0s autopkgtest [23:10:34]: starting date and time: 2024-11-14 23:10:34+0000 0s autopkgtest [23:10:34]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [23:10:34]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.u9m7_rfx/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-bioframe --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-11.secgroup --name adt-plucky-i386-python-bioframe-20241114-231034-juju-7f2275-prod-proposed-migration-environment-15-023abef4-363e-4bbc-a6d9-ed5c441c2b51 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 43s autopkgtest [23:11:17]: testbed dpkg architecture: amd64 43s autopkgtest [23:11:17]: testbed apt version: 2.9.8 43s autopkgtest [23:11:17]: test architecture: i386 43s autopkgtest [23:11:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 44s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 44s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1025 kB] 45s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [102 kB] 45s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 45s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 45s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [144 kB] 45s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [77.0 kB] 45s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 45s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [293 kB] 45s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [803 kB] 45s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9128 B] 45s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 45s Fetched 2583 kB in 1s (3262 kB/s) 45s Reading package lists... 47s Reading package lists... 47s Building dependency tree... 47s Reading state information... 47s Calculating upgrade... 48s The following NEW packages will be installed: 48s python3.13-gdbm 48s The following packages will be upgraded: 48s libcap-ng0 libpython3-stdlib pastebinit python3 python3-gdbm python3-minimal 48s python3-systemd 48s 7 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 48s Need to get 178 kB of archives. 48s After this operation, 256 kB of additional disk space will be used. 48s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 48s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 48s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 48s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-3build1 [15.6 kB] 48s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 48s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 48s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 48s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build5 [45.7 kB] 48s Fetched 178 kB in 0s (429 kB/s) 48s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 48s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 48s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 48s Setting up python3-minimal (3.12.7-1) ... 49s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 49s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 49s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 49s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 49s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 49s Preparing to unpack .../libcap-ng0_0.8.5-3build1_amd64.deb ... 49s Unpacking libcap-ng0:amd64 (0.8.5-3build1) over (0.8.5-1) ... 49s Setting up libcap-ng0:amd64 (0.8.5-3build1) ... 49s Selecting previously unselected package python3.13-gdbm. 49s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 49s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 49s Unpacking python3.13-gdbm (3.13.0-2) ... 49s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 49s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 49s Preparing to unpack .../pastebinit_1.7.1-1_all.deb ... 49s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 49s Preparing to unpack .../python3-systemd_235-1build5_amd64.deb ... 49s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 49s Setting up python3.13-gdbm (3.13.0-2) ... 49s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 49s Setting up python3 (3.12.7-1) ... 49s Setting up python3-systemd (235-1build5) ... 49s Setting up python3-gdbm:amd64 (3.12.7-1) ... 49s Setting up pastebinit (1.7.1-1) ... 49s Processing triggers for libc-bin (2.40-1ubuntu3) ... 49s Processing triggers for man-db (2.12.1-3) ... 50s Reading package lists... 50s Building dependency tree... 50s Reading state information... 50s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 51s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 51s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 51s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 51s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 52s Reading package lists... 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 52s Calculating upgrade... 52s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 52s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s autopkgtest [23:11:29]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 55s autopkgtest [23:11:29]: @@@@@@@@@@@@@@@@@@@@ apt-source python-bioframe 57s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-bioframe 0.4.1-1 (dsc) [1611 B] 57s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-bioframe 0.4.1-1 (tar) [816 kB] 57s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-bioframe 0.4.1-1 (diff) [3464 B] 57s gpgv: Signature made Mon Jun 12 17:55:46 2023 UTC 57s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 57s gpgv: Can't check signature: No public key 57s dpkg-source: warning: cannot verify inline signature for ./python-bioframe_0.4.1-1.dsc: no acceptable signature found 57s autopkgtest [23:11:31]: testing package python-bioframe version 0.4.1-1 57s autopkgtest [23:11:31]: build not needed 58s autopkgtest [23:11:32]: test run-unit-test: preparing testbed 60s Note, using file '/tmp/autopkgtest.700QTy/1-autopkgtest-satdep.dsc' to get the build dependencies 60s Reading package lists... 