0s autopkgtest [21:42:39]: starting date and time: 2024-11-14 21:42:39+0000 0s autopkgtest [21:42:39]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [21:42:39]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.snhmxwl0/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade picopore --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-23.secgroup --name adt-plucky-i386-picopore-20241114-214239-juju-7f2275-prod-proposed-migration-environment-20-0191502d-ca4b-46e9-8f2b-02c3fb915934 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 46s autopkgtest [21:43:25]: testbed dpkg architecture: amd64 46s autopkgtest [21:43:25]: testbed apt version: 2.9.8 46s autopkgtest [21:43:25]: test architecture: i386 46s autopkgtest [21:43:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 47s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 47s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.1 kB] 47s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 47s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [106 kB] 47s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1037 kB] 48s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [79.0 kB] 48s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [144 kB] 48s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 48s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [296 kB] 48s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [807 kB] 48s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 48s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9388 B] 48s Fetched 2609 kB in 1s (3020 kB/s) 48s Reading package lists... 50s Reading package lists... 51s Building dependency tree... 51s Reading state information... 51s Calculating upgrade... 51s The following NEW packages will be installed: 51s python3.13-gdbm 51s The following packages will be upgraded: 51s libcap-ng0 libpython3-stdlib pastebinit python3 python3-gdbm python3-minimal 51s python3-systemd 51s 7 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 51s Need to get 178 kB of archives. 51s After this operation, 256 kB of additional disk space will be used. 51s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 51s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 51s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 51s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-3build1 [15.6 kB] 51s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 51s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 51s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 51s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build5 [45.7 kB] 52s Fetched 178 kB in 0s (441 kB/s) 52s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 52s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 52s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 52s Setting up python3-minimal (3.12.7-1) ... 52s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 52s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 52s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 52s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 52s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 52s Preparing to unpack .../libcap-ng0_0.8.5-3build1_amd64.deb ... 52s Unpacking libcap-ng0:amd64 (0.8.5-3build1) over (0.8.5-1) ... 52s Setting up libcap-ng0:amd64 (0.8.5-3build1) ... 52s Selecting previously unselected package python3.13-gdbm. 52s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 52s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 52s Unpacking python3.13-gdbm (3.13.0-2) ... 52s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 52s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 52s Preparing to unpack .../pastebinit_1.7.1-1_all.deb ... 52s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 52s Preparing to unpack .../python3-systemd_235-1build5_amd64.deb ... 52s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 52s Setting up python3.13-gdbm (3.13.0-2) ... 52s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 52s Setting up python3 (3.12.7-1) ... 53s Setting up python3-systemd (235-1build5) ... 53s Setting up python3-gdbm:amd64 (3.12.7-1) ... 53s Setting up pastebinit (1.7.1-1) ... 53s Processing triggers for libc-bin (2.40-1ubuntu3) ... 53s Processing triggers for man-db (2.12.1-3) ... 53s Reading package lists... 55s Building dependency tree... 55s Reading state information...Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 55s 55s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 55s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 55s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 55s Reading package lists... 55s Reading package lists... 56s Building dependency tree... 56s Reading state information... 56s Calculating upgrade... 56s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 56s Reading package lists... 56s Building dependency tree... 56s Reading state information... 57s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 59s autopkgtest [21:43:38]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 60s autopkgtest [21:43:39]: @@@@@@@@@@@@@@@@@@@@ apt-source picopore 62s Get:1 http://ftpmaster.internal/ubuntu plucky/universe picopore 1.2.0-3 (dsc) [2191 B] 62s Get:2 http://ftpmaster.internal/ubuntu plucky/universe picopore 1.2.0-3 (tar) [6276 kB] 62s Get:3 http://ftpmaster.internal/ubuntu plucky/universe picopore 1.2.0-3 (diff) [5332 B] 62s gpgv: Signature made Fri Dec 15 20:40:34 2023 UTC 62s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 62s gpgv: issuer "tille@debian.org" 62s gpgv: Can't check signature: No public key 62s dpkg-source: warning: cannot verify inline signature for ./picopore_1.2.0-3.dsc: no acceptable signature found 62s autopkgtest [21:43:41]: testing package picopore version 1.2.0-3 63s autopkgtest [21:43:42]: build not needed 63s autopkgtest [21:43:42]: test run-unit-test: preparing testbed 65s Note, using file '/tmp/autopkgtest.AqRoZz/1-autopkgtest-satdep.dsc' to get the build dependencies 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Starting pkgProblemResolver with broken count: 0 66s Starting 2 pkgProblemResolver with broken count: 0 66s Done 66s The following NEW packages will be installed: 66s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu g++ 66s g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 66s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu hdf5-tools libaec0 libasan8 66s libblas3 libcc1-0 libgcc-14-dev libgfortran5 libgomp1 libhdf5-103-1t64 66s libhdf5-hl-100t64 libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc 66s libjs-underscore liblapack3 liblsan0 liblzf1 libmpc3 libpython3.13-minimal 66s libpython3.13-stdlib libquadmath0 libstdc++-14-dev libsz2 libtsan2 libubsan1 66s picopore python3-all python3-h5py python3-h5py-serial python3-numpy 66s python3-picopore python3-watchdog python3.13 python3.13-minimal 66s 0 upgraded, 49 newly installed, 0 to remove and 0 not upgraded. 66s Need to get 83.2 MB of archives. 