0s autopkgtest [02:29:54]: starting date and time: 2025-02-17 02:29:54+0000
  0s autopkgtest [02:29:54]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [02:29:54]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.fv12x2g0/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:spades --apt-upgrade circlator --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=spades/4.0.0+dfsg1-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-5.secgroup --name adt-plucky-i386-circlator-20250217-022953-juju-7f2275-prod-proposed-migration-environment-2-d8f819c7-0764-4dc5-a991-dc48dfe2c9e9 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 51s autopkgtest [02:30:45]: testbed dpkg architecture: amd64
 51s autopkgtest [02:30:45]: testbed apt version: 2.9.28
 51s autopkgtest [02:30:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 51s autopkgtest [02:30:45]: testbed release detected to be: None
 51s autopkgtest [02:30:45]: updating testbed package index (apt update)
 51s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB]
 51s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 51s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 51s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 51s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [61.5 kB]
 52s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B]
 52s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.9 kB]
 52s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [698 kB]
 52s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [80.7 kB]
 52s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [62.3 kB]
 52s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [7984 B]
 52s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2412 B]
 52s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [233 kB]
 52s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [614 kB]
 52s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [11.3 kB]
 52s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [3512 B]
 52s Fetched 1902 kB in 0s (3958 kB/s)
 53s Reading package lists...
 53s Reading package lists...
 53s Building dependency tree...
 53s Reading state information...
 54s Calculating upgrade...
 54s The following NEW packages will be installed:
 54s   gcc-15-base
 54s The following packages will be upgraded:
 54s   libatomic1 libgcc-s1 libstdc++6
 54s 3 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
 54s Need to get 939 kB of archives.
 54s After this operation, 156 kB of additional disk space will be used.
 54s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 gcc-15-base amd64 15-20250213-1ubuntu1 [53.2 kB]
 54s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libgcc-s1 amd64 15-20250213-1ubuntu1 [77.8 kB]
 54s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libstdc++6 amd64 15-20250213-1ubuntu1 [798 kB]
 54s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libatomic1 amd64 15-20250213-1ubuntu1 [10.4 kB]
 54s Fetched 939 kB in 0s (6152 kB/s)
 54s Selecting previously unselected package gcc-15-base:amd64.
 55s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 108914 files and directories currently installed.)
 55s Preparing to unpack .../gcc-15-base_15-20250213-1ubuntu1_amd64.deb ...
 55s Unpacking gcc-15-base:amd64 (15-20250213-1ubuntu1) ...
 55s Setting up gcc-15-base:amd64 (15-20250213-1ubuntu1) ...
 55s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 108919 files and directories currently installed.)
 55s Preparing to unpack .../libgcc-s1_15-20250213-1ubuntu1_amd64.deb ...
 55s Unpacking libgcc-s1:amd64 (15-20250213-1ubuntu1) over (14.2.0-17ubuntu1) ...
 55s Setting up libgcc-s1:amd64 (15-20250213-1ubuntu1) ...
 55s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 108919 files and directories currently installed.)
 55s Preparing to unpack .../libstdc++6_15-20250213-1ubuntu1_amd64.deb ...
 55s Unpacking libstdc++6:amd64 (15-20250213-1ubuntu1) over (14.2.0-17ubuntu1) ...
 55s Setting up libstdc++6:amd64 (15-20250213-1ubuntu1) ...
 55s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 108919 files and directories currently installed.)
 55s Preparing to unpack .../libatomic1_15-20250213-1ubuntu1_amd64.deb ...
 55s Unpacking libatomic1:amd64 (15-20250213-1ubuntu1) over (14.2.0-17ubuntu1) ...
 55s Setting up libatomic1:amd64 (15-20250213-1ubuntu1) ...
 55s Processing triggers for libc-bin (2.40-4ubuntu1) ...
 55s Reading package lists...
 56s Building dependency tree...
 56s Reading state information...
 56s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 56s autopkgtest [02:30:50]: upgrading testbed (apt dist-upgrade and autopurge)
 56s Reading package lists...
 56s Building dependency tree...
 56s Reading state information...
 57s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 57s Starting 2 pkgProblemResolver with broken count: 0
 57s Done
 57s Entering ResolveByKeep
 57s 
 58s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 58s Reading package lists...
 58s Building dependency tree...
 58s Reading state information...
 58s Starting pkgProblemResolver with broken count: 0
 58s Starting 2 pkgProblemResolver with broken count: 0
 58s Done
 59s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 59s autopkgtest [02:30:53]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Tue Feb  4 16:02:16 UTC 2025
 59s autopkgtest [02:30:53]: @@@@@@@@@@@@@@@@@@@@ apt-source circlator
 61s Get:1 http://ftpmaster.internal/ubuntu plucky/universe circlator 1.5.6-12 (dsc) [2302 B]
 61s Get:2 http://ftpmaster.internal/ubuntu plucky/universe circlator 1.5.6-12 (tar) [5724 kB]
 61s Get:3 http://ftpmaster.internal/ubuntu plucky/universe circlator 1.5.6-12 (diff) [6412 B]
 61s gpgv: Signature made Fri Dec  6 09:53:32 2024 UTC
 61s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
 61s gpgv:                issuer "tille@debian.org"
 61s gpgv: Can't check signature: No public key
 61s dpkg-source: warning: cannot verify inline signature for ./circlator_1.5.6-12.dsc: no acceptable signature found
 62s autopkgtest [02:30:56]: testing package circlator version 1.5.6-12
 62s autopkgtest [02:30:56]: build not needed
 62s autopkgtest [02:30:56]: test run-unit-test: preparing testbed
 62s Reading package lists...
 62s Building dependency tree...
 62s Reading state information...
 62s Starting pkgProblemResolver with broken count: 0
 62s Starting 2 pkgProblemResolver with broken count: 0
 62s Done
 63s The following NEW packages will be installed:
 63s   aglfn bamtools binfmt-support bwa ca-certificates-java canu circlator
 63s   default-jre-headless fastaq fastjar fontconfig fontconfig-config
 63s   fonts-dejavu-core fonts-dejavu-mono gnuplot-data gnuplot-nox jaligner
 63s   jarwrapper java-common libaom3 libapache-pom-java
 63s   libatinject-jsr330-api-java libbamtools2.5.2 libcairo2 libcommons-codec-java
 63s   libcommons-compress-java libcommons-io-java libcommons-parent-java
 63s   libdatrie1 libde265-0 libdeflate0 liberror-prone-java libfastutil-java
 63s   libfilesys-df-perl libfontconfig1 libgd3 libgomp1 libgraphite2-3
 63s   libguava-java libharfbuzz0b libheif-plugin-aomdec libheif-plugin-libde265
 63s   libheif1 libhts3t64 libhtscodecs2 libimagequant0 libjbig0 libjpeg-turbo8
 63s   libjpeg8 libjsoncpp26 libjsr305-java liblcms2-2 liblerc4 liblua5.4-0
 63s   libnlopt0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1
 63s   libpixman-1-0 libraqm0 libsharpyuv0 libsnappy1v5 libspoa7.0.0 libssw-java
 63s   libssw0 libthai-data libthai0 libtiff6 libwebp7 libwebpmux3 libxcb-render0
 63s   libxcb-shm0 libxpm4 libxrender1 libxslt1.1 mhap mummer
 63s   openjdk-21-jre-headless prodigal python3-all python3-et-xmlfile
 63s   python3-iniconfig python3-joblib python3-lxml python3-openpyxl
 63s   python3-packaging python3-pluggy python3-pymummer python3-pysam
 63s   python3-pytest python3.12 python3.12-minimal samtools spades
 63s 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded.