60s Building dependency tree... 60s Reading state information... 60s Starting pkgProblemResolver with broken count: 0 60s Starting 2 pkgProblemResolver with broken count: 0 60s Done 61s The following NEW packages will be installed: 61s blt build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 61s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx g++ g++-14 61s g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 61s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu libasan8 libblas3 libcc1-0 61s libdeflate0 libfontconfig1 libgcc-14-dev libgfortran5 libgomp1 61s libgraphite2-3 libharfbuzz0b libhwasan0 libimagequant0 libisl23 libitm1 61s libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 61s liblbfgsb0 liblcms2-2 liblerc4 liblsan0 libmpc3 libopenjp2-7 61s libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libquadmath0 61s libraqm0 libsharpyuv0 libstdc++-14-dev libtcl8.6 libtiff6 libtk8.6 libtsan2 61s libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 61s libxss1 python-matplotlib-data python3-all python3-appdirs python3-bioframe 61s python3-brotli python3-contourpy python3-cycler python3-dateutil 61s python3-decorator python3-fonttools python3-fs python3-iniconfig 61s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 61s python3-mpmath python3-numpy python3-packaging python3-pandas 61s python3-pandas-lib python3-pil python3-pil.imagetk python3-pluggy 61s python3-pytest python3-scipy python3-six python3-sympy python3-tk python3-tz 61s python3-ufolib2 python3-unicodedata2 python3.12-tk python3.13 61s python3.13-minimal python3.13-tk tk8.6-blt2.5 unicode-data x11-common 61s 0 upgraded, 102 newly installed, 0 to remove and 0 not upgraded. 61s Need to get 139 MB of archives. 61s After this operation, 545 MB of additional disk space will be used. 61s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 61s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 62s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1085 kB] 62s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 62s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 62s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 62s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 62s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 62s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 62s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 62s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 62s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.15-1 [862 kB] 62s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 62s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 62s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 62s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 62s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 62s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 62s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 62s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 62s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 62s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 62s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 62s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 62s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 62s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 62s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 62s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 63s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 63s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 63s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 64s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 64s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 64s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 64s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 64s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 64s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 64s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 64s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 64s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 64s Get:41 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.2.1-1 [171 kB] 64s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 64s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 64s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 64s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 64s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 64s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 64s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 64s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 64s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 64s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 64s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 64s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 64s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 64s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 64s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 64s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 64s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 64s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 64s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 64s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 64s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 64s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 64s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 64s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu1 [169 kB] 