66s After this operation, 293 MB of additional disk space will be used. 66s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 67s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 67s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 67s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 67s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 67s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 67s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 67s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 67s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 67s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 67s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 67s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 67s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 67s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 68s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 68s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 68s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 68s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 68s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 68s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 68s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 68s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 68s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 68s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 69s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 69s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 69s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 69s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 69s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 69s Get:30 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 69s Get:31 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 69s Get:32 http://ftpmaster.internal/ubuntu plucky/universe amd64 hdf5-tools amd64 1.10.10+repack-4ubuntu3 [336 kB] 69s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 69s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 69s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 69s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 69s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 69s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 69s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 69s Get:40 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 69s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 69s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 69s Get:43 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.11.0-5ubuntu1 [1107 kB] 69s Get:44 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.11.0-5ubuntu1 [7974 B] 69s Get:45 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-watchdog all 5.0.0-1 [125 kB] 69s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-picopore all 1.2.0-3 [15.6 kB] 69s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 picopore all 1.2.0-3 [9878 B] 69s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 69s Get:49 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 69s Fetched 83.2 MB in 3s (30.5 MB/s) 69s Selecting previously unselected package libpython3.13-minimal:amd64. 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75554 files and directories currently installed.) 69s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_amd64.deb ... 69s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 69s Selecting previously unselected package python3.13-minimal. 69s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_amd64.deb ... 69s Unpacking python3.13-minimal (3.13.0-2) ... 69s Selecting previously unselected package libisl23:amd64. 69s Preparing to unpack .../02-libisl23_0.27-1_amd64.deb ... 69s Unpacking libisl23:amd64 (0.27-1) ... 69s Selecting previously unselected package libmpc3:amd64. 69s Preparing to unpack .../03-libmpc3_1.3.1-1build2_amd64.deb ... 69s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 69s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 69s Preparing to unpack .../04-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 69s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 70s Selecting previously unselected package cpp-14. 70s Preparing to unpack .../05-cpp-14_14.2.0-8ubuntu1_amd64.deb ... 70s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 70s Selecting previously unselected package cpp-x86-64-linux-gnu. 70s Preparing to unpack .../06-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 70s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 70s Selecting previously unselected package cpp. 70s Preparing to unpack .../07-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 70s Unpacking cpp (4:14.1.0-2ubuntu1) ... 70s Selecting previously unselected package libcc1-0:amd64. 70s Preparing to unpack .../08-libcc1-0_14.2.0-8ubuntu1_amd64.deb ... 70s Unpacking libcc1-0:amd64 (14.2.0-8ubuntu1) ... 70s Selecting previously unselected package libgomp1:amd64. 70s Preparing to unpack .../09-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 70s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 70s Selecting previously unselected package libitm1:amd64. 70s Preparing to unpack .../10-libitm1_14.2.0-8ubuntu1_amd64.deb ... 70s Unpacking libitm1:amd64 (14.2.0-8ubuntu1) ... 70s Selecting previously unselected package libasan8:amd64. 70s Preparing to unpack .../11-libasan8_14.2.0-8ubuntu1_amd64.deb ... 70s Unpacking libasan8:amd64 (14.2.0-8ubuntu1) ... 70s Selecting previously unselected package liblsan0:amd64. 70s Preparing to unpack .../12-liblsan0_14.2.0-8ubuntu1_amd64.deb ... 70s Unpacking liblsan0:amd64 (14.2.0-8ubuntu1) ... 70s Selecting previously unselected package libtsan2:amd64. 70s Preparing to unpack .../13-libtsan2_14.2.0-8ubuntu1_amd64.deb ... 70s Unpacking libtsan2:amd64 (14.2.0-8ubuntu1) ... 70s Selecting previously unselected package libubsan1:amd64. 70s Preparing to unpack .../14-libubsan1_14.2.0-8ubuntu1_amd64.deb ... 70s Unpacking libubsan1:amd64 (14.2.0-8ubuntu1) ... 70s Selecting previously unselected package libhwasan0:amd64. 70s Preparing to unpack .../15-libhwasan0_14.2.0-8ubuntu1_amd64.deb ... 70s Unpacking libhwasan0:amd64 (14.2.0-8ubuntu1) ... 70s Selecting previously unselected package libquadmath0:amd64. 70s Preparing to unpack .../16-libquadmath0_14.2.0-8ubuntu1_amd64.deb ... 70s Unpacking libquadmath0:amd64 (14.2.0-8ubuntu1) ... 70s Selecting previously unselected package libgcc-14-dev:amd64. 70s Preparing to unpack .../17-libgcc-14-dev_14.2.0-8ubuntu1_amd64.deb ... 70s Unpacking libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 70s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 70s Preparing to unpack .../18-gcc-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 70s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 70s Selecting previously unselected package gcc-14. 70s Preparing to unpack .../19-gcc-14_14.2.0-8ubuntu1_amd64.deb ... 