0s autopkgtest [09:05:10]: starting date and time: 2025-01-18 09:05:10+0000 0s autopkgtest [09:05:10]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [09:05:10]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.h8apd9c7/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:numcodecs --apt-upgrade zarr --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=numcodecs/0.15.0+ds-1 -- lxd -r lxd-armhf-10.145.243.16 lxd-armhf-10.145.243.16:autopkgtest/ubuntu/plucky/armhf 51s autopkgtest [09:06:01]: testbed dpkg architecture: armhf 54s autopkgtest [09:06:04]: testbed apt version: 2.9.14ubuntu1 58s autopkgtest [09:06:08]: @@@@@@@@@@@@@@@@@@@@ test bed setup 60s autopkgtest [09:06:10]: testbed release detected to be: None 69s autopkgtest [09:06:19]: updating testbed package index (apt update) 71s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 71s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [213 kB] 71s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 71s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 72s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.6 kB] 72s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 72s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [156 kB] 72s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [823 kB] 72s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [251 kB] 72s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf Packages [756 B] 72s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [875 kB] 72s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3692 B] 72s Get:13 http://ftpmaster.internal/ubuntu plucky/universe Sources [20.9 MB] 72s Get:14 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [296 kB] 72s Get:15 http://ftpmaster.internal/ubuntu plucky/restricted Sources [15.2 kB] 72s Get:16 http://ftpmaster.internal/ubuntu plucky/main Sources [1392 kB] 72s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1359 kB] 72s Get:18 http://ftpmaster.internal/ubuntu plucky/restricted armhf Packages [2544 B] 72s Get:19 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [14.6 MB] 73s Get:20 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [173 kB] 76s Fetched 41.2 MB in 5s (7963 kB/s) 77s Reading package lists... 84s autopkgtest [09:06:34]: upgrading testbed (apt dist-upgrade and autopurge) 86s Reading package lists... 86s Building dependency tree... 86s Reading state information... 87s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 87s Starting 2 pkgProblemResolver with broken count: 0 87s Done 88s Entering ResolveByKeep 88s 89s The following packages were automatically installed and are no longer required: 89s libassuan0 libicu74 89s Use 'apt autoremove' to remove them. 89s The following NEW packages will be installed: 89s libicu76 openssl-provider-legacy python3-bcrypt 89s The following packages will be upgraded: 89s apport apport-core-dump-handler appstream apt apt-utils base-passwd bash 89s bash-completion binutils binutils-arm-linux-gnueabihf binutils-common 89s bsdextrautils bsdutils cloud-init cloud-init-base console-setup 89s console-setup-linux curl dirmngr dpkg dpkg-dev dracut-install eject ethtool 89s fdisk fwupd gcc-14-base gettext-base gir1.2-girepository-2.0 gir1.2-glib-2.0 89s gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm gpgv 89s groff-base iputils-ping iputils-tracepath keyboard-configuration keyboxd 89s libappstream5 libapt-pkg6.0t64 libatomic1 libbinutils libblkid1 libbpf1 89s libc-bin libc6 libcap-ng0 libctf-nobfd0 libctf0 libcurl3t64-gnutls 89s libcurl4t64 libdebconfclient0 libdpkg-perl libfdisk1 libfribidi0 libftdi1-2 89s libfwupd3 libgcc-s1 libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-bin 89s libglib2.0-data libgpg-error-l10n libgpg-error0 libgpgme11t64 89s libgstreamer1.0-0 libgudev-1.0-0 libjson-glib-1.0-0 libjson-glib-1.0-common 89s libmount1 libnewt0.52 libnpth0t64 libnss-systemd libnss3 libpam-systemd 89s libpng16-16t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib 89s libqmi-glib5 libqmi-proxy libreadline8t64 libsframe1 libsmartcols1 89s libssl3t64 libstdc++6 libsystemd-shared libsystemd0 libtraceevent1 89s libtraceevent1-plugin libudev1 libunistring5 libuuid1 libwrap0 libxkbcommon0 89s libxml2 libyaml-0-2 locales make mount nano openssl pci.ids publicsuffix 89s python-apt-common python3 python3-apport python3-apt python3-attr 89s python3-certifi python3-chardet python3-cryptography python3-gdbm 89s python3-jinja2 python3-json-pointer python3-jsonpatch python3-jwt 89s python3-minimal python3-newt python3-oauthlib python3-openssl 89s python3-pkg-resources python3-problem-report python3-rich python3-setuptools 89s python3-software-properties python3-wadllib python3.12 python3.12-gdbm 89s python3.12-minimal python3.13-gdbm readline-common rsync 89s software-properties-common systemd systemd-cryptsetup systemd-resolved 89s systemd-sysv systemd-timesyncd tar tzdata ucf udev usb.ids util-linux 89s uuid-runtime whiptail xauth xfsprogs 89s 155 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 89s Need to get 76.1 MB of archives. 89s After this operation, 46.2 MB of additional disk space will be used. 89s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf bash armhf 5.2.37-1ubuntu1 [677 kB] 90s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf bsdutils armhf 1:2.40.2-1ubuntu2 [108 kB] 90s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-13ubuntu1 [7890 B] 90s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-13ubuntu1 [53.0 kB] 90s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-13ubuntu1 [40.6 kB] 90s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-13ubuntu1 [711 kB] 90s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libc6 armhf 2.40-4ubuntu1 [2866 kB] 90s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf openssl-provider-legacy armhf 3.4.0-1ubuntu2 [29.4 kB] 90s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libssl3t64 armhf 3.4.0-1ubuntu2 [1756 kB] 90s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-timesyncd armhf 257-2ubuntu1 [41.2 kB] 90s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-resolved armhf 257-2ubuntu1 [307 kB] 90s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-cryptsetup armhf 257-2ubuntu1 [122 kB] 90s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf bsdextrautils armhf 2.40.2-1ubuntu2 [99.4 kB] 90s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf eject armhf 2.40.2-1ubuntu2 [62.3 kB] 90s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf fdisk armhf 2.40.2-1ubuntu2 [155 kB] 90s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libblkid1 armhf 2.40.2-1ubuntu2 [167 kB] 90s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libmount1 armhf 2.40.2-1ubuntu2 [189 kB] 90s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libsmartcols1 armhf 2.40.2-1ubuntu2 [135 kB] 90s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libuuid1 armhf 2.40.2-1ubuntu2 [39.5 kB] 90s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf util-linux armhf 2.40.2-1ubuntu2 [1195 kB] 90s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf uuid-runtime armhf 2.40.2-1ubuntu2 [62.7 kB] 90s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libfdisk1 armhf 2.40.2-1ubuntu2 [211 kB] 90s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf mount armhf 2.40.2-1ubuntu2 [156 kB] 90s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf readline-common all 8.2-6 [56.5 kB] 90s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libreadline8t64 armhf 8.2-6 [131 kB] 90s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libnss-systemd armhf 257-2ubuntu1 [160 kB] 90s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf systemd armhf 257-2ubuntu1 [3489 kB] 90s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf udev armhf 257-2ubuntu1 [1974 kB] 90s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-sysv armhf 257-2ubuntu1 [11.8 kB] 90s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libpam-systemd armhf 257-2ubuntu1 [233 kB] 90s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd-shared armhf 257-2ubuntu1 [2156 kB] 90s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libudev1 armhf 257-2ubuntu1 [190 kB] 90s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd0 armhf 257-2ubuntu1 [483 kB] 90s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libapt-pkg6.0t64 armhf 2.9.18 [1085 kB] 90s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf tar armhf 1.35+dfsg-3.1 [240 kB] 90s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg armhf 1.22.11ubuntu4 [1242 kB] 90s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libdebconfclient0 armhf 0.274ubuntu1 [11.2 kB] 90s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf base-passwd armhf 3.6.6 [53.4 kB] 90s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libc-bin armhf 2.40-4ubuntu1 [542 kB] 90s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf apt armhf 2.9.18 [1349 kB] 90s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf apt-utils armhf 2.9.18 [216 kB] 90s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libgpg-error-l10n all 1.51-3 [8800 B] 90s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libgpg-error0 armhf 1.51-3 [64.8 kB] 90s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libnpth0t64 armhf 1.8-2 [7572 B] 90s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf gpg-wks-client armhf 2.4.4-2ubuntu21 [88.9 kB] 90s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf dirmngr armhf 2.4.4-2ubuntu21 [351 kB] 90s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf gpgsm armhf 2.4.4-2ubuntu21 [246 kB] 