65s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-3 [2928 kB] 65s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 65s Get:68 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 65s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 65s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 65s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 65s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 65s Get:73 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 10.4.0-1ubuntu1 [463 kB] 65s Get:74 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.7-3 [116 kB] 65s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-tk amd64 3.13.0-2 [106 kB] 65s Get:76 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-tk amd64 3.12.7-1 [9752 B] 65s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 10.4.0-1ubuntu1 [9394 B] 65s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 65s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.0-2 [217 kB] 65s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 65s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 65s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 65s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 66s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 66s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 66s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 66s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB] 66s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 66s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.0-1 [1282 kB] 66s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 66s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build2 [360 kB] 66s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 66s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 66s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-2build1 [70.3 kB] 66s Get:95 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 66s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-3 [4545 kB] 66s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [5087 kB] 67s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 67s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-bioframe all 0.4.1-1 [76.1 kB] 67s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 67s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 67s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 67s Fetched 139 MB in 6s (22.5 MB/s) 67s Selecting previously unselected package libpython3.13-minimal:amd64. 67s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75554 files and directories currently installed.) 67s Preparing to unpack .../000-libpython3.13-minimal_3.13.0-2_amd64.deb ... 67s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 68s Selecting previously unselected package python3.13-minimal. 68s Preparing to unpack .../001-python3.13-minimal_3.13.0-2_amd64.deb ... 68s Unpacking python3.13-minimal (3.13.0-2) ... 68s Selecting previously unselected package libtcl8.6:amd64. 68s Preparing to unpack .../002-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... 68s Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... 68s Selecting previously unselected package fonts-dejavu-mono. 68s Preparing to unpack .../003-fonts-dejavu-mono_2.37-8_all.deb ... 68s Unpacking fonts-dejavu-mono (2.37-8) ... 68s Selecting previously unselected package fonts-dejavu-core. 68s Preparing to unpack .../004-fonts-dejavu-core_2.37-8_all.deb ... 68s Unpacking fonts-dejavu-core (2.37-8) ... 68s Selecting previously unselected package fontconfig-config. 68s Preparing to unpack .../005-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 68s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 68s Selecting previously unselected package libfontconfig1:amd64. 68s Preparing to unpack .../006-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 68s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 68s Selecting previously unselected package libxrender1:amd64. 68s Preparing to unpack .../007-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 68s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 68s Selecting previously unselected package libxft2:amd64. 68s Preparing to unpack .../008-libxft2_2.3.6-1build1_amd64.deb ... 68s Unpacking libxft2:amd64 (2.3.6-1build1) ... 68s Selecting previously unselected package x11-common. 68s Preparing to unpack .../009-x11-common_1%3a7.7+23ubuntu3_all.deb ... 68s Unpacking x11-common (1:7.7+23ubuntu3) ... 68s Selecting previously unselected package libxss1:amd64. 68s Preparing to unpack .../010-libxss1_1%3a1.2.3-1build3_amd64.deb ... 68s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 68s Selecting previously unselected package libtk8.6:amd64. 68s Preparing to unpack .../011-libtk8.6_8.6.15-1_amd64.deb ... 68s Unpacking libtk8.6:amd64 (8.6.15-1) ... 68s Selecting previously unselected package tk8.6-blt2.5. 68s Preparing to unpack .../012-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 68s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 68s Selecting previously unselected package blt. 68s Preparing to unpack .../013-blt_2.5.3+dfsg-7build1_amd64.deb ... 68s Unpacking blt (2.5.3+dfsg-7build1) ... 68s Selecting previously unselected package libisl23:amd64. 68s Preparing to unpack .../014-libisl23_0.27-1_amd64.deb ... 68s Unpacking libisl23:amd64 (0.27-1) ... 68s Selecting previously unselected package libmpc3:amd64. 68s Preparing to unpack .../015-libmpc3_1.3.1-1build2_amd64.deb ... 68s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 68s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 68s Preparing to unpack .../016-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 68s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 68s Selecting previously unselected package cpp-14. 