0s autopkgtest [23:10:35]: starting date and time: 2024-11-14 23:10:35+0000 0s autopkgtest [23:10:35]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [23:10:35]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0lwrv4q4/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-biopython --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-19.secgroup --name adt-plucky-i386-python-biopython-20241114-231035-juju-7f2275-prod-proposed-migration-environment-15-6c25b69c-3eda-42ee-99f4-706734e66b21 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 39s autopkgtest [23:11:14]: testbed dpkg architecture: amd64 39s autopkgtest [23:11:14]: testbed apt version: 2.9.8 39s autopkgtest [23:11:14]: test architecture: i386 39s autopkgtest [23:11:14]: @@@@@@@@@@@@@@@@@@@@ test bed setup 40s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 40s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 40s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [102 kB] 40s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1025 kB] 40s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 40s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [144 kB] 40s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [77.0 kB] 41s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 41s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [293 kB] 41s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [803 kB] 41s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 41s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9128 B] 41s Fetched 2583 kB in 1s (3176 kB/s) 41s Reading package lists... 43s Reading package lists... 43s Building dependency tree... 43s Reading state information... 43s Calculating upgrade... 43s The following NEW packages will be installed: 43s python3.13-gdbm 43s The following packages will be upgraded: 43s libcap-ng0 libpython3-stdlib pastebinit python3 python3-gdbm python3-minimal 43s python3-systemd 44s 7 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 44s Need to get 178 kB of archives. 44s After this operation, 256 kB of additional disk space will be used. 44s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 44s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 44s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 44s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-3build1 [15.6 kB] 44s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 44s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 44s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 44s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build5 [45.7 kB] 44s Fetched 178 kB in 0s (443 kB/s) 44s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 44s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 44s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 44s Setting up python3-minimal (3.12.7-1) ... 45s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 45s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 45s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 45s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 45s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 45s Preparing to unpack .../libcap-ng0_0.8.5-3build1_amd64.deb ... 45s Unpacking libcap-ng0:amd64 (0.8.5-3build1) over (0.8.5-1) ... 45s Setting up libcap-ng0:amd64 (0.8.5-3build1) ... 45s Selecting previously unselected package python3.13-gdbm. 45s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 45s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 45s Unpacking python3.13-gdbm (3.13.0-2) ... 45s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 45s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 45s Preparing to unpack .../pastebinit_1.7.1-1_all.deb ... 45s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 45s Preparing to unpack .../python3-systemd_235-1build5_amd64.deb ... 45s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 45s Setting up python3.13-gdbm (3.13.0-2) ... 45s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 45s Setting up python3 (3.12.7-1) ... 45s Setting up python3-systemd (235-1build5) ... 45s Setting up python3-gdbm:amd64 (3.12.7-1) ... 45s Setting up pastebinit (1.7.1-1) ... 45s Processing triggers for libc-bin (2.40-1ubuntu3) ... 45s Processing triggers for man-db (2.12.1-3) ... 46s Reading package lists... 46s Building dependency tree... 46s Reading state information... 46s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 47s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 47s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 47s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 47s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 47s Reading package lists... 47s Reading package lists... 48s Building dependency tree... 48s Reading state information... 48s Calculating upgrade... 48s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 48s Reading package lists... 48s Building dependency tree... 48s Reading state information... 48s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 51s autopkgtest [23:11:26]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 51s autopkgtest [23:11:26]: @@@@@@@@@@@@@@@@@@@@ apt-source python-biopython 54s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-biopython 1.84+dfsg-4 (dsc) [3543 B] 54s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-biopython 1.84+dfsg-4 (tar) [14.6 MB] 54s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-biopython 1.84+dfsg-4 (diff) [42.8 kB] 54s gpgv: Signature made Wed Oct 30 21:23:04 2024 UTC 54s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 54s gpgv: issuer "emollier@debian.org" 54s gpgv: Can't check signature: No public key 54s dpkg-source: warning: cannot verify inline signature for ./python-biopython_1.84+dfsg-4.dsc: no acceptable signature found 55s autopkgtest [23:11:30]: testing package python-biopython version 1.84+dfsg-4 56s autopkgtest [23:11:31]: build not needed 60s autopkgtest [23:11:35]: test dependencies: preparing testbed 62s dependencies FAIL badpkg 62s blame: python-biopython 62s badpkg: Can't resolve build dependencies on testbed 62s autopkgtest [23:11:37]: ERROR: Failed to resolve build-deps for /tmp/autopkgtest.zWlOoH/1-autopkgtest-satdep.dsc; apt-get --simulate output: 62s autopkgtest [23:11:37]: ERROR: | Note, using file '/tmp/autopkgtest.zWlOoH/1-autopkgtest-satdep.dsc' to get the build dependencies 62s autopkgtest [23:11:37]: ERROR: | Reading package lists... 62s autopkgtest [23:11:37]: ERROR: | Building dependency tree... 62s autopkgtest [23:11:37]: ERROR: | Reading state information... 62s autopkgtest [23:11:37]: ERROR: | Some packages could not be installed. This may mean that you have 62s autopkgtest [23:11:37]: ERROR: | requested an impossible situation or if you are using the unstable 62s autopkgtest [23:11:37]: ERROR: | distribution that some required packages have not yet been created 62s autopkgtest [23:11:37]: ERROR: | or been moved out of Incoming. 