0s autopkgtest [12:49:38]: starting date and time: 2024-11-14 12:49:38+0000 0s autopkgtest [12:49:38]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [12:49:38]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.z874r9ck/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade hdmf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-4.secgroup --name adt-plucky-i386-hdmf-20241114-124938-juju-7f2275-prod-proposed-migration-environment-20-a5340b2f-66a6-48c5-8404-6f9e07b9a6b2 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 47s autopkgtest [12:50:25]: testbed dpkg architecture: amd64 47s autopkgtest [12:50:25]: testbed apt version: 2.9.8 47s autopkgtest [12:50:25]: test architecture: i386 47s autopkgtest [12:50:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 48s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 48s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [991 kB] 49s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 49s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 49s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.3 kB] 49s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [76.1 kB] 49s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [135 kB] 49s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 49s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [288 kB] 49s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [761 kB] 49s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [1084 B] 49s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [9252 B] 49s Fetched 2489 kB in 1s (2989 kB/s) 49s Reading package lists... 51s Reading package lists... 52s Building dependency tree... 52s Reading state information... 52s Calculating upgrade... 52s The following NEW packages will be installed: 52s python3.13-gdbm 52s The following packages will be upgraded: 52s libpython3-stdlib python3 python3-gdbm python3-minimal 52s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 52s Need to get 101 kB of archives. 52s After this operation, 100 kB of additional disk space will be used. 52s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 52s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 52s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 52s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 53s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 53s Fetched 101 kB in 0s (296 kB/s) 53s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 53s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 53s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 53s Setting up python3-minimal (3.12.7-1) ... 53s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75542 files and directories currently installed.) 53s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 53s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 53s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 53s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 53s Selecting previously unselected package python3.13-gdbm. 53s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 53s Unpacking python3.13-gdbm (3.13.0-2) ... 53s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 53s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 53s Setting up python3.13-gdbm (3.13.0-2) ... 53s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 53s Setting up python3 (3.12.7-1) ... 54s Setting up python3-gdbm:amd64 (3.12.7-1) ... 54s Processing triggers for man-db (2.12.1-3) ... 54s Reading package lists... 55s Building dependency tree... 55s Reading state information... 55s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 55s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 55s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 55s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 56s Reading package lists... 56s Reading package lists... 56s Building dependency tree... 56s Reading state information... 56s Calculating upgrade... 57s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 57s Reading package lists... 57s Building dependency tree... 57s Reading state information... 57s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 60s autopkgtest [12:50:38]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 60s autopkgtest [12:50:38]: @@@@@@@@@@@@@@@@@@@@ apt-source hdmf 62s Get:1 http://ftpmaster.internal/ubuntu plucky/universe hdmf 3.14.5-1 (dsc) [2399 B] 62s Get:2 http://ftpmaster.internal/ubuntu plucky/universe hdmf 3.14.5-1 (tar) [15.8 MB] 62s Get:3 http://ftpmaster.internal/ubuntu plucky/universe hdmf 3.14.5-1 (diff) [6460 B] 62s gpgv: Signature made Sat Nov 2 15:04:50 2024 UTC 62s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 62s gpgv: issuer "emollier@debian.org" 62s gpgv: Can't check signature: No public key 62s dpkg-source: warning: cannot verify inline signature for ./hdmf_3.14.5-1.dsc: no acceptable signature found 63s autopkgtest [12:50:41]: testing package hdmf version 3.14.5-1 63s autopkgtest [12:50:41]: build not needed 64s autopkgtest [12:50:42]: test run-unit-test: preparing testbed 66s Note, using file '/tmp/autopkgtest.1DAAgo/1-autopkgtest-satdep.dsc' to get the build dependencies 66s Reading package lists... 67s Building dependency tree... 67s Reading state information... 67s Starting pkgProblemResolver with broken count: 0 67s Starting 2 pkgProblemResolver with broken count: 0 67s Done 67s The following NEW packages will be installed: 67s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu g++ 67s g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 67s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu libaec0 libasan8 libblas3 67s libcc1-0 libgcc-14-dev libgfortran5 libgomp1 libhdf5-103-1t64 67s libhdf5-hl-100t64 libhwasan0 libisl23 libitm1 liblapack3 liblbfgsb0 liblsan0 67s liblzf1 libmpc3 libpython3.13-minimal libpython3.13-stdlib libquadmath0 67s libstdc++-14-dev libsz2 libtsan2 libubsan1 python3-all python3-dateutil 67s python3-decorator python3-h5py python3-h5py-serial python3-hdmf 67s python3-numpy python3-pandas python3-pandas-lib python3-ruamel.yaml 67s python3-ruamel.yaml.clib python3-scipy python3-six python3-tz python3.13 67s python3.13-minimal 67s 0 upgraded, 53 newly installed, 0 to remove and 0 not upgraded. 67s Need to get 109 MB of archives. 