary.py:1: in 149s import deeptools.bigwigCompare as bwComp 149s ../../build.aRU/src/deeptools/bigwigCompare.py:5: in 149s from deeptools.getRatio import getRatio 149s ../../build.aRU/src/deeptools/getRatio.py:1: in 149s import numpy as np 149s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 149s raise ImportError(msg) from e 149s E ImportError: Error importing numpy: you should not try to import numpy from 149s E its source directory; please exit the numpy source tree, and relaunch 149s E your python interpreter from there. 149s _______ ERROR collecting deeptools/test/test_computeMatrixOperations.py ________ 149s ImportError while importing test module '/tmp/autopkgtest.I77mHM/build.aRU/src/deeptools/test/test_computeMatrixOperations.py'. 149s Hint: make sure your test modules/packages have valid Python names. 149s Traceback: 149s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 149s from . import multiarray 149s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 149s from . import overrides 149s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 149s from numpy.core._multiarray_umath import ( 149s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 149s 149s During handling of the above exception, another exception occurred: 149s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 149s from numpy.__config__ import show as show_config 149s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 149s from numpy.core._multiarray_umath import ( 149s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 149s raise ImportError(msg) 149s E ImportError: 149s E 149s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 149s E 149s E Importing the numpy C-extensions failed. This error can happen for 149s E many reasons, often due to issues with your setup or how NumPy was 149s E installed. 149s E 149s E We have compiled some common reasons and troubleshooting tips at: 149s E 149s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 149s E 149s E Please note and check the following: 149s E 149s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 149s E * The NumPy version is: "1.26.4" 149s E 149s E and make sure that they are the versions you expect. 149s E Please carefully study the documentation linked above for further help. 149s E 149s E Original error was: No module named 'numpy.core._multiarray_umath' 149s 149s The above exception was the direct cause of the following exception: 149s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 149s return _bootstrap._gcd_import(name[level:], package, level) 149s ../../build.aRU/src/deeptools/test/test_computeMatrixOperations.py:3: in 149s import deeptools.computeMatrixOperations as cmo 149s ../../build.aRU/src/deeptools/computeMatrixOperations.py:2: in 149s import deeptools.heatmapper as heatmapper 149s ../../build.aRU/src/deeptools/heatmapper.py:4: in 149s import numpy as np 149s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 149s raise ImportError(msg) from e 149s E ImportError: Error importing numpy: you should not try to import numpy from 149s E its source directory; please exit the numpy source tree, and relaunch 149s E your python interpreter from there. 149s ___________ ERROR collecting deeptools/test/test_countReadsPerBin.py ___________ 149s ImportError while importing test module '/tmp/autopkgtest.I77mHM/build.aRU/src/deeptools/test/test_countReadsPerBin.py'. 149s Hint: make sure your test modules/packages have valid Python names. 149s Traceback: 149s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 149s from . import multiarray 149s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 149s from . import overrides 149s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 149s from numpy.core._multiarray_umath import ( 149s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 149s 149s During handling of the above exception, another exception occurred: 149s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 149s from numpy.__config__ import show as show_config 149s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 149s from numpy.core._multiarray_umath import ( 149s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 149s raise ImportError(msg) 149s E ImportError: 149s E 149s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 149s E 149s E Importing the numpy C-extensions failed. This error can happen for 149s E many reasons, often due to issues with your setup or how NumPy was 149s E installed. 149s E 149s E We have compiled some common reasons and troubleshooting tips at: 149s E 149s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 149s E 149s E Please note and check the following: 149s E 149s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 149s E * The NumPy version is: "1.26.4" 149s E 149s E and make sure that they are the versions you expect. 149s E Please carefully study the documentation linked above for further help. 149s E 149s E Original error was: No module named 'numpy.core._multiarray_umath' 149s 149s The above exception was the direct cause of the following exception: 149s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 149s return _bootstrap._gcd_import(name[level:], package, level) 149s ../../build.aRU/src/deeptools/test/test_countReadsPerBin.py:3: in 149s import deeptools.countReadsPerBin as cr 149s ../../build.aRU/src/deeptools/countReadsPerBin.py:6: in 149s import numpy as np 149s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 149s raise ImportError(msg) from e 149s E ImportError: Error importing numpy: you should not try to import numpy from 149s E its source directory; please exit the numpy source tree, and relaunch 149s E your python interpreter from there. 