0s autopkgtest [23:09:34]: starting date and time: 2024-11-14 23:09:34+0000 0s autopkgtest [23:09:34]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [23:09:34]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.59jfxpbl/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-bcbio-gff --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-10.secgroup --name adt-plucky-i386-python-bcbio-gff-20241114-230934-juju-7f2275-prod-proposed-migration-environment-15-dd39343d-5b62-4684-a575-38c01df3976a --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 42s autopkgtest [23:10:16]: testbed dpkg architecture: amd64 43s autopkgtest [23:10:17]: testbed apt version: 2.9.8 43s autopkgtest [23:10:17]: test architecture: i386 43s autopkgtest [23:10:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 44s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 44s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 44s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [102 kB] 44s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1025 kB] 44s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 44s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [144 kB] 44s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [77.0 kB] 44s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 44s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [293 kB] 44s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [803 kB] 44s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 44s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9128 B] 45s Fetched 2583 kB in 1s (3065 kB/s) 45s Reading package lists... 47s Reading package lists... 47s Building dependency tree... 47s Reading state information... 47s Calculating upgrade... 47s The following NEW packages will be installed: 47s python3.13-gdbm 47s The following packages will be upgraded: 47s libcap-ng0 libpython3-stdlib pastebinit python3 python3-gdbm python3-minimal 47s python3-systemd 48s 7 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 48s Need to get 178 kB of archives. 48s After this operation, 256 kB of additional disk space will be used. 48s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 48s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 48s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 48s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-3build1 [15.6 kB] 48s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 48s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 48s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 48s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build5 [45.7 kB] 48s Fetched 178 kB in 0s (422 kB/s) 48s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 48s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 48s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 48s Setting up python3-minimal (3.12.7-1) ... 49s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 49s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 49s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 49s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 49s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 49s Preparing to unpack .../libcap-ng0_0.8.5-3build1_amd64.deb ... 49s Unpacking libcap-ng0:amd64 (0.8.5-3build1) over (0.8.5-1) ... 49s Setting up libcap-ng0:amd64 (0.8.5-3build1) ... 49s Selecting previously unselected package python3.13-gdbm. 49s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 49s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 49s Unpacking python3.13-gdbm (3.13.0-2) ... 49s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 49s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 49s Preparing to unpack .../pastebinit_1.7.1-1_all.deb ... 49s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 49s Preparing to unpack .../python3-systemd_235-1build5_amd64.deb ... 49s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 49s Setting up python3.13-gdbm (3.13.0-2) ... 49s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 49s Setting up python3 (3.12.7-1) ... 49s Setting up python3-systemd (235-1build5) ... 49s Setting up python3-gdbm:amd64 (3.12.7-1) ... 49s Setting up pastebinit (1.7.1-1) ... 49s Processing triggers for libc-bin (2.40-1ubuntu3) ... 49s Processing triggers for man-db (2.12.1-3) ... 50s Reading package lists... 50s Building dependency tree... 50s Reading state information... 50s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 51s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 51s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 51s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 51s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 52s Reading package lists... 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 52s Calculating upgrade... 52s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 53s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s autopkgtest [23:10:29]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 55s autopkgtest [23:10:29]: @@@@@@@@@@@@@@@@@@@@ apt-source python-bcbio-gff 57s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-bcbio-gff 0.7.1-2 (dsc) [2386 B] 57s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-bcbio-gff 0.7.1-2 (tar) [20.1 kB] 57s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-bcbio-gff 0.7.1-2 (diff) [23.9 kB] 57s gpgv: Signature made Tue Nov 5 22:11:23 2024 UTC 57s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 57s gpgv: issuer "emollier@debian.org" 57s gpgv: Can't check signature: No public key 57s dpkg-source: warning: cannot verify inline signature for ./python-bcbio-gff_0.7.1-2.dsc: no acceptable signature found 57s autopkgtest [23:10:31]: testing package python-bcbio-gff version 0.7.1-2 57s autopkgtest [23:10:31]: build not needed 58s autopkgtest [23:10:32]: test run-unit-test: preparing testbed 60s Note, using file '/tmp/autopkgtest.HYmO8G/1-autopkgtest-satdep.dsc' to get the build dependencies 60s Reading package lists... 