68s Preparing to unpack .../017-cpp-14_14.2.0-8ubuntu1_amd64.deb ... 68s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 68s Selecting previously unselected package cpp-x86-64-linux-gnu. 68s Preparing to unpack .../018-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 68s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 69s Selecting previously unselected package cpp. 69s Preparing to unpack .../019-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 69s Unpacking cpp (4:14.1.0-2ubuntu1) ... 69s Selecting previously unselected package libcc1-0:amd64. 69s Preparing to unpack .../020-libcc1-0_14.2.0-8ubuntu1_amd64.deb ... 69s Unpacking libcc1-0:amd64 (14.2.0-8ubuntu1) ... 69s Selecting previously unselected package libgomp1:amd64. 69s Preparing to unpack .../021-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 69s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 69s Selecting previously unselected package libitm1:amd64. 69s Preparing to unpack .../022-libitm1_14.2.0-8ubuntu1_amd64.deb ... 69s Unpacking libitm1:amd64 (14.2.0-8ubuntu1) ... 69s Selecting previously unselected package libasan8:amd64. 69s Preparing to unpack .../023-libasan8_14.2.0-8ubuntu1_amd64.deb ... 69s Unpacking libasan8:amd64 (14.2.0-8ubuntu1) ... 69s Selecting previously unselected package liblsan0:amd64. 69s Preparing to unpack .../024-liblsan0_14.2.0-8ubuntu1_amd64.deb ... 69s Unpacking liblsan0:amd64 (14.2.0-8ubuntu1) ... 69s Selecting previously unselected package libtsan2:amd64. 69s Preparing to unpack .../025-libtsan2_14.2.0-8ubuntu1_amd64.deb ... 69s Unpacking libtsan2:amd64 (14.2.0-8ubuntu1) ... 69s Selecting previously unselected package libubsan1:amd64. 69s Preparing to unpack .../026-libubsan1_14.2.0-8ubuntu1_amd64.deb ... 69s Unpacking libubsan1:amd64 (14.2.0-8ubuntu1) ... 69s Selecting previously unselected package libhwasan0:amd64. 69s Preparing to unpack .../027-libhwasan0_14.2.0-8ubuntu1_amd64.deb ... 69s Unpacking libhwasan0:amd64 (14.2.0-8ubuntu1) ... 69s Selecting previously unselected package libquadmath0:amd64. 69s Preparing to unpack .../028-libquadmath0_14.2.0-8ubuntu1_amd64.deb ... 69s Unpacking libquadmath0:amd64 (14.2.0-8ubuntu1) ... 69s Selecting previously unselected package libgcc-14-dev:amd64. 69s Preparing to unpack .../029-libgcc-14-dev_14.2.0-8ubuntu1_amd64.deb ... 69s Unpacking libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 69s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 69s Preparing to unpack .../030-gcc-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 69s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 69s Selecting previously unselected package gcc-14. 69s Preparing to unpack .../031-gcc-14_14.2.0-8ubuntu1_amd64.deb ... 69s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 69s Selecting previously unselected package gcc-x86-64-linux-gnu. 69s Preparing to unpack .../032-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 69s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 69s Selecting previously unselected package gcc. 69s Preparing to unpack .../033-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 69s Unpacking gcc (4:14.1.0-2ubuntu1) ... 69s Selecting previously unselected package libstdc++-14-dev:amd64. 69s Preparing to unpack .../034-libstdc++-14-dev_14.2.0-8ubuntu1_amd64.deb ... 69s Unpacking libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 69s Selecting previously unselected package g++-14-x86-64-linux-gnu. 69s Preparing to unpack .../035-g++-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 69s Unpacking g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 70s Selecting previously unselected package g++-14. 70s Preparing to unpack .../036-g++-14_14.2.0-8ubuntu1_amd64.deb ... 70s Unpacking g++-14 (14.2.0-8ubuntu1) ... 70s Selecting previously unselected package g++-x86-64-linux-gnu. 70s Preparing to unpack .../037-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 70s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 70s Selecting previously unselected package g++. 70s Preparing to unpack .../038-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 70s Unpacking g++ (4:14.1.0-2ubuntu1) ... 70s Selecting previously unselected package build-essential. 70s Preparing to unpack .../039-build-essential_12.10ubuntu1_amd64.deb ... 70s Unpacking build-essential (12.10ubuntu1) ... 70s Selecting previously unselected package fonts-lyx. 70s Preparing to unpack .../040-fonts-lyx_2.4.2.1-1_all.deb ... 70s Unpacking fonts-lyx (2.4.2.1-1) ... 70s Selecting previously unselected package libblas3:amd64. 70s Preparing to unpack .../041-libblas3_3.12.0-3build2_amd64.deb ... 70s Unpacking libblas3:amd64 (3.12.0-3build2) ... 70s Selecting previously unselected package libdeflate0:amd64. 70s Preparing to unpack .../042-libdeflate0_1.22-1_amd64.deb ... 70s Unpacking libdeflate0:amd64 (1.22-1) ... 70s Selecting previously unselected package libgfortran5:amd64. 70s Preparing to unpack .../043-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 70s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 70s Selecting previously unselected package libgraphite2-3:amd64. 70s Preparing to unpack .../044-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 70s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 70s Selecting previously unselected package libharfbuzz0b:amd64. 70s Preparing to unpack .../045-libharfbuzz0b_10.0.1-1_amd64.deb ... 70s Unpacking libharfbuzz0b:amd64 (10.0.1-1) ... 70s Selecting previously unselected package libimagequant0:amd64. 70s Preparing to unpack .../046-libimagequant0_2.18.0-1build1_amd64.deb ... 70s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 70s Selecting previously unselected package libjpeg-turbo8:amd64. 