70s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 71s Selecting previously unselected package gcc-x86-64-linux-gnu. 71s Preparing to unpack .../20-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 71s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 71s Selecting previously unselected package gcc. 71s Preparing to unpack .../21-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 71s Unpacking gcc (4:14.1.0-2ubuntu1) ... 71s Selecting previously unselected package libstdc++-14-dev:amd64. 71s Preparing to unpack .../22-libstdc++-14-dev_14.2.0-8ubuntu1_amd64.deb ... 71s Unpacking libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 71s Selecting previously unselected package g++-14-x86-64-linux-gnu. 71s Preparing to unpack .../23-g++-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 71s Unpacking g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 71s Selecting previously unselected package g++-14. 71s Preparing to unpack .../24-g++-14_14.2.0-8ubuntu1_amd64.deb ... 71s Unpacking g++-14 (14.2.0-8ubuntu1) ... 71s Selecting previously unselected package g++-x86-64-linux-gnu. 71s Preparing to unpack .../25-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 71s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 71s Selecting previously unselected package g++. 71s Preparing to unpack .../26-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 71s Unpacking g++ (4:14.1.0-2ubuntu1) ... 71s Selecting previously unselected package build-essential. 71s Preparing to unpack .../27-build-essential_12.10ubuntu1_amd64.deb ... 71s Unpacking build-essential (12.10ubuntu1) ... 71s Selecting previously unselected package libaec0:amd64. 71s Preparing to unpack .../28-libaec0_1.1.3-1_amd64.deb ... 71s Unpacking libaec0:amd64 (1.1.3-1) ... 71s Selecting previously unselected package libsz2:amd64. 71s Preparing to unpack .../29-libsz2_1.1.3-1_amd64.deb ... 71s Unpacking libsz2:amd64 (1.1.3-1) ... 71s Selecting previously unselected package libhdf5-103-1t64:amd64. 71s Preparing to unpack .../30-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 71s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 71s Selecting previously unselected package hdf5-tools. 71s Preparing to unpack .../31-hdf5-tools_1.10.10+repack-4ubuntu3_amd64.deb ... 71s Unpacking hdf5-tools (1.10.10+repack-4ubuntu3) ... 71s Selecting previously unselected package libblas3:amd64. 71s Preparing to unpack .../32-libblas3_3.12.0-3build2_amd64.deb ... 71s Unpacking libblas3:amd64 (3.12.0-3build2) ... 71s Selecting previously unselected package libgfortran5:amd64. 71s Preparing to unpack .../33-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 71s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 71s Selecting previously unselected package libhdf5-hl-100t64:amd64. 71s Preparing to unpack .../34-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 71s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 71s Selecting previously unselected package libjs-jquery. 71s Preparing to unpack .../35-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 71s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 71s Selecting previously unselected package libjs-underscore. 71s Preparing to unpack .../36-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 71s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 71s Selecting previously unselected package libjs-sphinxdoc. 71s Preparing to unpack .../37-libjs-sphinxdoc_7.4.7-4_all.deb ... 71s Unpacking libjs-sphinxdoc (7.4.7-4) ... 71s Selecting previously unselected package liblapack3:amd64. 71s Preparing to unpack .../38-liblapack3_3.12.0-3build2_amd64.deb ... 71s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 71s Selecting previously unselected package liblzf1:amd64. 71s Preparing to unpack .../39-liblzf1_3.6-4_amd64.deb ... 71s Unpacking liblzf1:amd64 (3.6-4) ... 71s Selecting previously unselected package libpython3.13-stdlib:amd64. 71s Preparing to unpack .../40-libpython3.13-stdlib_3.13.0-2_amd64.deb ... 71s Unpacking libpython3.13-stdlib:amd64 (3.13.0-2) ... 71s Selecting previously unselected package python3-numpy. 71s Preparing to unpack .../41-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 71s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 72s Selecting previously unselected package python3-h5py-serial. 72s Preparing to unpack .../42-python3-h5py-serial_3.11.0-5ubuntu1_amd64.deb ... 72s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 72s Selecting previously unselected package python3-h5py. 72s Preparing to unpack .../43-python3-h5py_3.11.0-5ubuntu1_all.deb ... 72s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 72s Selecting previously unselected package python3-watchdog. 72s Preparing to unpack .../44-python3-watchdog_5.0.0-1_all.deb ... 72s Unpacking python3-watchdog (5.0.0-1) ... 72s Selecting previously unselected package python3-picopore. 72s Preparing to unpack .../45-python3-picopore_1.2.0-3_all.deb ... 72s Unpacking python3-picopore (1.2.0-3) ... 72s Selecting previously unselected package picopore. 72s Preparing to unpack .../46-picopore_1.2.0-3_all.deb ... 72s Unpacking picopore (1.2.0-3) ... 72s Selecting previously unselected package python3.13. 72s Preparing to unpack .../47-python3.13_3.13.0-2_amd64.deb ... 72s Unpacking python3.13 (3.13.0-2) ... 72s Selecting previously unselected package python3-all. 72s Preparing to unpack .../48-python3-all_3.12.7-1_amd64.deb ... 72s Unpacking python3-all (3.12.7-1) ... 72s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 72s Setting up libaec0:amd64 (1.1.3-1) ... 72s Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... 72s Setting up libblas3:amd64 (3.12.0-3build2) ... 72s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 72s Setting up liblzf1:amd64 (3.6-4) ... 72s Setting up libquadmath0:amd64 (14.2.0-8ubuntu1) ... 72s Setting up libmpc3:amd64 (1.3.1-1build2) ... 72s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 72s Setting up libubsan1:amd64 (14.2.0-8ubuntu1) ... 72s Setting up libhwasan0:amd64 (14.2.0-8ubuntu1) ... 72s Setting up libasan8:amd64 (14.2.0-8ubuntu1) ... 72s Setting up python3.13-minimal (3.13.0-2) ... 73s Setting up libtsan2:amd64 (14.2.0-8ubuntu1) ... 73s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 73s Setting up libisl23:amd64 (0.27-1) ... 73s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 73s Setting up libcc1-0:amd64 (14.2.0-8ubuntu1) ... 73s Setting up liblsan0:amd64 (14.2.0-8ubuntu1) ... 73s Setting up libsz2:amd64 (1.1.3-1) ... 73s Setting up libitm1:amd64 (14.2.0-8ubuntu1) ... 73s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 73s Setting up liblapack3:amd64 (3.12.0-3build2) ... 73s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 73s Setting up python3.13 (3.13.0-2) ... 73s Setting up python3-all (3.12.7-1) ... 73s Setting up cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 73s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 76s Setting up libjs-sphinxdoc (7.4.7-4) ... 76s Setting up cpp-14 (14.2.0-8ubuntu1) ... 