 63s Need to get 110 MB of archives.
 63s After this operation, 424 MB of additional disk space will be used.
 63s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-minimal amd64 3.12.9-1 [2348 kB]
 63s Get:2 http://ftpmaster.internal/ubuntu plucky/universe amd64 binfmt-support amd64 2.2.2-7 [56.2 kB]
 63s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12 amd64 3.12.9-1 [671 kB]
 63s Get:4 http://ftpmaster.internal/ubuntu plucky/universe amd64 libbamtools2.5.2 amd64 2.5.2+dfsg-6build1 [144 kB]
 63s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB]
 63s Get:6 http://ftpmaster.internal/ubuntu plucky/universe amd64 bamtools amd64 2.5.2+dfsg-6build1 [178 kB]
 63s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 bwa amd64 0.7.18-1 [204 kB]
 63s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 ca-certificates-java all 20240118 [11.6 kB]
 63s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250213-1ubuntu1 [148 kB]
 63s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB]
 63s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 libfilesys-df-perl amd64 0.92-7build5 [11.4 kB]
 63s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 java-common all 0.76 [6852 B]
 63s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB]
 63s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
 63s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
 63s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libpcsclite1 amd64 2.3.1-1 [26.6 kB]
 63s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 openjdk-21-jre-headless amd64 21.0.6+7-1 [46.4 MB]
 66s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 default-jre-headless amd64 2:1.21-76 [3178 B]
 66s Get:19 http://ftpmaster.internal/ubuntu plucky/universe amd64 fastjar amd64 2:0.98-7 [67.1 kB]
 66s Get:20 http://ftpmaster.internal/ubuntu plucky/universe amd64 jarwrapper all 0.80 [9800 B]
 66s Get:21 http://ftpmaster.internal/ubuntu plucky/universe amd64 libapache-pom-java all 33-2 [5874 B]
 66s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-parent-java all 56-1 [10.7 kB]
 66s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-codec-java all 1.17.1-1 [302 kB]
 66s Get:24 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-io-java all 2.18.0-1 [477 kB]
 66s Get:25 http://ftpmaster.internal/ubuntu plucky/universe amd64 libcommons-compress-java all 1.27.1-2 [610 kB]
 66s Get:26 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfastutil-java all 8.5.15+dfsg-1 [20.2 MB]
 67s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 libatinject-jsr330-api-java all 1.0+ds1-6 [5076 B]
 67s Get:28 http://ftpmaster.internal/ubuntu plucky/universe amd64 liberror-prone-java all 2.18.0-1 [22.5 kB]
 67s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjsr305-java all 0.1~+svn49-12 [27.0 kB]
 67s Get:30 http://ftpmaster.internal/ubuntu plucky/universe amd64 libguava-java all 32.0.1-1 [2692 kB]
 67s Get:31 http://ftpmaster.internal/ubuntu plucky/universe amd64 jaligner all 1.0+dfsg-11 [136 kB]
 67s Get:32 http://ftpmaster.internal/ubuntu plucky/universe amd64 libssw-java amd64 1.1-15 [18.9 kB]
 67s Get:33 http://ftpmaster.internal/ubuntu plucky/universe amd64 mhap all 2.1.3+dfsg-3 [160 kB]
 67s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 aglfn all 1.7+git20191031.4036a9c-2 [30.6 kB]
 67s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 gnuplot-data all 6.0.0+dfsg1-1ubuntu3 [75.3 kB]
 67s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
 68s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
 68s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB]
 68s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB]
 68s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
 68s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
 68s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
 68s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
 68s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libcairo2 amd64 1.18.2-2 [569 kB]
 68s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
 68s Get:46 http://ftpmaster.internal/ubuntu plucky/main amd64 libaom3 amd64 3.12.0-1 [2742 kB]
 68s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-aomdec amd64 1.19.5-1build1 [11.6 kB]
 68s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libde265-0 amd64 1.0.15-1build4 [168 kB]
 68s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif-plugin-libde265 amd64 1.19.5-1build1 [9074 B]
 68s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 libheif1 amd64 1.19.5-1build1 [422 kB]
 68s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB]
 68s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
 68s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB]
 68s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB]
 68s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB]
 68s Get:56 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
 68s Get:57 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
 68s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
 68s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB]
 68s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB]
 68s Get:61 http://ftpmaster.internal/ubuntu plucky/main amd64 libgd3 amd64 2.3.3-12ubuntu3 [127 kB]
 68s Get:62 http://ftpmaster.internal/ubuntu plucky/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB]
 68s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB]
 68s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
 68s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB]
 68s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
 68s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libpango-1.0-0 amd64 1.56.1-1 [255 kB]
 68s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangoft2-1.0-0 amd64 1.56.1-1 [52.6 kB]
 68s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libpangocairo-1.0-0 amd64 1.56.1-1 [29.1 kB]
 68s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB]
 68s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 gnuplot-nox amd64 6.0.0+dfsg1-1ubuntu3 [989 kB]
 68s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 canu amd64 2.2+dfsg-5 [1536 kB]
 68s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhtscodecs2 amd64 1.6.1-1 [132 kB]
 68s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhts3t64 amd64 1.21+ds-1 [514 kB]
 68s Get:75 http://ftpmaster.internal/ubuntu plucky/universe amd64 samtools amd64 1.21-1 [655 kB]
 68s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 fastaq all 3.17.0-9 [48.2 kB]
 68s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-et-xmlfile all 2.0.0-1 [79.4 kB]
 68s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu2 [175 kB]
 68s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.1-1 [1831 kB]
 68s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-openpyxl all 3.1.5+dfsg-1 [152 kB]
 68s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB]
 68s Get:82 http://ftpmaster.internal/ubuntu plucky/universe amd64 mummer amd64 3.23+dfsg-8 [685 kB]
 68s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pymummer all 0.11.0-4 [17.1 kB]
 68s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pysam amd64 0.23.0+ds-1 [4558 kB]
 69s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 prodigal amd64 1:2.6.3-6 [643 kB]
 69s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 circlator all 1.5.6-12 [4617 kB]
 69s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 libspoa7.0.0 amd64 4.1.4-2 [79.1 kB]
 69s Get:88 http://ftpmaster.internal/ubuntu plucky/universe amd64 libssw0 amd64 1.1-15 [22.5 kB]
 69s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.13.1-1~exp2 [894 B]
 69s Get:90 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B]
 69s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.4.2-2 [205 kB]
 69s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB]
 69s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.4-1 [252 kB]
 69s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 libnlopt0 amd64 2.7.1-6ubuntu2 [251 kB]
 69s Get:95 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 spades amd64 4.0.0+dfsg1-2 [8064 kB]
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 78s Setting up python3-all (3.13.1-1~exp2) ...