70s Preparing to unpack .../047-libjpeg-turbo8_2.1.5-2ubuntu2_amd64.deb ... 70s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 70s Selecting previously unselected package libjpeg8:amd64. 70s Preparing to unpack .../048-libjpeg8_8c-2ubuntu11_amd64.deb ... 70s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 70s Selecting previously unselected package libjs-jquery. 70s Preparing to unpack .../049-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 70s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 70s Selecting previously unselected package libjs-jquery-ui. 70s Preparing to unpack .../050-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 70s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 70s Selecting previously unselected package liblapack3:amd64. 70s Preparing to unpack .../051-liblapack3_3.12.0-3build2_amd64.deb ... 70s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 70s Selecting previously unselected package liblbfgsb0:amd64. 70s Preparing to unpack .../052-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 70s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 70s Selecting previously unselected package liblcms2-2:amd64. 70s Preparing to unpack .../053-liblcms2-2_2.16-2_amd64.deb ... 70s Unpacking liblcms2-2:amd64 (2.16-2) ... 70s Selecting previously unselected package liblerc4:amd64. 70s Preparing to unpack .../054-liblerc4_4.0.0+ds-4ubuntu2_amd64.deb ... 70s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu2) ... 70s Selecting previously unselected package libpython3.13-stdlib:amd64. 70s Preparing to unpack .../055-libpython3.13-stdlib_3.13.0-2_amd64.deb ... 70s Unpacking libpython3.13-stdlib:amd64 (3.13.0-2) ... 70s Selecting previously unselected package libqhull-r8.0:amd64. 70s Preparing to unpack .../056-libqhull-r8.0_2020.2-6build1_amd64.deb ... 70s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 70s Selecting previously unselected package libraqm0:amd64. 70s Preparing to unpack .../057-libraqm0_0.10.1-1build1_amd64.deb ... 70s Unpacking libraqm0:amd64 (0.10.1-1build1) ... 70s Selecting previously unselected package libsharpyuv0:amd64. 70s Preparing to unpack .../058-libsharpyuv0_1.4.0-0.1_amd64.deb ... 70s Unpacking libsharpyuv0:amd64 (1.4.0-0.1) ... 70s Selecting previously unselected package libjbig0:amd64. 70s Preparing to unpack .../059-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 70s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 70s Selecting previously unselected package libwebp7:amd64. 70s Preparing to unpack .../060-libwebp7_1.4.0-0.1_amd64.deb ... 70s Unpacking libwebp7:amd64 (1.4.0-0.1) ... 70s Selecting previously unselected package libtiff6:amd64. 70s Preparing to unpack .../061-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 70s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 70s Selecting previously unselected package libwebpdemux2:amd64. 70s Preparing to unpack .../062-libwebpdemux2_1.4.0-0.1_amd64.deb ... 70s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... 70s Selecting previously unselected package libwebpmux3:amd64. 70s Preparing to unpack .../063-libwebpmux3_1.4.0-0.1_amd64.deb ... 70s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... 70s Selecting previously unselected package libxslt1.1:amd64. 70s Preparing to unpack .../064-libxslt1.1_1.1.39-0exp1ubuntu1_amd64.deb ... 70s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu1) ... 70s Selecting previously unselected package python-matplotlib-data. 70s Preparing to unpack .../065-python-matplotlib-data_3.8.3-3_all.deb ... 70s Unpacking python-matplotlib-data (3.8.3-3) ... 70s Selecting previously unselected package python3.13. 70s Preparing to unpack .../066-python3.13_3.13.0-2_amd64.deb ... 70s Unpacking python3.13 (3.13.0-2) ... 70s Selecting previously unselected package python3-all. 70s Preparing to unpack .../067-python3-all_3.12.7-1_amd64.deb ... 70s Unpacking python3-all (3.12.7-1) ... 70s Selecting previously unselected package python3-appdirs. 70s Preparing to unpack .../068-python3-appdirs_1.4.4-4_all.deb ... 70s Unpacking python3-appdirs (1.4.4-4) ... 70s Selecting previously unselected package python3-six. 70s Preparing to unpack .../069-python3-six_1.16.0-7_all.deb ... 70s Unpacking python3-six (1.16.0-7) ... 71s Selecting previously unselected package python3-dateutil. 71s Preparing to unpack .../070-python3-dateutil_2.9.0-2_all.deb ... 71s Unpacking python3-dateutil (2.9.0-2) ... 71s Selecting previously unselected package libopenjp2-7:amd64. 71s Preparing to unpack .../071-libopenjp2-7_2.5.0-2ubuntu1_amd64.deb ... 71s Unpacking libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 71s Selecting previously unselected package python3-pil:amd64. 71s Preparing to unpack .../072-python3-pil_10.4.0-1ubuntu1_amd64.deb ... 71s Unpacking python3-pil:amd64 (10.4.0-1ubuntu1) ... 71s Selecting previously unselected package python3.12-tk. 71s Preparing to unpack .../073-python3.12-tk_3.12.7-3_amd64.deb ... 71s Unpacking python3.12-tk (3.12.7-3) ... 71s Selecting previously unselected package python3.13-tk. 71s Preparing to unpack .../074-python3.13-tk_3.13.0-2_amd64.deb ... 71s Unpacking python3.13-tk (3.13.0-2) ... 71s Selecting previously unselected package python3-tk:amd64. 71s Preparing to unpack .../075-python3-tk_3.12.7-1_amd64.deb ... 71s Unpacking python3-tk:amd64 (3.12.7-1) ... 71s Selecting previously unselected package python3-pil.imagetk:amd64. 71s Preparing to unpack .../076-python3-pil.imagetk_10.4.0-1ubuntu1_amd64.deb ... 71s Unpacking python3-pil.imagetk:amd64 (10.4.0-1ubuntu1) ... 71s Selecting previously unselected package python3-numpy. 