60s Building dependency tree... 60s Reading state information... 60s Starting pkgProblemResolver with broken count: 0 60s Starting 2 pkgProblemResolver with broken count: 0 60s Done 61s The following NEW packages will be installed: 61s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 61s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 g++ 61s g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 61s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu libasan8 libblas3 libcairo2 61s libcc1-0 libdeflate0 libfontconfig1 libfontenc1 libgcc-14-dev libgfortran5 61s libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libimagequant0 libisl23 61s libitm1 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 61s liblsan0 libmpc3 libopenjp2-7 libpixman-1-0 libpython3.13-minimal 61s libpython3.13-stdlib libquadmath0 libraqm0 libsharpyuv0 libstdc++-14-dev 61s libtiff6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 61s libxcb-render0 libxcb-shm0 libxrender1 python3-all python3-bcbio-gff 61s python3-biopython python3-cairo python3-freetype python3-numpy python3-pil 61s python3-reportlab python3-rlpycairo python3-six python3.13 61s python3.13-minimal sgml-base w3c-sgml-lib x11-common xfonts-encodings 61s xfonts-utils xml-core 61s 0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded. 61s Need to get 99.7 MB of archives. 61s After this operation, 334 MB of additional disk space will be used. 61s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 61s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 61s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB] 61s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 62s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 62s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 62s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 62s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 62s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 62s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 62s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 62s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 62s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 62s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 62s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 62s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 62s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 63s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 63s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 63s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 64s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 64s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 64s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 64s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 64s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 64s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 64s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 64s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 64s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 64s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 64s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 64s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB] 64s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 64s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 64s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB] 65s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB] 65s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 65s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 65s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 65s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 65s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 65s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 65s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 65s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 65s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 65s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 65s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 65s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 65s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 65s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 65s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 65s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 65s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 65s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 65s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 66s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 66s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 66s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 66s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 66s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 66s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 66s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 66s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 66s Get:64 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 66s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 66s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 66s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 10.4.0-1ubuntu1 [463 kB] 66s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cairo amd64 1.26.1-2 [119 kB] 66s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-freetype all 2.5.1-1 [92.3 kB] 66s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B] 66s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-reportlab all 4.2.5-1 [1107 kB] 66s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB] 66s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB] 66s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-biopython amd64 1.84+dfsg-4 [1714 kB] 66s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 66s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-bcbio-gff all 0.7.1-2 [33.9 kB] 67s Fetched 99.7 MB in 5s (18.3 MB/s) 67s Selecting previously unselected package libpython3.13-minimal:amd64. 