 78s Setting up libnlopt0:amd64 (2.7.1-6ubuntu2) ...
 78s Setting up libxcb-shm0:amd64 (1.17.0-2) ...
 78s Setting up libgomp1:amd64 (15-20250213-1ubuntu1) ...
 78s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ...
 78s Setting up libssw-java (1.1-15) ...
 78s Setting up libsnappy1v5:amd64 (1.2.1-1) ...
 78s Setting up python3-packaging (24.2-1) ...
 78s Setting up libjsoncpp26:amd64 (1.9.6-3) ...
 78s Setting up aglfn (1.7+git20191031.4036a9c-2) ...
 78s Setting up libapache-pom-java (33-2) ...
 78s Setting up libatinject-jsr330-api-java (1.0+ds1-6) ...
 78s Setting up libimagequant0:amd64 (2.18.0-1build1) ...
 78s Setting up fonts-dejavu-mono (2.37-8) ...
 78s Setting up libspoa7.0.0:amd64 (4.1.4-2) ...
 78s Setting up binfmt-support (2.2.2-7) ...
 78s update-binfmts: warning: python3.13 already enabled in kernel.
 79s Created symlink '/etc/systemd/system/multi-user.target.wants/binfmt-support.service' → '/usr/lib/systemd/system/binfmt-support.service'.

 79s Setting up fonts-dejavu-core (2.37-8) ...
 79s Setting up libpcsclite1:amd64 (2.3.1-1) ...
 79s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
 79s Setting up libbamtools2.5.2:amd64 (2.5.2+dfsg-6build1) ...
 79s Setting up python3-pluggy (1.5.0-1) ...
 79s Setting up libwebp7:amd64 (1.5.0-0.1) ...
 79s Setting up bamtools (2.5.2+dfsg-6build1) ...
 79s Setting up libxslt1.1:amd64 (1.1.39-0exp1ubuntu2) ...
 79s Setting up mummer (3.23+dfsg-8) ...
 79s Setting up python3-et-xmlfile (2.0.0-1) ...
 80s Setting up libhts3t64:amd64 (1.21+ds-1) ...
 80s Setting up liblua5.4-0:amd64 (5.4.7-1) ...
 80s Setting up libharfbuzz0b:amd64 (10.2.0-1) ...
 80s Setting up libthai-data (0.1.29-2build1) ...
 80s Setting up ca-certificates-java (20240118) ...
 80s No JRE found. Skipping Java certificates setup.
 80s Setting up libde265-0:amd64 (1.0.15-1build4) ...
 80s Setting up libwebpmux3:amd64 (1.5.0-0.1) ...
 80s Setting up libssw0:amd64 (1.1-15) ...
 80s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
 80s Setting up gnuplot-data (6.0.0+dfsg1-1ubuntu3) ...
 80s Setting up python3-pysam (0.23.0+ds-1) ...
 80s Setting up openjdk-21-jre-headless:amd64 (21.0.6+7-1) ...
 80s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode
 80s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode
 80s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
 80s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
 80s update-alternatives: using /usr/lib/jvm/java-21-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
 80s Setting up jarwrapper (0.80) ...
 80s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
 80s Setting up python3-pytest (8.3.4-1) ...
 81s Setting up libcommons-parent-java (56-1) ...
 81s Setting up samtools (1.21-1) ...
 81s Setting up libthai0:amd64 (0.1.29-2build1) ...
 81s Setting up libraqm0:amd64 (0.10.2-1) ...
 81s Setting up python3-lxml:amd64 (5.3.1-1) ...
 81s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ...
 81s Setting up spades (4.0.0+dfsg1-2) ...
 81s Setting up libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ...
 81s Setting up libcommons-codec-java (1.17.1-1) ...
 81s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
 83s Regenerating fonts cache... done.
 83s Setting up libcommons-io-java (2.18.0-1) ...
 83s Setting up fastaq (3.17.0-9) ...
 83s Setting up libpango-1.0-0:amd64 (1.56.1-1) ...
 83s Setting up libcairo2:amd64 (1.18.2-2) ...
 83s Setting up python3-pymummer (0.11.0-4) ...
 83s Setting up python3-openpyxl (3.1.5+dfsg-1) ...
 84s Setting up libpangoft2-1.0-0:amd64 (1.56.1-1) ...
 84s Setting up libpangocairo-1.0-0:amd64 (1.56.1-1) ...
 84s Setting up libcommons-compress-java (1.27.1-2) ...
 84s Setting up libheif-plugin-aomdec:amd64 (1.19.5-1build1) ...
 84s Setting up libheif-plugin-libde265:amd64 (1.19.5-1build1) ...
 84s Setting up liberror-prone-java (2.18.0-1) ...
 84s Setting up libheif1:amd64 (1.19.5-1build1) ...
 84s Setting up libguava-java (32.0.1-1) ...
 84s Setting up libgd3:amd64 (2.3.3-12ubuntu3) ...
 84s Setting up gnuplot-nox (6.0.0+dfsg1-1ubuntu3) ...
 84s update-alternatives: using /usr/bin/gnuplot-nox to provide /usr/bin/gnuplot (gnuplot) in auto mode
 84s Processing triggers for install-info (7.1.1-1) ...
 84s Processing triggers for libc-bin (2.40-4ubuntu1) ...
 84s Processing triggers for systemd (257.2-3ubuntu1) ...
 84s Processing triggers for man-db (2.13.0-1) ...
 86s Processing triggers for ca-certificates-java (20240118) ...