71s Preparing to unpack .../077-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 71s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 71s Selecting previously unselected package python3-contourpy. 71s Preparing to unpack .../078-python3-contourpy_1.3.0-2_amd64.deb ... 71s Unpacking python3-contourpy (1.3.0-2) ... 71s Selecting previously unselected package python3-cycler. 71s Preparing to unpack .../079-python3-cycler_0.12.1-1_all.deb ... 71s Unpacking python3-cycler (0.12.1-1) ... 71s Selecting previously unselected package python3-brotli. 71s Preparing to unpack .../080-python3-brotli_1.1.0-2build2_amd64.deb ... 71s Unpacking python3-brotli (1.1.0-2build2) ... 71s Selecting previously unselected package python3-decorator. 71s Preparing to unpack .../081-python3-decorator_5.1.1-5_all.deb ... 71s Unpacking python3-decorator (5.1.1-5) ... 71s Selecting previously unselected package python3-scipy. 71s Preparing to unpack .../082-python3-scipy_1.13.1-5_amd64.deb ... 71s Unpacking python3-scipy (1.13.1-5) ... 71s Selecting previously unselected package python3-ufolib2. 71s Preparing to unpack .../083-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 71s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 71s Selecting previously unselected package python3-mpmath. 71s Preparing to unpack .../084-python3-mpmath_1.3.0-1_all.deb ... 71s Unpacking python3-mpmath (1.3.0-1) ... 71s Selecting previously unselected package python3-sympy. 71s Preparing to unpack .../085-python3-sympy_1.13.3-1_all.deb ... 71s Unpacking python3-sympy (1.13.3-1) ... 72s Selecting previously unselected package python3-tz. 72s Preparing to unpack .../086-python3-tz_2024.1-2_all.deb ... 72s Unpacking python3-tz (2024.1-2) ... 72s Selecting previously unselected package python3-fs. 72s Preparing to unpack .../087-python3-fs_2.4.16-4_all.deb ... 72s Unpacking python3-fs (2.4.16-4) ... 72s Selecting previously unselected package python3-lxml:amd64. 72s Preparing to unpack .../088-python3-lxml_5.3.0-1_amd64.deb ... 72s Unpacking python3-lxml:amd64 (5.3.0-1) ... 72s Selecting previously unselected package python3-lz4. 72s Preparing to unpack .../089-python3-lz4_4.0.2+dfsg-1build4_amd64.deb ... 72s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 72s Selecting previously unselected package python3-unicodedata2. 72s Preparing to unpack .../090-python3-unicodedata2_15.1.0+ds-1build2_amd64.deb ... 72s Unpacking python3-unicodedata2 (15.1.0+ds-1build2) ... 72s Selecting previously unselected package unicode-data. 72s Preparing to unpack .../091-unicode-data_15.1.0-1_all.deb ... 72s Unpacking unicode-data (15.1.0-1) ... 72s Selecting previously unselected package python3-fonttools. 72s Preparing to unpack .../092-python3-fonttools_4.46.0-1build2_amd64.deb ... 72s Unpacking python3-fonttools (4.46.0-1build2) ... 72s Selecting previously unselected package python3-kiwisolver. 72s Preparing to unpack .../093-python3-kiwisolver_1.4.7-2build1_amd64.deb ... 72s Unpacking python3-kiwisolver (1.4.7-2build1) ... 72s Selecting previously unselected package python3-packaging. 72s Preparing to unpack .../094-python3-packaging_24.1-1_all.deb ... 72s Unpacking python3-packaging (24.1-1) ... 72s Selecting previously unselected package python3-matplotlib. 72s Preparing to unpack .../095-python3-matplotlib_3.8.3-3_amd64.deb ... 72s Unpacking python3-matplotlib (3.8.3-3) ... 72s Selecting previously unselected package python3-pandas-lib:amd64. 72s Preparing to unpack .../096-python3-pandas-lib_2.2.3+dfsg-5_amd64.deb ... 72s Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... 72s Selecting previously unselected package python3-pandas. 72s Preparing to unpack .../097-python3-pandas_2.2.3+dfsg-5_all.deb ... 72s Unpacking python3-pandas (2.2.3+dfsg-5) ... 73s Selecting previously unselected package python3-bioframe. 73s Preparing to unpack .../098-python3-bioframe_0.4.1-1_all.deb ... 73s Unpacking python3-bioframe (0.4.1-1) ... 73s Selecting previously unselected package python3-iniconfig. 73s Preparing to unpack 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python-matplotlib-data (3.8.3-3) ... 76s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 76s Setting up python3-appdirs (1.4.4-4) ... 76s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 76s Setting up libcc1-0:amd64 (14.2.0-8ubuntu1) ... 76s Setting up liblsan0:amd64 (14.2.0-8ubuntu1) ... 76s Setting up libitm1:amd64 (14.2.0-8ubuntu1) ... 76s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 76s Setting up python3-sympy (1.13.3-1) ... 85s Setting up liblapack3:amd64 (3.12.0-3build2) ... 85s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 85s Setting up python3.13 (3.13.0-2) ... 86s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 86s Setting up python3-pytest (8.3.3-1) ... 87s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 87s Setting up python3-all (3.12.7-1) ... 87s Setting up python3-fs (2.4.16-4) ... 87s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 87s Setting up libraqm0:amd64 (0.10.1-1build1) ... 87s Setting up cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 87s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 90s Setting up cpp-14 (14.2.0-8ubuntu1) ... 90s Setting up python3-lxml:amd64 (5.3.0-1) ... 90s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 90s Setting up python3-contourpy (1.3.0-2) ... 90s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 90s Setting up libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 90s Setting up libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 90s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 90s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 90s Setting up libxft2:amd64 (2.3.6-1build1) ... 90s Setting up python3-scipy (1.13.1-5) ... 95s Setting up libtk8.6:amd64 (8.6.15-1) ... 