90s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf gnupg-utils armhf 2.4.4-2ubuntu21 [160 kB] 90s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf gpg-agent armhf 2.4.4-2ubuntu21 [238 kB] 90s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf gpg armhf 2.4.4-2ubuntu21 [536 kB] 90s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf gpgconf armhf 2.4.4-2ubuntu21 [118 kB] 90s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf gnupg all 2.4.4-2ubuntu21 [359 kB] 90s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf keyboxd armhf 2.4.4-2ubuntu21 [113 kB] 90s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf gpgv armhf 2.4.4-2ubuntu21 [228 kB] 90s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf console-setup-linux all 1.226ubuntu3 [1880 kB] 90s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf console-setup all 1.226ubuntu3 [110 kB] 90s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf keyboard-configuration all 1.226ubuntu3 [212 kB] 90s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf python3-minimal armhf 3.12.8-1 [27.5 kB] 90s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf python3 armhf 3.12.8-1 [23.9 kB] 91s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf tzdata all 2024b-4ubuntu1 [196 kB] 91s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12 armhf 3.12.8-3 [667 kB] 91s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-stdlib armhf 3.12.8-3 [1939 kB] 91s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-minimal armhf 3.12.8-3 [2029 kB] 91s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-minimal armhf 3.12.8-3 [825 kB] 91s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3-stdlib armhf 3.12.8-1 [10.1 kB] 91s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf rsync armhf 3.3.0+ds1-2 [422 kB] 91s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf python-apt-common all 2.9.6build1 [21.0 kB] 91s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf python3-apt armhf 2.9.6build1 [174 kB] 91s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf python3-problem-report all 2.31.0-0ubuntu3 [25.3 kB] 91s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf python3-apport all 2.31.0-0ubuntu3 [93.1 kB] 91s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf libglib2.0-data all 2.82.4-1 [52.2 kB] 91s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf libglib2.0-bin armhf 2.82.4-1 [93.0 kB] 91s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf gir1.2-girepository-2.0 armhf 1.82.0-3 [25.3 kB] 91s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf gir1.2-glib-2.0 armhf 2.82.4-1 [182 kB] 91s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libglib2.0-0t64 armhf 2.82.4-1 [1421 kB] 91s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libgirepository-1.0-1 armhf 1.82.0-3 [108 kB] 91s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf apport-core-dump-handler all 2.31.0-0ubuntu3 [18.3 kB] 91s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf apport all 2.31.0-0ubuntu3 [83.0 kB] 91s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libcap-ng0 armhf 0.8.5-4 [13.8 kB] 91s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf libunistring5 armhf 1.3-1 [583 kB] 91s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf iputils-ping armhf 3:20240905-1ubuntu1 [45.0 kB] 91s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf libbpf1 armhf 1:1.5.0-2 [158 kB] 91s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf libfribidi0 armhf 1.0.16-1 [24.3 kB] 91s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf python3-newt armhf 0.52.24-4ubuntu1 [20.1 kB] 91s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf libnewt0.52 armhf 0.52.24-4ubuntu1 [39.7 kB] 91s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2ubuntu2 [598 kB] 91s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf libyaml-0-2 armhf 0.2.5-2 [45.3 kB] 91s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf locales all 2.40-4ubuntu1 [4224 kB] 91s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf openssl armhf 3.4.0-1ubuntu2 [1159 kB] 91s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf python3-rich all 13.9.4-1 [190 kB] 91s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf ucf all 3.0046 [41.9 kB] 91s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf whiptail armhf 0.52.24-4ubuntu1 [17.3 kB] 91s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf bash-completion all 1:2.16.0-6 [214 kB] 91s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf ethtool armhf 1:6.11-1 [222 kB] 91s Get:95 http://ftpmaster.internal/ubuntu plucky/main armhf gettext-base armhf 0.22.5-3 [40.7 kB] 91s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf groff-base armhf 1.23.0-7 [949 kB] 91s Get:97 http://ftpmaster.internal/ubuntu plucky/main armhf iputils-tracepath armhf 3:20240905-1ubuntu1 [13.3 kB] 91s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf libpng16-16t64 armhf 1.6.44-3 [169 kB] 91s Get:99 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1-plugin armhf 1:1.8.4-2 [19.0 kB] 91s Get:100 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1 armhf 1:1.8.4-2 [53.8 kB] 91s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf libxkbcommon0 armhf 1.7.0-2 [113 kB] 91s Get:102 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.3-1 [277 kB] 92s Get:103 http://ftpmaster.internal/ubuntu plucky/main armhf pci.ids all 0.0~2024.11.25-1 [282 kB] 92s Get:104 http://ftpmaster.internal/ubuntu plucky/main armhf publicsuffix all 20241206.1516-0.1 [135 kB] 92s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.1-2 [29.8 kB] 92s Get:106 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-gdbm armhf 3.12.8-3 [28.9 kB] 92s Get:107 http://ftpmaster.internal/ubuntu plucky/main armhf python3-gdbm armhf 3.13.1-1 [8668 B] 92s Get:108 http://ftpmaster.internal/ubuntu plucky/main armhf usb.ids all 2025.01.14-1 [223 kB] 92s Get:109 http://ftpmaster.internal/ubuntu plucky/main armhf xauth armhf 1:1.1.2-1.1 [23.0 kB] 92s Get:110 http://ftpmaster.internal/ubuntu plucky/main armhf libcurl3t64-gnutls armhf 8.11.1-1ubuntu1 [333 kB] 92s Get:111 http://ftpmaster.internal/ubuntu plucky/main armhf libappstream5 armhf 1.0.4-1 [211 kB] 92s Get:112 http://ftpmaster.internal/ubuntu plucky/main armhf appstream armhf 1.0.4-1 [67.3 kB] 92s Get:113 http://ftpmaster.internal/ubuntu plucky/main armhf libctf0 armhf 2.43.50.20241230-1ubuntu1 [74.5 kB] 92s Get:114 http://ftpmaster.internal/ubuntu plucky/main armhf libctf-nobfd0 armhf 2.43.50.20241230-1ubuntu1 [77.3 kB] 93s Get:115 http://ftpmaster.internal/ubuntu plucky/main armhf binutils-arm-linux-gnueabihf armhf 2.43.50.20241230-1ubuntu1 [2960 kB] 93s Get:116 http://ftpmaster.internal/ubuntu plucky/main armhf libbinutils armhf 2.43.50.20241230-1ubuntu1 [403 kB] 93s Get:117 http://ftpmaster.internal/ubuntu plucky/main armhf binutils armhf 2.43.50.20241230-1ubuntu1 [3086 B] 93s Get:118 http://ftpmaster.internal/ubuntu plucky/main armhf binutils-common armhf 2.43.50.20241230-1ubuntu1 [222 kB] 94s Get:119 http://ftpmaster.internal/ubuntu plucky/main armhf libsframe1 armhf 2.43.50.20241230-1ubuntu1 [12.1 kB] 94s Get:120 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.3-1.1 [108 kB] 94s Get:121 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-3 [8444 B] 94s Get:122 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jsonpatch all 1.32-5 [12.3 kB] 94s Get:123 http://ftpmaster.internal/ubuntu plucky/main armhf python3-bcrypt armhf 4.2.0-2.1 [239 kB] 94s Get:124 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cryptography armhf 43.0.0-1 [925 kB] 94s Get:125 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jwt all 2.10.1-2 [21.0 kB] 94s Get:126 http://ftpmaster.internal/ubuntu plucky/main armhf python3-oauthlib all 3.2.2-3 [89.9 kB] 94s Get:127 http://ftpmaster.internal/ubuntu plucky/main armhf cloud-init-base all 25.1~2g4ee65391-0ubuntu1 [614 kB] 94s Get:128 http://ftpmaster.internal/ubuntu plucky/main armhf curl armhf 8.11.1-1ubuntu1 [244 kB] 94s Get:129 http://ftpmaster.internal/ubuntu plucky/main armhf libcurl4t64 armhf 8.11.1-1ubuntu1 [337 kB] 94s Get:130 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg-dev all 1.22.11ubuntu4 [1088 kB] 94s Get:131 http://ftpmaster.internal/ubuntu plucky/main armhf libdpkg-perl all 1.22.11ubuntu4 [279 kB] 94s Get:132 http://ftpmaster.internal/ubuntu plucky/main armhf make armhf 4.4.1-1 [180 kB] 94s Get:133 http://ftpmaster.internal/ubuntu plucky/main armhf dracut-install armhf 105-2ubuntu5 [37.3 kB] 94s Get:134 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.6+ds-1 [5636 B] 94s Get:135 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.6+ds-1 [59.5 kB] 94s Get:136 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 2.0.3-3 [5028 kB] 95s Get:137 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd3 armhf 2.0.3-3 [121 kB] 95s Get:138 http://ftpmaster.internal/ubuntu plucky/main armhf libqmi-proxy armhf 1.35.6-1 [5878 B] 95s Get:139 http://ftpmaster.internal/ubuntu plucky/main armhf libqmi-glib5 armhf 1.35.6-1 [928 kB] 95s Get:140 http://ftpmaster.internal/ubuntu plucky/main armhf gnupg-l10n all 2.4.4-2ubuntu21 [66.3 kB] 95s Get:141 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-8 [26.3 kB] 95s Get:142 http://ftpmaster.internal/ubuntu plucky/main armhf libgpgme11t64 armhf 1.24.1-2ubuntu1 [126 kB] 95s Get:143 http://ftpmaster.internal/ubuntu plucky/main armhf libgstreamer1.0-0 armhf 1.24.10-2 [1109 kB] 95s Get:144 http://ftpmaster.internal/ubuntu plucky/main armhf libgudev-1.0-0 armhf 1:238-6 [13.7 kB] 95s Get:145 http://ftpmaster.internal/ubuntu