0s autopkgtest [11:42:48]: starting date and time: 2025-02-19 11:42:48+0000
  0s autopkgtest [11:42:48]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [11:42:48]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._pril4nm/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:last-align --apt-upgrade nanook --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=last-align/1609-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-27.secgroup --name adt-plucky-i386-nanook-20250219-114248-juju-7f2275-prod-proposed-migration-environment-2-c1af3823-8896-4c55-bdb0-9331443ffaa1 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 61s autopkgtest [11:43:49]: testbed dpkg architecture: amd64
 62s autopkgtest [11:43:50]: testbed apt version: 2.9.29
 62s autopkgtest [11:43:50]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 63s autopkgtest [11:43:51]: testbed release detected to be: None
 63s autopkgtest [11:43:51]: updating testbed package index (apt update)
 64s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
 64s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 64s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 64s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 64s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.1 kB]
 65s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [750 kB]
 65s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.9 kB]
 65s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B]
 65s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [81.8 kB]
 65s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [101 kB]
 65s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2412 B]
 65s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [7984 B]
 65s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [265 kB]
 65s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [697 kB]
 65s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [3128 B]
 65s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [11.5 kB]
 65s Fetched 2124 kB in 1s (1916 kB/s)
 66s Reading package lists...
 66s Reading package lists...
 67s Building dependency tree...
 67s Reading state information...
 67s Calculating upgrade...
 67s The following NEW packages will be installed:
 67s   libapt-pkg7.0
 67s The following packages will be upgraded:
 67s   apt apt-utils iproute2 liblsof0 libp11-kit0 lsof rsyslog
 67s 7 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
 67s Need to get 5234 kB of archives.
 67s After this operation, 4074 kB of additional disk space will be used.
 67s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libapt-pkg7.0 amd64 2.9.30 [1131 kB]
 68s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 apt amd64 2.9.30 [1434 kB]
 68s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 apt-utils amd64 2.9.30 [222 kB]
 68s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 iproute2 amd64 6.13.0-1ubuntu1 [1277 kB]
 68s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libp11-kit0 amd64 0.25.5-2ubuntu3 [311 kB]
 68s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 rsyslog amd64 8.2412.0-2ubuntu1 [555 kB]
 68s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 lsof amd64 4.99.4+dfsg-1 [245 kB]
 68s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsof0 amd64 4.99.4+dfsg-1 [59.6 kB]
 69s Preconfiguring packages ...
 69s Fetched 5234 kB in 1s (3844 kB/s)
 69s Selecting previously unselected package libapt-pkg7.0:amd64.
 69s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 108925 files and directories currently installed.)
 69s Preparing to unpack .../libapt-pkg7.0_2.9.30_amd64.deb ...
 69s Unpacking libapt-pkg7.0:amd64 (2.9.30) ...
 69s Setting up libapt-pkg7.0:amd64 (2.9.30) ...
 69s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 108974 files and directories currently installed.)
 69s Preparing to unpack .../archives/apt_2.9.30_amd64.deb ...
 69s Unpacking apt (2.9.30) over (2.9.29) ...
 69s Setting up apt (2.9.30) ...
 70s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 108974 files and directories currently installed.)
 70s Preparing to unpack .../0-apt-utils_2.9.30_amd64.deb ...
 70s Unpacking apt-utils (2.9.30) over (2.9.29) ...
 70s Preparing to unpack .../1-iproute2_6.13.0-1ubuntu1_amd64.deb ...
 70s Unpacking iproute2 (6.13.0-1ubuntu1) over (6.10.0-2ubuntu1) ...
 70s Preparing to unpack .../2-libp11-kit0_0.25.5-2ubuntu3_amd64.deb ...
 70s Unpacking libp11-kit0:amd64 (0.25.5-2ubuntu3) over (0.25.5-2ubuntu2) ...
 70s Preparing to unpack .../3-rsyslog_8.2412.0-2ubuntu1_amd64.deb ...
 70s Unpacking rsyslog (8.2412.0-2ubuntu1) over (8.2412.0-1ubuntu1) ...
 70s Preparing to unpack .../4-lsof_4.99.4+dfsg-1_amd64.deb ...
 70s Unpacking lsof (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ...
 70s Preparing to unpack .../5-liblsof0_4.99.4+dfsg-1_amd64.deb ...
 70s Unpacking liblsof0 (4.99.4+dfsg-1) over (4.99.3+dfsg-2) ...
 70s Setting up apt-utils (2.9.30) ...
 70s Setting up liblsof0 (4.99.4+dfsg-1) ...
 70s Setting up iproute2 (6.13.0-1ubuntu1) ...
 71s Setting up rsyslog (8.2412.0-2ubuntu1) ...
 71s info: The user `syslog' is already a member of `adm'.
 72s Setting up libp11-kit0:amd64 (0.25.5-2ubuntu3) ...
 72s Setting up lsof (4.99.4+dfsg-1) ...
 72s Processing triggers for man-db (2.13.0-1) ...
 74s Processing triggers for libc-bin (2.40-4ubuntu1) ...
 75s Reading package lists...
 75s Building dependency tree...
 75s Reading state information...
 75s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 75s autopkgtest [11:44:03]: upgrading testbed (apt dist-upgrade and autopurge)
 75s Reading package lists...
 76s Building dependency tree...
 76s Reading state information...
 76s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 76s Starting 2 pkgProblemResolver with broken count: 0
 76s Done
 76s Entering ResolveByKeep
 77s 
 77s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 77s Reading package lists...
 77s Building dependency tree...
 77s Reading state information...
 77s Starting pkgProblemResolver with broken count: 0
 77s Starting 2 pkgProblemResolver with broken count: 0
 77s Done
 78s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 78s autopkgtest [11:44:06]: rebooting testbed after setup commands that affected boot
101s autopkgtest [11:44:29]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Tue Feb  4 16:02:16 UTC 2025
104s autopkgtest [11:44:32]: @@@@@@@@@@@@@@@@@@@@ apt-source nanook
107s Get:1 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (dsc) [2220 B]
107s Get:2 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (tar) [95.2 kB]
107s Get:3 http://ftpmaster.internal/ubuntu plucky/universe nanook 1.33+dfsg-6 (diff) [1818 kB]
107s gpgv: Signature made Wed Dec 18 14:21:48 2024 UTC
107s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
107s gpgv:                issuer "emollier@debian.org"
107s gpgv: Can't check signature: No public key
107s dpkg-source: warning: cannot verify inline signature for ./nanook_1.33+dfsg-6.dsc: no acceptable signature found
108s autopkgtest [11:44:36]: testing package nanook version 1.33+dfsg-6
108s autopkgtest [11:44:36]: build not needed
108s autopkgtest [11:44:36]: test run-unit-test: preparing testbed
109s Reading package lists...
109s Building dependency tree...
109s Reading state information...