67s After this operation, 414 MB of additional disk space will be used. 67s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 68s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 68s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libisl23 amd64 0.27-1 [685 kB] 68s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 68s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [11.9 MB] 68s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-14 amd64 14.2.0-8ubuntu1 [1030 B] 68s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [5452 B] 68s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 cpp amd64 4:14.1.0-2ubuntu1 [22.4 kB] 68s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libcc1-0 amd64 14.2.0-8ubuntu1 [47.6 kB] 68s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 68s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libitm1 amd64 14.2.0-8ubuntu1 [29.1 kB] 68s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libasan8 amd64 14.2.0-8ubuntu1 [2998 kB] 68s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 liblsan0 amd64 14.2.0-8ubuntu1 [1317 kB] 68s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libtsan2 amd64 14.2.0-8ubuntu1 [2732 kB] 68s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libubsan1 amd64 14.2.0-8ubuntu1 [1177 kB] 68s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libhwasan0 amd64 14.2.0-8ubuntu1 [1634 kB] 68s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libquadmath0 amd64 14.2.0-8ubuntu1 [153 kB] 69s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-14-dev amd64 14.2.0-8ubuntu1 [2814 kB] 69s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [23.3 MB] 69s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-14 amd64 14.2.0-8ubuntu1 [528 kB] 69s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [1214 B] 69s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc amd64 4:14.1.0-2ubuntu1 [5000 B] 69s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++-14-dev amd64 14.2.0-8ubuntu1 [2504 kB] 69s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-8ubuntu1 [13.3 MB] 70s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-14 amd64 14.2.0-8ubuntu1 [19.9 kB] 70s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 g++-x86-64-linux-gnu amd64 4:14.1.0-2ubuntu1 [966 B] 70s Get:27 http://ftpmaster.internal/ubuntu plucky/main amd64 g++ amd64 4:14.1.0-2ubuntu1 [1100 B] 70s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 70s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 70s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 70s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 70s Get:32 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 70s Get:33 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 70s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 70s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 70s Get:36 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 70s Get:37 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 70s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 70s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 70s Get:40 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 70s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 70s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 70s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 70s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 70s Get:45 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.11.0-5ubuntu1 [1107 kB] 70s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.11.0-5ubuntu1 [7974 B] 70s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB] 70s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [5087 kB] 70s Get:49 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 70s Get:50 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 71s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ruamel.yaml.clib amd64 0.2.8+ds-2 [138 kB] 71s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ruamel.yaml all 0.18.6+ds-3 [126 kB] 71s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-hdmf all 3.14.5-1 [235 kB] 71s Fetched 109 MB in 3s (34.1 MB/s) 71s Selecting previously unselected package libpython3.13-minimal:amd64. 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75549 files and directories currently installed.) 71s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_amd64.deb ... 71s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 71s Selecting previously unselected package python3.13-minimal. 71s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_amd64.deb ... 71s Unpacking python3.13-minimal (3.13.0-2) ... 71s Selecting previously unselected package libisl23:amd64. 71s Preparing to unpack .../02-libisl23_0.27-1_amd64.deb ... 71s Unpacking libisl23:amd64 (0.27-1) ... 71s Selecting previously unselected package libmpc3:amd64. 71s Preparing to unpack .../03-libmpc3_1.3.1-1build2_amd64.deb ... 71s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 71s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 71s Preparing to unpack .../04-cpp-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 71s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 71s Selecting previously unselected package cpp-14. 71s Preparing to unpack .../05-cpp-14_14.2.0-8ubuntu1_amd64.deb ... 71s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 71s Selecting previously unselected package cpp-x86-64-linux-gnu. 71s Preparing to unpack .../06-cpp-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 71s Unpacking cpp-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 71s Selecting previously unselected package cpp. 71s Preparing to unpack .../07-cpp_4%3a14.1.0-2ubuntu1_amd64.deb ... 71s Unpacking cpp (4:14.1.0-2ubuntu1) ... 71s Selecting previously unselected package libcc1-0:amd64. 71s Preparing to unpack .../08-libcc1-0_14.2.0-8ubuntu1_amd64.deb ... 71s Unpacking libcc1-0:amd64 (14.2.0-8ubuntu1) ... 71s Selecting previously unselected package libgomp1:amd64. 71s Preparing to unpack .../09-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 71s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 71s Selecting previously unselected package libitm1:amd64. 71s Preparing to unpack .../10-libitm1_14.2.0-8ubuntu1_amd64.deb ... 71s Unpacking libitm1:amd64 (14.2.0-8ubuntu1) ... 71s Selecting previously unselected package libasan8:amd64. 71s Preparing to unpack .../11-libasan8_14.2.0-8ubuntu1_amd64.deb ... 71s Unpacking libasan8:amd64 (14.2.0-8ubuntu1) ... 71s Selecting previously unselected package liblsan0:amd64. 