 86s Adding debian:ACCVRAIZ1.pem
 86s Adding debian:AC_RAIZ_FNMT-RCM.pem
 86s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem
 86s Adding debian:ANF_Secure_Server_Root_CA.pem
 86s Adding debian:Actalis_Authentication_Root_CA.pem
 86s Adding debian:AffirmTrust_Commercial.pem
 86s Adding debian:AffirmTrust_Networking.pem
 86s Adding debian:AffirmTrust_Premium.pem
 86s Adding debian:AffirmTrust_Premium_ECC.pem
 86s Adding debian:Amazon_Root_CA_1.pem
 86s Adding debian:Amazon_Root_CA_2.pem
 86s Adding debian:Amazon_Root_CA_3.pem
 86s Adding debian:Amazon_Root_CA_4.pem
 86s Adding debian:Atos_TrustedRoot_2011.pem
 86s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem
 86s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem
 86s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
 86s Adding debian:BJCA_Global_Root_CA1.pem
 86s Adding debian:BJCA_Global_Root_CA2.pem
 86s Adding debian:Baltimore_CyberTrust_Root.pem
 86s Adding debian:Buypass_Class_2_Root_CA.pem
 86s Adding debian:Buypass_Class_3_Root_CA.pem
 86s Adding debian:CA_Disig_Root_R2.pem
 86s Adding debian:CFCA_EV_ROOT.pem
 86s Adding debian:COMODO_Certification_Authority.pem
 86s Adding debian:COMODO_ECC_Certification_Authority.pem
 86s Adding debian:COMODO_RSA_Certification_Authority.pem
 86s Adding debian:Certainly_Root_E1.pem
 86s Adding debian:Certainly_Root_R1.pem
 86s Adding debian:Certigna.pem
 86s Adding debian:Certigna_Root_CA.pem
 86s Adding debian:Certum_EC-384_CA.pem
 86s Adding debian:Certum_Trusted_Network_CA.pem
 86s Adding debian:Certum_Trusted_Network_CA_2.pem
 86s Adding debian:Certum_Trusted_Root_CA.pem
 86s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem
 86s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem
 86s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem
 86s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem
 86s Adding debian:Comodo_AAA_Services_root.pem
 86s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem
 86s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem
 86s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
 86s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
 86s Adding debian:DigiCert_Assured_ID_Root_CA.pem
 86s Adding debian:DigiCert_Assured_ID_Root_G2.pem
 86s Adding debian:DigiCert_Assured_ID_Root_G3.pem
 86s Adding debian:DigiCert_Global_Root_CA.pem
 86s Adding debian:DigiCert_Global_Root_G2.pem
 86s Adding debian:DigiCert_Global_Root_G3.pem
 86s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
 86s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem
 86s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem
 86s Adding debian:DigiCert_Trusted_Root_G4.pem
 86s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
 86s Adding debian:Entrust_Root_Certification_Authority.pem
 86s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
 86s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
 86s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem
 86s Adding debian:FIRMAPROFESIONAL_CA_ROOT-A_WEB.pem
 86s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem
 86s Adding debian:GLOBALTRUST_2020.pem
 86s Adding debian:GTS_Root_R1.pem
 86s Adding debian:GTS_Root_R2.pem
 86s Adding debian:GTS_Root_R3.pem
 86s Adding debian:GTS_Root_R4.pem
 86s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
 86s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
 86s Adding debian:GlobalSign_Root_CA.pem
 86s Adding debian:GlobalSign_Root_CA_-_R3.pem
 86s Adding debian:GlobalSign_Root_CA_-_R6.pem
 86s Adding debian:GlobalSign_Root_E46.pem
 86s Adding debian:GlobalSign_Root_R46.pem
 86s Adding debian:Go_Daddy_Class_2_CA.pem
 86s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
 86s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem
 86s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem
 86s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
 86s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
 86s Adding debian:HiPKI_Root_CA_-_G1.pem
 86s Adding debian:Hongkong_Post_Root_CA_3.pem
 86s Adding debian:ISRG_Root_X1.pem
 86s Adding debian:ISRG_Root_X2.pem
 86s Adding debian:IdenTrust_Commercial_Root_CA_1.pem
 86s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
 86s Adding debian:Izenpe.com.pem
 86s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
 86s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem
 86s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem
 86s Adding debian:NAVER_Global_Root_Certification_Authority.pem
 86s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
 86s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
 86s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem
 86s Adding debian:QuoVadis_Root_CA_1_G3.pem
 86s Adding debian:QuoVadis_Root_CA_2.pem
 86s Adding debian:QuoVadis_Root_CA_2_G3.pem
 86s Adding debian:QuoVadis_Root_CA_3.pem
 86s Adding debian:QuoVadis_Root_CA_3_G3.pem
 86s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem
 86s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem
 86s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem
 86s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem
 86s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem
 86s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem
 86s Adding debian:SZAFIR_ROOT_CA2.pem
 86s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem
 86s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem
 86s Adding debian:SecureSign_RootCA11.pem
 86s Adding debian:SecureSign_Root_CA12.pem
 86s Adding debian:SecureSign_Root_CA14.pem
 86s Adding debian:SecureSign_Root_CA15.pem
 86s Adding debian:SecureTrust_CA.pem
 86s Adding debian:Secure_Global_CA.pem
 86s Adding debian:Security_Communication_ECC_RootCA1.pem
 86s Adding debian:Security_Communication_RootCA2.pem
 86s Adding debian:Security_Communication_RootCA3.pem
 86s Adding debian:Starfield_Class_2_CA.pem
 86s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
 86s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
 86s Adding debian:SwissSign_Gold_CA_-_G2.pem
 86s Adding debian:SwissSign_Silver_CA_-_G2.pem
 86s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
 86s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
 86s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
 86s Adding debian:TWCA_CYBER_Root_CA.pem
 86s Adding debian:TWCA_Global_Root_CA.pem
 86s Adding debian:TWCA_Root_Certification_Authority.pem
 86s Adding debian:Telekom_Security_TLS_ECC_Root_2020.pem
 86s Adding debian:Telekom_Security_TLS_RSA_Root_2023.pem
 86s Adding debian:TeliaSonera_Root_CA_v1.pem
 86s Adding debian:Telia_Root_CA_v2.pem
 86s Adding debian:TrustAsia_Global_Root_CA_G3.pem
 86s Adding debian:TrustAsia_Global_Root_CA_G4.pem
 86s Adding debian:Trustwave_Global_Certification_Authority.pem
 86s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem
 86s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem
 86s Adding debian:TunTrust_Root_CA.pem
 86s Adding debian:UCA_Extended_Validation_Root.pem
 86s Adding debian:UCA_Global_G2_Root.pem
 86s Adding debian:USERTrust_ECC_Certification_Authority.pem
 86s Adding debian:USERTrust_RSA_Certification_Authority.pem
 86s Adding debian:XRamp_Global_CA_Root.pem
 86s Adding debian:certSIGN_ROOT_CA.pem
 86s Adding debian:certSIGN_Root_CA_G2.pem
 86s Adding debian:e-Szigno_Root_CA_2017.pem
 86s Adding debian:ePKI_Root_Certification_Authority.pem
 86s Adding debian:emSign_ECC_Root_CA_-_C3.pem
 86s Adding debian:emSign_ECC_Root_CA_-_G3.pem
 86s Adding debian:emSign_Root_CA_-_C1.pem
 86s Adding debian:emSign_Root_CA_-_G1.pem
 86s Adding debian:vTrus_ECC_Root_CA.pem
 86s Adding debian:vTrus_Root_CA.pem
 86s done.
 86s Setting up default-jre-headless (2:1.21-76) ...
 86s Setting up jaligner (1.0+dfsg-11) ...
 86s Setting up mhap (2.1.3+dfsg-3) ...
 86s Setting up canu (2.2+dfsg-5) ...
 86s Setting up circlator (1.5.6-12) ...