149s ______________ ERROR collecting deeptools/test/test_heatmapper.py ______________ 149s ImportError while importing test module '/tmp/autopkgtest.I77mHM/build.aRU/src/deeptools/test/test_heatmapper.py'. 149s Hint: make sure your test modules/packages have valid Python names. 149s Traceback: 149s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 149s from . import multiarray 149s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 149s from . import overrides 149s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 149s from numpy.core._multiarray_umath import ( 149s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 149s 149s During handling of the above exception, another exception occurred: 149s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 149s from numpy.__config__ import show as show_config 149s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 149s from numpy.core._multiarray_umath import ( 149s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 149s raise ImportError(msg) 149s E ImportError: 149s E 149s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 149s E 149s E Importing the numpy C-extensions failed. This error can happen for 149s E many reasons, often due to issues with your setup or how NumPy was 149s E installed. 149s E 149s E We have compiled some common reasons and troubleshooting tips at: 149s E 149s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 149s E 149s E Please note and check the following: 149s E 149s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 149s E * The NumPy version is: "1.26.4" 149s E 149s E and make sure that they are the versions you expect. 149s E Please carefully study the documentation linked above for further help. 149s E 149s E Original error was: No module named 'numpy.core._multiarray_umath' 149s 149s The above exception was the direct cause of the following exception: 149s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 149s return _bootstrap._gcd_import(name[level:], package, level) 149s ../../build.aRU/src/deeptools/test/test_heatmapper.py:4: in 149s import deeptools.computeMatrix 149s ../../build.aRU/src/deeptools/computeMatrix.py:8: in 149s from deeptools import heatmapper 149s ../../build.aRU/src/deeptools/heatmapper.py:4: in 149s import numpy as np 149s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 149s raise ImportError(msg) from e 149s E ImportError: Error importing numpy: you should not try to import numpy from 149s E its source directory; please exit the numpy source tree, and relaunch 149s E your python interpreter from there. 149s ___________ ERROR collecting deeptools/test/test_multiBamSummary.py ____________ 149s ImportError while importing test module '/tmp/autopkgtest.I77mHM/build.aRU/src/deeptools/test/test_multiBamSummary.py'. 149s Hint: make sure your test modules/packages have valid Python names. 149s Traceback: 149s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 149s from . import multiarray 149s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 149s from . import overrides 149s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 149s from numpy.core._multiarray_umath import ( 149s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 149s 149s During handling of the above exception, another exception occurred: 149s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 149s from numpy.__config__ import show as show_config 149s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 149s from numpy.core._multiarray_umath import ( 149s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 149s raise ImportError(msg) 149s E ImportError: 149s E 149s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 149s E 149s E Importing the numpy C-extensions failed. This error can happen for 149s E many reasons, often due to issues with your setup or how NumPy was 149s E installed. 149s E 149s E We have compiled some common reasons and troubleshooting tips at: 149s E 149s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 149s E 149s E Please note and check the following: 149s E 149s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 149s E * The NumPy version is: "1.26.4" 149s E 149s E and make sure that they are the versions you expect. 149s E Please carefully study the documentation linked above for further help. 149s E 149s E Original error was: No module named 'numpy.core._multiarray_umath' 149s 149s The above exception was the direct cause of the following exception: 149s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 149s return _bootstrap._gcd_import(name[level:], package, level) 149s ../../build.aRU/src/deeptools/test/test_multiBamSummary.py:1: in 149s import deeptools.multiBamSummary as mbs 149s ../../build.aRU/src/deeptools/multiBamSummary.py:7: in 149s import numpy as np 149s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 149s raise ImportError(msg) from e 149s E ImportError: Error importing numpy: you should not try to import numpy from 149s E its source directory; please exit the numpy source tree, and relaunch 149s E your python interpreter from there. 