71s Preparing to unpack .../12-liblsan0_14.2.0-8ubuntu1_amd64.deb ... 71s Unpacking liblsan0:amd64 (14.2.0-8ubuntu1) ... 71s Selecting previously unselected package libtsan2:amd64. 71s Preparing to unpack .../13-libtsan2_14.2.0-8ubuntu1_amd64.deb ... 71s Unpacking libtsan2:amd64 (14.2.0-8ubuntu1) ... 71s Selecting previously unselected package libubsan1:amd64. 71s Preparing to unpack .../14-libubsan1_14.2.0-8ubuntu1_amd64.deb ... 71s Unpacking libubsan1:amd64 (14.2.0-8ubuntu1) ... 72s Selecting previously unselected package libhwasan0:amd64. 72s Preparing to unpack .../15-libhwasan0_14.2.0-8ubuntu1_amd64.deb ... 72s Unpacking libhwasan0:amd64 (14.2.0-8ubuntu1) ... 72s Selecting previously unselected package libquadmath0:amd64. 72s Preparing to unpack .../16-libquadmath0_14.2.0-8ubuntu1_amd64.deb ... 72s Unpacking libquadmath0:amd64 (14.2.0-8ubuntu1) ... 72s Selecting previously unselected package libgcc-14-dev:amd64. 72s Preparing to unpack .../17-libgcc-14-dev_14.2.0-8ubuntu1_amd64.deb ... 72s Unpacking libgcc-14-dev:amd64 (14.2.0-8ubuntu1) ... 72s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 72s Preparing to unpack .../18-gcc-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 72s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 72s Selecting previously unselected package gcc-14. 72s Preparing to unpack .../19-gcc-14_14.2.0-8ubuntu1_amd64.deb ... 72s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 72s Selecting previously unselected package gcc-x86-64-linux-gnu. 72s Preparing to unpack .../20-gcc-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 72s Unpacking gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 72s Selecting previously unselected package gcc. 72s Preparing to unpack .../21-gcc_4%3a14.1.0-2ubuntu1_amd64.deb ... 72s Unpacking gcc (4:14.1.0-2ubuntu1) ... 72s Selecting previously unselected package libstdc++-14-dev:amd64. 72s Preparing to unpack .../22-libstdc++-14-dev_14.2.0-8ubuntu1_amd64.deb ... 72s Unpacking libstdc++-14-dev:amd64 (14.2.0-8ubuntu1) ... 72s Selecting previously unselected package g++-14-x86-64-linux-gnu. 72s Preparing to unpack .../23-g++-14-x86-64-linux-gnu_14.2.0-8ubuntu1_amd64.deb ... 72s Unpacking g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 73s Selecting previously unselected package g++-14. 73s Preparing to unpack .../24-g++-14_14.2.0-8ubuntu1_amd64.deb ... 73s Unpacking g++-14 (14.2.0-8ubuntu1) ... 73s Selecting previously unselected package g++-x86-64-linux-gnu. 73s Preparing to unpack .../25-g++-x86-64-linux-gnu_4%3a14.1.0-2ubuntu1_amd64.deb ... 73s Unpacking g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 73s Selecting previously unselected package g++. 73s Preparing to unpack .../26-g++_4%3a14.1.0-2ubuntu1_amd64.deb ... 73s Unpacking g++ (4:14.1.0-2ubuntu1) ... 73s Selecting previously unselected package build-essential. 73s Preparing to unpack .../27-build-essential_12.10ubuntu1_amd64.deb ... 73s Unpacking build-essential (12.10ubuntu1) ... 73s Selecting previously unselected package libaec0:amd64. 73s Preparing to unpack .../28-libaec0_1.1.3-1_amd64.deb ... 73s Unpacking libaec0:amd64 (1.1.3-1) ... 73s Selecting previously unselected package libblas3:amd64. 73s Preparing to unpack .../29-libblas3_3.12.0-3build2_amd64.deb ... 73s Unpacking libblas3:amd64 (3.12.0-3build2) ... 73s Selecting previously unselected package libgfortran5:amd64. 73s Preparing to unpack .../30-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 73s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 73s Selecting previously unselected package libsz2:amd64. 73s Preparing to unpack .../31-libsz2_1.1.3-1_amd64.deb ... 73s Unpacking libsz2:amd64 (1.1.3-1) ... 73s Selecting previously unselected package libhdf5-103-1t64:amd64. 73s Preparing to unpack .../32-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 73s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 73s Selecting previously unselected package libhdf5-hl-100t64:amd64. 73s Preparing to unpack .../33-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 73s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 73s Selecting previously unselected package liblapack3:amd64. 73s Preparing to unpack .../34-liblapack3_3.12.0-3build2_amd64.deb ... 73s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 73s Selecting previously unselected package liblbfgsb0:amd64. 73s Preparing to unpack .../35-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 73s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 73s Selecting previously unselected package liblzf1:amd64. 73s Preparing to unpack .../36-liblzf1_3.6-4_amd64.deb ... 73s Unpacking liblzf1:amd64 (3.6-4) ... 73s Selecting previously unselected package libpython3.13-stdlib:amd64. 73s Preparing to unpack .../37-libpython3.13-stdlib_3.13.0-2_amd64.deb ... 73s Unpacking libpython3.13-stdlib:amd64 (3.13.0-2) ... 73s Selecting previously unselected package python3.13. 73s Preparing to unpack .../38-python3.13_3.13.0-2_amd64.deb ... 73s Unpacking python3.13 (3.13.0-2) ... 73s Selecting previously unselected package python3-all. 73s Preparing to unpack .../39-python3-all_3.12.7-1_amd64.deb ... 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... 93s Setting up gcc-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 93s Setting up python3-hdmf (3.14.5-1) ... 93s Setting up gcc-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 93s Setting up gcc-14 (14.2.0-8ubuntu1) ... 93s Setting up g++-14-x86-64-linux-gnu (14.2.0-8ubuntu1) ... 93s Setting up g++-x86-64-linux-gnu (4:14.1.0-2ubuntu1) ... 93s Setting up g++-14 (14.2.0-8ubuntu1) ... 93s Setting up gcc (4:14.1.0-2ubuntu1) ... 93s Setting up g++ (4:14.1.0-2ubuntu1) ... 93s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 93s Setting up build-essential (12.10ubuntu1) ... 93s Processing triggers for systemd (256.5-2ubuntu4) ... 93s Processing triggers for man-db (2.12.1-3) ... 94s Processing triggers for libc-bin (2.40-1ubuntu3) ... 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 98s Starting pkgProblemResolver with broken count: 0 98s Starting 2 pkgProblemResolver with broken count: 0 98s Done 98s The following NEW packages will be installed: 98s autopkgtest-satdep 98s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 98s Need to get 0 B/696 B of archives. 