 88s autopkgtest [02:31:22]: testbed environment configured for cross-architecture building
 88s autopkgtest [02:31:22]: test run-unit-test: [-----------------------
 88s + pkg=circlator
 88s + export LC_ALL=C.UTF-8
 88s + LC_ALL=C.UTF-8
 88s + '[' /tmp/autopkgtest.q83I57/autopkgtest_tmp = '' ']'
 88s + cp -a /usr/share/doc/circlator/examples/assemble_test.py /usr/share/doc/circlator/examples/assembly_test.py /usr/share/doc/circlator/examples/bamfilter_test.py /usr/share/doc/circlator/examples/clean_test.py /usr/share/doc/circlator/examples/common_test.py /usr/share/doc/circlator/examples/data.tar.xz /usr/share/doc/circlator/examples/dnaa_test.py /usr/share/doc/circlator/examples/external_progs_test.py /usr/share/doc/circlator/examples/mapping_test.py /usr/share/doc/circlator/examples/merge_test.py /usr/share/doc/circlator/examples/minimus2_test.py /usr/share/doc/circlator/examples/start_fixer_test.py /tmp/autopkgtest.q83I57/autopkgtest_tmp
 88s + cd /tmp/autopkgtest.q83I57/autopkgtest_tmp
 88s + tar xaf data.tar.xz
 88s + sed -i 's/data_dir = os.path.join(modules_dir, '\''tests'\'', '\''data'\'')/data_dir = os.path.join(os.getcwd(), '\''data'\'')/' ./assemble_test.py ./assembly_test.py ./bamfilter_test.py ./clean_test.py ./common_test.py ./dnaa_test.py ./external_progs_test.py ./mapping_test.py ./merge_test.py ./minimus2_test.py ./start_fixer_test.py
 88s ++ py3versions --supported
 88s + for py in $(py3versions --supported 2> /dev/null)
 88s + eval dpkg-architecture --is amd64
 88s ++ dpkg-architecture --is amd64
 88s + python3.12 -m pytest -v -k 'not (test_build_spades_kmers or test_make_spades_command)'
 88s ============================= test session starts ==============================
 88s platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.12
 88s cachedir: .pytest_cache
 88s rootdir: /tmp/autopkgtest.q83I57/autopkgtest_tmp
 88s plugins: typeguard-4.4.1
 89s collecting ... collected 115 items / 2 deselected / 113 selected
 89s 
 89s assemble_test.py::TestAssembleCanu::test_make_canu_command PASSED        [  0%]
 89s assemble_test.py::TestAssembleCanu::test_rename_canu_contigs PASSED      [  1%]
 89s assembly_test.py::TestAssembly::test_circular_contigs_from_canu_gfa PASSED [  2%]
 89s assembly_test.py::TestAssembly::test_circular_contigs_from_spades_after_3_6_1 PASSED [  3%]
 89s assembly_test.py::TestAssembly::test_circular_contigs_from_spades_before_3_6_1 PASSED [  4%]
 89s assembly_test.py::TestAssembly::test_circular_contigs_just_fasta PASSED  [  5%]
 89s assembly_test.py::TestAssembly::test_circular_contigs_spades_post_3_6_1 PASSED [  6%]
 89s assembly_test.py::TestAssembly::test_circular_contigs_spades_pre_3_6_1 PASSED [  7%]
 89s assembly_test.py::TestAssembly::test_circular_edges_to_edge_numbers_dict PASSED [  7%]
 89s assembly_test.py::TestAssembly::test_get_contigs PASSED                  [  8%]
 89s assembly_test.py::TestAssembly::test_init_file_not_dir PASSED            [  9%]
 89s assembly_test.py::TestAssembly::test_init_post_3_6_1_ok PASSED           [ 10%]
 89s assembly_test.py::TestAssembly::test_init_pre_3_6_1_ok PASSED            [ 11%]
 89s assembly_test.py::TestAssembly::test_init_raises_error PASSED            [ 12%]
 89s assembly_test.py::TestAssembly::test_spades_contigs_paths_to_dict PASSED [ 13%]
 89s bamfilter_test.py::TestBamfilter::test_all_reads_from_contig PASSED      [ 14%]
 89s bamfilter_test.py::TestBamfilter::test_break_reads PASSED                [ 15%]
 89s bamfilter_test.py::TestBamfilter::test_check_contigs_to_use PASSED       [ 15%]
 89s bamfilter_test.py::TestBamfilter::test_exclude_region PASSED             [ 16%]
 89s bamfilter_test.py::TestBamfilter::test_get_all_unmapped_reads PASSED     [ 17%]
 89s bamfilter_test.py::TestBamfilter::test_get_contigs_to_use PASSED         [ 18%]
 89s bamfilter_test.py::TestBamfilter::test_get_ref_lengths PASSED            [ 19%]
 89s bamfilter_test.py::TestBamfilter::test_get_region_end PASSED             [ 20%]
 89s bamfilter_test.py::TestBamfilter::test_get_region_start PASSED           [ 21%]
 89s bamfilter_test.py::TestBamfilter::test_run_discard_unmapped_no_quals PASSED [ 22%]
 89s bamfilter_test.py::TestBamfilter::test_run_keep_unmapped_no_quals PASSED [ 23%]
 89s bamfilter_test.py::TestBamfilter::test_run_keep_unmapped_with_quals PASSED [ 23%]
 89s clean_test.py::TestClean::test_clean_contigs PASSED                      [ 24%]
 89s clean_test.py::TestClean::test_collapse_list_of_sets PASSED              [ 25%]
 89s clean_test.py::TestClean::test_containing_contigs PASSED                 [ 26%]
 89s clean_test.py::TestClean::test_contains PASSED                           [ 27%]
 89s clean_test.py::TestClean::test_expand_containing_using_transitivity PASSED [ 28%]
 89s clean_test.py::TestClean::test_get_all_containing PASSED                 [ 29%]
 89s clean_test.py::TestClean::test_get_containing_contigs PASSED             [ 30%]
 89s clean_test.py::TestClean::test_get_contigs_to_keep PASSED                [ 30%]
 89s clean_test.py::TestClean::test_get_identical_contigs PASSED              [ 31%]
 89s clean_test.py::TestClean::test_infinite_recursion PASSED                 [ 32%]
 89s clean_test.py::TestClean::test_load_nucmer_hits PASSED                   [ 33%]
 89s clean_test.py::TestClean::test_longest_contig PASSED                     [ 34%]
 89s clean_test.py::TestClean::test_remove_identical_contigs PASSED           [ 35%]
 89s clean_test.py::TestClean::test_remove_small_contigs PASSED               [ 36%]
 89s clean_test.py::TestClean::test_write_log PASSED                          [ 37%]
 89s common_test.py::TestCommon::test_check_files_exist PASSED                [ 38%]
 89s dnaa_test.py::TestDnaa::test_append_stop_to_seq PASSED                   [ 38%]
 89s dnaa_test.py::TestDnaa::test_check_sequence PASSED                       [ 39%]
 89s dnaa_test.py::TestDnaa::test_get_uniprot_url PASSED                      [ 40%]
 89s dnaa_test.py::TestDnaa::test_header_matches_regex PASSED                 [ 41%]