109s Starting pkgProblemResolver with broken count: 0
109s Starting 2 pkgProblemResolver with broken count: 0
109s Done
110s The following NEW packages will be installed:
110s   ca-certificates-java default-jre-headless fontconfig fontconfig-config
110s   fonts-dejavu-core fonts-dejavu-mono fonts-lmodern hdf5-tools java-common
110s   last-align libaec0 libapache-pom-java libblas3 libcairo2 libcommons-io-java
110s   libcommons-parent-java libdatrie1 libdeflate0 libfontconfig1 libgfortran5
110s   libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310 libhdf5-hl-310 libice6
110s   libjbig0 libjpeg-turbo8 libjpeg8 libkpathsea6 liblapack3 liblcms2-2 liblerc4
110s   libmpfi0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
110s   libpaper2 libpcsclite1 libpixman-1-0 libpotrace0 libptexenc1 libsharpyuv0
110s   libsm6 libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data
110s   libthai0 libtiff6 libtk8.6 libwebp7 libxaw7 libxcb-render0 libxcb-shm0
110s   libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzzip-0-13t64
110s   littler nanook nanook-examples openjdk-21-jre-headless r-base-core
110s   r-cran-cli r-cran-colorspace r-cran-fansi r-cran-farver r-cran-ggplot2
110s   r-cran-glue r-cran-gridextra r-cran-gtable r-cran-isoband r-cran-labeling
110s   r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass
110s   r-cran-matrix r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-pillar
110s   r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer
110s   r-cran-rcpp r-cran-reshape r-cran-rlang r-cran-scales r-cran-tibble
110s   r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr t1utils tex-common
110s   texlive-base texlive-binaries texlive-latex-base unzip x11-common xdg-utils
110s   zip
110s 0 upgraded, 114 newly installed, 0 to remove and 0 not upgraded.
110s Need to get 168 MB of archives.
110s After this operation, 485 MB of additional disk space will be used.
110s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 ca-certificates-java all 20240118 [11.6 kB]
110s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 java-common all 0.76 [6852 B]
110s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB]
110s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
110s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
110s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcsclite1 amd64 2.3.1-1 [26.6 kB]
110s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 openjdk-21-jre-headless amd64 21.0.6+7-1 [46.4 MB]
114s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 default-jre-headless amd64 2:1.21-76 [3178 B]
114s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
114s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
114s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB]
114s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB]
114s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-2ubuntu1 [180 kB]
114s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lmodern all 2.005-1 [4799 kB]
115s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB]
115s Get:16 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B]
115s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB]
115s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB]
115s Get:19 http://ftpmaster.internal/ubuntu plucky/universe amd64 hdf5-tools amd64 1.14.5+repack-3 [401 kB]
115s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 last-align amd64 1609-1 [1686 kB]
115s Get:21 http://ftpmaster.internal/ubuntu plucky/universe amd64 libapache-pom-java all 33-2 [5874 B]
115s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB]
115s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
115s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
115s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
115s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
115s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB]
115s Get:28 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-parent-java all 56-1 [10.7 kB]
115s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-io-java all 2.18.0-1 [477 kB]
115s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB]
115s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB]
115s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250213-1ubuntu1 [920 kB]
115s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250213-1ubuntu1 [148 kB]
115s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
115s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB]
115s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
115s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB]
115s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-5build2 [67.0 kB]
115s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB]
115s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
115s Get:41 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB]
115s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
115s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
115s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.1-1 [255 kB]
115s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [52.6 kB]
115s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [29.1 kB]
115s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB]
115s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB]
115s Get:49 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB]
115s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-5build2 [43.7 kB]
115s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
115s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB]
115s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-5build2 [62.5 kB]
115s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB]
115s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB]
115s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-5build2 [145 kB]
115s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
115s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
115s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB]
115s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
115s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
115s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB]
115s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
115s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB]
115s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB]
115s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB]
115s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB]
115s Get:68 http://ftpmaster.internal/ubuntu plucky/universe amd64 libzzip-0-13t64 amd64 0.13.72+dfsg.1-1.2build1 [28.1 kB]
115s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 zip amd64 3.0-14ubuntu2 [185 kB]
115s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB]
115s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
116s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-base-core amd64 4.4.2-1build1 [28.9 MB]
117s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB]
117s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 littler all 0.3.20-2 [2554 B]
117s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-cli amd64 3.6.3-1 [1348 kB]
117s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB]
117s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rlang amd64 1.1.5-1 [1719 kB]
117s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
117s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
117s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
117s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mass amd64 7.3-64-1 [1114 kB]
117s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB]
117s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB]
118s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-matrix amd64 1.7-2-1 [4456 kB]
118s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB]
118s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB]
118s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
118s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB]
118s Get:89 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB]
118s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB]
118s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
118s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB]
118s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-scales all 1.3.0-1 [603 kB]
118s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB]
118s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
118s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
118s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
118s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
118s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
118s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB]
118s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB]
118s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB]
119s Get:103 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB]
119s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
119s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB]
119s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB]
119s Get:107 http://ftpmaster.internal/ubuntu plucky/universe amd64 r-cran-reshape all 0.8.9-1 [168 kB]
119s Get:108 http://ftpmaster.internal/ubuntu plucky/universe amd64 tex-common all 6.18 [32.8 kB]
119s Get:109 http://ftpmaster.internal/ubuntu plucky/main amd64 t1utils amd64 1.41-4build3 [61.3 kB]
119s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-5build2 [9799 kB]
120s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-base all 2024.20241115-1 [22.5 MB]
120s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 texlive-latex-base all 2024.20241115-1 [1260 kB]
121s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 nanook all 1.33+dfsg-6 [195 kB]
121s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 nanook-examples all 1.33+dfsg-6 [1814 kB]
121s Preconfiguring packages ...
121s Fetched 168 MB in 11s (15.5 MB/s)
121s Selecting previously unselected package ca-certificates-java.
121s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 108975 files and directories currently installed.)
121s Preparing to unpack .../000-ca-certificates-java_20240118_all.deb ...
121s Unpacking ca-certificates-java (20240118) ...
121s Selecting previously unselected package java-common.
121s Preparing to unpack .../001-java-common_0.76_all.deb ...
121s Unpacking java-common (0.76) ...
121s Selecting previously unselected package liblcms2-2:amd64.
121s Preparing to unpack .../002-liblcms2-2_2.16-2_amd64.deb ...
121s Unpacking liblcms2-2:amd64 (2.16-2) ...
121s Selecting previously unselected package libjpeg-turbo8:amd64.
121s Preparing to unpack .../003-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ...
121s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
121s Selecting previously unselected package libjpeg8:amd64.
121s Preparing to unpack .../004-libjpeg8_8c-2ubuntu11_amd64.deb ...
121s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
121s Selecting previously unselected package libpcsclite1:amd64.
121s Preparing to unpack .../005-libpcsclite1_2.3.1-1_amd64.deb ...