95s Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... 95s Setting up python3.12-tk (3.12.7-3) ... 95s Setting up python3.13-tk (3.13.0-2) ... 95s Setting up python3-pil:amd64 (10.4.0-1ubuntu1) ... 96s Setting up python3-pandas (2.2.3+dfsg-5) ... 103s Setting up cpp (4:14.1.0-2ubuntu1) ... 103s Setting up gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 103s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 103s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 103s Setting up blt (2.5.3+dfsg-7build1) ... 103s Setting up python3-tk:amd64 (3.12.7-1) ... 103s Setting up gcc-14 (14.2.0-8ubuntu1) ... 103s Setting up python3-pil.imagetk:amd64 (10.4.0-1ubuntu1) ... 104s Setting up g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 104s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 104s Setting up g++-14 (14.2.0-8ubuntu1) ... 104s Setting up gcc (4:14.1.0-2ubuntu1) ... 104s Setting up g++ (4:14.1.0-2ubuntu1) ... 104s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 104s Setting up build-essential (12.10ubuntu1) ... 104s Setting up python3-fonttools (4.46.0-1build2) ... 105s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 105s Setting up python3-matplotlib (3.8.3-3) ... 107s Setting up python3-bioframe (0.4.1-1) ... 107s Processing triggers for libc-bin (2.40-1ubuntu3) ... 107s Processing triggers for systemd (256.5-2ubuntu4) ... 107s Processing triggers for man-db (2.12.1-3) ... 109s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s Starting pkgProblemResolver with broken count: 0 110s Starting 2 pkgProblemResolver with broken count: 0 110s Done 110s The following NEW packages will be installed: 110s autopkgtest-satdep 110s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 110s Need to get 0 B/700 B of archives. 110s After this operation, 0 B of additional disk space will be used. 110s Get:1 /tmp/autopkgtest.700QTy/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 110s Selecting previously unselected package autopkgtest-satdep. 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 86478 files and directories currently installed.) 110s Preparing to unpack .../2-autopkgtest-satdep.deb ... 110s Unpacking autopkgtest-satdep (0) ... 110s Setting up autopkgtest-satdep (0) ... 112s (Reading database ... 86478 files and directories currently installed.) 112s Removing autopkgtest-satdep (0) ... 113s autopkgtest [23:12:27]: test run-unit-test: [----------------------- 113s ============================= test session starts ============================== 113s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 113s cachedir: .pytest_cache 113s rootdir: /tmp/autopkgtest.700QTy/autopkgtest_tmp 113s plugins: typeguard-4.4.1 113s collecting ... collected 0 items / 8 errors 113s 113s ==================================== ERRORS ==================================== 113s __________________ ERROR collecting tests/test_core_checks.py __________________ 113s ImportError while importing test module '/tmp/autopkgtest.700QTy/autopkgtest_tmp/tests/test_core_checks.py'. 113s Hint: make sure your test modules/packages have valid Python names. 113s Traceback: 113s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 113s return _bootstrap._gcd_import(name[level:], package, level) 113s tests/test_core_checks.py:3: in 113s import pandas as pd 113s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 113s raise ImportError( 113s E ImportError: Unable to import required dependencies: 113s E numpy: Error importing numpy: you should not try to import numpy from 113s E its source directory; please exit the numpy source tree, and relaunch 113s E your python interpreter from there. 113s _______________ ERROR collecting tests/test_core_construction.py _______________ 113s ImportError while importing test module '/tmp/autopkgtest.700QTy/autopkgtest_tmp/tests/test_core_construction.py'. 113s Hint: make sure your test modules/packages have valid Python names. 113s Traceback: 113s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 113s return _bootstrap._gcd_import(name[level:], package, level) 113s tests/test_core_construction.py:3: in 113s import pandas as pd 113s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 113s raise ImportError( 113s E ImportError: Unable to import required dependencies: 113s E numpy: Error importing numpy: you should not try to import numpy from 113s E its source directory; please exit the numpy source tree, and relaunch 113s E your python interpreter from there. 113s __________________ ERROR collecting tests/test_core_specs.py ___________________ 113s ImportError while importing test module '/tmp/autopkgtest.700QTy/autopkgtest_tmp/tests/test_core_specs.py'. 113s Hint: make sure your test modules/packages have valid Python names. 113s Traceback: 113s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 113s return _bootstrap._gcd_import(name[level:], package, level) 113s tests/test_core_specs.py:3: in 113s import pandas as pd 113s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 113s raise ImportError( 113s E ImportError: Unable to import required dependencies: 113s E numpy: Error importing numpy: you should not try to import numpy from 113s E its source directory; please exit the numpy source tree, and relaunch 113s E your python interpreter from there. 113s ________________ ERROR collecting tests/test_core_stringops.py _________________ 113s ImportError while importing test module '/tmp/autopkgtest.700QTy/autopkgtest_tmp/tests/test_core_stringops.py'. 113s Hint: make sure your test modules/packages have valid Python names. 