98s After this operation, 0 B of additional disk space will be used. 98s Get:1 /tmp/autopkgtest.1DAAgo/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 99s Selecting previously unselected package autopkgtest-satdep. 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82023 files and directories currently installed.) 99s Preparing to unpack .../2-autopkgtest-satdep.deb ... 99s Unpacking autopkgtest-satdep (0) ... 99s Setting up autopkgtest-satdep (0) ... 100s (Reading database ... 82023 files and directories currently installed.) 101s Removing autopkgtest-satdep (0) ... 101s autopkgtest [12:51:19]: test run-unit-test: [----------------------- 102s Testing with python3.13 in /tmp/autopkgtest.1DAAgo/autopkgtest_tmp: 102s tests.unit.back_compat_tests.test_1_1_0 (unittest.loader._FailedTest.tests.unit.back_compat_tests.test_1_1_0) ... ERROR 102s tests.unit.build_tests.mapper_tests.test_build (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build) ... ERROR 102s tests.unit.build_tests.mapper_tests.test_build_datetime (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_datetime) ... ERROR 102s tests.unit.build_tests.mapper_tests.test_build_quantity (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_quantity) ... ERROR 102s tests.unit.build_tests.test_builder (unittest.loader._FailedTest.tests.unit.build_tests.test_builder) ... ERROR 102s tests.unit.build_tests.test_classgenerator (unittest.loader._FailedTest.tests.unit.build_tests.test_classgenerator) ... ERROR 102s tests.unit.build_tests.test_convert_dtype (unittest.loader._FailedTest.tests.unit.build_tests.test_convert_dtype) ... ERROR 102s tests.unit.build_tests.test_io_manager (unittest.loader._FailedTest.tests.unit.build_tests.test_io_manager) ... ERROR 102s tests.unit.build_tests.test_io_map (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map) ... ERROR 102s tests.unit.build_tests.test_io_map_data (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map_data) ... ERROR 102s tests.unit.common.test_alignedtable (unittest.loader._FailedTest.tests.unit.common.test_alignedtable) ... ERROR 102s tests.unit.common.test_common (unittest.loader._FailedTest.tests.unit.common.test_common) ... ERROR 102s tests.unit.common.test_common_io (unittest.loader._FailedTest.tests.unit.common.test_common_io) ... ERROR 102s tests.unit.common.test_generate_table (unittest.loader._FailedTest.tests.unit.common.test_generate_table) ... ERROR 102s tests.unit.common.test_linkedtables (unittest.loader._FailedTest.tests.unit.common.test_linkedtables) ... ERROR 102s tests.unit.common.test_multi (unittest.loader._FailedTest.tests.unit.common.test_multi) ... ERROR 102s tests.unit.common.test_resources (unittest.loader._FailedTest.tests.unit.common.test_resources) ... ERROR 102s tests.unit.common.test_sparse (unittest.loader._FailedTest.tests.unit.common.test_sparse) ... ERROR 102s tests.unit.common.test_table (unittest.loader._FailedTest.tests.unit.common.test_table) ... ERROR 102s tests.unit.spec_tests.test_attribute_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_attribute_spec) ... ERROR 102s tests.unit.spec_tests.test_dataset_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dataset_spec) ... ERROR 102s tests.unit.spec_tests.test_dtype_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dtype_spec) ... ERROR 102s tests.unit.spec_tests.test_group_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_group_spec) ... ERROR 102s tests.unit.spec_tests.test_link_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_link_spec) ... ERROR 102s tests.unit.spec_tests.test_load_namespace (unittest.loader._FailedTest.tests.unit.spec_tests.test_load_namespace) ... ERROR 102s tests.unit.spec_tests.test_ref_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_ref_spec) ... ERROR 102s tests.unit.spec_tests.test_spec_catalog (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_catalog) ... ERROR 102s tests.unit.spec_tests.test_spec_write (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_write) ... ERROR 102s tests.unit.test_container (unittest.loader._FailedTest.tests.unit.test_container) ... ERROR 102s tests.unit.test_io_hdf5 (unittest.loader._FailedTest.tests.unit.test_io_hdf5) ... ERROR 102s tests.unit.test_io_hdf5_h5tools (unittest.loader._FailedTest.tests.unit.test_io_hdf5_h5tools) ... ERROR 102s tests.unit.test_io_hdf5_streaming (unittest.loader._FailedTest.tests.unit.test_io_hdf5_streaming) ... ERROR 102s tests.unit.test_multicontainerinterface (unittest.loader._FailedTest.tests.unit.test_multicontainerinterface) ... ERROR 102s tests.unit.test_query (unittest.loader._FailedTest.tests.unit.test_query) ... ERROR 102s tests.unit.test_table (unittest.loader._FailedTest.tests.unit.test_table) ... ERROR 102s tests.unit.test_term_set (unittest.loader._FailedTest.tests.unit.test_term_set) ... ERROR 102s tests.unit.utils_test.test_core_DataChunk (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunk) ... ERROR 102s tests.unit.utils_test.test_core_DataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunkIterator) ... ERROR 102s tests.unit.utils_test.test_core_DataIO (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataIO) ... ERROR 102s tests.unit.utils_test.test_core_GenericDataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_GenericDataChunkIterator) ... ERROR 102s tests.unit.utils_test.test_core_ShapeValidator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_ShapeValidator) ... ERROR 102s tests.unit.utils_test.test_data_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_data_utils) ... ERROR 102s tests.unit.utils_test.test_docval (unittest.loader._FailedTest.tests.unit.utils_test.test_docval) ... ERROR 102s tests.unit.utils_test.test_labelleddict (unittest.loader._FailedTest.tests.unit.utils_test.test_labelleddict) ... ERROR 102s tests.unit.utils_test.test_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_utils) ... ERROR 102s tests.unit.validator_tests.test_errors (unittest.loader._FailedTest.tests.unit.validator_tests.test_errors) ... ERROR 102s tests.unit.validator_tests.test_validate (unittest.loader._FailedTest.tests.unit.validator_tests.test_validate) ... ERROR 102s 102s ====================================================================== 102s ERROR: tests.unit.back_compat_tests.test_1_1_0 (unittest.loader._FailedTest.tests.unit.back_compat_tests.test_1_1_0) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.back_compat_tests.test_1_1_0 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/back_compat_tests/test_1_1_0.py", line 4, in 102s from hdmf.backends.hdf5.h5tools import HDF5IO 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.build_tests.mapper_tests.test_build (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.build_tests.mapper_tests.test_build 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/build_tests/mapper_tests/test_build.