plucky/main armhf libicu76 armhf 76.1-1ubuntu2 [10.8 MB] 96s Get:146 http://ftpmaster.internal/ubuntu plucky/main armhf libnss3 armhf 2:3.106-1ubuntu1 [1321 kB] 96s Get:147 http://ftpmaster.internal/ubuntu plucky/main armhf libwrap0 armhf 7.6.q-34 [45.7 kB] 96s Get:148 http://ftpmaster.internal/ubuntu plucky/main armhf python3-attr all 24.2.0-1 [50.2 kB] 96s Get:149 http://ftpmaster.internal/ubuntu plucky/main armhf python3-certifi all 2024.12.14+ds-1 [9800 B] 96s Get:150 http://ftpmaster.internal/ubuntu plucky/main armhf python3-chardet all 5.2.0+dfsg-2 [116 kB] 96s Get:151 http://ftpmaster.internal/ubuntu plucky/main armhf python3-openssl all 24.3.0-1 [45.8 kB] 96s Get:152 http://ftpmaster.internal/ubuntu plucky/main armhf python3-pkg-resources all 75.6.0-1 [144 kB] 96s Get:153 http://ftpmaster.internal/ubuntu plucky/main armhf python3-setuptools all 75.6.0-1 [645 kB] 96s Get:154 http://ftpmaster.internal/ubuntu plucky/main armhf software-properties-common all 0.108 [16.5 kB] 96s Get:155 http://ftpmaster.internal/ubuntu plucky/main armhf python3-software-properties all 0.108 [30.9 kB] 96s Get:156 http://ftpmaster.internal/ubuntu plucky/main armhf python3-wadllib all 2.0.0-2 [36.2 kB] 96s Get:157 http://ftpmaster.internal/ubuntu plucky/main armhf xfsprogs armhf 6.8.0-2.2ubuntu3 [893 kB] 96s Get:158 http://ftpmaster.internal/ubuntu plucky/main armhf cloud-init all 25.1~2g4ee65391-0ubuntu1 [2104 B] 96s Preconfiguring packages ... 97s Fetched 76.1 MB in 7s (11.3 MB/s) 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 97s Preparing to unpack .../bash_5.2.37-1ubuntu1_armhf.deb ... 97s Unpacking bash (5.2.37-1ubuntu1) over (5.2.32-1ubuntu2) ... 97s Setting up bash (5.2.37-1ubuntu1) ... 97s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 97s Preparing to unpack .../bsdutils_1%3a2.40.2-1ubuntu2_armhf.deb ... 97s Unpacking bsdutils (1:2.40.2-1ubuntu2) over (1:2.40.2-1ubuntu1) ... 97s Setting up bsdutils (1:2.40.2-1ubuntu2) ... 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 97s Preparing to unpack .../libatomic1_14.2.0-13ubuntu1_armhf.deb ... 97s Unpacking libatomic1:armhf (14.2.0-13ubuntu1) over (14.2.0-8ubuntu1) ... 97s Preparing to unpack .../gcc-14-base_14.2.0-13ubuntu1_armhf.deb ... 97s Unpacking gcc-14-base:armhf (14.2.0-13ubuntu1) over (14.2.0-8ubuntu1) ... 97s Setting up gcc-14-base:armhf (14.2.0-13ubuntu1) ... 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 97s Preparing to unpack .../libgcc-s1_14.2.0-13ubuntu1_armhf.deb ... 97s Unpacking libgcc-s1:armhf (14.2.0-13ubuntu1) over (14.2.0-8ubuntu1) ... 97s Setting up libgcc-s1:armhf (14.2.0-13ubuntu1) ... 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 97s Preparing to unpack .../libstdc++6_14.2.0-13ubuntu1_armhf.deb ... 97s Unpacking libstdc++6:armhf (14.2.0-13ubuntu1) over (14.2.0-8ubuntu1) ... 97s Setting up libstdc++6:armhf (14.2.0-13ubuntu1) ... 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 98s Preparing to unpack .../libc6_2.40-4ubuntu1_armhf.deb ... 98s Unpacking libc6:armhf (2.40-4ubuntu1) over (2.40-1ubuntu3) ... 98s Setting up libc6:armhf (2.40-4ubuntu1) ... 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 98s Preparing to unpack .../libssl3t64_3.4.0-1ubuntu2_armhf.deb ... 98s Unpacking libssl3t64:armhf (3.4.0-1ubuntu2) over (3.3.1-2ubuntu2) ... 98s Selecting previously unselected package openssl-provider-legacy. 98s Preparing to unpack .../openssl-provider-legacy_3.4.0-1ubuntu2_armhf.deb ... 98s Unpacking openssl-provider-legacy (3.4.0-1ubuntu2) ... 98s Setting up libssl3t64:armhf (3.4.0-1ubuntu2) ... 98s Setting up openssl-provider-legacy (3.4.0-1ubuntu2) ... 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59973 files and directories currently installed.) 98s Preparing to unpack .../0-systemd-timesyncd_257-2ubuntu1_armhf.deb ... 98s Unpacking systemd-timesyncd (257-2ubuntu1) over (256.5-2ubuntu4) ... 98s Preparing to unpack .../1-systemd-resolved_257-2ubuntu1_armhf.deb ... 98s Unpacking systemd-resolved (257-2ubuntu1) over (256.5-2ubuntu4) ... 98s Preparing to unpack .../2-systemd-cryptsetup_257-2ubuntu1_armhf.deb ... 98s Unpacking systemd-cryptsetup (257-2ubuntu1) over (256.5-2ubuntu4) ... 98s Preparing to unpack .../3-bsdextrautils_2.40.2-1ubuntu2_armhf.deb ... 98s Unpacking bsdextrautils (2.40.2-1ubuntu2) over (2.40.2-1ubuntu1) ... 98s Preparing to unpack .../4-eject_2.40.2-1ubuntu2_armhf.deb ... 98s Unpacking eject (2.40.2-1ubuntu2) over (2.40.2-1ubuntu1) ... 98s Preparing to unpack .../5-fdisk_2.40.2-1ubuntu2_armhf.deb ... 98s Unpacking fdisk (2.40.2-1ubuntu2) over (2.40.2-1ubuntu1) ... 98s Preparing to unpack .../6-libblkid1_2.40.2-1ubuntu2_armhf.deb ... 98s Unpacking libblkid1:armhf (2.40.2-1ubuntu2) over (2.40.2-1ubuntu1) ... 98s Setting up libblkid1:armhf (2.40.2-1ubuntu2) ... 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59974 files and directories currently installed.) 98s Preparing to unpack .../libmount1_2.40.2-1ubuntu2_armhf.deb ... 98s Unpacking libmount1:armhf (2.40.2-1ubuntu2) over (2.40.2-1ubuntu1) ... 98s Setting up libmount1:armhf (2.40.2-1ubuntu2) ... 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59974 files and directories currently installed.) 99s Preparing to unpack .../libsmartcols1_2.40.2-1ubuntu2_armhf.deb ... 99s Unpacking libsmartcols1:armhf (2.40.2-1ubuntu2) over (2.40.2-1ubuntu1) ... 99s Setting up libsmartcols1:armhf (2.40.2-1ubuntu2) ... 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59974 files and directories currently installed.) 99s Preparing to unpack .../libuuid1_2.40.2-1ubuntu2_armhf.deb ... 99s Unpacking libuuid1:armhf (2.40.2-1ubuntu2) over (2.40.2-1ubuntu1) ... 99s Setting up libuuid1:armhf (2.40.2-1ubuntu2) ... 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59974 files and directories currently installed.) 99s Preparing to unpack .../util-linux_2.40.2-1ubuntu2_armhf.deb ... 99s Unpacking util-linux (2.40.2-1ubuntu2) over (2.40.2-1ubuntu1) ... 99s Setting up util-linux (2.40.2-1ubuntu2) ... 100s fstrim.service is a disabled or a static unit not running, not starting it. 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59974 files and directories currently installed.) 100s Preparing to unpack .../0-uuid-runtime_2.40.2-1ubuntu2_armhf.deb ... 100s Unpacking uuid-runtime (2.40.2-1ubuntu2) over (2.40.2-1ubuntu1) ... 100s Preparing to unpack .../1-libfdisk1_2.40.2-1ubuntu2_armhf.deb ... 100s Unpacking libfdisk1:armhf (2.40.2-1ubuntu2) over (2.40.2-1ubuntu1) ... 100s Preparing to unpack .../2-mount_2.40.2-1ubuntu2_armhf.deb ... 100s Unpacking mount (2.40.2-1ubuntu2) over (2.40.2-1ubuntu1) ... 100s Preparing to unpack .../3-readline-common_8.2-6_all.deb ... 100s Unpacking readline-common (8.2-6) over (8.2-5) ... 100s Preparing to unpack .../4-libreadline8t64_8.2-6_armhf.deb ... 100s Leaving 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' 100s Leaving 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' 100s Leaving 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' 100s Leaving 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' 100s Unpacking libreadline8t64:armhf (8.2-6) over (8.2-5) ... 100s Preparing to unpack .../5-libnss-systemd_257-2ubuntu1_armhf.deb ... 100s Unpacking libnss-systemd:armhf (257-2ubuntu1) over (256.5-2ubuntu4) ... 100s Preparing to unpack .../6-systemd_257-2ubuntu1_armhf.deb ... 100s Unpacking systemd (257-2ubuntu1) over (256.5-2ubuntu4) ... 100s Preparing to unpack .../7-udev_257-2ubuntu1_armhf.deb ... 100s Unpacking udev (257-2ubuntu1) over (256.5-2ubuntu4) ... 100s Preparing to unpack .../8-libsystemd-shared_257-2ubuntu1_armhf.deb ... 100s Unpacking libsystemd-shared:armhf (257-2ubuntu1) over (256.5-2ubuntu4) ... 100s Setting up libsystemd-shared:armhf (257-2ubuntu1) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59967 files and directories currently installed.) 100s Preparing to unpack .../libsystemd0_257-2ubuntu1_armhf.deb ... 100s Unpacking libsystemd0:armhf (257-2ubuntu1) over (256.5-2ubuntu4) ... 100s Setting up libsystemd0:armhf (257-2ubuntu1) ... 100s Setting up mount (2.40.2-1ubuntu2) ... 100s Setting up systemd (257-2ubuntu1) ... 100s Installing new version of config file /etc/systemd/logind.conf ... 100s Installing new version of config file /etc/systemd/sleep.conf ... 100s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 100s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 101s /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59967 files and directories currently installed.) 101s Preparing to unpack .../systemd-sysv_257-2ubuntu1_armhf.deb ... 101s Unpacking systemd-sysv (257-2ubuntu1) over (256.5-2ubuntu4) ... 101s Preparing to unpack .../libpam-systemd_257-2ubuntu1_armhf.deb ... 101s Unpacking libpam-systemd:armhf (257-2ubuntu1) over (256.5-2ubuntu4) ... 101s Preparing to unpack .../libudev1_257-2ubuntu1_armhf.deb ... 101s Unpacking libudev1:armhf (257-2ubuntu1) over (256.5-2ubuntu4) ... 101s Setting up libudev1:armhf (257-2ubuntu1) ... 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59967 files and directories currently installed.) 101s Preparing to unpack .../libapt-pkg6.0t64_2.9.18_armhf.deb ... 101s Unpacking libapt-pkg6.0t64:armhf (2.9.18) over (2.9.14ubuntu1) ... 102s Setting up libapt-pkg6.0t64:armhf (2.9.18) ... 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59967 files and directories currently installed.) 102s Preparing to unpack .../tar_1.35+dfsg-3.1_armhf.deb ... 102s Unpacking tar (1.35+dfsg-3.1) over (1.35+dfsg-3build1) ... 102s Setting up tar (1.35+dfsg-3.1) ... 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59967 files and directories currently installed.) 