76s Setting up libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 76s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 76s Setting up libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 76s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 76s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 76s Setting up python3-watchdog (5.0.0-1) ... 76s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 77s Setting up hdf5-tools (1.10.10+repack-4ubuntu3) ... 77s Setting up python3-h5py (3.11.0-5ubuntu1) ... 77s Setting up cpp (4:14.1.0-2ubuntu1) ... 77s Setting up python3-picopore (1.2.0-3) ... 77s Setting up gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 77s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 77s Setting up picopore (1.2.0-3) ... 77s Setting up gcc-14 (14.2.0-8ubuntu1) ... 77s Setting up g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 77s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 77s Setting up g++-14 (14.2.0-8ubuntu1) ... 77s Setting up gcc (4:14.1.0-2ubuntu1) ... 77s Setting up g++ (4:14.1.0-2ubuntu1) ... 77s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 77s Setting up build-essential (12.10ubuntu1) ... 77s Processing triggers for systemd (256.5-2ubuntu4) ... 77s Processing triggers for man-db (2.12.1-3) ... 78s Processing triggers for libc-bin (2.40-1ubuntu3) ... 79s Reading package lists... 79s Building dependency tree... 79s Reading state information... 79s Starting pkgProblemResolver with broken count: 0 80s Starting 2 pkgProblemResolver with broken count: 0 80s Done 80s The following NEW packages will be installed: 80s autopkgtest-satdep 80s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 80s Need to get 0 B/696 B of archives. 80s After this operation, 0 B of additional disk space will be used. 80s Get:1 /tmp/autopkgtest.AqRoZz/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 80s Selecting previously unselected package autopkgtest-satdep. 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78809 files and directories currently installed.) 80s Preparing to unpack .../2-autopkgtest-satdep.deb ... 80s Unpacking autopkgtest-satdep (0) ... 80s Setting up autopkgtest-satdep (0) ... 82s (Reading database ... 78809 files and directories currently installed.) 82s Removing autopkgtest-satdep (0) ... 83s autopkgtest [21:44:02]: test run-unit-test: [----------------------- 83s Performing lossless compression on 1 files... 83s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 83s .Complete. 83s Original size: 673522 83s Compressed size: 673522 83s Performing lossless decompression on 1 files... 83s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 83s .Complete. 83s Compressed size: 673522 83s Reverted size: 1347044 83s Checking equivalence of /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/sample_data/albacore_1d_original.fast5 (file 1) and /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 (file 2)... 83s Complete with 0 errors. 83s Performing lossless compression on 1 files... 83s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 83s .Complete. 83s Original size: 673522 83s Compressed size: 673522 84s Performing deep lossless compression on 1 files... 84s .Complete. 84s Original size: 673522 84s Compressed size: 629000 84s Performing deep lossless decompression on 1 files... 84s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 84s .Complete. 84s Compressed size: 629000 84s Reverted size: 1276128 84s Checking equivalence of /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/sample_data/albacore_1d_original.fast5 (file 1) and /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 (file 2)... 84s Complete with 0 errors. 84s Performing deep lossless compression on 1 files... 84s .Complete. 84s Original size: 673522 84s Compressed size: 629000 84s Performing raw compression with FASTQ and summary on 1 files... 84s .Complete. 84s Original size: 673522 84s Compressed size: 119182 84s Performing raw compression with summary and no FASTQ on 1 files... 84s .Complete. 84s Original size: 673522 84s Compressed size: 103635 85s Performing raw compression with FASTQ and no summary on 1 files... 85s .Complete. 85s Original size: 673522 85s Compressed size: 116766 85s Performing raw compression with no summary and no FASTQ on 1 files... 85s .Complete. 85s Original size: 673522 85s Compressed size: 98915 85s Performing raw compression with manual keyword Analyses on 1 files... 85s .Complete. 85s Original size: 673522 85s Compressed size: 98915 85s Performing lossless compression on 1 files... 85s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 85s .Complete. 85s Original size: 2003942 85s Compressed size: 2003942 85s Performing lossless decompression on 1 files... 85s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 85s .Complete. 85s Compressed size: 2003942 85s Reverted size: 4007884 85s Checking equivalence of /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/sample_data/metrichor_2d_original.fast5 (file 1) and /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 (file 2)... 86s Complete with 0 errors. 86s Performing lossless compression on 1 files... 86s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 86s .Complete. 86s Original size: 2003942 86s Compressed size: 2003942 86s Performing deep lossless compression on 1 files... 86s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 86s .Complete. 86s Original size: 2003942 86s Compressed size: 2003942 86s Performing deep lossless decompression on 1 files... 86s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 86s .Complete. 86s Compressed size: 2003942 86s Reverted size: 4007884 86s Checking equivalence of /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/sample_data/metrichor_2d_original.fast5 (file 1) and /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 (file 2)... 86s Complete with 0 errors. 86s Performing deep lossless compression on 1 files... 86s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 86s .Complete. 86s Original size: 2003942 86s Compressed size: 2003942 87s Performing raw compression with FASTQ and summary on 1 files... 87s .Complete. 87s Original size: 2003942 87s Compressed size: 270517 87s Performing raw compression with summary and no FASTQ on 1 files... 87s .Complete. 87s Original size: 2003942 87s Compressed size: 232978 87s Performing raw compression with FASTQ and no summary on 1 files... 87s .Complete. 87s Original size: 2003942 87s Compressed size: 261197 87s Performing raw compression with no summary and no FASTQ on 1 files... 87s .Complete. 87s Original size: 2003942 87s Compressed size: 219602 88s Performing raw compression with manual keyword Analyses on 1 files... 88s .Complete. 88s Original size: 2003942 88s Compressed size: 219602 88s Performing real time lossless compression... 88s Monitoring /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 88s No files found under /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime 98s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime/albacore_1d_original.fast5 108s .ERROR: Unable to open file (truncated file: eof = 1384448, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 118s . 