 89s dnaa_test.py::TestDnaa::test_header_to_genus_species PASSED              [ 42%]
 89s dnaa_test.py::TestDnaa::test_reverse_translate PASSED                    [ 43%]
 89s external_progs_test.py::TestExternalProgs::test_bwa_version PASSED       [ 44%]
 89s external_progs_test.py::TestExternalProgs::test_canu_version PASSED      [ 45%]
 89s external_progs_test.py::TestExternalProgs::test_nucmer_version PASSED    [ 46%]
 89s external_progs_test.py::TestExternalProgs::test_prodigal_version PASSED  [ 46%]
 89s external_progs_test.py::TestExternalProgs::test_samtools_original_version PASSED [ 47%]
 89s external_progs_test.py::TestExternalProgs::test_samtools_version PASSED  [ 48%]
 89s external_progs_test.py::TestExternalProgs::test_spades_version PASSED    [ 49%]
 89s mapping_test.py::TestMapping::test_aligned_read_to_read PASSED           [ 50%]
 89s mapping_test.py::TestMapping::test_bwa_index PASSED                      [ 51%]
 89s mapping_test.py::TestMapping::test_bwa_index_clean PASSED                [ 52%]
 89s mapping_test.py::TestMapping::test_bwa_mem PASSED                        [ 53%]
 89s merge_test.py::TestMerge::test_can_circularise PASSED                    [ 53%]
 89s merge_test.py::TestMerge::test_contigs_dict_to_file PASSED               [ 54%]
 89s merge_test.py::TestMerge::test_filter_bridging_contigs PASSED            [ 55%]
 89s merge_test.py::TestMerge::test_get_hit_nearest_ref_end PASSED            [ 56%]
 89s merge_test.py::TestMerge::test_get_hit_nearest_ref_start PASSED          [ 57%]
 89s merge_test.py::TestMerge::test_get_longest_hit_at_qry_end PASSED         [ 58%]
 89s merge_test.py::TestMerge::test_get_longest_hit_at_qry_start PASSED       [ 59%]
 89s merge_test.py::TestMerge::test_get_longest_hit_at_ref_end PASSED         [ 60%]
 89s merge_test.py::TestMerge::test_get_longest_hit_at_ref_start PASSED       [ 61%]
 89s merge_test.py::TestMerge::test_get_longest_hit_by_ref_length PASSED      [ 61%]
 89s merge_test.py::TestMerge::test_get_possible_circular_ref_contigs PASSED  [ 62%]
 89s merge_test.py::TestMerge::test_get_possible_circular_ref_contigs_same_best_hits PASSED [ 63%]
 89s merge_test.py::TestMerge::test_get_possible_query_bridging_contigs PASSED [ 64%]
 89s merge_test.py::TestMerge::test_get_spades_circular_nodes PASSED          [ 65%]
 89s merge_test.py::TestMerge::test_has_qry_hit_longer_than PASSED            [ 66%]
 89s merge_test.py::TestMerge::test_hits_hashed_by_query PASSED               [ 67%]
 89s merge_test.py::TestMerge::test_hits_have_same_query PASSED               [ 68%]
 89s merge_test.py::TestMerge::test_hits_have_same_reference PASSED           [ 69%]
 89s merge_test.py::TestMerge::test_index_fasta PASSED                        [ 69%]
 89s merge_test.py::TestMerge::test_is_at_qry_end PASSED                      [ 70%]
 89s merge_test.py::TestMerge::test_is_at_qry_start PASSED                    [ 71%]
 89s merge_test.py::TestMerge::test_is_at_ref_end PASSED                      [ 72%]
 89s merge_test.py::TestMerge::test_is_at_ref_start PASSED                    [ 73%]
 89s merge_test.py::TestMerge::test_load_nucmer_hits PASSED                   [ 74%]
 89s merge_test.py::TestMerge::test_make_circularised_contig_1 PASSED         [ 75%]
 89s merge_test.py::TestMerge::test_make_circularised_contig_2 PASSED         [ 76%]
 89s merge_test.py::TestMerge::test_make_new_contig_from_nucmer_and_spades_not_hit PASSED [ 76%]
 89s merge_test.py::TestMerge::test_make_new_contig_from_nucmer_and_spades_with_hit PASSED [ 77%]
 89s merge_test.py::TestMerge::test_merge_bridged_contig_pair1 PASSED         [ 78%]
 89s merge_test.py::TestMerge::test_merge_bridged_contig_pair2 PASSED         [ 79%]
 89s merge_test.py::TestMerge::test_merge_bridged_contig_pair3 PASSED         [ 80%]
 89s merge_test.py::TestMerge::test_merge_bridged_contig_pair4 PASSED         [ 81%]
 89s merge_test.py::TestMerge::test_min_qry_hit_length PASSED                 [ 82%]
 89s merge_test.py::TestMerge::test_orientation_ok_to_bridge_contigs PASSED   [ 83%]
 89s merge_test.py::TestMerge::test_remove_keys_from_dict_with_nonunique_values PASSED [ 84%]
 89s merge_test.py::TestMerge::test_write_act_files PASSED                    [ 84%]
 89s minimus2_test.py::TestMinimus2::test_run_initial_merge SKIPPED (Amos...) [ 85%]
 89s minimus2_test.py::TestMinimus2::test_run_minimus2 SKIPPED (Amos is n...) [ 86%]
 89s minimus2_test.py::TestMinimus2::test_run_minimus2_on_each_contig SKIPPED [ 87%]
 89s minimus2_test.py::TestMinimus2::test_run_minimus2_on_one_contig_will_not_work SKIPPED [ 88%]
 89s minimus2_test.py::TestMinimus2::test_run_minimus2_on_one_contig_will_work SKIPPED [ 89%]
 89s minimus2_test.py::TestMinimus2::test_write_split_contig SKIPPED (Amo...) [ 90%]
 89s start_fixer_test.py::TestStartFixer::test_find_circular_using_prodigal PASSED [ 91%]
 89s start_fixer_test.py::TestStartFixer::test_find_circular_using_promer PASSED [ 92%]
 89s start_fixer_test.py::TestStartFixer::test_init PASSED                    [ 92%]
 89s start_fixer_test.py::TestStartFixer::test_max_length_from_fasta_file PASSED [ 93%]
 89s start_fixer_test.py::TestStartFixer::test_rearrange_contigs PASSED       [ 94%]
 89s start_fixer_test.py::TestStartFixer::test_rename_contigs PASSED          [ 95%]
 89s start_fixer_test.py::TestStartFixer::test_run_bit_of_everything PASSED   [ 96%]
 89s start_fixer_test.py::TestStartFixer::test_run_ignore_all PASSED          [ 97%]
 90s start_fixer_test.py::TestStartFixer::test_run_none_for_prodigal PASSED   [ 98%]
 90s start_fixer_test.py::TestStartFixer::test_write_fasta_plus_circularized_ends PASSED [ 99%]
 90s start_fixer_test.py::TestStartFixer::test_write_renamed_contigs PASSED   [100%]
 90s 
 90s =============================== warnings summary ===============================
 90s ../../../usr/lib/python3/dist-packages/pyfastaq/__init__.py:3
 90s   /usr/lib/python3/dist-packages/pyfastaq/__init__.py:3: DeprecationWarning: Unimplemented abstract methods {'read_text', 'locate_file'}
 90s     __version__ = Distribution().from_name('pyfastaq').version
 90s 