67s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75554 files and directories currently installed.) 67s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_amd64.deb ... 67s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 67s Selecting previously unselected package python3.13-minimal. 67s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_amd64.deb ... 67s Unpacking python3.13-minimal (3.13.0-2) ... 67s Selecting previously unselected package sgml-base. 67s Preparing to unpack .../02-sgml-base_1.31_all.deb ... 67s Unpacking sgml-base (1.31) ... 67s Selecting previously unselected package libisl23:amd64. 67s Preparing to unpack .../03-libisl23_0.27-1_amd64.deb ... 67s Unpacking libisl23:amd64 (0.27-1) ... 67s Selecting previously unselected package libmpc3:amd64. 67s Preparing to unpack .../04-libmpc3_1.3.1-1build2_amd64.deb ... 67s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 67s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 67s Preparing to unpack .../05-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 67s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 67s Selecting previously unselected package cpp-14. 67s Preparing to unpack .../06-cpp-14_14.2.0-8ubuntu1_amd64.deb ... 67s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 67s Selecting previously unselected package cpp-x86-64-linux-gnu. 67s Preparing to unpack .../07-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 67s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 67s 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package libxcb-render0:amd64. 69s Preparing to unpack .../40-libxcb-render0_1.17.0-2_amd64.deb ... 69s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 69s Selecting previously unselected package libxcb-shm0:amd64. 69s Preparing to unpack .../41-libxcb-shm0_1.17.0-2_amd64.deb ... 69s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 69s Selecting previously unselected package libxrender1:amd64. 69s Preparing to unpack .../42-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 69s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 69s Selecting previously unselected package libcairo2:amd64. 69s Preparing to unpack .../43-libcairo2_1.18.2-2_amd64.deb ... 69s Unpacking libcairo2:amd64 (1.18.2-2) ... 69s Selecting previously unselected package libdeflate0:amd64. 69s Preparing to unpack .../44-libdeflate0_1.22-1_amd64.deb ... 69s Unpacking libdeflate0:amd64 (1.22-1) ... 69s Selecting previously unselected package libgfortran5:amd64. 69s Preparing to unpack .../45-libgfortran5_14.2.0-8ubuntu1_amd64.deb 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libsharpyuv0:amd64. 70s Preparing to unpack .../56-libsharpyuv0_1.4.0-0.1_amd64.deb ... 70s Unpacking libsharpyuv0:amd64 (1.4.0-0.1) ... 70s Selecting previously unselected package libjbig0:amd64. 70s Preparing to unpack .../57-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 70s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 70s Selecting previously unselected package libwebp7:amd64. 70s Preparing to unpack .../58-libwebp7_1.4.0-0.1_amd64.deb ... 70s Unpacking libwebp7:amd64 (1.4.0-0.1) ... 70s Selecting previously unselected package libtiff6:amd64. 70s Preparing to unpack .../59-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 70s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 70s Selecting previously unselected package libwebpdemux2:amd64. 70s Preparing to unpack .../60-libwebpdemux2_1.4.0-0.1_amd64.deb ... 70s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... 70s Selecting previously unselected package libwebpmux3:amd64. 70s Preparing to unpack .../61-libwebpmux3_1.4.0-0.1_amd64.deb ... 70s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... 70s Selecting previously unselected package python3.13. 70s Preparing to unpack .../62-python3.13_3.13.0-2_amd64.deb ... 70s Unpacking python3.13 (3.13.0-2) ... 70s Selecting previously unselected package python3-all. 70s Preparing to unpack .../63-python3-all_3.12.7-1_amd64.deb ... 70s Unpacking python3-all (3.12.7-1) ... 70s Selecting previously unselected package python3-numpy. 70s Preparing to unpack .../64-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 70s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 70s Selecting previously unselected package libopenjp2-7:amd64. 70s Preparing to unpack .../65-libopenjp2-7_2.5.0-2ubuntu1_amd64.deb ... 70s Unpacking libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 70s Selecting previously unselected package python3-pil:amd64. 70s Preparing to unpack .../66-python3-pil_10.4.0-1ubuntu1_amd64.deb ... 70s Unpacking python3-pil:amd64 (10.4.0-1ubuntu1) ... 70s Selecting previously unselected package python3-cairo. 70s Preparing to unpack .../67-python3-cairo_1.26.1-2_amd64.deb ... 70s Unpacking python3-cairo (1.26.1-2) ... 70s Selecting previously unselected package python3-freetype. 70s Preparing to unpack .../68-python3-freetype_2.5.1-1_all.deb ... 70s Unpacking python3-freetype (2.5.1-1) ... 70s Selecting previously unselected package python3-rlpycairo. 70s Preparing to unpack .../69-python3-rlpycairo_0.3.0-3_all.deb ... 70s Unpacking python3-rlpycairo (0.3.0-3) ... 70s Selecting previously unselected package python3-reportlab. 70s Preparing to unpack .../70-python3-reportlab_4.2.5-1_all.deb ... 70s Unpacking python3-reportlab (4.2.5-1) ... 70s Selecting previously unselected package xml-core. 70s Preparing to unpack .../71-xml-core_0.19_all.deb ... 70s Unpacking xml-core (0.19) ... 70s Selecting previously unselected package w3c-sgml-lib. 70s Preparing to unpack .../72-w3c-sgml-lib_1.3-3_all.deb ... 70s Unpacking w3c-sgml-lib (1.3-3) ... 