102s Preparing to unpack .../dpkg_1.22.11ubuntu4_armhf.deb ... 102s Unpacking dpkg (1.22.11ubuntu4) over (1.22.11ubuntu3) ... 102s Setting up dpkg (1.22.11ubuntu4) ... 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59967 files and directories currently installed.) 102s Preparing to unpack .../libdebconfclient0_0.274ubuntu1_armhf.deb ... 102s Unpacking libdebconfclient0:armhf (0.274ubuntu1) over (0.272ubuntu1) ... 102s Setting up libdebconfclient0:armhf (0.274ubuntu1) ... 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59967 files and directories currently installed.) 102s Preparing to unpack .../base-passwd_3.6.6_armhf.deb ... 102s Unpacking base-passwd (3.6.6) over (3.6.5) ... 102s Setting up base-passwd (3.6.6) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59967 files and directories currently installed.) 103s Preparing to unpack .../libc-bin_2.40-4ubuntu1_armhf.deb ... 103s Unpacking libc-bin (2.40-4ubuntu1) over (2.40-1ubuntu3) ... 103s Setting up libc-bin (2.40-4ubuntu1) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59967 files and directories currently installed.) 103s Preparing to unpack .../archives/apt_2.9.18_armhf.deb ... 103s Unpacking apt (2.9.18) over (2.9.14ubuntu1) ... 103s Setting up apt (2.9.18) ... 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59966 files and directories currently installed.) 104s Preparing to unpack .../apt-utils_2.9.18_armhf.deb ... 104s Unpacking apt-utils (2.9.18) over (2.9.14ubuntu1) ... 104s Preparing to unpack .../libgpg-error-l10n_1.51-3_all.deb ... 104s Unpacking libgpg-error-l10n (1.51-3) over (1.50-4) ... 104s Preparing to unpack .../libgpg-error0_1.51-3_armhf.deb ... 104s Unpacking libgpg-error0:armhf (1.51-3) over (1.50-4) ... 104s Setting up libgpg-error0:armhf (1.51-3) ... 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59966 files and directories currently installed.) 104s Preparing to unpack .../libnpth0t64_1.8-2_armhf.deb ... 104s Unpacking libnpth0t64:armhf (1.8-2) over (1.6-3.1build1) ... 104s Setting up libnpth0t64:armhf (1.8-2) ... 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59966 files and directories currently installed.) 104s Preparing to unpack .../0-gpg-wks-client_2.4.4-2ubuntu21_armhf.deb ... 104s Unpacking gpg-wks-client (2.4.4-2ubuntu21) over (2.4.4-2ubuntu18) ... 104s Preparing to unpack .../1-dirmngr_2.4.4-2ubuntu21_armhf.deb ... 104s Unpacking dirmngr (2.4.4-2ubuntu21) over (2.4.4-2ubuntu18) ... 104s Preparing to unpack .../2-gpgsm_2.4.4-2ubuntu21_armhf.deb ... 104s Unpacking gpgsm (2.4.4-2ubuntu21) over (2.4.4-2ubuntu18) ... 104s Preparing to unpack .../3-gnupg-utils_2.4.4-2ubuntu21_armhf.deb ... 104s Unpacking gnupg-utils (2.4.4-2ubuntu21) over (2.4.4-2ubuntu18) ... 104s Preparing to unpack .../4-gpg-agent_2.4.4-2ubuntu21_armhf.deb ... 104s Unpacking gpg-agent (2.4.4-2ubuntu21) over (2.4.4-2ubuntu18) ... 104s Preparing to unpack .../5-gpg_2.4.4-2ubuntu21_armhf.deb ... 104s Unpacking gpg (2.4.4-2ubuntu21) over (2.4.4-2ubuntu18) ... 104s Preparing to unpack .../6-gpgconf_2.4.4-2ubuntu21_armhf.deb ... 104s Unpacking gpgconf (2.4.4-2ubuntu21) over (2.4.4-2ubuntu18) ... 104s Preparing to unpack .../7-gnupg_2.4.4-2ubuntu21_all.deb ... 104s Unpacking gnupg (2.4.4-2ubuntu21) over (2.4.4-2ubuntu18) ... 104s Preparing to unpack .../8-keyboxd_2.4.4-2ubuntu21_armhf.deb ... 104s Unpacking keyboxd (2.4.4-2ubuntu21) over (2.4.4-2ubuntu18) ... 104s Preparing to unpack .../9-gpgv_2.4.4-2ubuntu21_armhf.deb ... 104s Unpacking gpgv (2.4.4-2ubuntu21) over (2.4.4-2ubuntu18) ... 104s Setting up gpgv (2.4.4-2ubuntu21) ... 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59966 files and directories currently installed.) 105s Preparing to unpack .../console-setup-linux_1.226ubuntu3_all.deb ... 105s Unpacking console-setup-linux (1.226ubuntu3) over (1.226ubuntu2) ... 105s Preparing to unpack .../console-setup_1.226ubuntu3_all.deb ... 105s Unpacking console-setup (1.226ubuntu3) over (1.226ubuntu2) ... 105s Preparing to unpack .../keyboard-configuration_1.226ubuntu3_all.deb ... 105s Unpacking keyboard-configuration (1.226ubuntu3) over (1.226ubuntu2) ... 105s Preparing to unpack .../python3-minimal_3.12.8-1_armhf.deb ... 105s Unpacking python3-minimal (3.12.8-1) over (3.12.6-0ubuntu1) ... 105s Setting up python3-minimal (3.12.8-1) ... 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59966 files and directories currently installed.) 105s Preparing to unpack .../00-python3_3.12.8-1_armhf.deb ... 105s Unpacking python3 (3.12.8-1) over (3.12.6-0ubuntu1) ... 105s Preparing to unpack .../01-tzdata_2024b-4ubuntu1_all.deb ... 105s Unpacking tzdata (2024b-4ubuntu1) over (2024b-1ubuntu2) ... 106s Preparing to unpack .../02-python3.12_3.12.8-3_armhf.deb ... 106s Unpacking python3.12 (3.12.8-3) over (3.12.7-3) ... 106s Preparing to unpack .../03-libpython3.12-stdlib_3.12.8-3_armhf.deb ... 106s Unpacking libpython3.12-stdlib:armhf (3.12.8-3) over (3.12.7-3) ... 106s Preparing to unpack .../04-python3.12-minimal_3.12.8-3_armhf.deb ... 106s Unpacking python3.12-minimal (3.12.8-3) over (3.12.7-3) ... 106s Preparing to unpack .../05-libpython3.12-minimal_3.12.8-3_armhf.deb ... 106s Unpacking libpython3.12-minimal:armhf (3.12.8-3) over (3.12.7-3) ... 106s Preparing to unpack .../06-libpython3-stdlib_3.12.8-1_armhf.deb ... 106s Unpacking libpython3-stdlib:armhf (3.12.8-1) over (3.12.6-0ubuntu1) ... 106s Preparing to unpack .../07-rsync_3.3.0+ds1-2_armhf.deb ... 106s Unpacking rsync (3.3.0+ds1-2) over (3.3.0-1) ... 106s Preparing to unpack .../08-python-apt-common_2.9.6build1_all.deb ... 106s Unpacking python-apt-common (2.9.6build1) over (2.9.0ubuntu2) ... 106s Preparing to unpack .../09-python3-apt_2.9.6build1_armhf.deb ... 107s Unpacking python3-apt (2.9.6build1) over (2.9.0ubuntu2) ... 107s Preparing to unpack .../10-python3-problem-report_2.31.0-0ubuntu3_all.deb ... 107s Unpacking python3-problem-report (2.31.0-0ubuntu3) over (2.30.0-0ubuntu5) ... 107s Preparing to unpack .../11-python3-apport_2.31.0-0ubuntu3_all.deb ... 107s Unpacking python3-apport (2.31.0-0ubuntu3) over (2.30.0-0ubuntu5) ... 107s Preparing to unpack .../12-libglib2.0-data_2.82.4-1_all.deb ... 107s Unpacking libglib2.0-data (2.82.4-1) over (2.82.2-3) ... 107s Preparing to unpack .../13-libglib2.0-bin_2.82.4-1_armhf.deb ... 107s Unpacking libglib2.0-bin (2.82.4-1) over (2.82.2-3) ... 107s Preparing to unpack .../14-gir1.2-girepository-2.0_1.82.0-3_armhf.deb ... 107s Unpacking gir1.2-girepository-2.0:armhf (1.82.0-3) over (1.82.0-2) ... 107s Preparing to unpack .../15-gir1.2-glib-2.0_2.82.4-1_armhf.deb ... 107s Unpacking gir1.2-glib-2.0:armhf (2.82.4-1) over (2.82.2-3) ... 107s Preparing to unpack .../16-libglib2.0-0t64_2.82.4-1_armhf.deb ... 107s Unpacking libglib2.0-0t64:armhf (2.82.4-1) over (2.82.2-3) ... 107s Preparing to unpack .../17-libgirepository-1.0-1_1.82.0-3_armhf.deb ... 107s Unpacking libgirepository-1.0-1:armhf (1.82.0-3) over (1.82.0-2) ... 107s Preparing to unpack .../18-apport-core-dump-handler_2.31.0-0ubuntu3_all.deb ... 107s Unpacking apport-core-dump-handler (2.31.0-0ubuntu3) over (2.30.0-0ubuntu5) ... 107s Preparing to unpack .../19-apport_2.31.0-0ubuntu3_all.deb ... 107s Unpacking apport (2.31.0-0ubuntu3) over (2.30.0-0ubuntu5) ... 107s Preparing to unpack .../20-libcap-ng0_0.8.5-4_armhf.deb ... 107s Unpacking libcap-ng0:armhf (0.8.5-4) over (0.8.5-3build1) ... 107s Setting up libcap-ng0:armhf (0.8.5-4) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59953 files and directories currently installed.) 107s Preparing to unpack .../libunistring5_1.3-1_armhf.deb ... 107s Unpacking libunistring5:armhf (1.3-1) over (1.2-1) ... 107s Setting up libunistring5:armhf (1.3-1) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59953 files and directories currently installed.) 107s Preparing to unpack .../00-iputils-ping_3%3a20240905-1ubuntu1_armhf.deb ... 107s Unpacking iputils-ping (3:20240905-1ubuntu1) over (3:20240117-1build1) ... 108s Preparing to unpack .../01-libbpf1_1%3a1.5.0-2_armhf.deb ... 108s Unpacking libbpf1:armhf (1:1.5.0-2) over (1:1.5.0-1) ... 108s Preparing to unpack .../02-libfribidi0_1.0.16-1_armhf.deb ... 108s Unpacking libfribidi0:armhf (1.0.16-1) over (1.0.15-1) ... 108s Preparing to unpack .../03-python3-newt_0.52.24-4ubuntu1_armhf.deb ... 108s Unpacking python3-newt:armhf (0.52.24-4ubuntu1) over (0.52.24-2ubuntu4) ... 108s Preparing to unpack .../04-libnewt0.52_0.52.24-4ubuntu1_armhf.deb ... 108s Unpacking libnewt0.52:armhf (0.52.24-4ubuntu1) over (0.52.24-2ubuntu4) ... 108s Preparing to unpack .../05-libxml2_2.12.7+dfsg+really2.9.14-0.2ubuntu2_armhf.deb ... 108s Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2ubuntu2) over (2.12.7+dfsg-3) ... 108s Preparing to unpack .../06-libyaml-0-2_0.2.5-2_armhf.deb ... 108s Unpacking libyaml-0-2:armhf (0.2.5-2) over (0.2.5-1build1) ... 108s Preparing to unpack .../07-locales_2.40-4ubuntu1_all.deb ... 108s Unpacking locales (2.40-4ubuntu1) over (2.40-1ubuntu3) ... 108s Preparing to unpack .../08-openssl_3.4.0-1ubuntu2_armhf.deb ... 108s Unpacking openssl (3.4.0-1ubuntu2) over (3.3.1-2ubuntu2) ... 108s Preparing to unpack .../09-python3-rich_13.9.4-1_all.deb ... 108s Unpacking python3-rich (13.9.4-1) over (13.7.1-1) ... 108s Preparing to unpack .../10-ucf_3.0046_all.deb ... 108s Unpacking ucf (3.0046) over (3.0043+nmu1) ... 108s Preparing to unpack .../11-whiptail_0.52.24-4ubuntu1_armhf.deb ... 108s Unpacking whiptail (0.52.24-4ubuntu1) over (0.52.24-2ubuntu4) ... 108s Preparing to unpack .../12-bash-completion_1%3a2.16.0-6_all.deb ... 