113s Traceback: 113s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 113s return _bootstrap._gcd_import(name[level:], package, level) 113s tests/test_core_stringops.py:1: in 113s import pandas as pd 113s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 113s raise ImportError( 113s E ImportError: Unable to import required dependencies: 113s E numpy: Error importing numpy: you should not try to import numpy from 113s E its source directory; please exit the numpy source tree, and relaunch 113s E your python interpreter from there. 113s ____________________ ERROR collecting tests/test_extras.py _____________________ 113s ImportError while importing test module '/tmp/autopkgtest.700QTy/autopkgtest_tmp/tests/test_extras.py'. 113s Hint: make sure your test modules/packages have valid Python names. 113s Traceback: 113s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 113s return _bootstrap._gcd_import(name[level:], package, level) 113s tests/test_extras.py:4: in 113s import pandas as pd 113s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 113s raise ImportError( 113s E ImportError: Unable to import required dependencies: 113s E numpy: Error importing numpy: you should not try to import numpy from 113s E its source directory; please exit the numpy source tree, and relaunch 113s E your python interpreter from there. 113s ______________________ ERROR collecting tests/test_io.py _______________________ 113s ImportError while importing test module '/tmp/autopkgtest.700QTy/autopkgtest_tmp/tests/test_io.py'. 113s Hint: make sure your test modules/packages have valid Python names. 113s Traceback: 113s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 113s return _bootstrap._gcd_import(name[level:], package, level) 113s tests/test_io.py:3: in 113s import pandas as pd 113s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 113s raise ImportError( 113s E ImportError: Unable to import required dependencies: 113s E numpy: Error importing numpy: you should not try to import numpy from 113s E its source directory; please exit the numpy source tree, and relaunch 113s E your python interpreter from there. 113s ______________________ ERROR collecting tests/test_ops.py ______________________ 113s ImportError while importing test module '/tmp/autopkgtest.700QTy/autopkgtest_tmp/tests/test_ops.py'. 113s Hint: make sure your test modules/packages have valid Python names. 113s Traceback: 113s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 113s return _bootstrap._gcd_import(name[level:], package, level) 113s tests/test_ops.py:3: in 113s import pandas as pd 113s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 113s raise ImportError( 113s E ImportError: Unable to import required dependencies: 113s E numpy: Error importing numpy: you should not try to import numpy from 113s E its source directory; please exit the numpy source tree, and relaunch 113s E your python interpreter from there. 113s __________________ ERROR collecting tests/test_ops_select.py ___________________ 113s ImportError while importing test module '/tmp/autopkgtest.700QTy/autopkgtest_tmp/tests/test_ops_select.py'. 113s Hint: make sure your test modules/packages have valid Python names. 113s Traceback: 113s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 113s return _bootstrap._gcd_import(name[level:], package, level) 113s tests/test_ops_select.py:1: in 113s import pandas as pd 113s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 113s raise ImportError( 113s E ImportError: Unable to import required dependencies: 113s E numpy: Error importing numpy: you should not try to import numpy from 113s E its source directory; please exit the numpy source tree, and relaunch 113s E your python interpreter from there. 113s =============================== warnings summary =============================== 113s tests/test_io.py:23 113s /tmp/autopkgtest.700QTy/autopkgtest_tmp/tests/test_io.py:23: SyntaxWarning: invalid escape sequence '\s' 113s assert bioframe.read_table(StringIO(d), schema="bed3", sep="\s+").shape == (3, 3) 113s 113s tests/test_io.py:24 113s /tmp/autopkgtest.700QTy/autopkgtest_tmp/tests/test_io.py:24: SyntaxWarning: invalid escape sequence '\s' 113s assert bioframe.read_table(StringIO(d), schema="bed6", sep="\s+").shape == (3, 6) 113s 113s tests/test_io.py:25 113s /tmp/autopkgtest.700QTy/autopkgtest_tmp/tests/test_io.py:25: SyntaxWarning: invalid escape sequence '\s' 113s assert bioframe.read_table(StringIO(d), schema="bed12", sep="\s+").shape == (3, 12) 113s 113s tests/test_io.py:33 113s /tmp/autopkgtest.700QTy/autopkgtest_tmp/tests/test_io.py:33: SyntaxWarning: invalid escape sequence '\s' 113s StringIO(d), schema="bedpe", sep="\s+", schema_is_strict=True 113s 113s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 113s =========================== short test summary info ============================ 113s ERROR tests/test_core_checks.py 113s ERROR tests/test_core_construction.py 113s ERROR tests/test_core_specs.py 113s ERROR tests/test_core_stringops.py 113s ERROR tests/test_extras.py 113s ERROR tests/test_io.py 113s ERROR tests/test_ops.py 113s ERROR tests/test_ops_select.py 113s !!!!!!!!!!!!!!!!!!! Interrupted: 8 errors during collection !!!!!!!!!!!!!!!!!!!! 113s ======================== 4 warnings, 8 errors in 0.36s ========================= 114s autopkgtest [23:12:28]: test run-unit-test: -----------------------] 114s autopkgtest [23:12:28]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 114s run-unit-test FAIL non-zero exit status 2 115s autopkgtest [23:12:29]: @@@@@@@@@@@@@@@@@@@@ summary 115s run-unit-test FAIL non-zero exit status 2 126s nova [W] Skipping flock for amd64 126s Creating nova instance adt-plucky-i386-python-bioframe-20241114-231034-juju-7f2275-prod-proposed-migration-environment-15-023abef4-363e-4bbc-a6d9-ed5c441c2b51 from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)...