70s Selecting previously unselected package python3-biopython. 70s Preparing to unpack .../73-python3-biopython_1.84+dfsg-4_amd64.deb ... 70s Unpacking python3-biopython (1.84+dfsg-4) ... 71s Selecting previously unselected package python3-six. 71s Preparing to unpack .../74-python3-six_1.16.0-7_all.deb ... 71s Unpacking python3-six (1.16.0-7) ... 71s Selecting previously unselected package python3-bcbio-gff. 71s Preparing to unpack .../75-python3-bcbio-gff_0.7.1-2_all.deb ... 71s Unpacking python3-bcbio-gff (0.7.1-2) ... 71s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 71s Setting up liblcms2-2:amd64 (2.16-2) ... 71s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 71s Setting up libsharpyuv0:amd64 (1.4.0-0.1) ... 71s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu2) ... 71s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 71s Setting up libxcb-render0:amd64 (1.17.0-2) ... 71s Setting up x11-common (1:7.7+23ubuntu3) ... 71s Setting up libdeflate0:amd64 (1.22-1) ... 71s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 71s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 71s Setting up python3-freetype (2.5.1-1) ... 71s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 71s Setting up python3-six (1.16.0-7) ... 71s Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... 71s Setting up libfontenc1:amd64 (1:1.1.8-1build1) ... 71s Setting up libblas3:amd64 (3.12.0-3build2) ... 71s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 71s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 71s Setting up libquadmath0:amd64 (14.2.0-8ubuntu1) ... 71s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 71s Setting up fonts-dejavu-mono (2.37-8) ... 71s Setting up libmpc3:amd64 (1.3.1-1build2) ... 71s Setting up fonts-dejavu-core (2.37-8) ... 71s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 71s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 71s Setting up libwebp7:amd64 (1.4.0-0.1) ... 71s Setting up libubsan1:amd64 (14.2.0-8ubuntu1) ... 71s Setting up libhwasan0:amd64 (14.2.0-8ubuntu1) ... 71s Setting up libasan8:amd64 (14.2.0-8ubuntu1) ... 71s Setting up libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 71s Setting up python3.13-minimal (3.13.0-2) ... 72s Setting up libharfbuzz0b:amd64 (10.0.1-1) ... 72s Setting up sgml-base (1.31) ... 72s Setting up libtsan2:amd64 (14.2.0-8ubuntu1) ... 72s Setting up libisl23:amd64 (0.27-1) ... 72s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 72s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 72s Setting up libcc1-0:amd64 (14.2.0-8ubuntu1) ... 72s Setting up liblsan0:amd64 (14.2.0-8ubuntu1) ... 72s Setting up libitm1:amd64 (14.2.0-8ubuntu1) ... 72s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 72s Setting up liblapack3:amd64 (3.12.0-3build2) ... 72s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 72s Setting up python3.13 (3.13.0-2) ... 73s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 73s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 73s Setting up python3-all (3.12.7-1) ... 73s Setting up xfonts-utils (1:7.7+7) ... 73s Setting up libraqm0:amd64 (0.10.1-1build1) ... 73s Setting up cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 73s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 76s Setting up cpp-14 (14.2.0-8ubuntu1) ... 76s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 76s Setting up xml-core (0.19) ... 76s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 76s Setting up libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 76s Setting up libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 76s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 76s Setting up fonts-urw-base35 (20200910-8) ... 76s Setting up libcairo2:amd64 (1.18.2-2) ... 76s Setting up python3-pil:amd64 (10.4.0-1ubuntu1) ... 77s Setting up cpp (4:14.1.0-2ubuntu1) ... 77s Setting up gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 77s Setting up python3-cairo (1.26.1-2) ... 77s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 77s Setting up gcc-14 (14.2.0-8ubuntu1) ... 77s Setting up python3-rlpycairo (0.3.0-3) ... 77s Setting up g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 77s Setting up python3-reportlab (4.2.5-1) ... 78s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 78s Setting up g++-14 (14.2.0-8ubuntu1) ... 78s Setting up gcc (4:14.1.0-2ubuntu1) ... 78s Setting up g++ (4:14.1.0-2ubuntu1) ... 78s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 78s Setting up build-essential (12.10ubuntu1) ... 78s Processing triggers for libc-bin (2.40-1ubuntu3) ... 78s Processing triggers for systemd (256.5-2ubuntu4) ... 78s Processing triggers for man-db (2.12.1-3) ... 79s Processing triggers for sgml-base (1.31) ... 79s Setting up w3c-sgml-lib (1.3-3) ... 101s Setting up python3-biopython (1.84+dfsg-4) ... 103s Setting up python3-bcbio-gff (0.7.1-2) ... 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 106s Starting pkgProblemResolver with broken count: 0 106s Starting 2 pkgProblemResolver with broken count: 0 106s Done 106s The following NEW packages will be installed: 106s autopkgtest-satdep 106s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 106s Need to get 0 B/700 B of archives. 106s After this operation, 0 B of additional disk space will be used. 106s Get:1 /tmp/autopkgtest.HYmO8G/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 106s Selecting previously unselected package autopkgtest-satdep. 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80816 files and directories currently installed.) 106s Preparing to unpack .../2-autopkgtest-satdep.deb ... 106s Unpacking autopkgtest-satdep (0) ... 106s Setting up autopkgtest-satdep (0) ... 108s (Reading database ... 80816 files and directories currently installed.) 108s Removing autopkgtest-satdep (0) ... 