108s Unpacking bash-completion (1:2.16.0-6) over (1:2.14.0-2) ... 109s Preparing to unpack .../13-ethtool_1%3a6.11-1_armhf.deb ... 109s Unpacking ethtool (1:6.11-1) over (1:6.10-1) ... 109s Preparing to unpack .../14-gettext-base_0.22.5-3_armhf.deb ... 109s Unpacking gettext-base (0.22.5-3) over (0.22.5-2) ... 109s Preparing to unpack .../15-groff-base_1.23.0-7_armhf.deb ... 109s Unpacking groff-base (1.23.0-7) over (1.23.0-5) ... 109s Preparing to unpack .../16-iputils-tracepath_3%3a20240905-1ubuntu1_armhf.deb ... 109s Unpacking iputils-tracepath (3:20240905-1ubuntu1) over (3:20240117-1build1) ... 109s Preparing to unpack .../17-libpng16-16t64_1.6.44-3_armhf.deb ... 109s Unpacking libpng16-16t64:armhf (1.6.44-3) over (1.6.44-2) ... 109s Preparing to unpack .../18-libtraceevent1-plugin_1%3a1.8.4-2_armhf.deb ... 109s Unpacking libtraceevent1-plugin:armhf (1:1.8.4-2) over (1:1.8.4-1) ... 109s Preparing to unpack .../19-libtraceevent1_1%3a1.8.4-2_armhf.deb ... 109s Unpacking libtraceevent1:armhf (1:1.8.4-2) over (1:1.8.4-1) ... 109s Preparing to unpack .../20-libxkbcommon0_1.7.0-2_armhf.deb ... 109s Unpacking libxkbcommon0:armhf (1.7.0-2) over (1.7.0-1) ... 109s Preparing to unpack .../21-nano_8.3-1_armhf.deb ... 109s Unpacking nano (8.3-1) over (8.2-1) ... 109s Preparing to unpack .../22-pci.ids_0.0~2024.11.25-1_all.deb ... 109s Unpacking pci.ids (0.0~2024.11.25-1) over (0.0~2024.10.24-1) ... 109s Preparing to unpack .../23-publicsuffix_20241206.1516-0.1_all.deb ... 109s Unpacking publicsuffix (20241206.1516-0.1) over (20231001.0357-0.1) ... 109s Preparing to unpack .../24-python3.13-gdbm_3.13.1-2_armhf.deb ... 109s Unpacking python3.13-gdbm (3.13.1-2) over (3.13.0-2) ... 109s Preparing to unpack .../25-python3.12-gdbm_3.12.8-3_armhf.deb ... 109s Unpacking python3.12-gdbm (3.12.8-3) over (3.12.7-3) ... 109s Preparing to unpack .../26-python3-gdbm_3.13.1-1_armhf.deb ... 109s Unpacking python3-gdbm:armhf (3.13.1-1) over (3.12.7-1) ... 109s Preparing to unpack .../27-usb.ids_2025.01.14-1_all.deb ... 109s Unpacking usb.ids (2025.01.14-1) over (2024.07.04-1) ... 109s Preparing to unpack .../28-xauth_1%3a1.1.2-1.1_armhf.deb ... 109s Unpacking xauth (1:1.1.2-1.1) over (1:1.1.2-1build1) ... 109s Preparing to unpack .../29-libcurl3t64-gnutls_8.11.1-1ubuntu1_armhf.deb ... 109s Unpacking libcurl3t64-gnutls:armhf (8.11.1-1ubuntu1) over (8.11.0-1ubuntu2) ... 109s Preparing to unpack .../30-libappstream5_1.0.4-1_armhf.deb ... 109s Unpacking libappstream5:armhf (1.0.4-1) over (1.0.3-1) ... 109s Preparing to unpack .../31-appstream_1.0.4-1_armhf.deb ... 109s Unpacking appstream (1.0.4-1) over (1.0.3-1) ... 109s Preparing to unpack .../32-libctf0_2.43.50.20241230-1ubuntu1_armhf.deb ... 109s Unpacking libctf0:armhf (2.43.50.20241230-1ubuntu1) over (2.43.1-4ubuntu1) ... 109s Preparing to unpack .../33-libctf-nobfd0_2.43.50.20241230-1ubuntu1_armhf.deb ... 109s Unpacking libctf-nobfd0:armhf (2.43.50.20241230-1ubuntu1) over (2.43.1-4ubuntu1) ... 109s Preparing to unpack .../34-binutils-arm-linux-gnueabihf_2.43.50.20241230-1ubuntu1_armhf.deb ... 109s Unpacking binutils-arm-linux-gnueabihf (2.43.50.20241230-1ubuntu1) over (2.43.1-4ubuntu1) ... 110s Preparing to unpack .../35-libbinutils_2.43.50.20241230-1ubuntu1_armhf.deb ... 110s Unpacking libbinutils:armhf (2.43.50.20241230-1ubuntu1) over (2.43.1-4ubuntu1) ... 110s Preparing to unpack .../36-binutils_2.43.50.20241230-1ubuntu1_armhf.deb ... 110s Unpacking binutils (2.43.50.20241230-1ubuntu1) over (2.43.1-4ubuntu1) ... 110s Preparing to unpack .../37-binutils-common_2.43.50.20241230-1ubuntu1_armhf.deb ... 110s Unpacking binutils-common:armhf (2.43.50.20241230-1ubuntu1) over (2.43.1-4ubuntu1) ... 110s Preparing to unpack .../38-libsframe1_2.43.50.20241230-1ubuntu1_armhf.deb ... 110s Unpacking libsframe1:armhf (2.43.50.20241230-1ubuntu1) over (2.43.1-4ubuntu1) ... 110s Preparing to unpack .../39-python3-jinja2_3.1.3-1.1_all.deb ... 110s Unpacking python3-jinja2 (3.1.3-1.1) over (3.1.3-1ubuntu1) ... 110s Preparing to unpack .../40-python3-json-pointer_2.4-3_all.deb ... 110s Unpacking python3-json-pointer (2.4-3) over (2.4-2) ... 110s Preparing to unpack .../41-python3-jsonpatch_1.32-5_all.deb ... 110s Unpacking python3-jsonpatch (1.32-5) over (1.32-4) ... 110s Selecting previously unselected package python3-bcrypt. 110s Preparing to unpack .../42-python3-bcrypt_4.2.0-2.1_armhf.deb ... 110s Unpacking python3-bcrypt (4.2.0-2.1) ... 110s Preparing to unpack .../43-python3-cryptography_43.0.0-1_armhf.deb ... 110s Unpacking python3-cryptography (43.0.0-1) over (42.0.5-2build1) ... 110s Preparing to unpack .../44-python3-jwt_2.10.1-2_all.deb ... 110s Unpacking python3-jwt (2.10.1-2) over (2.7.0-1) ... 110s Preparing to unpack .../45-python3-oauthlib_3.2.2-3_all.deb ... 110s Unpacking python3-oauthlib (3.2.2-3) over (3.2.2-2) ... 111s Preparing to unpack .../46-cloud-init-base_25.1~2g4ee65391-0ubuntu1_all.deb ... 111s Unpacking cloud-init-base (25.1~2g4ee65391-0ubuntu1) over (24.4-0ubuntu1) ... 111s dpkg: warning: unable to delete old directory '/lib/systemd/system/sshd-keygen@.service.d': Directory not empty 111s Preparing to unpack .../47-curl_8.11.1-1ubuntu1_armhf.deb ... 111s Unpacking curl (8.11.1-1ubuntu1) over (8.11.0-1ubuntu2) ... 111s Preparing to unpack .../48-libcurl4t64_8.11.1-1ubuntu1_armhf.deb ... 111s Unpacking libcurl4t64:armhf (8.11.1-1ubuntu1) over (8.11.0-1ubuntu2) ... 111s Preparing to unpack .../49-dpkg-dev_1.22.11ubuntu4_all.deb ... 111s Unpacking dpkg-dev (1.22.11ubuntu4) over (1.22.11ubuntu3) ... 111s Preparing to unpack .../50-libdpkg-perl_1.22.11ubuntu4_all.deb ... 111s Unpacking libdpkg-perl (1.22.11ubuntu4) over (1.22.11ubuntu3) ... 111s Preparing to unpack .../51-make_4.4.1-1_armhf.deb ... 111s Unpacking make (4.4.1-1) over (4.3-4.1build2) ... 111s Preparing to unpack .../52-dracut-install_105-2ubuntu5_armhf.deb ... 111s Unpacking dracut-install (105-2ubuntu5) over (105-2ubuntu3) ... 111s Preparing to unpack .../53-libjson-glib-1.0-common_1.10.6+ds-1_all.deb ... 111s Unpacking libjson-glib-1.0-common (1.10.6+ds-1) over (1.10.0+ds-3) ... 111s Preparing to unpack .../54-libjson-glib-1.0-0_1.10.6+ds-1_armhf.deb ... 111s Unpacking libjson-glib-1.0-0:armhf (1.10.6+ds-1) over (1.10.0+ds-3) ... 111s Preparing to unpack .../55-fwupd_2.0.3-3_armhf.deb ... 112s Unpacking fwupd (2.0.3-3) over (2.0.2-1) ... 112s Preparing to unpack .../56-libfwupd3_2.0.3-3_armhf.deb ... 112s Unpacking libfwupd3:armhf (2.0.3-3) over (2.0.2-1) ... 112s Preparing to unpack .../57-libqmi-proxy_1.35.6-1_armhf.deb ... 112s Unpacking libqmi-proxy (1.35.6-1) over (1.35.2-0ubuntu2) ... 112s Preparing to unpack .../58-libqmi-glib5_1.35.6-1_armhf.deb ... 112s Unpacking libqmi-glib5:armhf (1.35.6-1) over (1.35.2-0ubuntu2) ... 112s Preparing to unpack .../59-gnupg-l10n_2.4.4-2ubuntu21_all.deb ... 112s Unpacking gnupg-l10n (2.4.4-2ubuntu21) over (2.4.4-2ubuntu18) ... 112s Preparing to unpack .../60-libftdi1-2_1.5-8_armhf.deb ... 112s Unpacking libftdi1-2:armhf (1.5-8) over (1.5-7build1) ... 112s Preparing to unpack .../61-libgpgme11t64_1.24.1-2ubuntu1_armhf.deb ... 112s Unpacking libgpgme11t64:armhf (1.24.1-2ubuntu1) over (1.24.0-2ubuntu1) ... 112s Preparing to unpack .../62-libgstreamer1.0-0_1.24.10-2_armhf.deb ... 112s Unpacking libgstreamer1.0-0:armhf (1.24.10-2) over (1.24.9-1) ... 112s Preparing to unpack .../63-libgudev-1.0-0_1%3a238-6_armhf.deb ... 112s Unpacking libgudev-1.0-0:armhf (1:238-6) over (1:238-5ubuntu1) ... 112s Selecting previously unselected package libicu76:armhf. 112s Preparing to unpack .../64-libicu76_76.1-1ubuntu2_armhf.deb ... 112s Unpacking libicu76:armhf (76.1-1ubuntu2) ... 112s Preparing to unpack .../65-libnss3_2%3a3.106-1ubuntu1_armhf.deb ... 112s Unpacking libnss3:armhf (2:3.106-1ubuntu1) over (2:3.103-1) ... 112s Preparing to unpack .../66-libwrap0_7.6.q-34_armhf.deb ... 112s Unpacking libwrap0:armhf (7.6.q-34) over (7.6.q-33) ... 113s Preparing to unpack .../67-python3-attr_24.2.0-1_all.deb ... 113s Unpacking python3-attr (24.2.0-1) over (23.2.0-2) ... 113s Preparing to unpack .../68-python3-certifi_2024.12.14+ds-1_all.deb ... 113s Unpacking python3-certifi (2024.12.14+ds-1) over (2024.8.30+dfsg-1) ... 113s Preparing to unpack .../69-python3-chardet_5.2.0+dfsg-2_all.deb ... 113s Unpacking python3-chardet (5.2.0+dfsg-2) over (5.2.0+dfsg-1) ... 113s Preparing to unpack .../70-python3-openssl_24.3.0-1_all.deb ... 113s Unpacking python3-openssl (24.3.0-1) over (24.2.1-1) ... 113s Preparing to unpack .../71-python3-pkg-resources_75.6.0-1_all.deb ... 113s Unpacking python3-pkg-resources (75.6.0-1) over (75.2.0-1) ... 113s Preparing to unpack .../72-python3-setuptools_75.6.0-1_all.deb ... 113s Unpacking python3-setuptools (75.6.0-1) over (75.2.0-1) ... 113s Preparing to unpack .../73-software-properties-common_0.108_all.deb ... 113s Unpacking software-properties-common (0.108) over (0.105) ... 114s Preparing to unpack .../74-python3-software-properties_0.108_all.deb ... 114s Unpacking python3-software-properties (0.108) over (0.105) ... 114s Preparing to unpack .../75-python3-wadllib_2.0.0-2_all.deb ... 114s Unpacking python3-wadllib (2.0.0-2) over (2.0.0-1) ... 114s Preparing to unpack .../76-xfsprogs_6.8.0-2.2ubuntu3_armhf.deb ... 114s Unpacking xfsprogs (6.8.0-2.2ubuntu3) over (6.8.0-2.2ubuntu2) ... 114s Preparing to unpack .../77-cloud-init_25.1~2g4ee65391-0ubuntu1_all.deb ... 114s Unpacking cloud-init (25.1~2g4ee65391-0ubuntu1) over (24.4-0ubuntu1) ... 114s Setting up systemd-sysv (257-2ubuntu1) ... 114s Setting up pci.ids (0.0~2024.11.25-1) ... 