121s Unpacking libpcsclite1:amd64 (2.3.1-1) ...
122s Selecting previously unselected package openjdk-21-jre-headless:amd64.
122s Preparing to unpack .../006-openjdk-21-jre-headless_21.0.6+7-1_amd64.deb ...
122s Unpacking openjdk-21-jre-headless:amd64 (21.0.6+7-1) ...
122s Selecting previously unselected package default-jre-headless.
122s Preparing to unpack .../007-default-jre-headless_2%3a1.21-76_amd64.deb ...
122s Unpacking default-jre-headless (2:1.21-76) ...
122s Selecting previously unselected package fonts-dejavu-mono.
122s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ...
122s Unpacking fonts-dejavu-mono (2.37-8) ...
122s Selecting previously unselected package fonts-dejavu-core.
122s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ...
122s Unpacking fonts-dejavu-core (2.37-8) ...
122s Selecting previously unselected package fontconfig-config.
123s Preparing to unpack .../010-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ...
123s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
123s Selecting previously unselected package libfontconfig1:amd64.
123s Preparing to unpack .../011-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ...
123s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ...
123s Selecting previously unselected package fontconfig.
123s Preparing to unpack .../012-fontconfig_2.15.0-2ubuntu1_amd64.deb ...
123s Unpacking fontconfig (2.15.0-2ubuntu1) ...
123s Selecting previously unselected package fonts-lmodern.
123s Preparing to unpack .../013-fonts-lmodern_2.005-1_all.deb ...
123s Unpacking fonts-lmodern (2.005-1) ...
123s Selecting previously unselected package libaec0:amd64.
123s Preparing to unpack .../014-libaec0_1.1.3-1_amd64.deb ...
123s Unpacking libaec0:amd64 (1.1.3-1) ...
123s Selecting previously unselected package libsz2:amd64.
123s Preparing to unpack .../015-libsz2_1.1.3-1_amd64.deb ...
123s Unpacking libsz2:amd64 (1.1.3-1) ...
123s Selecting previously unselected package libhdf5-310:amd64.
123s Preparing to unpack .../016-libhdf5-310_1.14.5+repack-3_amd64.deb ...
123s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ...
123s Selecting previously unselected package libhdf5-hl-310:amd64.
123s Preparing to unpack .../017-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ...
123s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ...
123s Selecting previously unselected package hdf5-tools.
123s Preparing to unpack .../018-hdf5-tools_1.14.5+repack-3_amd64.deb ...
123s Unpacking hdf5-tools (1.14.5+repack-3) ...
123s Selecting previously unselected package last-align.
123s Preparing to unpack .../019-last-align_1609-1_amd64.deb ...
123s Unpacking last-align (1609-1) ...
123s Selecting previously unselected package libapache-pom-java.
123s Preparing to unpack .../020-libapache-pom-java_33-2_all.deb ...
123s Unpacking libapache-pom-java (33-2) ...
123s Selecting previously unselected package libblas3:amd64.
123s Preparing to unpack .../021-libblas3_3.12.1-2_amd64.deb ...
123s Unpacking libblas3:amd64 (3.12.1-2) ...
123s Selecting previously unselected package libpixman-1-0:amd64.
123s Preparing to unpack .../022-libpixman-1-0_0.44.0-3_amd64.deb ...
123s Unpacking libpixman-1-0:amd64 (0.44.0-3) ...
123s Selecting previously unselected package libxcb-render0:amd64.
123s Preparing to unpack .../023-libxcb-render0_1.17.0-2_amd64.deb ...
123s Unpacking libxcb-render0:amd64 (1.17.0-2) ...
123s Selecting previously unselected package libxcb-shm0:amd64.
123s Preparing to unpack .../024-libxcb-shm0_1.17.0-2_amd64.deb ...
123s Unpacking libxcb-shm0:amd64 (1.17.0-2) ...
123s Selecting previously unselected package libxrender1:amd64.
123s Preparing to unpack .../025-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ...
123s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ...
123s Selecting previously unselected package libcairo2:amd64.
123s Preparing to unpack .../026-libcairo2_1.18.2-2_amd64.deb ...
123s Unpacking libcairo2:amd64 (1.18.2-2) ...
123s Selecting previously unselected package libcommons-parent-java.
123s Preparing to unpack .../027-libcommons-parent-java_56-1_all.deb ...
123s Unpacking libcommons-parent-java (56-1) ...
123s Selecting previously unselected package libcommons-io-java.
123s Preparing to unpack .../028-libcommons-io-java_2.18.0-1_all.deb ...
123s Unpacking libcommons-io-java (2.18.0-1) ...
123s Selecting previously unselected package libdatrie1:amd64.
123s Preparing to unpack .../029-libdatrie1_0.2.13-3build1_amd64.deb ...
123s Unpacking libdatrie1:amd64 (0.2.13-3build1) ...
123s Selecting previously unselected package libdeflate0:amd64.
123s Preparing to unpack .../030-libdeflate0_1.23-1_amd64.deb ...
123s Unpacking libdeflate0:amd64 (1.23-1) ...
124s Selecting previously unselected package libgfortran5:amd64.
124s Preparing to unpack .../031-libgfortran5_15-20250213-1ubuntu1_amd64.deb ...
124s Unpacking libgfortran5:amd64 (15-20250213-1ubuntu1) ...
124s Selecting previously unselected package libgomp1:amd64.
124s Preparing to unpack .../032-libgomp1_15-20250213-1ubuntu1_amd64.deb ...
124s Unpacking libgomp1:amd64 (15-20250213-1ubuntu1) ...
124s Selecting previously unselected package libgraphite2-3:amd64.
124s Preparing to unpack .../033-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ...
124s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
124s Selecting previously unselected package libharfbuzz0b:amd64.
124s Preparing to unpack .../034-libharfbuzz0b_10.2.0-1_amd64.deb ...
124s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ...
124s Selecting previously unselected package x11-common.
124s Preparing to unpack .../035-x11-common_1%3a7.7+23ubuntu3_all.deb ...
124s Unpacking x11-common (1:7.7+23ubuntu3) ...
124s Selecting previously unselected package libice6:amd64.
124s Preparing to unpack .../036-libice6_2%3a1.1.1-1_amd64.deb ...
124s Unpacking libice6:amd64 (2:1.1.1-1) ...
124s Selecting previously unselected package libkpathsea6:amd64.
124s Preparing to unpack .../037-libkpathsea6_2024.20240313.70630+ds-5build2_amd64.deb ...
124s Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-5build2) ...
124s Selecting previously unselected package liblapack3:amd64.
124s Preparing to unpack .../038-liblapack3_3.12.1-2_amd64.deb ...
124s Unpacking liblapack3:amd64 (3.12.1-2) ...
124s Selecting previously unselected package liblerc4:amd64.
124s Preparing to unpack .../039-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ...
124s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
124s Selecting previously unselected package libmpfi0:amd64.