118s Exiting Picopore. 118s Processing in-progress files. Press Ctrl-C again to abort. 118s Complete. 118s Original size: 1541874 118s Compressed size: 2677464 118s Performing real time deep lossless compression... 118s Monitoring /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 118s No files found under /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime 138s .ERROR: Unable to open file (truncated file: eof = 1703936, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 148s . 148s Exiting Picopore. 148s Processing in-progress files. Press Ctrl-C again to abort. 148s Complete. 148s Original size: 2123506 148s Compressed size: 2332936 148s Performing real time raw compression with FASTQ and summary... 148s Monitoring /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 148s No files found under /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime 168s .ERROR: Unable to open file (truncated file: eof = 1568768, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 178s . 178s Exiting Picopore. 178s Processing in-progress files. Press Ctrl-C again to abort. 178s Complete. 178s Original size: 2017010 178s Compressed size: 2019726 179s Performing real time raw compression with summary and no FASTQ... 179s Monitoring /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 179s No files found under /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime 199s .ERROR: Unable to open file (truncated file: eof = 1703936, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 209s . 209s Exiting Picopore. 209s Processing in-progress files. Press Ctrl-C again to abort. 209s Complete. 209s Original size: 1824498 209s Compressed size: 2107577 209s Performing real time raw compression with FASTQ and no summary... 209s Monitoring /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 209s No files found under /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime 229s .ERROR: Unable to open file (truncated file: eof = 499712, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 239s . 239s Exiting Picopore. 239s Processing in-progress files. Press Ctrl-C again to abort. 239s Complete. 239s Original size: 820978 239s Compressed size: 1562654 239s Performing real time raw compression with no summary and no FASTQ... 239s Monitoring /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 239s No files found under /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime 259s .ERROR: Unable to open file (truncated file: eof = 1130496, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 269s . 269s Exiting Picopore. 269s Processing in-progress files. Press Ctrl-C again to abort. 269s Complete. 269s Original size: 1070834 269s Compressed size: 2102857 270s Performing real time raw compression with manual keyword Analyses... 270s Monitoring /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 270s No files found under /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime 290s .ERROR: Unable to open file (truncated file: eof = 618496, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.AqRoZz/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 300s . 300s Exiting Picopore. 300s Processing in-progress files. Press Ctrl-C again to abort. 300s Complete. 300s Original size: 911090 300s Compressed size: 1364579 300s python3 -m picopore -y --print-every 1 --test --mode lossless sample_data/albacore_1d_original.fast5 300s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode lossless sample_data/albacore_1d_original.fast5 300s python3 -m picopore -y --print-every 1 --test --mode deep-lossless sample_data/albacore_1d_original.fast5 300s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode deep-lossless sample_data/albacore_1d_original.fast5 300s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --summary sample_data/albacore_1d_original.fast5 300s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --summary --no-fastq sample_data/albacore_1d_original.fast5 300s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --no-summary sample_data/albacore_1d_original.fast5 300s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --no-fastq --no-summary sample_data/albacore_1d_original.fast5 300s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --manual Analyses sample_data/albacore_1d_original.fast5 300s python3 -m picopore -y --print-every 1 --test --mode lossless sample_data/metrichor_2d_original.fast5 300s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode lossless sample_data/metrichor_2d_original.fast5 300s python3 -m picopore -y --print-every 1 --test --mode deep-lossless sample_data/metrichor_2d_original.fast5 300s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode deep-lossless sample_data/metrichor_2d_original.fast5 300s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --summary sample_data/metrichor_2d_original.fast5 300s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --summary --no-fastq sample_data/metrichor_2d_original.fast5 300s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --no-summary sample_data/metrichor_2d_original.fast5 300s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --no-fastq --no-summary sample_data/metrichor_2d_original.fast5 300s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --manual Analyses sample_data/metrichor_2d_original.fast5 300s python3 -m picopore -y --realtime --print-every 1 --mode lossless realtime 300s python3 -m picopore -y --realtime --print-every 1 --mode deep-lossless realtime 300s python3 -m picopore -y --realtime --print-every 1 --fastq --summary --mode raw realtime 300s python3 -m picopore -y --realtime --print-every 1 --summary --no-fastq --mode raw realtime 300s python3 -m picopore -y --realtime --print-every 1 --fastq --no-summary --mode raw realtime 300s python3 -m picopore -y --realtime --print-every 1 --no-fastq --no-summary --mode raw realtime 300s python3 -m picopore -y --realtime --print-every 1 --manual Analyses --mode raw realtime 300s PASS 300s autopkgtest [21:47:39]: test run-unit-test: -----------------------] 301s autopkgtest [21:47:40]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 301s run-unit-test PASS 301s autopkgtest [21:47:40]: test autodep8-python3: preparing testbed 354s autopkgtest [21:48:33]: testbed dpkg architecture: amd64 355s autopkgtest [21:48:34]: testbed apt version: 2.9.8 355s autopkgtest [21:48:34]: test architecture: i386 355s autopkgtest [21:48:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup 356s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 356s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [106 kB] 356s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1037 kB] 356s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.1 kB] 356s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 356s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [79.0 kB] 356s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [144 kB] 356s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 356s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [807 kB] 357s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [296 kB] 357s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9388 B] 357s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [740 B] 357s Fetched 2609 kB in 1s (3074 kB/s) 357s Reading package lists... 