108s autopkgtest [23:11:22]: test run-unit-test: [----------------------- 109s Traceback (most recent call last): 109s File "/tmp/autopkgtest.HYmO8G/autopkgtest_tmp/test_GFFSeqIOFeatureAdder.py", line 11, in 109s from Bio import SeqIO 109s File "/usr/lib/python3/dist-packages/Bio/SeqIO/__init__.py", line 401, in 109s from Bio.SeqIO import TwoBitIO 109s File "/usr/lib/python3/dist-packages/Bio/SeqIO/TwoBitIO.py", line 80, in 109s raise MissingPythonDependencyError( 109s ...<2 lines>... 109s ) from None 109s Bio.MissingPythonDependencyError: Install NumPy if you want to use Bio.SeqIO with TwoBit files.See http://www.numpy.org/ 109s autopkgtest [23:11:23]: test run-unit-test: -----------------------] 110s autopkgtest [23:11:24]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 110s run-unit-test FAIL non-zero exit status 1 110s autopkgtest [23:11:24]: test autodep8-python3: preparing testbed 168s autopkgtest [23:12:22]: testbed dpkg architecture: amd64 168s autopkgtest [23:12:22]: testbed apt version: 2.9.8 169s autopkgtest [23:12:23]: test architecture: i386 169s autopkgtest [23:12:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 170s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 170s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 170s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1025 kB] 170s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [102 kB] 170s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 170s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [144 kB] 170s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [77.0 kB] 170s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 170s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [293 kB] 170s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [803 kB] 170s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 170s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9128 B] 170s Fetched 2583 kB in 1s (3086 kB/s) 170s Reading package lists... 173s Reading package lists... 173s Building dependency tree... 173s Reading state information... 173s Calculating upgrade... 173s The following NEW packages will be installed: 173s python3.13-gdbm 173s The following packages will be upgraded: 173s libcap-ng0 libpython3-stdlib pastebinit python3 python3-gdbm python3-minimal 173s python3-systemd 173s 7 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 173s Need to get 178 kB of archives. 173s After this operation, 256 kB of additional disk space will be used. 173s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 173s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 173s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 173s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-3build1 [15.6 kB] 173s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 173s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 173s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 173s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build5 [45.7 kB] 174s Fetched 178 kB in 0s (447 kB/s) 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 174s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 174s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 174s Setting up python3-minimal (3.12.7-1) ... 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 174s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 174s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 174s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 174s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 174s Preparing to unpack .../libcap-ng0_0.8.5-3build1_amd64.deb ... 174s Unpacking libcap-ng0:amd64 (0.8.5-3build1) over (0.8.5-1) ... 174s Setting up libcap-ng0:amd64 (0.8.5-3build1) ... 174s Selecting previously unselected package python3.13-gdbm. 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 174s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 174s Unpacking python3.13-gdbm (3.13.0-2) ... 174s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 174s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 174s Preparing to unpack .../pastebinit_1.7.1-1_all.deb ... 174s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 174s Preparing to unpack .../python3-systemd_235-1build5_amd64.deb ... 174s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 174s Setting up python3.13-gdbm (3.13.0-2) ... 174s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 174s Setting up python3 (3.12.7-1) ... 175s Setting up python3-systemd (235-1build5) ... 175s Setting up python3-gdbm:amd64 (3.12.7-1) ... 175s Setting up pastebinit (1.7.1-1) ... 175s Processing triggers for libc-bin (2.40-1ubuntu3) ... 175s Processing triggers for man-db (2.12.1-3) ... 175s Reading package lists... 176s Building dependency tree... 176s Reading state information... 176s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 176s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 176s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 176s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 177s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 177s Reading package lists... 177s Reading package lists... 177s Building dependency tree... 177s Reading state information... 178s Calculating upgrade... 178s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 178s Reading package lists... 178s Building dependency tree... 178s Reading state information... 178s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 183s Note, using file '/tmp/autopkgtest.HYmO8G/3-autopkgtest-satdep.dsc' to get the build dependencies 183s Reading package lists... 183s Building dependency tree... 183s Reading state information... 