124s Preparing to unpack .../040-libmpfi0_1.5.4+ds-4_amd64.deb ...
124s Unpacking libmpfi0:amd64 (1.5.4+ds-4) ...
124s Selecting previously unselected package libthai-data.
124s Preparing to unpack .../041-libthai-data_0.1.29-2build1_all.deb ...
124s Unpacking libthai-data (0.1.29-2build1) ...
124s Selecting previously unselected package libthai0:amd64.
124s Preparing to unpack .../042-libthai0_0.1.29-2build1_amd64.deb ...
124s Unpacking libthai0:amd64 (0.1.29-2build1) ...
124s Selecting previously unselected package libpango-1.0-0:amd64.
124s Preparing to unpack .../043-libpango-1.0-0_1.56.1-1_amd64.deb ...
124s Unpacking libpango-1.0-0:amd64 (1.56.1-1) ...
124s Selecting previously unselected package libpangoft2-1.0-0:amd64.
124s Preparing to unpack .../044-libpangoft2-1.0-0_1.56.1-1_amd64.deb ...
124s Unpacking libpangoft2-1.0-0:amd64 (1.56.1-1) ...
124s Selecting previously unselected package libpangocairo-1.0-0:amd64.
124s Preparing to unpack .../045-libpangocairo-1.0-0_1.56.1-1_amd64.deb ...
124s Unpacking libpangocairo-1.0-0:amd64 (1.56.1-1) ...
124s Selecting previously unselected package libpaper2:amd64.
124s Preparing to unpack .../046-libpaper2_2.2.5-0.3_amd64.deb ...
124s Unpacking libpaper2:amd64 (2.2.5-0.3) ...
124s Selecting previously unselected package libpaper-utils.
124s Preparing to unpack .../047-libpaper-utils_2.2.5-0.3_amd64.deb ...
124s Unpacking libpaper-utils (2.2.5-0.3) ...
124s Selecting previously unselected package libpotrace0:amd64.
124s Preparing to unpack .../048-libpotrace0_1.16-2build1_amd64.deb ...
124s Unpacking libpotrace0:amd64 (1.16-2build1) ...
124s Selecting previously unselected package libptexenc1:amd64.
124s Preparing to unpack .../049-libptexenc1_2024.20240313.70630+ds-5build2_amd64.deb ...
124s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-5build2) ...
124s Selecting previously unselected package libsharpyuv0:amd64.
124s Preparing to unpack .../050-libsharpyuv0_1.5.0-0.1_amd64.deb ...
124s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ...
124s Selecting previously unselected package libsm6:amd64.
124s Preparing to unpack .../051-libsm6_2%3a1.2.4-1_amd64.deb ...
124s Unpacking libsm6:amd64 (2:1.2.4-1) ...
124s Selecting previously unselected package libsynctex2:amd64.
124s Preparing to unpack .../052-libsynctex2_2024.20240313.70630+ds-5build2_amd64.deb ...
124s Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-5build2) ...
124s Selecting previously unselected package libtcl8.6:amd64.
124s Preparing to unpack .../053-libtcl8.6_8.6.16+dfsg-1_amd64.deb ...
124s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ...
124s Selecting previously unselected package libteckit0:amd64.
124s Preparing to unpack .../054-libteckit0_2.5.12+ds1-1_amd64.deb ...
124s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ...
124s Selecting previously unselected package libtexlua53-5:amd64.
124s Preparing to unpack .../055-libtexlua53-5_2024.20240313.70630+ds-5build2_amd64.deb ...
124s Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-5build2) ...
124s Selecting previously unselected package libjbig0:amd64.
124s Preparing to unpack .../056-libjbig0_2.1-6.1ubuntu2_amd64.deb ...
124s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ...
124s Selecting previously unselected package libwebp7:amd64.
124s Preparing to unpack .../057-libwebp7_1.5.0-0.1_amd64.deb ...
124s Unpacking libwebp7:amd64 (1.5.0-0.1) ...
124s Selecting previously unselected package libtiff6:amd64.
124s Preparing to unpack .../058-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ...
124s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ...
124s Selecting previously unselected package libxft2:amd64.
124s Preparing to unpack .../059-libxft2_2.3.6-1build1_amd64.deb ...
124s Unpacking libxft2:amd64 (2.3.6-1build1) ...
125s Selecting previously unselected package libxss1:amd64.
125s Preparing to unpack .../060-libxss1_1%3a1.2.3-1build3_amd64.deb ...
125s Unpacking libxss1:amd64 (1:1.2.3-1build3) ...
125s Selecting previously unselected package libtk8.6:amd64.
125s Preparing to unpack .../061-libtk8.6_8.6.16-1_amd64.deb ...
125s Unpacking libtk8.6:amd64 (8.6.16-1) ...
125s Selecting previously unselected package libxt6t64:amd64.
125s Preparing to unpack .../062-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ...
125s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ...
125s Selecting previously unselected package libxmu6:amd64.
125s Preparing to unpack .../063-libxmu6_2%3a1.1.3-3build2_amd64.deb ...
125s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ...
125s Selecting previously unselected package libxpm4:amd64.
125s Preparing to unpack .../064-libxpm4_1%3a3.5.17-1build2_amd64.deb ...
125s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ...
125s Selecting previously unselected package libxaw7:amd64.
125s Preparing to unpack .../065-libxaw7_2%3a1.0.16-1_amd64.deb ...
125s Unpacking libxaw7:amd64 (2:1.0.16-1) ...
125s Selecting previously unselected package libxi6:amd64.
125s Preparing to unpack .../066-libxi6_2%3a1.8.2-1_amd64.deb ...
125s Unpacking libxi6:amd64 (2:1.8.2-1) ...
125s Selecting previously unselected package libzzip-0-13t64:amd64.
125s Preparing to unpack .../067-libzzip-0-13t64_0.13.72+dfsg.1-1.2build1_amd64.deb ...
125s Unpacking libzzip-0-13t64:amd64 (0.13.72+dfsg.1-1.2build1) ...
125s Selecting previously unselected package zip.
125s Preparing to unpack .../068-zip_3.0-14ubuntu2_amd64.deb ...
125s Unpacking zip (3.0-14ubuntu2) ...
125s Selecting previously unselected package unzip.
125s Preparing to unpack .../069-unzip_6.0-28ubuntu6_amd64.deb ...
125s Unpacking unzip (6.0-28ubuntu6) ...
125s Selecting previously unselected package xdg-utils.
125s Preparing to unpack .../070-xdg-utils_1.2.1-2ubuntu1_all.deb ...
125s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
125s Selecting previously unselected package r-base-core.
125s Preparing to unpack .../071-r-base-core_4.4.2-1build1_amd64.deb ...
125s Unpacking r-base-core (4.4.2-1build1) ...
125s Selecting previously unselected package r-cran-littler.
125s Preparing to unpack .../072-r-cran-littler_0.3.20-2_amd64.deb ...