149s _____________ ERROR collecting deeptools/test/test_plotCoverage.py _____________ 149s ImportError while importing test module '/tmp/autopkgtest.I77mHM/build.aRU/src/deeptools/test/test_plotCoverage.py'. 149s Hint: make sure your test modules/packages have valid Python names. 149s Traceback: 149s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 149s from . import multiarray 149s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 149s from . import overrides 149s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 149s from numpy.core._multiarray_umath import ( 149s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 149s 149s During handling of the above exception, another exception occurred: 149s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 149s from numpy.__config__ import show as show_config 149s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 149s from numpy.core._multiarray_umath import ( 149s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 149s raise ImportError(msg) 149s E ImportError: 149s E 149s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 149s E 149s E Importing the numpy C-extensions failed. This error can happen for 149s E many reasons, often due to issues with your setup or how NumPy was 149s E installed. 149s E 149s E We have compiled some common reasons and troubleshooting tips at: 149s E 149s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 149s E 149s E Please note and check the following: 149s E 149s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 149s E * The NumPy version is: "1.26.4" 149s E 149s E and make sure that they are the versions you expect. 149s E Please carefully study the documentation linked above for further help. 149s E 149s E Original error was: No module named 'numpy.core._multiarray_umath' 149s 149s The above exception was the direct cause of the following exception: 149s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 149s return _bootstrap._gcd_import(name[level:], package, level) 149s ../../build.aRU/src/deeptools/test/test_plotCoverage.py:3: in 149s from matplotlib.testing.compare import compare_images 149s /usr/lib/python3/dist-packages/matplotlib/__init__.py:156: in 149s import numpy 149s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 149s raise ImportError(msg) from e 149s E ImportError: Error importing numpy: you should not try to import numpy from 149s E its source directory; please exit the numpy source tree, and relaunch 149s E your python interpreter from there. 149s ____________ ERROR collecting deeptools/test/test_readFiltering.py _____________ 149s ImportError while importing test module '/tmp/autopkgtest.I77mHM/build.aRU/src/deeptools/test/test_readFiltering.py'. 149s Hint: make sure your test modules/packages have valid Python names. 149s Traceback: 149s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 149s return _bootstrap._gcd_import(name[level:], package, level) 149s ../../build.aRU/src/deeptools/test/test_readFiltering.py:1: in 149s import deeptools.estimateReadFiltering as est 149s ../../build.aRU/src/deeptools/estimateReadFiltering.py:5: in 149s from deeptools import parserCommon, bamHandler, utilities 149s ../../build.aRU/src/deeptools/bamHandler.py:2: in 149s import pysam 149s /usr/lib/python3/dist-packages/pysam/__init__.py:4: in 149s from pysam.libchtslib import * 149s E ModuleNotFoundError: No module named 'pysam.libchtslib' 149s ____________ ERROR collecting deeptools/test/test_writeBedGraph.py _____________ 149s ImportError while importing test module '/tmp/autopkgtest.I77mHM/build.aRU/src/deeptools/test/test_writeBedGraph.py'. 149s Hint: make sure your test modules/packages have valid Python names. 149s Traceback: 149s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 149s from . import multiarray 149s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 149s from . import overrides 149s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 149s from numpy.core._multiarray_umath import ( 149s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 149s 149s During handling of the above exception, another exception occurred: 149s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 149s from numpy.__config__ import show as show_config 149s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 149s from numpy.core._multiarray_umath import ( 149s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 149s raise ImportError(msg) 149s E ImportError: 149s E 149s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 149s E 149s E Importing the numpy C-extensions failed. This error can happen for 149s E many reasons, often due to issues with your setup or how NumPy was 149s E installed. 149s E 149s E We have compiled some common reasons and troubleshooting tips at: 149s E 149s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 149s E 149s E Please note and check the following: 149s E 149s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 149s E * The NumPy version is: "1.26.4" 149s E 149s E and make sure that they are the versions you expect. 