183s Starting pkgProblemResolver with broken count: 0 183s Starting 2 pkgProblemResolver with broken count: 0 183s Done 184s The following NEW packages will be installed: 184s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 184s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 g++ 184s g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 184s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu libasan8 libblas3 libcairo2 184s libcc1-0 libdeflate0 libfontconfig1 libfontenc1 libgcc-14-dev libgfortran5 184s libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libimagequant0 libisl23 184s libitm1 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 184s liblsan0 libmpc3 libopenjp2-7 libpixman-1-0 libpython3.13-minimal 184s libpython3.13-stdlib libquadmath0 libraqm0 libsharpyuv0 libstdc++-14-dev 184s libtiff6 libtsan2 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 184s libxcb-render0 libxcb-shm0 libxrender1 python3-all python3-bcbio-gff 184s python3-biopython python3-cairo python3-freetype python3-numpy python3-pil 184s python3-reportlab python3-rlpycairo python3-six python3.13 184s python3.13-minimal sgml-base w3c-sgml-lib x11-common xfonts-encodings 184s xfonts-utils xml-core 184s 0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded. 184s Need to get 99.7 MB of archives. 184s After this operation, 334 MB of additional disk space will be used. 184s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 185s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 185s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 sgml-base all 1.31 [11.4 kB] 185s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 185s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 185s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 185s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 185s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 185s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 185s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 185s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 185s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 185s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 185s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 185s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 185s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 185s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 185s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 185s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 185s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 186s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 186s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 186s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 186s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 186s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 186s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 186s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 186s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 186s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 186s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 186s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 186s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB] 186s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 186s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 186s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB] 187s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB] 187s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 187s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 187s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 187s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 187s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 187s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 187s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 187s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB] 187s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 187s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 187s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 187s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 187s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 187s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 187s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 187s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 187s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 187s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 187s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 187s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 187s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 187s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 187s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 187s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 187s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 187s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 187s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 187s Get:64 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 187s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 187s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 187s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 10.4.0-1ubuntu1 [463 kB] 187s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-cairo amd64 1.26.1-2 [119 kB] 187s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-freetype all 2.5.1-1 [92.3 kB] 187s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B] 187s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-reportlab all 4.2.5-1 [1107 kB] 187s Get:72 http://ftpmaster.internal/ubuntu plucky/main amd64 xml-core all 0.19 [20.3 kB] 187s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB] 187s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-biopython amd64 1.84+dfsg-4 [1714 kB] 187s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 187s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-bcbio-gff all 0.7.1-2 [33.9 kB] 188s Fetched 99.7 MB in 3s (29.4 MB/s) 188s Selecting previously unselected package libpython3.13-minimal:amd64. 