125s Unpacking r-cran-littler (0.3.20-2) ...
125s Selecting previously unselected package littler.
125s Preparing to unpack .../073-littler_0.3.20-2_all.deb ...
125s Unpacking littler (0.3.20-2) ...
125s Selecting previously unselected package r-cran-cli.
125s Preparing to unpack .../074-r-cran-cli_3.6.3-1_amd64.deb ...
125s Unpacking r-cran-cli (3.6.3-1) ...
125s Selecting previously unselected package r-cran-glue.
126s Preparing to unpack .../075-r-cran-glue_1.8.0-1_amd64.deb ...
126s Unpacking r-cran-glue (1.8.0-1) ...
126s Selecting previously unselected package r-cran-rlang.
126s Preparing to unpack .../076-r-cran-rlang_1.1.5-1_amd64.deb ...
126s Unpacking r-cran-rlang (1.1.5-1) ...
126s Selecting previously unselected package r-cran-lifecycle.
126s Preparing to unpack .../077-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
126s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
126s Selecting previously unselected package r-cran-gtable.
126s Preparing to unpack .../078-r-cran-gtable_0.3.6+dfsg-1_all.deb ...
126s Unpacking r-cran-gtable (0.3.6+dfsg-1) ...
126s Selecting previously unselected package r-cran-isoband.
126s Preparing to unpack .../079-r-cran-isoband_0.2.7-1_amd64.deb ...
126s Unpacking r-cran-isoband (0.2.7-1) ...
126s Selecting previously unselected package r-cran-mass.
126s Preparing to unpack .../080-r-cran-mass_7.3-64-1_amd64.deb ...
126s Unpacking r-cran-mass (7.3-64-1) ...
126s Selecting previously unselected package r-cran-lattice.
126s Preparing to unpack .../081-r-cran-lattice_0.22-6-1_amd64.deb ...
126s Unpacking r-cran-lattice (0.22-6-1) ...
126s Selecting previously unselected package r-cran-nlme.
126s Preparing to unpack .../082-r-cran-nlme_3.1.167-1_amd64.deb ...
126s Unpacking r-cran-nlme (3.1.167-1) ...
126s Selecting previously unselected package r-cran-matrix.
126s Preparing to unpack .../083-r-cran-matrix_1.7-2-1_amd64.deb ...
126s Unpacking r-cran-matrix (1.7-2-1) ...
126s Selecting previously unselected package r-cran-mgcv.
126s Preparing to unpack .../084-r-cran-mgcv_1.9-1-1_amd64.deb ...
126s Unpacking r-cran-mgcv (1.9-1-1) ...
126s Selecting previously unselected package r-cran-farver.
126s Preparing to unpack .../085-r-cran-farver_2.1.2-1_amd64.deb ...
126s Unpacking r-cran-farver (2.1.2-1) ...
126s Selecting previously unselected package r-cran-labeling.
126s Preparing to unpack .../086-r-cran-labeling_0.4.3-1_all.deb ...
126s Unpacking r-cran-labeling (0.4.3-1) ...
126s Selecting previously unselected package r-cran-colorspace.
126s Preparing to unpack .../087-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ...
126s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ...
126s Selecting previously unselected package r-cran-munsell.
126s Preparing to unpack .../088-r-cran-munsell_0.5.1-1_all.deb ...
126s Unpacking r-cran-munsell (0.5.1-1) ...
126s Selecting previously unselected package r-cran-r6.
126s Preparing to unpack .../089-r-cran-r6_2.5.1-1_all.deb ...
126s Unpacking r-cran-r6 (2.5.1-1) ...
126s Selecting previously unselected package r-cran-rcolorbrewer.
126s Preparing to unpack .../090-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
126s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
126s Selecting previously unselected package r-cran-viridislite.
126s Preparing to unpack .../091-r-cran-viridislite_0.4.2-2_all.deb ...
126s Unpacking r-cran-viridislite (0.4.2-2) ...
126s Selecting previously unselected package r-cran-scales.
126s Preparing to unpack .../092-r-cran-scales_1.3.0-1_all.deb ...
126s Unpacking r-cran-scales (1.3.0-1) ...
126s Selecting previously unselected package r-cran-fansi.
126s Preparing to unpack .../093-r-cran-fansi_1.0.5-1_amd64.deb ...
126s Unpacking r-cran-fansi (1.0.5-1) ...
126s Selecting previously unselected package r-cran-magrittr.
126s Preparing to unpack .../094-r-cran-magrittr_2.0.3-1_amd64.deb ...
126s Unpacking r-cran-magrittr (2.0.3-1) ...
126s Selecting previously unselected package r-cran-utf8.
126s Preparing to unpack .../095-r-cran-utf8_1.2.4-1_amd64.deb ...
126s Unpacking r-cran-utf8 (1.2.4-1) ...
126s Selecting previously unselected package r-cran-vctrs.
126s Preparing to unpack .../096-r-cran-vctrs_0.6.5-1_amd64.deb ...
126s Unpacking r-cran-vctrs (0.6.5-1) ...
127s Selecting previously unselected package r-cran-pillar.
127s Preparing to unpack .../097-r-cran-pillar_1.10.1+dfsg-1_all.deb ...
127s Unpacking r-cran-pillar (1.10.1+dfsg-1) ...
127s Selecting previously unselected package r-cran-pkgconfig.
127s Preparing to unpack .../098-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
127s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
127s Selecting previously unselected package r-cran-tibble.
127s Preparing to unpack .../099-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ...
127s Unpacking r-cran-tibble (3.2.1+dfsg-3) ...
127s Selecting previously unselected package r-cran-withr.
127s Preparing to unpack .../100-r-cran-withr_3.0.2+dfsg-1_all.deb ...
127s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
127s Selecting previously unselected package r-cran-ggplot2.
127s Preparing to unpack .../101-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ...
127s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ...
127s Selecting previously unselected package r-cran-gridextra.
127s Preparing to unpack .../102-r-cran-gridextra_2.3-3build1_all.deb ...
127s Unpacking r-cran-gridextra (2.3-3build1) ...
127s Selecting previously unselected package r-cran-pkgkitten.
127s Preparing to unpack .../103-r-cran-pkgkitten_0.2.4-1_all.deb ...
127s Unpacking r-cran-pkgkitten (0.2.4-1) ...
127s Selecting previously unselected package r-cran-rcpp.
127s Preparing to unpack .../104-r-cran-rcpp_1.0.14-1_amd64.deb ...
127s Unpacking r-cran-rcpp (1.0.14-1) ...
127s Selecting previously unselected package r-cran-plyr.
127s Preparing to unpack .../105-r-cran-plyr_1.8.9-1_amd64.deb ...
127s Unpacking r-cran-plyr (1.8.9-1) ...
127s Selecting previously unselected package r-cran-reshape.