149s E Please carefully study the documentation linked above for further help. 149s E 149s E Original error was: No module named 'numpy.core._multiarray_umath' 149s 149s The above exception was the direct cause of the following exception: 149s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 149s return _bootstrap._gcd_import(name[level:], package, level) 149s ../../build.aRU/src/deeptools/test/test_writeBedGraph.py:3: in 149s import deeptools.writeBedGraph as wr 149s ../../build.aRU/src/deeptools/writeBedGraph.py:4: in 149s import numpy as np 149s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 149s raise ImportError(msg) from e 149s E ImportError: Error importing numpy: you should not try to import numpy from 149s E its source directory; please exit the numpy source tree, and relaunch 149s E your python interpreter from there. 149s =========================== short test summary info ============================ 149s ERROR ../../build.aRU/src/deeptools/test/test_bamCoverage_and_bamCompare.py 149s ERROR ../../build.aRU/src/deeptools/test/test_bigwigAverage.py 149s ERROR ../../build.aRU/src/deeptools/test/test_bigwigCompare_and_multiBigwigSummary.py 149s ERROR ../../build.aRU/src/deeptools/test/test_computeMatrixOperations.py 149s ERROR ../../build.aRU/src/deeptools/test/test_countReadsPerBin.py 149s ERROR ../../build.aRU/src/deeptools/test/test_heatmapper.py 149s ERROR ../../build.aRU/src/deeptools/test/test_multiBamSummary.py 149s ERROR ../../build.aRU/src/deeptools/test/test_plotCoverage.py 149s ERROR ../../build.aRU/src/deeptools/test/test_readFiltering.py 149s ERROR ../../build.aRU/src/deeptools/test/test_writeBedGraph.py 149s !!!!!!!!!!!!!!!!!!! Interrupted: 10 errors during collection !!!!!!!!!!!!!!!!!!! 149s ============================== 10 errors in 0.43s ============================== 149s E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=2: cd /tmp/autopkgtest.I77mHM/autopkgtest_tmp/build; python3.13 -m pytest -v /tmp/autopkgtest.I77mHM/build.aRU/src/deeptools/ 149s I: pybuild base:311: cd /tmp/autopkgtest.I77mHM/autopkgtest_tmp/build; python3.12 -m pytest -v /tmp/autopkgtest.I77mHM/build.aRU/src/deeptools/ 149s ============================= test session starts ============================== 149s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 149s cachedir: .pytest_cache 149s rootdir: /tmp/autopkgtest.I77mHM/build.aRU/src 149s configfile: pyproject.toml 149s plugins: typeguard-4.4.1 150s collecting ... collected 93 items / 1 error 150s 150s ==================================== ERRORS ==================================== 150s _ ERROR collecting deeptools/test/test_bigwigCompare_and_multiBigwigSummary.py _ 150s ImportError while importing test module '/tmp/autopkgtest.I77mHM/build.aRU/src/deeptools/test/test_bigwigCompare_and_multiBigwigSummary.py'. 150s Hint: make sure your test modules/packages have valid Python names. 150s Traceback: 150s /usr/lib/python3.12/importlib/__init__.py:90: in import_module 150s return _bootstrap._gcd_import(name[level:], package, level) 150s ../../build.aRU/src/deeptools/test/test_bigwigCompare_and_multiBigwigSummary.py:4: in 150s import numpy.testing as nt 150s /usr/lib/python3/dist-packages/numpy/testing/__init__.py:11: in 150s from ._private.utils import * 150s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:66: in 150s _v = sysconfig.get_config_var('HOST_GNU_TYPE') or '' 150s /usr/lib/python3.12/sysconfig.py:782: in get_config_var 150s return get_config_vars().get(name) 150s /usr/lib/python3.12/sysconfig.py:765: in get_config_vars 150s _init_config_vars() 150s /usr/lib/python3.12/sysconfig.py:706: in _init_config_vars 150s _init_posix(_CONFIG_VARS) 150s /usr/lib/python3.12/sysconfig.py:572: in _init_posix 150s _temp = __import__(name, globals(), locals(), ['build_time_vars'], 0) 150s E ModuleNotFoundError: No module named '_sysconfigdata__i386-linux-gnu' 150s =========================== short test summary info ============================ 150s ERROR ../../build.aRU/src/deeptools/test/test_bigwigCompare_and_multiBigwigSummary.py 150s !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection !!!!!!!!!!!!!!!!!!!! 150s =============================== 1 error in 0.79s =============================== 150s E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=2: cd /tmp/autopkgtest.I77mHM/autopkgtest_tmp/build; python3.12 -m pytest -v /tmp/autopkgtest.I77mHM/build.aRU/src/deeptools/ 150s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13 150s make: *** [/tmp/k9JOaG3312/run:4: pybuild-autopkgtest] Error 25 150s pybuild-autopkgtest: error: /tmp/k9JOaG3312/run pybuild-autopkgtest returned exit code 2 150s autopkgtest [13:18:15]: test pybuild-autopkgtest: -----------------------] 150s pybuild-autopkgtest FAIL non-zero exit status 25 150s autopkgtest [13:18:15]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 151s autopkgtest [13:18:16]: @@@@@@@@@@@@@@@@@@@@ summary 151s pybuild-autopkgtest FAIL non-zero exit status 25 163s nova [W] Skipping flock for amd64 163s Creating nova instance adt-plucky-i386-python-deeptools-20241113-131545-juju-7f2275-prod-proposed-migration-environment-20-81a89e67-6412-4fd8-b09b-4c1703633533 from image adt/ubuntu-plucky-amd64-server-20241113.img (UUID 62c21ac4-2290-4c8d-8313-dddd18eacff4)...