359s Reading package lists... 359s Building dependency tree... 359s Reading state information... 360s Calculating upgrade... 360s The following NEW packages will be installed: 360s python3.13-gdbm 360s The following packages will be upgraded: 360s libcap-ng0 libpython3-stdlib pastebinit python3 python3-gdbm python3-minimal 360s python3-systemd 360s 7 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 360s Need to get 178 kB of archives. 360s After this operation, 256 kB of additional disk space will be used. 360s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 360s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 360s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 360s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libcap-ng0 amd64 0.8.5-3build1 [15.6 kB] 360s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 360s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 360s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 pastebinit all 1.7.1-1 [14.9 kB] 360s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-systemd amd64 235-1build5 [45.7 kB] 360s Fetched 178 kB in 0s (428 kB/s) 361s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 361s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 361s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 361s Setting up python3-minimal (3.12.7-1) ... 361s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 361s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 361s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 361s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 361s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 361s Preparing to unpack .../libcap-ng0_0.8.5-3build1_amd64.deb ... 361s Unpacking libcap-ng0:amd64 (0.8.5-3build1) over (0.8.5-1) ... 361s Setting up libcap-ng0:amd64 (0.8.5-3build1) ... 361s Selecting previously unselected package python3.13-gdbm. 361s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 361s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 361s Unpacking python3.13-gdbm (3.13.0-2) ... 361s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 361s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 361s Preparing to unpack .../pastebinit_1.7.1-1_all.deb ... 361s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 361s Preparing to unpack .../python3-systemd_235-1build5_amd64.deb ... 361s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 361s Setting up python3.13-gdbm (3.13.0-2) ... 361s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 361s Setting up python3 (3.12.7-1) ... 362s Setting up python3-systemd (235-1build5) ... 362s Setting up python3-gdbm:amd64 (3.12.7-1) ... 362s Setting up pastebinit (1.7.1-1) ... 362s Processing triggers for libc-bin (2.40-1ubuntu3) ... 362s Processing triggers for man-db (2.12.1-3) ... 362s Reading package lists... 362s Building dependency tree... 362s Reading state information... 363s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 363s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 363s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 363s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 363s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 364s Reading package lists... 364s Reading package lists... 364s Building dependency tree... 364s Reading state information... 365s Calculating upgrade... 365s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 365s Reading package lists... 365s Building dependency tree... 365s Reading state information... 365s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 370s Note, using file '/tmp/autopkgtest.AqRoZz/3-autopkgtest-satdep.dsc' to get the build dependencies 370s Reading package lists... 370s Building dependency tree... 370s Reading state information... 370s Starting pkgProblemResolver with broken count: 0 370s Starting 2 pkgProblemResolver with broken count: 0 370s Done 371s The following NEW packages will be installed: 371s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu g++ 371s g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 371s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu hdf5-tools libaec0 libasan8 371s libblas3 libcc1-0 libgcc-14-dev libgfortran5 libgomp1 libhdf5-103-1t64 371s libhdf5-hl-100t64 libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc 371s libjs-underscore liblapack3 liblsan0 liblzf1 libmpc3 libpython3.13-minimal 371s libpython3.13-stdlib libquadmath0 libstdc++-14-dev libsz2 libtsan2 libubsan1 371s python3-all python3-h5py python3-h5py-serial python3-numpy python3-picopore 371s python3-watchdog python3.13 python3.13-minimal 371s 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. 371s Need to get 83.2 MB of archives. 371s After this operation, 293 MB of additional disk space will be used. 371s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 371s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 372s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 372s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 372s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 373s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 373s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 373s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 373s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 373s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 373s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 373s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 373s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 373s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 373s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 373s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 373s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 373s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 373s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 374s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 374s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 374s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 374s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 374s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 375s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 375s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 375s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 375s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 375s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 375s Get:30 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 375s Get:31 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 375s Get:32 http://ftpmaster.internal/ubuntu plucky/universe amd64 hdf5-tools amd64 1.10.10+repack-4ubuntu3 [336 kB] 375s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 