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75554 files and directories currently installed.) 188s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_amd64.deb ... 188s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 188s Selecting previously unselected package python3.13-minimal. 188s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_amd64.deb ... 188s Unpacking python3.13-minimal (3.13.0-2) ... 188s Selecting previously unselected package sgml-base. 188s Preparing to unpack .../02-sgml-base_1.31_all.deb ... 188s Unpacking sgml-base (1.31) ... 188s Selecting previously unselected package libisl23:amd64. 188s Preparing to unpack .../03-libisl23_0.27-1_amd64.deb ... 188s Unpacking libisl23:amd64 (0.27-1) ... 188s Selecting previously unselected package libmpc3:amd64. 188s Preparing to unpack .../04-libmpc3_1.3.1-1build2_amd64.deb ... 188s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 188s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 188s Preparing to unpack .../05-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 188s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 188s Selecting previously unselected package cpp-14. 188s Preparing to unpack .../06-cpp-14_14.2.0-8ubuntu1_amd64.deb ... 188s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 188s Selecting previously unselected package cpp-x86-64-linux-gnu. 188s Preparing to unpack .../07-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 188s Unpacking cpp-x86-64-linux-gnu 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unselected package libgfortran5:amd64. 190s Preparing to unpack .../45-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 190s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 190s Selecting previously unselected package libgraphite2-3:amd64. 190s Preparing to unpack .../46-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 190s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 190s Selecting previously unselected package libharfbuzz0b:amd64. 190s Preparing to unpack .../47-libharfbuzz0b_10.0.1-1_amd64.deb ... 190s Unpacking libharfbuzz0b:amd64 (10.0.1-1) ... 190s Selecting previously unselected package libimagequant0:amd64. 190s Preparing to unpack .../48-libimagequant0_2.18.0-1build1_amd64.deb ... 190s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 190s Selecting previously unselected package libjpeg-turbo8:amd64. 190s Preparing to unpack .../49-libjpeg-turbo8_2.1.5-2ubuntu2_amd64.deb ... 190s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 190s Selecting previously unselected package libjpeg8:amd64. 190s Preparing to unpack .../50-libjpeg8_8c-2ubuntu11_amd64.deb ... 190s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 190s Selecting previously unselected package liblapack3:amd64. 190s Preparing to unpack .../51-liblapack3_3.12.0-3build2_amd64.deb ... 190s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 190s Selecting previously unselected package liblcms2-2:amd64. 190s Preparing to unpack .../52-liblcms2-2_2.16-2_amd64.deb ... 190s Unpacking liblcms2-2:amd64 (2.16-2) ... 190s Selecting previously unselected package liblerc4:amd64. 190s Preparing to unpack .../53-liblerc4_4.0.0+ds-4ubuntu2_amd64.deb ... 190s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu2) ... 190s Selecting previously unselected package libpython3.13-stdlib:amd64. 190s Preparing to unpack .../54-libpython3.13-stdlib_3.13.0-2_amd64.deb ... 190s Unpacking libpython3.13-stdlib:amd64 (3.13.0-2) ... 190s Selecting previously unselected package libraqm0:amd64. 190s Preparing to unpack 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python3-pil:amd64. 191s Preparing to unpack .../66-python3-pil_10.4.0-1ubuntu1_amd64.deb ... 191s Unpacking python3-pil:amd64 (10.4.0-1ubuntu1) ... 191s Selecting previously unselected package python3-cairo. 191s Preparing to unpack .../67-python3-cairo_1.26.1-2_amd64.deb ... 191s Unpacking python3-cairo (1.26.1-2) ... 191s Selecting previously unselected package python3-freetype. 191s Preparing to unpack .../68-python3-freetype_2.5.1-1_all.deb ... 191s Unpacking python3-freetype (2.5.1-1) ... 191s Selecting previously unselected package python3-rlpycairo. 191s Preparing to unpack .../69-python3-rlpycairo_0.3.0-3_all.deb ... 191s Unpacking python3-rlpycairo (0.3.0-3) ... 191s Selecting previously unselected package python3-reportlab. 191s Preparing to unpack .../70-python3-reportlab_4.2.5-1_all.deb ... 191s Unpacking python3-reportlab (4.2.5-1) ... 191s Selecting previously unselected package xml-core. 191s Preparing to unpack .../71-xml-core_0.19_all.deb ... 191s Unpacking xml-core 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libxrender1:amd64 (1:0.9.10-1.1build1) ... 191s Setting up libxcb-render0:amd64 (1.17.0-2) ... 191s Setting up x11-common (1:7.7+23ubuntu3) ... 192s Setting up libdeflate0:amd64 (1.22-1) ... 192s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 192s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 192s Setting up python3-freetype (2.5.1-1) ... 192s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 192s Setting up python3-six (1.16.0-7) ... 192s Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... 192s Setting up libfontenc1:amd64 (1:1.1.8-1build1) ... 192s Setting up libblas3:amd64 (3.12.0-3build2) ... 192s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 192s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 192s Setting up libquadmath0:amd64 (14.2.0-8ubuntu1) ... 192s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 192s Setting up fonts-dejavu-mono (2.37-8) ... 192s Setting up libmpc3:amd64 (1.3.1-1build2) ... 192s Setting up fonts-dejavu-core (2.37-8) ... 192s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 192s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 192s Setting up libwebp7:amd64 (1.4.0-0.1) ... 192s Setting up libubsan1:amd64 (14.2.0-8ubuntu1) ... 