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.build_tests.mapper_tests.test_build_datetime (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_datetime) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.build_tests.mapper_tests.test_build_datetime 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/build_tests/mapper_tests/test_build_datetime.py", line 1, in 102s from hdmf.utils import docval, getargs 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.build_tests.mapper_tests.test_build_quantity (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_quantity) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.build_tests.mapper_tests.test_build_quantity 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/build_tests/mapper_tests/test_build_quantity.py", line 1, in 102s from hdmf import Container, Data 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.build_tests.test_builder (unittest.loader._FailedTest.tests.unit.build_tests.test_builder) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.build_tests.test_builder 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/build_tests/test_builder.py", line 1, in 102s from hdmf.build import GroupBuilder, DatasetBuilder, LinkBuilder, ReferenceBuilder, RegionBuilder 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.build_tests.test_classgenerator (unittest.loader._FailedTest.tests.unit.build_tests.test_classgenerator) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.build_tests.test_classgenerator 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/build_tests/test_classgenerator.py", line 1, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.build_tests.test_convert_dtype (unittest.loader._FailedTest.tests.unit.build_tests.test_convert_dtype) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.build_tests.test_convert_dtype 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/build_tests/test_convert_dtype.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.build_tests.test_io_manager (unittest.loader._FailedTest.tests.unit.build_tests.test_io_manager) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.build_tests.test_io_manager 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/build_tests/test_io_manager.py", line 3, in 102s from hdmf.build import GroupBuilder, DatasetBuilder, ObjectMapper, BuildManager, TypeMap, ContainerConfigurationError 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.build_tests.test_io_map (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.build_tests.test_io_map 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/build_tests/test_io_map.py", line 1, in 102s from hdmf.utils import StrDataset, docval, getargs 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.build_tests.test_io_map_data (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map_data) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.build_tests.test_io_map_data 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 102s from . import _debian_h5py_serial as _h5py 102s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 102s from . import _errors 102s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/build_tests/test_io_map_data.py", line 3, in 102s import h5py 102s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 102s from . import _debian_h5py_mpi as _h5py 102s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.common.test_alignedtable (unittest.loader._FailedTest.tests.unit.common.test_alignedtable) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.common.test_alignedtable 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/common/test_alignedtable.py", line 1, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.common.test_common (unittest.loader._FailedTest.tests.unit.common.test_common) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.common.test_common 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/common/test_common.py", line 1, in 102s from hdmf import Data, Container 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.common.test_common_io (unittest.loader._FailedTest.tests.unit.common.test_common_io) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.common.test_common_io 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 102s from . import _debian_h5py_serial as _h5py 102s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 102s from . import _errors 102s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/common/test_common_io.py", line 1, in 102s from h5py import File 102s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 102s from . import _debian_h5py_mpi as _h5py 102s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.common.test_generate_table (unittest.loader._FailedTest.tests.unit.common.test_generate_table) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.common.test_generate_table 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/common/test_generate_table.py", line 1, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.common.test_linkedtables (unittest.loader._FailedTest.tests.unit.common.test_linkedtables) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.common.test_linkedtables 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/common/test_linkedtables.py", line 6, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.common.test_multi (unittest.loader._FailedTest.tests.unit.common.test_multi) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.common.test_multi 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/common/test_multi.py", line 1, in 102s from hdmf.common import SimpleMultiContainer 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.common.test_resources (unittest.loader._FailedTest.tests.unit.common.test_resources) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.common.test_resources 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/common/test_resources.py", line 1, in 102s import