375s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 375s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 375s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 375s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 375s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 375s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 375s Get:40 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 375s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 375s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 375s Get:43 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 375s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 376s Get:45 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.11.0-5ubuntu1 [1107 kB] 376s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.11.0-5ubuntu1 [7974 B] 376s Get:47 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-watchdog all 5.0.0-1 [125 kB] 376s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-picopore all 1.2.0-3 [15.6 kB] 376s Fetched 83.2 MB in 5s (17.5 MB/s) 376s Selecting previously unselected package libpython3.13-minimal:amd64. 376s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75554 files and directories currently installed.) 376s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_amd64.deb ... 376s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 376s Selecting previously unselected package python3.13-minimal. 376s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_amd64.deb ... 376s Unpacking python3.13-minimal (3.13.0-2) ... 376s Selecting previously unselected package libisl23:amd64. 376s Preparing to unpack .../02-libisl23_0.27-1_amd64.deb ... 376s Unpacking libisl23:amd64 (0.27-1) ... 376s Selecting previously unselected package libmpc3:amd64. 376s Preparing to unpack .../03-libmpc3_1.3.1-1build2_amd64.deb ... 376s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 376s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 376s Preparing to unpack .../04-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 376s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 376s Selecting previously unselected package cpp-14. 376s Preparing to unpack .../05-cpp-14_14.2.0-8ubuntu1_amd64.deb ... 376s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 376s Selecting previously unselected package cpp-x86-64-linux-gnu. 376s Preparing to unpack .../06-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 376s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 376s Selecting previously unselected package cpp. 376s Preparing to unpack .../07-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 376s Unpacking cpp (4:14.1.0-2ubuntu1) ... 376s Selecting previously unselected package libcc1-0:amd64. 376s Preparing to unpack .../08-libcc1-0_14.2.0-8ubuntu1_amd64.deb ... 376s Unpacking libcc1-0:amd64 (14.2.0-8ubuntu1) ... 376s Selecting previously unselected package libgomp1:amd64. 376s Preparing to unpack .../09-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 376s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 376s Selecting previously unselected package libitm1:amd64. 376s Preparing to unpack .../10-libitm1_14.2.0-8ubuntu1_amd64.deb ... 376s Unpacking libitm1:amd64 (14.2.0-8ubuntu1) ... 376s Selecting previously unselected package libasan8:amd64. 376s Preparing to unpack .../11-libasan8_14.2.0-8ubuntu1_amd64.deb ... 376s Unpacking libasan8:amd64 (14.2.0-8ubuntu1) ... 377s Selecting previously unselected package liblsan0:amd64. 377s Preparing to unpack .../12-liblsan0_14.2.0-8ubuntu1_amd64.deb ... 377s Unpacking liblsan0:amd64 (14.2.0-8ubuntu1) ... 377s Selecting previously unselected package libtsan2:amd64. 377s Preparing to unpack .../13-libtsan2_14.2.0-8ubuntu1_amd64.deb ... 377s Unpacking libtsan2:amd64 (14.2.0-8ubuntu1) ... 377s Selecting previously unselected package libubsan1:amd64. 377s Preparing to unpack .../14-libubsan1_14.2.0-8ubuntu1_amd64.deb ... 377s Unpacking libubsan1:amd64 (14.2.0-8ubuntu1) ... 377s Selecting previously unselected package libhwasan0:amd64. 377s Preparing to unpack .../15-libhwasan0_14.2.0-8ubuntu1_amd64.deb ... 377s Unpacking libhwasan0:amd64 (14.2.0-8ubuntu1) ... 377s Selecting previously unselected package libquadmath0:amd64. 377s Preparing to unpack .../16-libquadmath0_14.2.0-8ubuntu1_amd64.deb ... 377s Unpacking libquadmath0:amd64 (14.2.0-8ubuntu1) ... 377s Selecting previously unselected package libgcc-14-dev:amd64. 377s Preparing to unpack .../17-libgcc-14-dev_14.2.0-8ubuntu1_amd64.deb ... 377s Unpacking libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 377s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 377s Preparing to unpack .../18-gcc-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 377s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 377s Selecting previously unselected package gcc-14. 377s Preparing to unpack .../19-gcc-14_14.2.0-8ubuntu1_amd64.deb ... 377s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 377s Selecting previously unselected package gcc-x86-64-linux-gnu. 377s Preparing to unpack .../20-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 377s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 377s Selecting previously unselected package gcc. 377s Preparing to unpack .../21-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 377s Unpacking gcc (4:14.1.0-2ubuntu1) ... 377s Selecting previously unselected package libstdc++-14-dev:amd64. 377s Preparing to unpack .../22-libstdc++-14-dev_14.2.0-8ubuntu1_amd64.deb ... 377s Unpacking libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 377s Selecting previously unselected package g++-14-x86-64-linux-gnu. 377s Preparing to unpack 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libaec0:amd64 (1.1.3-1) ... 378s Selecting previously unselected package libsz2:amd64. 378s Preparing to unpack .../29-libsz2_1.1.3-1_amd64.deb ... 378s Unpacking libsz2:amd64 (1.1.3-1) ... 378s Selecting previously unselected package libhdf5-103-1t64:amd64. 378s Preparing to unpack .../30-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 378s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 378s Selecting previously unselected package hdf5-tools. 378s Preparing to unpack .../31-hdf5-tools_1.10.10+repack-4ubuntu3_amd64.deb ... 378s Unpacking hdf5-tools (1.10.10+repack-4ubuntu3) ... 378s Selecting previously unselected package libblas3:amd64. 378s Preparing to unpack .../32-libblas3_3.12.0-3build2_amd64.deb ... 378s Unpacking libblas3:amd64 (3.12.0-3build2) ... 378s Selecting previously unselected package libgfortran5:amd64. 378s Preparing to unpack .../33-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 378s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 378s Selecting 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(libblas.so.3-x86_64-linux-gnu) in auto mode 379s Setting up liblzf1:amd64 (3.6-4) ... 379s Setting up libquadmath0:amd64 (14.2.0-8ubuntu1) ... 379s Setting up libmpc3:amd64 (1.3.1-1build2) ... 