 90s ../../../usr/lib/python3/dist-packages/circlator/__init__.py:1
 90s   /usr/lib/python3/dist-packages/circlator/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
 90s     from pkg_resources import get_distribution
 90s 
 90s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
 90s =========== 107 passed, 6 skipped, 2 deselected, 2 warnings in 1.27s ===========
 90s + for py in $(py3versions --supported 2> /dev/null)
 90s + eval dpkg-architecture --is amd64
 90s ++ dpkg-architecture --is amd64
 90s + python3.13 -m pytest -v -k 'not (test_build_spades_kmers or test_make_spades_command)'
 90s ============================= test session starts ==============================
 90s platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.13
 90s cachedir: .pytest_cache
 90s rootdir: /tmp/autopkgtest.q83I57/autopkgtest_tmp
 90s plugins: typeguard-4.4.1
 90s collecting ... collected 115 items / 2 deselected / 113 selected
 90s 
 90s assemble_test.py::TestAssembleCanu::test_make_canu_command PASSED        [  0%]
 90s assemble_test.py::TestAssembleCanu::test_rename_canu_contigs PASSED      [  1%]
 90s assembly_test.py::TestAssembly::test_circular_contigs_from_canu_gfa PASSED [  2%]
 90s assembly_test.py::TestAssembly::test_circular_contigs_from_spades_after_3_6_1 PASSED [  3%]
 90s assembly_test.py::TestAssembly::test_circular_contigs_from_spades_before_3_6_1 PASSED [  4%]
 90s assembly_test.py::TestAssembly::test_circular_contigs_just_fasta PASSED  [  5%]
 90s assembly_test.py::TestAssembly::test_circular_contigs_spades_post_3_6_1 PASSED [  6%]
 90s assembly_test.py::TestAssembly::test_circular_contigs_spades_pre_3_6_1 PASSED [  7%]
 90s assembly_test.py::TestAssembly::test_circular_edges_to_edge_numbers_dict PASSED [  7%]
 90s assembly_test.py::TestAssembly::test_get_contigs PASSED                  [  8%]
 90s assembly_test.py::TestAssembly::test_init_file_not_dir PASSED            [  9%]
 90s assembly_test.py::TestAssembly::test_init_post_3_6_1_ok PASSED           [ 10%]
 90s assembly_test.py::TestAssembly::test_init_pre_3_6_1_ok PASSED            [ 11%]
 90s assembly_test.py::TestAssembly::test_init_raises_error PASSED            [ 12%]
 90s assembly_test.py::TestAssembly::test_spades_contigs_paths_to_dict PASSED [ 13%]
 90s bamfilter_test.py::TestBamfilter::test_all_reads_from_contig PASSED      [ 14%]
 90s bamfilter_test.py::TestBamfilter::test_break_reads PASSED                [ 15%]
 90s bamfilter_test.py::TestBamfilter::test_check_contigs_to_use PASSED       [ 15%]
 90s bamfilter_test.py::TestBamfilter::test_exclude_region PASSED             [ 16%]
 90s bamfilter_test.py::TestBamfilter::test_get_all_unmapped_reads PASSED     [ 17%]
 90s bamfilter_test.py::TestBamfilter::test_get_contigs_to_use PASSED         [ 18%]
 90s bamfilter_test.py::TestBamfilter::test_get_ref_lengths PASSED            [ 19%]
 90s bamfilter_test.py::TestBamfilter::test_get_region_end PASSED             [ 20%]
 90s bamfilter_test.py::TestBamfilter::test_get_region_start PASSED           [ 21%]
 90s bamfilter_test.py::TestBamfilter::test_run_discard_unmapped_no_quals PASSED [ 22%]
 90s bamfilter_test.py::TestBamfilter::test_run_keep_unmapped_no_quals PASSED [ 23%]
 90s bamfilter_test.py::TestBamfilter::test_run_keep_unmapped_with_quals PASSED [ 23%]
 90s clean_test.py::TestClean::test_clean_contigs PASSED                      [ 24%]
 90s clean_test.py::TestClean::test_collapse_list_of_sets PASSED              [ 25%]
 90s clean_test.py::TestClean::test_containing_contigs PASSED                 [ 26%]
 90s clean_test.py::TestClean::test_contains PASSED                           [ 27%]
 90s clean_test.py::TestClean::test_expand_containing_using_transitivity PASSED [ 28%]
 90s clean_test.py::TestClean::test_get_all_containing PASSED                 [ 29%]
 90s clean_test.py::TestClean::test_get_containing_contigs PASSED             [ 30%]
 90s clean_test.py::TestClean::test_get_contigs_to_keep PASSED                [ 30%]
 90s clean_test.py::TestClean::test_get_identical_contigs PASSED              [ 31%]
 90s clean_test.py::TestClean::test_infinite_recursion PASSED                 [ 32%]
 90s clean_test.py::TestClean::test_load_nucmer_hits PASSED                   [ 33%]
 90s clean_test.py::TestClean::test_longest_contig PASSED                     [ 34%]
 90s clean_test.py::TestClean::test_remove_identical_contigs PASSED           [ 35%]
 90s clean_test.py::TestClean::test_remove_small_contigs PASSED               [ 36%]
 90s clean_test.py::TestClean::test_write_log PASSED                          [ 37%]
 90s common_test.py::TestCommon::test_check_files_exist PASSED                [ 38%]
 90s dnaa_test.py::TestDnaa::test_append_stop_to_seq PASSED                   [ 38%]
 90s dnaa_test.py::TestDnaa::test_check_sequence PASSED                       [ 39%]
 90s dnaa_test.py::TestDnaa::test_get_uniprot_url PASSED                      [ 40%]
 90s dnaa_test.py::TestDnaa::test_header_matches_regex PASSED                 [ 41%]
 90s dnaa_test.py::TestDnaa::test_header_to_genus_species PASSED              [ 42%]
 90s dnaa_test.py::TestDnaa::test_reverse_translate PASSED                    [ 43%]
 90s external_progs_test.py::TestExternalProgs::test_bwa_version PASSED       [ 44%]
 90s external_progs_test.py::TestExternalProgs::test_canu_version PASSED      [ 45%]
 90s external_progs_test.py::TestExternalProgs::test_nucmer_version PASSED    [ 46%]
 90s external_progs_test.py::TestExternalProgs::test_prodigal_version PASSED  [ 46%]
 90s external_progs_test.py::TestExternalProgs::test_samtools_original_version PASSED [ 47%]
 90s external_progs_test.py::TestExternalProgs::test_samtools_version PASSED  [ 48%]
 90s external_progs_test.py::TestExternalProgs::test_spades_version PASSED    [ 49%]
 90s mapping_test.py::TestMapping::test_aligned_read_to_read PASSED           [ 50%]
 91s mapping_test.py::TestMapping::test_bwa_index PASSED                      [ 51%]
 91s mapping_test.py::TestMapping::test_bwa_index_clean PASSED                [ 52%]