114s Setting up libnewt0.52:armhf (0.52.24-4ubuntu1) ... 114s Setting up apt-utils (2.9.18) ... 114s Setting up bsdextrautils (2.40.2-1ubuntu2) ... 114s Setting up libcurl4t64:armhf (8.11.1-1ubuntu1) ... 114s Setting up libyaml-0-2:armhf (0.2.5-2) ... 114s Setting up python3.12-gdbm (3.12.8-3) ... 114s Setting up libpython3.12-minimal:armhf (3.12.8-3) ... 114s Setting up binutils-common:armhf (2.43.50.20241230-1ubuntu1) ... 114s Setting up libcurl3t64-gnutls:armhf (8.11.1-1ubuntu1) ... 114s Setting up libctf-nobfd0:armhf (2.43.50.20241230-1ubuntu1) ... 114s Setting up gettext-base (0.22.5-3) ... 114s Setting up libnss-systemd:armhf (257-2ubuntu1) ... 114s Setting up libnss3:armhf (2:3.106-1ubuntu1) ... 114s Setting up locales (2.40-4ubuntu1) ... 115s Generating locales (this might take a while)... 117s en_US.UTF-8... done 117s Generation complete. 117s Setting up libsframe1:armhf (2.43.50.20241230-1ubuntu1) ... 117s Setting up tzdata (2024b-4ubuntu1) ... 117s 117s Current default time zone: 'Etc/UTC' 117s Local time is now: Sat Jan 18 09:07:07 UTC 2025. 117s Universal Time is now: Sat Jan 18 09:07:07 UTC 2025. 117s Run 'dpkg-reconfigure tzdata' if you wish to change it. 117s 117s Setting up eject (2.40.2-1ubuntu2) ... 117s Setting up libftdi1-2:armhf (1.5-8) ... 117s Setting up libglib2.0-data (2.82.4-1) ... 117s Setting up systemd-cryptsetup (257-2ubuntu1) ... 117s Setting up libwrap0:armhf (7.6.q-34) ... 117s Setting up make (4.4.1-1) ... 117s Setting up gnupg-l10n (2.4.4-2ubuntu21) ... 117s Setting up bash-completion (1:2.16.0-6) ... 117s Setting up libfribidi0:armhf (1.0.16-1) ... 117s Setting up libpng16-16t64:armhf (1.6.44-3) ... 117s Setting up systemd-timesyncd (257-2ubuntu1) ... 117s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 117s Setting up libatomic1:armhf (14.2.0-13ubuntu1) ... 117s Setting up udev (257-2ubuntu1) ... 118s Setting up usb.ids (2025.01.14-1) ... 118s Setting up ucf (3.0046) ... 118s Installing new version of config file /etc/ucf.conf ... 118s Setting up libdpkg-perl (1.22.11ubuntu4) ... 118s Setting up libfdisk1:armhf (2.40.2-1ubuntu2) ... 118s Setting up nano (8.3-1) ... 118s Installing new version of config file /etc/nanorc ... 118s Setting up whiptail (0.52.24-4ubuntu1) ... 118s Setting up python-apt-common (2.9.6build1) ... 118s Setting up dracut-install (105-2ubuntu5) ... 118s Setting up uuid-runtime (2.40.2-1ubuntu2) ... 119s uuidd.service is a disabled or a static unit not running, not starting it. 119s Setting up xauth (1:1.1.2-1.1) ... 119s Setting up groff-base (1.23.0-7) ... 119s Setting up libtraceevent1:armhf (1:1.8.4-2) ... 119s Setting up libpam-systemd:armhf (257-2ubuntu1) ... 119s Setting up libjson-glib-1.0-common (1.10.6+ds-1) ... 119s Setting up curl (8.11.1-1ubuntu1) ... 119s Setting up libicu76:armhf (76.1-1ubuntu2) ... 119s Setting up keyboard-configuration (1.226ubuntu3) ... 121s Your console font configuration will be updated the next time your system 121s boots. If you want to update it now, run 'setupcon' from a virtual console. 121s update-initramfs: deferring update (trigger activated) 121s Setting up libbinutils:armhf (2.43.50.20241230-1ubuntu1) ... 121s Setting up openssl (3.4.0-1ubuntu2) ... 121s Installing new version of config file /etc/ssl/openssl.cnf ... 121s Setting up libgpg-error-l10n (1.51-3) ... 121s Setting up iputils-ping (3:20240905-1ubuntu1) ... 121s Setting up readline-common (8.2-6) ... 121s Setting up publicsuffix (20241206.1516-0.1) ... 121s Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2ubuntu2) ... 121s Setting up libbpf1:armhf (1:1.5.0-2) ... 121s Setting up iputils-tracepath (3:20240905-1ubuntu1) ... 121s Setting up rsync (3.3.0+ds1-2) ... 121s rsync.service is a disabled or a static unit not running, not starting it. 121s Setting up python3.13-gdbm (3.13.1-2) ... 121s Setting up ethtool (1:6.11-1) ... 121s Setting up gnupg-utils (2.4.4-2ubuntu21) ... 121s Setting up systemd-resolved (257-2ubuntu1) ... 122s Setting up libxkbcommon0:armhf (1.7.0-2) ... 122s Setting up libctf0:armhf (2.43.50.20241230-1ubuntu1) ... 122s Setting up python3.12-minimal (3.12.8-3) ... 123s Setting up libglib2.0-0t64:armhf (2.82.4-1) ... 123s No schema files found: doing nothing. 123s Setting up gir1.2-glib-2.0:armhf (2.82.4-1) ... 123s Setting up libreadline8t64:armhf (8.2-6) ... 123s Setting up libtraceevent1-plugin:armhf (1:1.8.4-2) ... 123s Setting up gpgconf (2.4.4-2ubuntu21) ... 123s Setting up libgirepository-1.0-1:armhf (1.82.0-3) ... 123s Setting up console-setup-linux (1.226ubuntu3) ... 124s Setting up binutils-arm-linux-gnueabihf (2.43.50.20241230-1ubuntu1) ... 124s Setting up gpg (2.4.4-2ubuntu21) ... 124s Setting up libgudev-1.0-0:armhf (1:238-6) ... 124s Setting up libgstreamer1.0-0:armhf (1.24.10-2) ... 124s Setcap worked! gst-ptp-helper is not suid! 124s Setting up console-setup (1.226ubuntu3) ... 125s update-initramfs: deferring update (trigger activated) 125s Setting up gpg-agent (2.4.4-2ubuntu21) ... 125s Setting up libpython3.12-stdlib:armhf (3.12.8-3) ... 125s Setting up python3.12 (3.12.8-3) ... 127s Setting up gpgsm (2.4.4-2ubuntu21) ... 127s Setting up libglib2.0-bin (2.82.4-1) ... 127s Setting up libappstream5:armhf (1.0.4-1) ... 127s Setting up libqmi-glib5:armhf (1.35.6-1) ... 127s Setting up binutils (2.43.50.20241230-1ubuntu1) ... 127s Setting up fdisk (2.40.2-1ubuntu2) ... 127s Setting up dpkg-dev (1.22.11ubuntu4) ... 127s Setting up libjson-glib-1.0-0:armhf (1.10.6+ds-1) ... 127s Setting up dirmngr (2.4.4-2ubuntu21) ... 127s Setting up appstream (1.0.4-1) ... 127s ✔ Metadata cache was updated successfully. 127s Setting up gir1.2-girepository-2.0:armhf (1.82.0-3) ... 127s Setting up keyboxd (2.4.4-2ubuntu21) ... 127s Setting up gnupg (2.4.4-2ubuntu21) ... 127s Setting up libgpgme11t64:armhf (1.24.1-2ubuntu1) ... 127s Setting up libpython3-stdlib:armhf (3.12.8-1) ... 127s Setting up gpg-wks-client (2.4.4-2ubuntu21) ... 127s Setting up libqmi-proxy (1.35.6-1) ... 127s Setting up libfwupd3:armhf (2.0.3-3) ... 127s Setting up python3 (3.12.8-1) ... 127s Setting up python3-newt:armhf (0.52.24-4ubuntu1) ... 127s Setting up python3-jinja2 (3.1.3-1.1) ... 128s Setting up python3-chardet (5.2.0+dfsg-2) ... 128s Setting up python3-certifi (2024.12.14+ds-1) ... 128s Setting up python3-wadllib (2.0.0-2) ... 128s Setting up xfsprogs (6.8.0-2.2ubuntu3) ... 128s update-initramfs: deferring update (trigger activated) 129s Setting up python3-json-pointer (2.4-3) ... 129s Setting up fwupd (2.0.3-3) ... 129s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 129s fwupd.service is a disabled or a static unit not running, not starting it. 129s Setting up python3-pkg-resources (75.6.0-1) ... 130s Setting up python3-attr (24.2.0-1) ... 130s Setting up python3-setuptools (75.6.0-1) ... 131s Setting up python3-jwt (2.10.1-2) ... 131s Setting up python3-rich (13.9.4-1) ... 131s Setting up python3-gdbm:armhf (3.13.1-1) ... 131s Setting up python3-problem-report (2.31.0-0ubuntu3) ... 131s Setting up python3-apt (2.9.6build1) ... 131s Setting up python3-jsonpatch (1.32-5) ... 131s Setting up python3-bcrypt (4.2.0-2.1) ... 132s Setting up python3-apport (2.31.0-0ubuntu3) ... 132s Setting up python3-software-properties (0.108) ... 132s Setting up python3-cryptography (43.0.0-1) ... 132s Setting up python3-openssl (24.3.0-1) ... 132s Setting up software-properties-common (0.108) ... 132s Setting up python3-oauthlib (3.2.2-3) ... 133s Setting up cloud-init-base (25.1~2g4ee65391-0ubuntu1) ... 133s Installing new version of config file /etc/cloud/templates/sources.list.debian.deb822.tmpl ... 133s Installing new version of config file /etc/cloud/templates/sources.list.ubuntu.deb822.tmpl ... 134s Setting up cloud-init (25.1~2g4ee65391-0ubuntu1) ... 134s Setting up apport-core-dump-handler (2.31.0-0ubuntu3) ... 135s Setting up apport (2.31.0-0ubuntu3) ... 136s apport-autoreport.service is a disabled or a static unit not running, not starting it. 136s Processing triggers for dbus (1.14.10-4ubuntu5) ... 136s Processing triggers for shared-mime-info (2.4-5) ... 136s Warning: program compiled against libxml 212 using older 209 136s Processing triggers for debianutils (5.21) ... 136s Processing triggers for install-info (7.1.1-1) ... 136s Processing triggers for initramfs-tools (0.142ubuntu35) ... 136s Processing triggers for libc-bin (2.40-4ubuntu1) ... 136s Processing triggers for rsyslog (8.2406.0-1ubuntu2) ... 137s Processing triggers for systemd (257-2ubuntu1) ... 137s Processing triggers for man-db (2.13.0-1) ... 141s Reading package lists... 141s Building dependency tree... 141s Reading state information... 142s Starting pkgProblemResolver with broken count: 0 142s Starting 2 pkgProblemResolver with broken count: 0 142s Done 143s The following packages will be REMOVED: 143s libassuan0* libicu74* 143s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 143s After this operation, 34.7 MB disk space will be freed. 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 60016 files and directories currently installed.) 143s Removing libassuan0:armhf (2.5.6-1build1) ... 143s Removing libicu74:armhf (74.2-1ubuntu4) ... 143s Processing triggers for libc-bin (2.40-4ubuntu1) ... 