pandas as pd 102s File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 19, in 102s raise ImportError( 102s "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies) 102s ) 102s ImportError: Unable to import required dependencies: 102s numpy: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.common.test_sparse (unittest.loader._FailedTest.tests.unit.common.test_sparse) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.common.test_sparse 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/common/test_sparse.py", line 1, in 102s from hdmf.common import CSRMatrix 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.common.test_table (unittest.loader._FailedTest.tests.unit.common.test_table) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.common.test_table 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 102s from . import _debian_h5py_serial as _h5py 102s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 102s from . import _errors 102s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/common/test_table.py", line 2, in 102s import h5py 102s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 102s from . import _debian_h5py_mpi as _h5py 102s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.spec_tests.test_attribute_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_attribute_spec) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.spec_tests.test_attribute_spec 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/spec_tests/test_attribute_spec.py", line 3, in 102s from hdmf.spec import AttributeSpec, RefSpec 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.spec_tests.test_dataset_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dataset_spec) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.spec_tests.test_dataset_spec 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/spec_tests/test_dataset_spec.py", line 3, in 102s from hdmf.spec import GroupSpec, DatasetSpec, AttributeSpec, DtypeSpec, RefSpec 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.spec_tests.test_dtype_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dtype_spec) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.spec_tests.test_dtype_spec 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/spec_tests/test_dtype_spec.py", line 1, in 102s from hdmf.spec import DtypeSpec, DtypeHelper, RefSpec 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.spec_tests.test_group_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_group_spec) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.spec_tests.test_group_spec 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/spec_tests/test_group_spec.py", line 3, in 102s from hdmf.spec import GroupSpec, DatasetSpec, AttributeSpec, LinkSpec 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.spec_tests.test_link_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_link_spec) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.spec_tests.test_link_spec 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/spec_tests/test_link_spec.py", line 3, in 102s from hdmf.spec import GroupSpec, LinkSpec 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.spec_tests.test_load_namespace (unittest.loader._FailedTest.tests.unit.spec_tests.test_load_namespace) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.spec_tests.test_load_namespace 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/spec_tests/test_load_namespace.py", line 7, in 102s from hdmf.common import get_type_map 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.spec_tests.test_ref_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_ref_spec) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.spec_tests.test_ref_spec 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/spec_tests/test_ref_spec.py", line 3, in 102s from hdmf.spec import RefSpec 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.spec_tests.test_spec_catalog (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_catalog) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.spec_tests.test_spec_catalog 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/spec_tests/test_spec_catalog.py", line 3, in 102s from hdmf.spec import GroupSpec, DatasetSpec, AttributeSpec, SpecCatalog 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.spec_tests.test_spec_write (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_write) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.spec_tests.test_spec_write 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/spec_tests/test_spec_write.py", line 4, in 102s from hdmf.spec.namespace import SpecNamespace, NamespaceCatalog 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.test_container (unittest.loader._FailedTest.tests.unit.test_container) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.test_container 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/test_container.py", line 1, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.test_io_hdf5 (unittest.loader._FailedTest.tests.unit.test_io_hdf5) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.test_io_hdf5 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/test_io_hdf5.py", line 5, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.test_io_hdf5_h5tools (unittest.loader._FailedTest.tests.unit.test_io_hdf5_h5tools) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.test_io_hdf5_h5tools 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 102s from . import _debian_h5py_serial as _h5py 102s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 102s from . import _errors 102s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/test_io_hdf5_h5tools.py", line 12, in 102s import h5py 102s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 102s from . import _debian_h5py_mpi as _h5py 102s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.test_io_hdf5_streaming (unittest.loader._FailedTest.tests.unit.test_io_hdf5_streaming) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.test_io_hdf5_streaming 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 102s from . import _debian_h5py_serial as _h5py 102s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 102s from . import _errors 102s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/test_io_hdf5_streaming.py", line 4, in 102s import h5py 102s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 