 91s mapping_test.py::TestMapping::test_bwa_mem PASSED                        [ 53%]
 91s merge_test.py::TestMerge::test_can_circularise PASSED                    [ 53%]
 91s merge_test.py::TestMerge::test_contigs_dict_to_file PASSED               [ 54%]
 91s merge_test.py::TestMerge::test_filter_bridging_contigs PASSED            [ 55%]
 91s merge_test.py::TestMerge::test_get_hit_nearest_ref_end PASSED            [ 56%]
 91s merge_test.py::TestMerge::test_get_hit_nearest_ref_start PASSED          [ 57%]
 91s merge_test.py::TestMerge::test_get_longest_hit_at_qry_end PASSED         [ 58%]
 91s merge_test.py::TestMerge::test_get_longest_hit_at_qry_start PASSED       [ 59%]
 91s merge_test.py::TestMerge::test_get_longest_hit_at_ref_end PASSED         [ 60%]
 91s merge_test.py::TestMerge::test_get_longest_hit_at_ref_start PASSED       [ 61%]
 91s merge_test.py::TestMerge::test_get_longest_hit_by_ref_length PASSED      [ 61%]
 91s merge_test.py::TestMerge::test_get_possible_circular_ref_contigs PASSED  [ 62%]
 91s merge_test.py::TestMerge::test_get_possible_circular_ref_contigs_same_best_hits PASSED [ 63%]
 91s merge_test.py::TestMerge::test_get_possible_query_bridging_contigs PASSED [ 64%]
 91s merge_test.py::TestMerge::test_get_spades_circular_nodes PASSED          [ 65%]
 91s merge_test.py::TestMerge::test_has_qry_hit_longer_than PASSED            [ 66%]
 91s merge_test.py::TestMerge::test_hits_hashed_by_query PASSED               [ 67%]
 91s merge_test.py::TestMerge::test_hits_have_same_query PASSED               [ 68%]
 91s merge_test.py::TestMerge::test_hits_have_same_reference PASSED           [ 69%]
 91s merge_test.py::TestMerge::test_index_fasta PASSED                        [ 69%]
 91s merge_test.py::TestMerge::test_is_at_qry_end PASSED                      [ 70%]
 91s merge_test.py::TestMerge::test_is_at_qry_start PASSED                    [ 71%]
 91s merge_test.py::TestMerge::test_is_at_ref_end PASSED                      [ 72%]
 91s merge_test.py::TestMerge::test_is_at_ref_start PASSED                    [ 73%]
 91s merge_test.py::TestMerge::test_load_nucmer_hits PASSED                   [ 74%]
 91s merge_test.py::TestMerge::test_make_circularised_contig_1 PASSED         [ 75%]
 91s merge_test.py::TestMerge::test_make_circularised_contig_2 PASSED         [ 76%]
 91s merge_test.py::TestMerge::test_make_new_contig_from_nucmer_and_spades_not_hit PASSED [ 76%]
 91s merge_test.py::TestMerge::test_make_new_contig_from_nucmer_and_spades_with_hit PASSED [ 77%]
 91s merge_test.py::TestMerge::test_merge_bridged_contig_pair1 PASSED         [ 78%]
 91s merge_test.py::TestMerge::test_merge_bridged_contig_pair2 PASSED         [ 79%]
 91s merge_test.py::TestMerge::test_merge_bridged_contig_pair3 PASSED         [ 80%]
 91s merge_test.py::TestMerge::test_merge_bridged_contig_pair4 PASSED         [ 81%]
 91s merge_test.py::TestMerge::test_min_qry_hit_length PASSED                 [ 82%]
 91s merge_test.py::TestMerge::test_orientation_ok_to_bridge_contigs PASSED   [ 83%]
 91s merge_test.py::TestMerge::test_remove_keys_from_dict_with_nonunique_values PASSED [ 84%]
 91s merge_test.py::TestMerge::test_write_act_files PASSED                    [ 84%]
 91s minimus2_test.py::TestMinimus2::test_run_initial_merge SKIPPED (Amos...) [ 85%]
 91s minimus2_test.py::TestMinimus2::test_run_minimus2 SKIPPED (Amos is n...) [ 86%]
 91s minimus2_test.py::TestMinimus2::test_run_minimus2_on_each_contig SKIPPED [ 87%]
 91s minimus2_test.py::TestMinimus2::test_run_minimus2_on_one_contig_will_not_work SKIPPED [ 88%]
 91s minimus2_test.py::TestMinimus2::test_run_minimus2_on_one_contig_will_work SKIPPED [ 89%]
 91s minimus2_test.py::TestMinimus2::test_write_split_contig SKIPPED (Amo...) [ 90%]
 91s start_fixer_test.py::TestStartFixer::test_find_circular_using_prodigal PASSED [ 91%]
 91s start_fixer_test.py::TestStartFixer::test_find_circular_using_promer PASSED [ 92%]
 91s start_fixer_test.py::TestStartFixer::test_init PASSED                    [ 92%]
 91s start_fixer_test.py::TestStartFixer::test_max_length_from_fasta_file PASSED [ 93%]
 91s start_fixer_test.py::TestStartFixer::test_rearrange_contigs PASSED       [ 94%]
 91s start_fixer_test.py::TestStartFixer::test_rename_contigs PASSED          [ 95%]
 91s start_fixer_test.py::TestStartFixer::test_run_bit_of_everything PASSED   [ 96%]
 91s start_fixer_test.py::TestStartFixer::test_run_ignore_all PASSED          [ 97%]
 91s start_fixer_test.py::TestStartFixer::test_run_none_for_prodigal PASSED   [ 98%]
 91s start_fixer_test.py::TestStartFixer::test_write_fasta_plus_circularized_ends PASSED [ 99%]
 91s start_fixer_test.py::TestStartFixer::test_write_renamed_contigs PASSED   [100%]
 91s 
 91s =============================== warnings summary ===============================
 91s ../../../usr/lib/python3/dist-packages/pyfastaq/__init__.py:3
 91s   /usr/lib/python3/dist-packages/pyfastaq/__init__.py:3: DeprecationWarning: Unimplemented abstract methods {'locate_file', 'read_text'}
 91s     __version__ = Distribution().from_name('pyfastaq').version
 91s 
 91s ../../../usr/lib/python3/dist-packages/circlator/__init__.py:1
 91s   /usr/lib/python3/dist-packages/circlator/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
 91s     from pkg_resources import get_distribution
 91s 
 91s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
 91s =========== 107 passed, 6 skipped, 2 deselected, 2 warnings in 1.24s ===========
 92s autopkgtest [02:31:26]: test run-unit-test: -----------------------]
 92s run-unit-test        PASS
 92s autopkgtest [02:31:26]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
 92s autopkgtest [02:31:26]: @@@@@@@@@@@@@@@@@@@@ summary
 92s run-unit-test        PASS
108s nova [W] Skipping flock for amd64
108s Creating nova instance adt-plucky-i386-circlator-20250217-022953-juju-7f2275-prod-proposed-migration-environment-2-d8f819c7-0764-4dc5-a991-dc48dfe2c9e9 from image adt/ubuntu-plucky-amd64-server-20250216.img (UUID 26c2d61c-0a3b-4531-99d0-9e45496fa927)...
108s nova [W] Timed out waiting for 93318e8c-2410-41c7-b144-c41dbf854038 to get deleted.