146s autopkgtest [09:07:36]: rebooting testbed after setup commands that affected boot 190s autopkgtest [09:08:20]: testbed running kernel: Linux 6.8.0-49-generic #49~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Nov 6 18:12:14 UTC 2 219s autopkgtest [09:08:49]: @@@@@@@@@@@@@@@@@@@@ apt-source zarr 237s Get:1 http://ftpmaster.internal/ubuntu plucky/universe zarr 2.18.4+ds-1 (dsc) [2647 B] 237s Get:2 http://ftpmaster.internal/ubuntu plucky/universe zarr 2.18.4+ds-1 (tar) [987 kB] 237s Get:3 http://ftpmaster.internal/ubuntu plucky/universe zarr 2.18.4+ds-1 (diff) [5680 B] 237s gpgv: Signature made Mon Dec 16 21:43:41 2024 UTC 237s gpgv: using RSA key 3B70F209A5FFD68903C472C5EBF48AB2578F9812 237s gpgv: issuer "antonio.valentino@tiscali.it" 237s gpgv: Can't check signature: No public key 237s dpkg-source: warning: cannot verify inline signature for ./zarr_2.18.4+ds-1.dsc: no acceptable signature found 237s autopkgtest [09:09:07]: testing package zarr version 2.18.4+ds-1 241s autopkgtest [09:09:11]: build not needed 246s autopkgtest [09:09:16]: test pybuild-autopkgtest: preparing testbed 249s Reading package lists... 249s Building dependency tree... 249s Reading state information... 249s Starting pkgProblemResolver with broken count: 0 249s Starting 2 pkgProblemResolver with broken count: 0 249s Done 250s The following NEW packages will be installed: 250s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 250s cpp-14-arm-linux-gnueabihf cpp-arm-linux-gnueabihf debhelper debugedit 250s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz g++ 250s g++-14 g++-14-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc gcc-14 250s gcc-14-arm-linux-gnueabihf gcc-arm-linux-gnueabihf gettext intltool-debian 250s libaec0 libarchive-zip-perl libasan8 libblas3 libblosc1 libc-dev-bin 250s libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl 250s libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgomp1 250s libhdf5-103-1t64 libhdf5-hl-100t64 libisl23 libjs-jquery libjs-sphinxdoc 250s libjs-underscore libjson-perl liblapack3 liblzf1 libmpc3 250s libpython3.13-minimal libpython3.13-stdlib libsnappy1v5 libstdc++-14-dev 250s libsz2 libtool libubsan1 linux-libc-dev m4 po-debconf 250s pybuild-plugin-autopkgtest pybuild-plugin-pyproject python3-alabaster 250s python3-all python3-asciitree python3-bs4 python3-build python3-defusedxml 250s python3-deprecated python3-docutils python3-fasteners python3-fsspec 250s python3-h5py python3-h5py-serial python3-imagesize python3-iniconfig 250s python3-installer python3-monotonic python3-msgpack python3-numcodecs 250s python3-numpy python3-numpydoc python3-packaging python3-pluggy 250s python3-pydata-sphinx-theme python3-pyproject-hooks python3-pytest 250s python3-pytest-doctestplus python3-pytest-timeout python3-roman 250s python3-setuptools-scm python3-snowballstemmer python3-soupsieve 250s python3-sphinx python3-sphinx-automodapi python3-sphinx-copybutton 250s python3-sphinx-design python3-sphinx-issues python3-tabulate python3-toml 250s python3-wheel python3-wrapt python3-zarr python3.13 python3.13-minimal 250s rpcsvc-proto sphinx-common 250s 0 upgraded, 107 newly installed, 0 to remove and 0 not upgraded. 250s Need to get 74.9 MB of archives. 250s After this operation, 260 MB of additional disk space will be used. 250s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-minimal armhf 3.13.1-2 [868 kB] 251s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-minimal armhf 3.13.1-2 [2036 kB] 251s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf m4 armhf 1.4.19-4build1 [235 kB] 251s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf autoconf all 2.72-3 [382 kB] 251s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf autotools-dev all 20220109.1 [44.9 kB] 251s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf automake all 1:1.16.5-1.3ubuntu1 [558 kB] 251s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf autopoint all 0.22.5-3 [616 kB] 251s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libc-dev-bin armhf 2.40-4ubuntu1 [19.2 kB] 251s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf linux-libc-dev armhf 6.11.0-8.8 [1628 kB] 251s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libcrypt-dev armhf 1:4.4.36-5 [119 kB] 251s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB] 251s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libc6-dev armhf 2.40-4ubuntu1 [1358 kB] 251s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libisl23 armhf 0.27-1 [546 kB] 251s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libmpc3 armhf 1.3.1-1build2 [47.1 kB] 251s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14-arm-linux-gnueabihf armhf 14.2.0-13ubuntu1 [9221 kB] 252s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14 armhf 14.2.0-13ubuntu1 [1032 B] 252s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-arm-linux-gnueabihf armhf 4:14.1.0-2ubuntu1 [5464 B] 252s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf cpp armhf 4:14.1.0-2ubuntu1 [22.4 kB] 252s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libcc1-0 armhf 14.2.0-13ubuntu1 [43.4 kB] 252s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-13ubuntu1 [125 kB] 252s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libasan8 armhf 14.2.0-13ubuntu1 [2901 kB] 252s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libubsan1 armhf 14.2.0-13ubuntu1 [1151 kB] 252s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-14-dev armhf 14.2.0-13ubuntu1 [897 kB] 252s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-arm-linux-gnueabihf armhf 14.2.0-13ubuntu1 [18.0 MB] 252s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14 armhf 14.2.0-13ubuntu1 [504 kB] 252s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-arm-linux-gnueabihf armhf 4:14.1.0-2ubuntu1 [1222 B] 252s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf gcc armhf 4:14.1.0-2ubuntu1 [5002 B] 252s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++-14-dev armhf 14.2.0-13ubuntu1 [2572 kB] 252s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14-arm-linux-gnueabihf armhf 14.2.0-13ubuntu1 [10.5 MB] 253s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14 armhf 14.2.0-13ubuntu1 [21.1 kB] 253s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf g++-arm-linux-gnueabihf armhf 4:14.1.0-2ubuntu1 [968 B] 253s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf g++ armhf 4:14.1.0-2ubuntu1 [1084 B] 253s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf build-essential armhf 12.10ubuntu1 [4928 B] 253s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 253s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libtool all 2.4.7-8 [166 kB] 253s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf dh-autoreconf all 20 [16.1 kB] 253s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] 253s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 253s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf dh-strip-nondeterminism all 1.14.0-1 [5058 B] 253s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf debugedit armhf 1:5.1-1 [46.5 kB] 253s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf dwz armhf 0.15-1build6 [116 kB] 253s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf gettext armhf 0.22.5-3 [999 kB] 253s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf intltool-debian all 0.35.0+20060710.6 [23.2 kB] 253s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf po-debconf all 1.0.21+nmu1 [233 kB] 253s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf debhelper all 13.20ubuntu1 [893 kB] 253s Get:46 http://ftpmaster.internal/ubuntu plucky/universe armhf dh-python all 6.20241217 [117 kB] 253s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf docutils-common all 0.21.2+dfsg-2 [131 kB] 253s Get:48 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 253s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-4 [126 kB] 253s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf libsnappy1v5 armhf 1.2.1-1 [28.4 kB] 253s Get:51 http://ftpmaster.internal/ubuntu plucky/universe armhf libblosc1 armhf 1.21.5+ds-1build1 [23.7 kB] 253s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-13ubuntu1 [311 kB] 253s Get:53 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 253s Get:54 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-5ubuntu1 [1266 kB] 253s Get:55 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-5ubuntu1 [56.2 kB] 253s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 253s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 253s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-sphinxdoc all 8.1.3-3 [30.9 kB] 253s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-perl all 4.10000-1 [81.9 kB] 253s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-4 [2086 kB] 253s Get:61 http://ftpmaster.internal/ubuntu plucky/universe armhf liblzf1 armhf 3.6-4 [6554 B] 253s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-stdlib armhf 3.13.1-2 [1970 kB] 253s Get:63 http://ftpmaster.internal/ubuntu plucky/universe armhf pybuild-plugin-autopkgtest all 6.20241217 [1746 B] 253s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.2-1 [51.5 kB] 253s Get:65 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 253s Get:66 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-toml all 0.10.2-1 [16.5 kB] 253s Get:67 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-wheel all 0.45.1-1 [57.7 kB] 253s Get:68 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-build all 1.2.2-1 [31.0 kB] 253s Get:69 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 253s Get:70 http://ftpmaster.internal/ubuntu plucky/universe armhf pybuild-plugin-pyproject all 6.20241217 [1730 B] 253s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13 armhf 3.13.1-2 [729 kB] 253s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf python3-all armhf 3.12.8-1 [892 B] 253s Get:73 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-asciitree