102s from . import _debian_h5py_mpi as _h5py 102s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.test_multicontainerinterface (unittest.loader._FailedTest.tests.unit.test_multicontainerinterface) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.test_multicontainerinterface 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/test_multicontainerinterface.py", line 3, in 102s from hdmf.container import Container, Data, MultiContainerInterface 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.test_query (unittest.loader._FailedTest.tests.unit.test_query) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.test_query 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/test_query.py", line 4, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.test_table (unittest.loader._FailedTest.tests.unit.test_table) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.test_table 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/test_table.py", line 1, in 102s import pandas as pd 102s File "/usr/lib/python3/dist-packages/pandas/__init__.py", line 19, in 102s raise ImportError( 102s "Unable to import required dependencies:\n" + "\n".join(_missing_dependencies) 102s ) 102s ImportError: Unable to import required dependencies: 102s numpy: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.test_term_set (unittest.loader._FailedTest.tests.unit.test_term_set) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.test_term_set 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/test_term_set.py", line 2, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.utils_test.test_core_DataChunk (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunk) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.utils_test.test_core_DataChunk 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/utils_test/test_core_DataChunk.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.utils_test.test_core_DataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunkIterator) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.utils_test.test_core_DataChunkIterator 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/utils_test/test_core_DataChunkIterator.py", line 1, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.utils_test.test_core_DataIO (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataIO) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.utils_test.test_core_DataIO 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/utils_test/test_core_DataIO.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.utils_test.test_core_GenericDataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_GenericDataChunkIterator) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.utils_test.test_core_GenericDataChunkIterator 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/utils_test/test_core_GenericDataChunkIterator.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.utils_test.test_core_ShapeValidator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_ShapeValidator) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.utils_test.test_core_ShapeValidator 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/utils_test/test_core_ShapeValidator.py", line 1, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.utils_test.test_data_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_data_utils) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.utils_test.test_data_utils 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/utils_test/test_data_utils.py", line 1, in 102s from hdmf.data_utils import append_data 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.utils_test.test_docval (unittest.loader._FailedTest.tests.unit.utils_test.test_docval) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.utils_test.test_docval 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/utils_test/test_docval.py", line 1, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.utils_test.test_labelleddict (unittest.loader._FailedTest.tests.unit.utils_test.test_labelleddict) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.utils_test.test_labelleddict 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/utils_test/test_labelleddict.py", line 1, in 102s from hdmf.testing import TestCase 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.utils_test.test_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_utils) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.utils_test.test_utils 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 102s from . import _debian_h5py_serial as _h5py 102s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 102s from . import _errors 102s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/utils_test/test_utils.py", line 3, in 102s import h5py 102s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 102s from . import _debian_h5py_mpi as _h5py 102s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.validator_tests.test_errors (unittest.loader._FailedTest.tests.unit.validator_tests.test_errors) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.validator_tests.test_errors 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/validator_tests/test_errors.py", line 3, in 102s from hdmf.validate.errors import Error 102s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 102s from . import query 102s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ====================================================================== 102s ERROR: tests.unit.validator_tests.test_validate (unittest.loader._FailedTest.tests.unit.validator_tests.test_validate) 102s ---------------------------------------------------------------------- 102s ImportError: Failed to import test module: tests.unit.validator_tests.test_validate 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 102s from . import multiarray 102s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 102s from . import overrides 102s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 102s from numpy.core._multiarray_umath import ( 102s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 102s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 102s 102s During handling of the above exception, another exception occurred: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 102s from numpy.