127s Preparing to unpack .../106-r-cran-reshape_0.8.9-1_all.deb ...
127s Unpacking r-cran-reshape (0.8.9-1) ...
127s Selecting previously unselected package tex-common.
127s Preparing to unpack .../107-tex-common_6.18_all.deb ...
127s Unpacking tex-common (6.18) ...
127s Selecting previously unselected package t1utils.
127s Preparing to unpack .../108-t1utils_1.41-4build3_amd64.deb ...
127s Unpacking t1utils (1.41-4build3) ...
127s Selecting previously unselected package texlive-binaries.
127s Preparing to unpack .../109-texlive-binaries_2024.20240313.70630+ds-5build2_amd64.deb ...
127s Unpacking texlive-binaries (2024.20240313.70630+ds-5build2) ...
128s Selecting previously unselected package texlive-base.
128s Preparing to unpack .../110-texlive-base_2024.20241115-1_all.deb ...
128s Unpacking texlive-base (2024.20241115-1) ...
128s Selecting previously unselected package texlive-latex-base.
129s Preparing to unpack .../111-texlive-latex-base_2024.20241115-1_all.deb ...
129s Unpacking texlive-latex-base (2024.20241115-1) ...
129s Selecting previously unselected package nanook.
129s Preparing to unpack .../112-nanook_1.33+dfsg-6_all.deb ...
129s Unpacking nanook (1.33+dfsg-6) ...
129s Selecting previously unselected package nanook-examples.
129s Preparing to unpack .../113-nanook-examples_1.33+dfsg-6_all.deb ...
129s Unpacking nanook-examples (1.33+dfsg-6) ...
129s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
129s Setting up liblcms2-2:amd64 (2.16-2) ...
129s Setting up libpixman-1-0:amd64 (0.44.0-3) ...
129s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ...
129s Setting up nanook-examples (1.33+dfsg-6) ...
129s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
129s Setting up libxpm4:amd64 (1:3.5.17-1build2) ...
129s Setting up libxi6:amd64 (2:1.8.2-1) ...
129s Setting up java-common (0.76) ...
129s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ...
129s Setting up libdatrie1:amd64 (0.2.13-3build1) ...
129s Setting up libxcb-render0:amd64 (1.17.0-2) ...
129s Setting up unzip (6.0-28ubuntu6) ...
129s Setting up x11-common (1:7.7+23ubuntu3) ...
129s Setting up libdeflate0:amd64 (1.23-1) ...
129s Setting up libxcb-shm0:amd64 (1.17.0-2) ...
129s Setting up libgomp1:amd64 (15-20250213-1ubuntu1) ...
129s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ...
129s Setting up libaec0:amd64 (1.1.3-1) ...
129s Setting up last-align (1609-1) ...
129s Setting up tex-common (6.18) ...
129s update-language: texlive-base not installed and configured, doing nothing!
130s Setting up zip (3.0-14ubuntu2) ...
130s Setting up libblas3:amd64 (3.12.1-2) ...
130s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
130s Setting up libzzip-0-13t64:amd64 (0.13.72+dfsg.1-1.2build1) ...
130s Setting up libteckit0:amd64 (2.5.12+ds1-1) ...
130s Setting up libapache-pom-java (33-2) ...
130s Setting up t1utils (1.41-4build3) ...
130s Setting up libtexlua53-5:amd64 (2024.20240313.70630+ds-5build2) ...
130s Setting up fonts-dejavu-mono (2.37-8) ...
130s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ...
130s Setting up libmpfi0:amd64 (1.5.4+ds-4) ...
130s Setting up fonts-dejavu-core (2.37-8) ...
130s Setting up libpcsclite1:amd64 (2.3.1-1) ...
130s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
130s Setting up libkpathsea6:amd64 (2024.20240313.70630+ds-5build2) ...
130s Setting up libgfortran5:amd64 (15-20250213-1ubuntu1) ...
130s Setting up libwebp7:amd64 (1.5.0-0.1) ...
130s Setting up fonts-lmodern (2.005-1) ...
130s Setting up libharfbuzz0b:amd64 (10.2.0-1) ...
130s Setting up libthai-data (0.1.29-2build1) ...
130s Setting up libxss1:amd64 (1:1.2.3-1build3) ...
130s Setting up libpaper2:amd64 (2.2.5-0.3) ...
130s Setting up ca-certificates-java (20240118) ...
130s No JRE found. Skipping Java certificates setup.
130s Setting up xdg-utils (1.2.1-2ubuntu1) ...
130s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
130s Setting up libsz2:amd64 (1.1.3-1) ...
130s Setting up libsynctex2:amd64 (2024.20240313.70630+ds-5build2) ...
130s Setting up libpotrace0:amd64 (1.16-2build1) ...
130s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
130s Setting up libice6:amd64 (2:1.1.1-1) ...
130s Setting up liblapack3:amd64 (3.12.1-2) ...
130s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
130s Setting up openjdk-21-jre-headless:amd64 (21.0.6+7-1) ...
130s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode
130s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode
130s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
130s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
130s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
130s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
130s Setting up libcommons-parent-java (56-1) ...
130s Setting up libpaper-utils (2.2.5-0.3) ...
130s Setting up libthai0:amd64 (0.1.29-2build1) ...
130s Setting up libptexenc1:amd64 (2024.20240313.70630+ds-5build2) ...
130s Setting up libhdf5-310:amd64 (1.14.5+repack-3) ...
130s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ...
130s Setting up libfontconfig1:amd64 (2.15.0-2ubuntu1) ...
130s Setting up libsm6:amd64 (2:1.2.4-1) ...
130s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ...
130s Setting up fontconfig (2.15.0-2ubuntu1) ...
132s Regenerating fonts cache... done.
132s Setting up libxft2:amd64 (2.3.6-1build1) ...
132s Setting up libcommons-io-java (2.18.0-1) ...
132s Setting up libtk8.6:amd64 (8.6.16-1) ...
132s Setting up libpango-1.0-0:amd64 (1.56.1-1) ...
132s Setting up libcairo2:amd64 (1.18.2-2) ...
132s Setting up hdf5-tools (1.14.5+repack-3) ...
132s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ...
132s Setting up libpangoft2-1.0-0:amd64 (1.56.1-1) ...
132s Setting up libpangocairo-1.0-0:amd64 (1.56.1-1) ...
132s Setting up libxmu6:amd64 (2:1.1.3-3build2) ...
132s Setting up libxaw7:amd64 (2:1.0.16-1) ...
132s Setting up r-base-core (4.4.2-1build1) ...
132s Creating config file /etc/R/Renviron with new version
132s Setting up r-cran-labeling (0.4.3-1) ...
132s Setting up r-cran-lattice (0.22-6-1) ...
132s Setting up r-cran-nlme (3.1.167-1) ...
132s Setting up r-cran-farver (2.1.2-1) ...
132s Setting up r-cran-viridislite (0.4.2-2) ...