62s autopkgtest [23:11:37]: ERROR: | The following information may help to resolve the situation: 62s autopkgtest [23:11:37]: ERROR: | 62s autopkgtest [23:11:37]: ERROR: | The following packages have unmet dependencies: 62s autopkgtest [23:11:37]: ERROR: | builddeps:/tmp/autopkgtest.zWlOoH/1-autopkgtest-satdep.dsc : Depends: python3-biopython:i386 but it is not installable 62s autopkgtest [23:11:37]: ERROR: | E: Unable to correct problems, you have held broken packages. 62s autopkgtest [23:11:37]: test full_suite: preparing testbed 415s autopkgtest [23:17:30]: testbed dpkg architecture: amd64 415s autopkgtest [23:17:30]: testbed apt version: 2.9.8 415s autopkgtest [23:17:30]: test architecture: i386 415s autopkgtest [23:17:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 416s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 416s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [102 kB] 417s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 417s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1025 kB] 417s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 417s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [77.0 kB] 417s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [144 kB] 417s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 417s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [803 kB] 417s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [293 kB] 417s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9128 B] 417s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 417s Fetched 2583 kB in 1s (3101 kB/s) 417s Reading package lists... 419s Reading package lists... 419s Building dependency tree... 419s Reading state information... 420s Calculating upgrade... 420s The following NEW packages will be installed: 420s python3.13-gdbm 420s The following packages will be upgraded: 420s libcap-ng0 libpython3-stdlib pastebinit python3 python3-gdbm python3-minimal 420s python3-systemd 420s 7 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 420s Need to get 178 kB of archives. 420s After this operation, 256 kB of additional disk space will be used. 420s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 420s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 420s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 420s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-3build1 [15.6 kB] 420s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 420s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 420s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 420s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build5 [45.7 kB] 420s Fetched 178 kB in 0s (402 kB/s) 421s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 421s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 421s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 421s Setting up python3-minimal (3.12.7-1) ... 421s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 421s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 421s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 421s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 421s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 421s Preparing to unpack .../libcap-ng0_0.8.5-3build1_amd64.deb ... 421s Unpacking libcap-ng0:amd64 (0.8.5-3build1) over (0.8.5-1) ... 421s Setting up libcap-ng0:amd64 (0.8.5-3build1) ... 421s Selecting previously unselected package python3.13-gdbm. 421s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 421s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 421s Unpacking python3.13-gdbm (3.13.0-2) ... 421s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 421s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 421s Preparing to unpack .../pastebinit_1.7.1-1_all.deb ... 421s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 421s Preparing to unpack .../python3-systemd_235-1build5_amd64.deb ... 421s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 421s Setting up python3.13-gdbm (3.13.0-2) ... 421s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 421s Setting up python3 (3.12.7-1) ... 421s Setting up python3-systemd (235-1build5) ... 422s Setting up python3-gdbm:amd64 (3.12.7-1) ... 422s Setting up pastebinit (1.7.1-1) ... 422s Processing triggers for libc-bin (2.40-1ubuntu3) ... 422s Processing triggers for man-db (2.12.1-3) ... 422s Reading package lists... 422s Building dependency tree... 422s Reading state information... 423s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 423s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 423s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 423s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 423s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 424s Reading package lists... 424s Reading package lists... 424s Building dependency tree... 424s Reading state information... 424s Calculating upgrade... 424s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 425s Reading package lists... 425s Building dependency tree... 425s Reading state information... 425s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 430s full_suite SKIP installation fails and skip-not-installable set 430s autopkgtest [23:17:45]: ERROR: Failed to resolve build-deps for /tmp/autopkgtest.zWlOoH/2-autopkgtest-satdep.dsc; apt-get --simulate output: 430s autopkgtest [23:17:45]: ERROR: | Note, using file '/tmp/autopkgtest.zWlOoH/2-autopkgtest-satdep.dsc' to get the build dependencies 430s autopkgtest [23:17:45]: ERROR: | Reading package lists... 430s autopkgtest [23:17:45]: ERROR: | Building dependency tree... 430s autopkgtest [23:17:45]: ERROR: | Reading state information... 430s autopkgtest [23:17:45]: ERROR: | Some packages could not be installed. This may mean that you have 430s autopkgtest [23:17:45]: ERROR: | requested an impossible situation or if you are using the unstable 430s autopkgtest [23:17:45]: ERROR: | distribution that some required packages have not yet been created 430s autopkgtest [23:17:45]: ERROR: | or been moved out of Incoming. 430s autopkgtest [23:17:45]: ERROR: | The following information may help to resolve the situation: 430s autopkgtest [23:17:45]: ERROR: | 430s autopkgtest [23:17:45]: ERROR: | The following packages have unmet dependencies: 430s autopkgtest [23:17:45]: ERROR: | builddeps:/tmp/autopkgtest.zWlOoH/2-autopkgtest-satdep.dsc : Depends: python3-biopython:i386 but it is not installable 430s autopkgtest [23:17:45]: ERROR: | E: Unable to correct problems, you have held broken packages. 430s autopkgtest [23:17:45]: @@@@@@@@@@@@@@@@@@@@ summary 430s dependencies FAIL badpkg 430s blame: python-biopython 430s badpkg: Can't resolve build dependencies on testbed 430s full_suite SKIP installation fails and skip-not-installable set 441s nova [W] Skipping flock for amd64 441s Creating nova instance adt-plucky-i386-python-biopython-20241114-231035-juju-7f2275-prod-proposed-migration-environment-15-6c25b69c-3eda-42ee-99f4-706734e66b21 from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)... 441s nova [W] Skipping flock for amd64 441s Creating nova instance adt-plucky-i386-python-biopython-20241114-231035-juju-7f2275-prod-proposed-migration-environment-15-6c25b69c-3eda-42ee-99f4-706734e66b21 from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)... 441s nova [W] nova quota exceeded (attempt #0)