__config__ import show as show_config 102s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 102s from numpy.core._multiarray_umath import ( 102s ...<3 lines>... 102s ) 102s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 102s raise ImportError(msg) 102s ImportError: 102s 102s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 102s 102s Importing the numpy C-extensions failed. This error can happen for 102s many reasons, often due to issues with your setup or how NumPy was 102s installed. 102s 102s We have compiled some common reasons and troubleshooting tips at: 102s 102s https://numpy.org/devdocs/user/troubleshooting-importerror.html 102s 102s Please note and check the following: 102s 102s * The Python version is: Python3.13 from "/usr/bin/python3.13" 102s * The NumPy version is: "1.26.4" 102s 102s and make sure that they are the versions you expect. 102s Please carefully study the documentation linked above for further help. 102s 102s Original error was: No module named 'numpy.core._multiarray_umath' 102s 102s 102s The above exception was the direct cause of the following exception: 102s 102s Traceback (most recent call last): 102s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 102s module = self._get_module_from_name(name) 102s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 102s __import__(name) 102s ~~~~~~~~~~^^^^^^ 102s File "/tmp/autopkgtest.1DAAgo/autopkgtest_tmp/tests/unit/validator_tests/test_validate.py", line 5, in 102s import numpy as np 102s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 102s raise ImportError(msg) from e 102s ImportError: Error importing numpy: you should not try to import numpy from 102s its source directory; please exit the numpy source tree, and relaunch 102s your python interpreter from there. 102s 102s 102s ---------------------------------------------------------------------- 102s Ran 47 tests in 0.003s 102s 102s FAILED (errors=47) 103s autopkgtest [12:51:21]: test run-unit-test: -----------------------] 103s run-unit-test FAIL non-zero exit status 1 103s autopkgtest [12:51:21]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 103s autopkgtest [12:51:21]: test autodep8-python3: preparing testbed 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s Starting pkgProblemResolver with broken count: 0 107s Starting 2 pkgProblemResolver with broken count: 0 107s Done 107s The following NEW packages will be installed: 107s autopkgtest-satdep 107s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 107s Need to get 0 B/696 B of archives. 107s After this operation, 0 B of additional disk space will be used. 107s Get:1 /tmp/autopkgtest.1DAAgo/4-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 108s Selecting previously unselected package autopkgtest-satdep. 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 82023 files and directories currently installed.) 108s Preparing to unpack .../4-autopkgtest-satdep.deb ... 108s Unpacking autopkgtest-satdep (0) ... 108s Setting up autopkgtest-satdep (0) ... 108s autopkgtest: WARNING: package python3-hdmf:i386 is not installed though it should be 110s (Reading database ... 82023 files and directories currently installed.) 110s Removing autopkgtest-satdep (0) ... 110s autopkgtest [12:51:28]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import hdmf; print(hdmf)" ; done 110s autopkgtest [12:51:28]: test autodep8-python3: [----------------------- 110s Testing with python3.13: 110s Traceback (most recent call last): 110s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 110s from . import multiarray 110s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 110s from . import overrides 110s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 110s from numpy.core._multiarray_umath import ( 110s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 110s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 110s 110s During handling of the above exception, another exception occurred: 110s 110s Traceback (most recent call last): 110s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 110s from numpy.__config__ import show as show_config 110s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 110s from numpy.core._multiarray_umath import ( 110s ...<3 lines>... 110s ) 110s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 110s raise ImportError(msg) 110s ImportError: 110s 110s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 110s 110s Importing the numpy C-extensions failed. This error can happen for 110s many reasons, often due to issues with your setup or how NumPy was 110s installed. 110s 110s We have compiled some common reasons and troubleshooting tips at: 110s 110s https://numpy.org/devdocs/user/troubleshooting-importerror.html 110s 110s Please note and check the following: 110s 110s * The Python version is: Python3.13 from "/usr/bin/python3.13" 110s * The NumPy version is: "1.26.4" 110s 110s and make sure that they are the versions you expect. 110s Please carefully study the documentation linked above for further help. 110s 110s Original error was: No module named 'numpy.core._multiarray_umath' 110s 110s 110s The above exception was the direct cause of the following exception: 110s 110s Traceback (most recent call last): 110s File "", line 1, in 110s import hdmf; print(hdmf) 110s ^^^^^^^^^^^ 110s File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in 110s from . import query 110s File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in 110s import numpy as np 110s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 110s raise ImportError(msg) from e 110s ImportError: Error importing numpy: you should not try to import numpy from 110s its source directory; please exit the numpy source tree, and relaunch 110s your python interpreter from there. 111s autopkgtest [12:51:29]: test autodep8-python3: -----------------------] 111s autopkgtest [12:51:29]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 111s autodep8-python3 FAIL non-zero exit status 1 111s autopkgtest [12:51:29]: @@@@@@@@@@@@@@@@@@@@ summary 111s run-unit-test FAIL non-zero exit status 1 111s autodep8-python3 FAIL non-zero exit status 1 116s nova [W] Skipping flock for amd64 116s Creating nova instance adt-plucky-i386-hdmf-20241114-124938-juju-7f2275-prod-proposed-migration-environment-20-a5340b2f-66a6-48c5-8404-6f9e07b9a6b2 from image adt/ubuntu-plucky-amd64-server-20241114.img (UUID 79d80331-8736-463c-82c6-8c9e13c0a4ca)...