379s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 379s Setting up libubsan1:amd64 (14.2.0-8ubuntu1) ... 379s Setting up libhwasan0:amd64 (14.2.0-8ubuntu1) ... 379s Setting up libasan8:amd64 (14.2.0-8ubuntu1) ... 379s Setting up python3.13-minimal (3.13.0-2) ... 379s Setting up libtsan2:amd64 (14.2.0-8ubuntu1) ... 379s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 379s Setting up libisl23:amd64 (0.27-1) ... 379s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 379s Setting up libcc1-0:amd64 (14.2.0-8ubuntu1) ... 379s Setting up liblsan0:amd64 (14.2.0-8ubuntu1) ... 379s Setting up libsz2:amd64 (1.1.3-1) ... 379s Setting up libitm1:amd64 (14.2.0-8ubuntu1) ... 379s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 379s Setting up liblapack3:amd64 (3.12.0-3build2) ... 379s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 379s Setting up python3.13 (3.13.0-2) ... 380s Setting up python3-all (3.12.7-1) ... 380s Setting up cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 380s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 383s Setting up libjs-sphinxdoc (7.4.7-4) ... 383s Setting up cpp-14 (14.2.0-8ubuntu1) ... 383s Setting up libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 383s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 383s Setting up libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 383s Setting up cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 383s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 383s Setting up python3-watchdog (5.0.0-1) ... 383s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 384s Setting up hdf5-tools (1.10.10+repack-4ubuntu3) ... 384s Setting up python3-h5py (3.11.0-5ubuntu1) ... 384s Setting up cpp (4:14.1.0-2ubuntu1) ... 384s Setting up python3-picopore (1.2.0-3) ... 384s Setting up gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 384s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 384s Setting up gcc-14 (14.2.0-8ubuntu1) ... 384s Setting up g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 384s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 384s Setting up g++-14 (14.2.0-8ubuntu1) ... 384s Setting up gcc (4:14.1.0-2ubuntu1) ... 384s Setting up g++ (4:14.1.0-2ubuntu1) ... 384s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 384s Setting up build-essential (12.10ubuntu1) ... 384s Processing triggers for systemd (256.5-2ubuntu4) ... 384s Processing triggers for man-db (2.12.1-3) ... 385s Processing triggers for libc-bin (2.40-1ubuntu3) ... 386s Reading package lists... 386s Building dependency tree... 386s Reading state information... 386s Starting pkgProblemResolver with broken count: 0 387s Starting 2 pkgProblemResolver with broken count: 0 387s Done 387s The following NEW packages will be installed: 387s autopkgtest-satdep 387s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 387s Need to get 0 B/696 B of archives. 387s After this operation, 0 B of additional disk space will be used. 387s Get:1 /tmp/autopkgtest.AqRoZz/4-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 387s Selecting previously unselected package autopkgtest-satdep. 387s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78797 files and directories currently installed.) 387s Preparing to unpack .../4-autopkgtest-satdep.deb ... 387s Unpacking autopkgtest-satdep (0) ... 387s Setting up autopkgtest-satdep (0) ... 388s autopkgtest: WARNING: package python3-picopore:i386 is not installed though it should be 389s (Reading database ... 78797 files and directories currently installed.) 389s Removing autopkgtest-satdep (0) ... 391s autopkgtest [21:49:10]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import picopore; print(picopore)" ; done 391s autopkgtest [21:49:10]: test autodep8-python3: [----------------------- 392s Testing with python3.13: 392s Traceback (most recent call last): 392s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 392s from . import multiarray 392s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 392s from . import overrides 392s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 392s from numpy.core._multiarray_umath import ( 392s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 392s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 392s 392s During handling of the above exception, another exception occurred: 392s 392s Traceback (most recent call last): 392s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 392s from numpy.__config__ import show as show_config 392s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 392s from numpy.core._multiarray_umath import ( 392s ...<3 lines>... 392s ) 392s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 392s raise ImportError(msg) 392s ImportError: 392s 392s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 392s 392s Importing the numpy C-extensions failed. This error can happen for 392s many reasons, often due to issues with your setup or how NumPy was 392s installed. 392s 392s We have compiled some common reasons and troubleshooting tips at: 392s 392s https://numpy.org/devdocs/user/troubleshooting-importerror.html 392s 392s Please note and check the following: 392s 392s * The Python version is: Python3.13 from "/usr/bin/python3.13" 392s * The NumPy version is: "1.26.4" 392s 392s and make sure that they are the versions you expect. 392s Please carefully study the documentation linked above for further help. 392s 392s Original error was: No module named 'numpy.core._multiarray_umath' 392s 392s 392s The above exception was the direct cause of the following exception: 392s 392s Traceback (most recent call last): 392s File "", line 1, in 392s import picopore; print(picopore) 392s ^^^^^^^^^^^^^^^ 392s File "/usr/lib/python3/dist-packages/picopore/__init__.py", line 2, in 392s from picopore.util import log 392s File "/usr/lib/python3/dist-packages/picopore/util.py", line 19, in 392s import numpy as np 392s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 392s raise ImportError(msg) from e 392s ImportError: Error importing numpy: you should not try to import numpy from 392s its source directory; please exit the numpy source tree, and relaunch 392s your python interpreter from there. 392s autopkgtest [21:49:11]: test autodep8-python3: -----------------------] 392s autodep8-python3 FAIL non-zero exit status 1 392s autopkgtest [21:49:11]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 393s autopkgtest [21:49:12]: @@@@@@@@@@@@@@@@@@@@ summary 393s run-unit-test PASS 393s autodep8-python3 FAIL non-zero exit status 1 404s nova [W] Skipping flock for amd64 404s Creating nova instance adt-plucky-i386-picopore-20241114-214239-juju-7f2275-prod-proposed-migration-environment-20-0191502d-ca4b-46e9-8f2b-02c3fb915934 from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)... 404s nova [W] Skipping flock for amd64 404s Creating nova instance adt-plucky-i386-picopore-20241114-214239-juju-7f2275-prod-proposed-migration-environment-20-0191502d-ca4b-46e9-8f2b-02c3fb915934 from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)...