132s Setting up texlive-binaries (2024.20240313.70630+ds-5build2) ...
132s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
132s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
132s Setting up r-cran-r6 (2.5.1-1) ...
132s Setting up r-cran-pkgkitten (0.2.4-1) ...
132s Setting up texlive-base (2024.20241115-1) ...
133s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
133s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
133s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
133s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
134s Setting up r-cran-magrittr (2.0.3-1) ...
134s Setting up r-cran-littler (0.3.20-2) ...
134s Setting up r-cran-rcpp (1.0.14-1) ...
134s Setting up r-cran-rlang (1.1.5-1) ...
134s Setting up littler (0.3.20-2) ...
134s Setting up r-cran-withr (3.0.2+dfsg-1) ...
134s Setting up r-cran-fansi (1.0.5-1) ...
134s Setting up r-cran-mass (7.3-64-1) ...
134s Setting up r-cran-glue (1.8.0-1) ...
134s Setting up r-cran-cli (3.6.3-1) ...
134s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
134s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
134s Setting up r-cran-utf8 (1.2.4-1) ...
134s Setting up r-cran-colorspace (2.1-1+dfsg-1) ...
134s Setting up texlive-latex-base (2024.20241115-1) ...
134s Setting up r-cran-plyr (1.8.9-1) ...
134s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
134s Setting up r-cran-isoband (0.2.7-1) ...
134s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
134s Setting up r-cran-matrix (1.7-2-1) ...
134s Setting up r-cran-mgcv (1.9-1-1) ...
134s Setting up r-cran-vctrs (0.6.5-1) ...
134s Setting up r-cran-pillar (1.10.1+dfsg-1) ...
134s Setting up r-cran-reshape (0.8.9-1) ...
134s Setting up r-cran-munsell (0.5.1-1) ...
134s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
134s Setting up r-cran-gridextra (2.3-3build1) ...
134s Setting up r-cran-scales (1.3.0-1) ...
134s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
134s Processing triggers for libc-bin (2.40-4ubuntu1) ...
134s Processing triggers for man-db (2.13.0-1) ...
135s Processing triggers for install-info (7.1.1-1) ...
135s Processing triggers for ca-certificates-java (20240118) ...
136s Adding debian:ACCVRAIZ1.pem
136s Adding debian:AC_RAIZ_FNMT-RCM.pem
136s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
136s Adding debian:ANF_Secure_Server_Root_CA.pem
136s Adding debian:Actalis_Authentication_Root_CA.pem
136s Adding debian:AffirmTrust_Commercial.pem
136s Adding debian:AffirmTrust_Networking.pem
136s Adding debian:AffirmTrust_Premium.pem
136s Adding debian:AffirmTrust_Premium_ECC.pem
136s Adding debian:Amazon_Root_CA_1.pem
136s Adding debian:Amazon_Root_CA_2.pem
136s Adding debian:Amazon_Root_CA_3.pem
136s Adding debian:Amazon_Root_CA_4.pem
136s Adding debian:Atos_TrustedRoot_2011.pem
136s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem
136s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem
136s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
136s Adding debian:BJCA_Global_Root_CA1.pem
136s Adding debian:BJCA_Global_Root_CA2.pem
136s Adding debian:Baltimore_CyberTrust_Root.pem
136s Adding debian:Buypass_Class_2_Root_CA.pem
136s Adding debian:Buypass_Class_3_Root_CA.pem
136s Adding debian:CA_Disig_Root_R2.pem
136s Adding debian:CFCA_EV_ROOT.pem
136s Adding debian:COMODO_Certification_Authority.pem
136s Adding debian:COMODO_ECC_Certification_Authority.pem
136s Adding debian:COMODO_RSA_Certification_Authority.pem
136s Adding debian:Certainly_Root_E1.pem
136s Adding debian:Certainly_Root_R1.pem
136s Adding debian:Certigna.pem
136s Adding debian:Certigna_Root_CA.pem
136s Adding debian:Certum_EC-384_CA.pem
136s Adding debian:Certum_Trusted_Network_CA.pem
136s Adding debian:Certum_Trusted_Network_CA_2.pem
136s Adding debian:Certum_Trusted_Root_CA.pem
136s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem
136s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem
136s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem
136s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem
136s Adding debian:Comodo_AAA_Services_root.pem
136s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem
136s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem
136s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
136s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
136s Adding debian:DigiCert_Assured_ID_Root_CA.pem
136s Adding debian:DigiCert_Assured_ID_Root_G2.pem
136s Adding debian:DigiCert_Assured_ID_Root_G3.pem
136s Adding debian:DigiCert_Global_Root_CA.pem
136s Adding debian:DigiCert_Global_Root_G2.pem
136s Adding debian:DigiCert_Global_Root_G3.pem
136s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
136s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem
136s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem
136s Adding debian:DigiCert_Trusted_Root_G4.pem
136s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
136s Adding debian:Entrust_Root_Certification_Authority.pem
136s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
136s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
136s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
136s Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem
136s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
136s Adding debian:GLOBALTRUST_2020.pem
136s Adding debian:GTS_Root_R1.pem
136s Adding debian:GTS_Root_R2.pem
136s Adding debian:GTS_Root_R3.pem
136s Adding debian:GTS_Root_R4.pem
136s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
136s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
136s Adding debian:GlobalSign_Root_CA.pem
136s Adding debian:GlobalSign_Root_CA_-_R3.pem
136s Adding debian:GlobalSign_Root_CA_-_R6.pem
136s Adding debian:GlobalSign_Root_E46.pem
136s Adding debian:GlobalSign_Root_R46.pem
136s Adding debian:Go_Daddy_Class_2_CA.pem
136s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
136s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem
136s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem
136s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
136s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
136s Adding debian:HiPKI_Root_CA_-_G1.pem
136s Adding debian:Hongkong_Post_Root_CA_3.pem
136s Adding debian:ISRG_Root_X1.pem
136s Adding debian:ISRG_Root_X2.pem
136s Adding debian:IdenTrust_Commercial_Root_CA_1.pem
136s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
136s Adding debian:Izenpe.com.pem
136s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
136s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
136s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
136s Adding debian:NAVER_Global_Root_Certification_Authority.pem
136s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
136s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
136s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
136s Adding debian:QuoVadis_Root_CA_1_G3.pem
136s Adding debian:QuoVadis_Root_CA_2.pem
136s Adding debian:QuoVadis_Root_CA_2_G3.pem
136s Adding debian:QuoVadis_Root_CA_3.pem
136s Adding debian:QuoVadis_Root_CA_3_G3.pem
136s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
136s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