192s Setting up libhwasan0:amd64 (14.2.0-8ubuntu1) ... 192s Setting up libasan8:amd64 (14.2.0-8ubuntu1) ... 192s Setting up libopenjp2-7:amd64 (2.5.0-2ubuntu1) ... 192s Setting up python3.13-minimal (3.13.0-2) ... 193s Setting up libharfbuzz0b:amd64 (10.0.1-1) ... 193s Setting up sgml-base (1.31) ... 193s Setting up libtsan2:amd64 (14.2.0-8ubuntu1) ... 193s Setting up libisl23:amd64 (0.27-1) ... 193s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 193s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 193s Setting up libcc1-0:amd64 (14.2.0-8ubuntu1) ... 193s Setting up liblsan0:amd64 (14.2.0-8ubuntu1) ... 193s Setting up libitm1:amd64 (14.2.0-8ubuntu1) ... 193s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 193s Setting up liblapack3:amd64 (3.12.0-3build2) ... 193s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 193s Setting up python3.13 (3.13.0-2) ... 193s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 194s Setting up libwebpdemux2:amd64 (1.4.0-0.1) ... 194s Setting up python3-all (3.12.7-1) ... 194s Setting up xfonts-utils (1:7.7+7) ... 194s Setting up libraqm0:amd64 (0.10.1-1build1) ... 194s Setting up cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 194s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 196s Setting up cpp-14 (14.2.0-8ubuntu1) ... 196s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 196s Setting up xml-core (0.19) ... 197s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 197s Setting up libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 197s Setting up libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 197s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 197s Setting up fonts-urw-base35 (20200910-8) ... 197s Setting up libcairo2:amd64 (1.18.2-2) ... 197s Setting up python3-pil:amd64 (10.4.0-1ubuntu1) ... 197s Setting up cpp (4:14.1.0-2ubuntu1) ... 197s Setting up gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 197s Setting up python3-cairo (1.26.1-2) ... 197s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 197s Setting up gcc-14 (14.2.0-8ubuntu1) ... 197s Setting up python3-rlpycairo (0.3.0-3) ... 197s Setting up g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 197s Setting up python3-reportlab (4.2.5-1) ... 199s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 199s Setting up g++-14 (14.2.0-8ubuntu1) ... 199s Setting up gcc (4:14.1.0-2ubuntu1) ... 199s Setting up g++ (4:14.1.0-2ubuntu1) ... 199s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 199s Setting up build-essential (12.10ubuntu1) ... 199s Processing triggers for libc-bin (2.40-1ubuntu3) ... 199s Processing triggers for systemd (256.5-2ubuntu4) ... 199s Processing triggers for man-db (2.12.1-3) ... 200s Processing triggers for sgml-base (1.31) ... 200s Setting up w3c-sgml-lib (1.3-3) ... 224s Setting up python3-biopython (1.84+dfsg-4) ... 224s Setting up python3-bcbio-gff (0.7.1-2) ... 226s Reading package lists... 226s Building dependency tree... 226s Reading state information... 226s Starting pkgProblemResolver with broken count: 0 226s Starting 2 pkgProblemResolver with broken count: 0 226s Done 226s The following NEW packages will be installed: 226s autopkgtest-satdep 226s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 226s Need to get 0 B/704 B of archives. 226s After this operation, 0 B of additional disk space will be used. 226s Get:1 /tmp/autopkgtest.HYmO8G/4-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [704 B] 227s Selecting previously unselected package autopkgtest-satdep. 227s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80816 files and directories currently installed.) 227s Preparing to unpack .../4-autopkgtest-satdep.deb ... 227s Unpacking autopkgtest-satdep (0) ... 227s Setting up autopkgtest-satdep (0) ... 227s autopkgtest: WARNING: package python3-bcbio-gff:i386 is not installed though it should be 229s (Reading database ... 80816 files and directories currently installed.) 229s Removing autopkgtest-satdep (0) ... 230s autopkgtest [23:13:24]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import BCBio.GFF; print(BCBio.GFF)" ; done 230s autopkgtest [23:13:24]: test autodep8-python3: [----------------------- 230s Testing with python3.13: 231s Traceback (most recent call last): 231s File "", line 1, in 231s import BCBio.GFF; print(BCBio.GFF) 231s ^^^^^^^^^^^^^^^^ 231s File "/usr/lib/python3/dist-packages/BCBio/GFF/__init__.py", line 3, in 231s from BCBio.GFF.GFFParser import GFFParser, DiscoGFFParser, GFFExaminer, parse, parse_simple 231s File "/usr/lib/python3/dist-packages/BCBio/GFF/GFFParser.py", line 44, in 231s from Bio import SeqIO 231s File "/usr/lib/python3/dist-packages/Bio/SeqIO/__init__.py", line 401, in 231s from Bio.SeqIO import TwoBitIO 231s File "/usr/lib/python3/dist-packages/Bio/SeqIO/TwoBitIO.py", line 80, in 231s raise MissingPythonDependencyError( 231s ...<2 lines>... 231s ) from None 231s Bio.MissingPythonDependencyError: Install NumPy if you want to use Bio.SeqIO with TwoBit files.See http://www.numpy.org/ 231s autopkgtest [23:13:25]: test autodep8-python3: -----------------------] 231s autopkgtest [23:13:25]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 231s autodep8-python3 FAIL non-zero exit status 1 232s autopkgtest [23:13:26]: @@@@@@@@@@@@@@@@@@@@ summary 232s run-unit-test FAIL non-zero exit status 1 232s autodep8-python3 FAIL non-zero exit status 1 243s nova [W] Skipping flock for amd64 243s Creating nova instance adt-plucky-i386-python-bcbio-gff-20241114-230934-juju-7f2275-prod-proposed-migration-environment-15-dd39343d-5b62-4684-a575-38c01df3976a from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)... 243s nova [W] Skipping flock for amd64 243s Creating nova instance adt-plucky-i386-python-bcbio-gff-20241114-230934-juju-7f2275-prod-proposed-migration-environment-15-dd39343d-5b62-4684-a575-38c01df3976a from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)...