136s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
136s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
136s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem
136s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem
136s Adding debian:SZAFIR_ROOT_CA2.pem
136s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem
136s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem
136s Adding debian:SecureSign_RootCA11.pem
136s Adding debian:SecureSign_Root_CA12.pem
136s Adding debian:SecureSign_Root_CA14.pem
136s Adding debian:SecureSign_Root_CA15.pem
136s Adding debian:SecureTrust_CA.pem
136s Adding debian:Secure_Global_CA.pem
136s Adding debian:Security_Communication_ECC_RootCA1.pem
136s Adding debian:Security_Communication_RootCA2.pem
136s Adding debian:Security_Communication_RootCA3.pem
136s Adding debian:Starfield_Class_2_CA.pem
136s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
136s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
136s Adding debian:SwissSign_Gold_CA_-_G2.pem
136s Adding debian:SwissSign_Silver_CA_-_G2.pem
136s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
136s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
136s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
136s Adding debian:TWCA_CYBER_Root_CA.pem
136s Adding debian:TWCA_Global_Root_CA.pem
136s Adding debian:TWCA_Root_Certification_Authority.pem
136s Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem
136s Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem
136s Adding debian:TeliaSonera_Root_CA_v1.pem
136s Adding debian:Telia_Root_CA_v2.pem
136s Adding debian:TrustAsia_Global_Root_CA_G3.pem
136s Adding debian:TrustAsia_Global_Root_CA_G4.pem
136s Adding debian:Trustwave_Global_Certification_Authority.pem
136s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
136s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
136s Adding debian:TunTrust_Root_CA.pem
136s Adding debian:UCA_Extended_Validation_Root.pem
136s Adding debian:UCA_Global_G2_Root.pem
136s Adding debian:USERTrust_ECC_Certification_Authority.pem
136s Adding debian:USERTrust_RSA_Certification_Authority.pem
136s Adding debian:XRamp_Global_CA_Root.pem
136s Adding debian:certSIGN_ROOT_CA.pem
136s Adding debian:certSIGN_Root_CA_G2.pem
136s Adding debian:e-Szigno_Root_CA_2017.pem
136s Adding debian:ePKI_Root_Certification_Authority.pem
136s Adding debian:emSign_ECC_Root_CA_-_C3.pem
136s Adding debian:emSign_ECC_Root_CA_-_G3.pem
136s Adding debian:emSign_Root_CA_-_C1.pem
136s Adding debian:emSign_Root_CA_-_G1.pem
136s Adding debian:vTrus_ECC_Root_CA.pem
136s Adding debian:vTrus_Root_CA.pem
136s done.
136s Setting up default-jre-headless (2:1.21-76) ...
136s Setting up nanook (1.33+dfsg-6) ...
136s Processing triggers for tex-common (6.18) ...
137s Running updmap-sys. This may take some time... done.
137s Running mktexlsr /var/lib/texmf ... done.
137s Building format(s) --all.
157s 	This may take some time... done.
159s autopkgtest [11:45:27]: testbed environment configured for cross-architecture building
159s autopkgtest [11:45:27]: test run-unit-test: [-----------------------
165s 
165s NanoOK v1.33
165s 
165s Comments/bugs to: richard.leggett@earlham.ac.uk
165s Follow NanoOK on twitter: @NanoOK_Software
165s 
165s Scripts dir: /usr/share/nanook/bin
165s 
165s Checking dependencies
165s *** ERROR: Couldn't find Rscript - is R installed? ***
165s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian)
165s h5dump: Version 1.14.5
165s 
165s Making directory /tmp/autopkgtest.axigHr/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/fasta
165s Checking FAST5 directory structure...
165s   Using pass/fail dirs: yes
165s       Using batch dirs: no
165s         Using barcodes: no
165s 
168s 
Processing [                                                  ] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
Processing [==================================================] 1/1
168s 
168s DONE
168s 
168s NanoOK v1.33
168s 
168s Comments/bugs to: richard.leggett@earlham.ac.uk
168s Follow NanoOK on twitter: @NanoOK_Software
168s 
168s Scripts dir: /usr/share/nanook/bin
168s 
168s Checking dependencies
168s *** ERROR: Couldn't find Rscript - is R installed? ***
168s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian)
168s h5dump: Version 1.14.5
168s 
168s Making directory /tmp/autopkgtest.axigHr/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/last
168s Making directory /tmp/autopkgtest.axigHr/autopkgtest_tmp/data/nanook_ecoli_500/N79596_dh10b_8kb_11022015/logs/last
168s Checking FASTA/Q directory structure...
168s   Using pass/fail dirs: yes
168s       Using batch dirs: no
168s         Using barcodes: no
168s 
172s 
Processing [                                                  ] 0/3
Processing [================                                  ] 1/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
Processing [==================================================] 3/3
172s 
172s DONE
172s 
172s NanoOK v1.33
172s 
172s Comments/bugs to: richard.leggett@earlham.ac.uk
172s Follow NanoOK on twitter: @NanoOK_Software
172s 
172s Scripts dir: /usr/share/nanook/bin
172s 
172s Checking dependencies
172s *** ERROR: Couldn't find Rscript - is R installed? ***
172s pdfTeX 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian)
172s h5dump: Version 1.14.5
172s 
172s Checking FASTA/Q directory structure...
172s   Using pass/fail dirs: yes
172s       Using batch dirs: no
172s         Using barcodes: no
172s 
172s Using .sizes file ecoli_dh10b_cs.fasta.sizes
172s Note: if you have changed the reference file, you need to delete the .sizes file and re-run.
172s 
172s Reading reference sizes and making directories
172s 	Escherichia_coli	4686137
172s 	Control_sequence	3560
172s 
172s Calculating reference GC
172s 	Escherichia_coli
172s 	Control_sequence
172s 
172s Parsing Template
172s 
[                                                  ] 0/1
[==================================================] 1/1
172s 
172s Error: unable to find any Template alignments to process.
172s Common reasons for this:
172s 1. Failure to index the reference with the alignment tool, resulting in alignment files of 0 bytes
172s 2. Wrong reference specified to the align stage, resulting in no alignments
172s 3. When indexing with LAST, the output prefix needs to be the same as the reference FASTA file, minus the .fasta extension
172s    e.g. lastdb -Q 0 referencename referencename.fasta
172s 
173s autopkgtest [11:45:41]: test run-unit-test: -----------------------]
173s autopkgtest [11:45:41]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
173s run-unit-test        FAIL non-zero exit status 1
174s autopkgtest [11:45:42]: @@@@@@@@@@@@@@@@@@@@ summary
174s run-unit-test        FAIL non-zero exit status 1
194s nova [W] Skipping flock for amd64
194s Creating nova instance adt-plucky-i386-nanook-20250219-114248-juju-7f2275-prod-proposed-migration-environment-2-c1af3823-8896-4c55-bdb0-9331443ffaa1 from image adt/ubuntu-plucky-amd64-server-20250219.img (UUID 90711abf-916f-4a80-845a-825250a78697)...
194s nova [W] Timed out waiting for 04ad7e8f-dd7e-43df-a245-4dd7b7027dc3 to get deleted.