all 0.3.3-4 [5644 B] 253s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf python3-soupsieve all 2.6-1 [33.0 kB] 253s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf python3-bs4 all 4.12.3-3 [109 kB] 253s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf python3-defusedxml all 0.7.1-3 [42.2 kB] 253s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf python3-wrapt armhf 1.15.0-4 [32.5 kB] 253s Get:78 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-deprecated all 1.2.15-1 [10.5 kB] 253s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf python3-roman all 4.2-1 [10.0 kB] 253s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf python3-docutils all 0.21.2+dfsg-2 [409 kB] 253s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf python3-monotonic all 1.6-3 [5344 B] 253s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf python3-fasteners all 0.18-2 [12.5 kB] 253s Get:83 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fsspec all 2024.10.0-1 [207 kB] 253s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-12 [4001 kB] 253s Get:85 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-h5py-serial armhf 3.11.0-8ubuntu3 [1559 kB] 253s Get:86 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-h5py all 3.11.0-8ubuntu3 [7982 B] 253s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf python3-imagesize all 1.4.1-1 [6844 B] 253s Get:88 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 253s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf python3-msgpack armhf 1.0.3-3build3 [106 kB] 253s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf sphinx-common all 8.1.3-3 [661 kB] 253s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf python3-alabaster all 0.7.16-0.1 [18.5 kB] 253s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 253s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf python3-sphinx all 8.1.3-3 [474 kB] 253s Get:94 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pydata-sphinx-theme all 0.15.4+dfsg-2 [41.5 kB] 253s Get:95 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-numcodecs armhf 0.15.0+ds-1 [484 kB] 253s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tabulate all 0.9.0-1 [45.3 kB] 253s Get:97 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-numpydoc all 1.8.0-1 [52.4 kB] 253s Get:98 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 253s Get:99 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest all 8.3.4-1 [252 kB] 253s Get:100 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest-doctestplus all 1.3.0-1 [23.7 kB] 253s Get:101 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest-timeout all 2.3.1-1 [22.1 kB] 254s Get:102 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-setuptools-scm all 8.1.0-1 [32.2 kB] 254s Get:103 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sphinx-automodapi all 0.18.0-1 [37.6 kB] 254s Get:104 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sphinx-copybutton all 0.5.2-2 [16.6 kB] 254s Get:105 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sphinx-design all 0.6.1-1 [894 kB] 254s Get:106 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sphinx-issues all 5.0.0-1 [10.2 kB] 254s Get:107 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-zarr all 2.18.4+ds-1 [410 kB] 255s Fetched 74.9 MB in 4s (20.3 MB/s) 255s Selecting previously unselected package libpython3.13-minimal:armhf. 255s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59995 files and directories currently installed.) 255s Preparing to unpack .../000-libpython3.13-minimal_3.13.1-2_armhf.deb ... 255s Unpacking libpython3.13-minimal:armhf (3.13.1-2) ... 255s Selecting previously unselected package python3.13-minimal. 255s Preparing to unpack .../001-python3.13-minimal_3.13.1-2_armhf.deb ... 255s Unpacking python3.13-minimal (3.13.1-2) ... 255s Selecting previously unselected package m4. 255s Preparing to unpack .../002-m4_1.4.19-4build1_armhf.deb ... 255s Unpacking m4 (1.4.19-4build1) ... 255s Selecting previously unselected package autoconf. 255s Preparing to unpack .../003-autoconf_2.72-3_all.deb ... 255s Unpacking autoconf (2.72-3) ... 255s Selecting previously unselected package autotools-dev. 255s Preparing to unpack .../004-autotools-dev_20220109.1_all.deb ... 255s Unpacking autotools-dev (20220109.1) ... 255s Selecting previously unselected package automake. 255s Preparing to unpack .../005-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 255s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 255s Selecting previously unselected package autopoint. 255s Preparing to unpack .../006-autopoint_0.22.5-3_all.deb ... 255s Unpacking autopoint (0.22.5-3) ... 255s Selecting previously unselected package libc-dev-bin. 255s Preparing to unpack .../007-libc-dev-bin_2.40-4ubuntu1_armhf.deb ... 255s Unpacking libc-dev-bin (2.40-4ubuntu1) ... 255s Selecting previously unselected package linux-libc-dev:armhf. 255s Preparing to unpack .../008-linux-libc-dev_6.11.0-8.8_armhf.deb ... 255s Unpacking linux-libc-dev:armhf (6.11.0-8.8) ... 255s Selecting previously unselected package libcrypt-dev:armhf. 255s Preparing to unpack .../009-libcrypt-dev_1%3a4.4.36-5_armhf.deb ... 255s Unpacking libcrypt-dev:armhf (1:4.4.36-5) ... 255s Selecting previously unselected package rpcsvc-proto. 255s Preparing to unpack .../010-rpcsvc-proto_1.4.2-0ubuntu7_armhf.deb ... 255s Unpacking rpcsvc-proto (1.4.2-0ubuntu7) ... 256s Selecting previously unselected package libc6-dev:armhf. 256s Preparing to unpack .../011-libc6-dev_2.40-4ubuntu1_armhf.deb ... 256s Unpacking libc6-dev:armhf (2.40-4ubuntu1) ... 256s Selecting previously unselected package libisl23:armhf. 256s Preparing to unpack .../012-libisl23_0.27-1_armhf.deb ... 256s Unpacking libisl23:armhf (0.27-1) ... 256s Selecting previously unselected package libmpc3:armhf. 256s Preparing to unpack .../013-libmpc3_1.3.1-1build2_armhf.deb ... 256s Unpacking libmpc3:armhf (1.3.1-1build2) ... 256s Selecting previously unselected package cpp-14-arm-linux-gnueabihf. 256s Preparing to unpack .../014-cpp-14-arm-linux-gnueabihf_14.2.0-13ubuntu1_armhf.deb ... 256s Unpacking cpp-14-arm-linux-gnueabihf (14.2.0-13ubuntu1) ... 256s Selecting previously unselected package cpp-14. 256s Preparing to unpack .../015-cpp-14_14.2.0-13ubuntu1_armhf.deb ... 256s Unpacking cpp-14 (14.2.0-13ubuntu1) ... 256s Selecting previously unselected package cpp-arm-linux-gnueabihf. 256s Preparing to unpack .../016-cpp-arm-linux-gnueabihf_4%3a14.1.0-2ubuntu1_armhf.deb ... 256s Unpacking cpp-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ... 256s Selecting previously unselected package cpp. 256s Preparing to unpack .../017-cpp_4%3a14.1.0-2ubuntu1_armhf.deb ... 256s Unpacking cpp (4:14.1.0-2ubuntu1) ... 256s Selecting previously unselected package libcc1-0:armhf. 256s Preparing to unpack .../018-libcc1-0_14.2.0-13ubuntu1_armhf.deb ... 256s Unpacking libcc1-0:armhf (14.2.0-13ubuntu1) ... 256s Selecting previously unselected package libgomp1:armhf. 256s Preparing to unpack .../019-libgomp1_14.2.0-13ubuntu1_armhf.deb ... 256s Unpacking libgomp1:armhf (14.2.0-13ubuntu1) ... 256s Selecting previously unselected package libasan8:armhf. 256s Preparing to unpack .../020-libasan8_14.2.0-13ubuntu1_armhf.deb ... 256s Unpacking libasan8:armhf (14.2.0-13ubuntu1) ... 256s Selecting previously unselected package libubsan1:armhf. 256s Preparing to unpack .../021-libubsan1_14.2.0-13ubuntu1_armhf.deb ... 256s Unpacking libubsan1:armhf (14.2.0-13ubuntu1) ... 256s Selecting previously unselected package libgcc-14-dev:armhf. 256s Preparing to unpack .../022-libgcc-14-dev_14.2.0-13ubuntu1_armhf.deb ... 256s Unpacking libgcc-14-dev:armhf (14.2.0-13ubuntu1) ... 256s Selecting previously unselected package gcc-14-arm-linux-gnueabihf. 256s Preparing to unpack .../023-gcc-14-arm-linux-gnueabihf_14.2.0-13ubuntu1_armhf.deb ... 256s Unpacking gcc-14-arm-linux-gnueabihf (14.2.0-13ubuntu1) ... 257s Selecting previously unselected package gcc-14. 257s Preparing to unpack .../024-gcc-14_14.2.0-13ubuntu1_armhf.deb ... 257s Unpacking gcc-14 (14.2.0-13ubuntu1) ... 257s Selecting previously unselected package gcc-arm-linux-gnueabihf. 257s Preparing to unpack .../025-gcc-arm-linux-gnueabihf_4%3a14.1.0-2ubuntu1_armhf.deb ... 257s Unpacking gcc-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ... 257s Selecting previously unselected package gcc. 257s Preparing to unpack .../026-gcc_4%3a14.1.0-2ubuntu1_armhf.deb ... 257s Unpacking gcc (4:14.1.0-2ubuntu1) ... 257s Selecting previously unselected package libstdc++-14-dev:armhf. 257s Preparing to unpack .../027-libstdc++-14-dev_14.2.0-13ubuntu1_armhf.deb ... 257s Unpacking libstdc++-14-dev:armhf (14.2.0-13ubuntu1) ... 257s Selecting previously unselected package g++-14-arm-linux-gnueabihf. 257s Preparing to unpack .../028-g++-14-arm-linux-gnueabihf_14.2.0-13ubuntu1_armhf.deb ... 257s Unpacking g++-14-arm-linux-gnueabihf (14.2.0-13ubuntu1) ... 257s Selecting previously unselected package g++-14. 257s Preparing to unpack .../029-g++-14_14.2.0-13ubuntu1_armhf.deb ... 257s Unpacking g++-14 (14.2.0-13ubuntu1) ... 257s Selecting previously unselected package g++-arm-linux-gnueabihf. 257s Preparing to unpack .../030-g++-arm-linux-gnueabihf_4%3a14.1.0-2ubuntu1_armhf.deb ... 257s Unpacking g++-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ... 258s Selecting previously unselected package g++. 258s Preparing to unpack .../031-g++_4%3a14.1.0-2ubuntu1_armhf.deb ... 258s Unpacking g++ (4:14.1.0-2ubuntu1) ... 258s Selecting previously unselected package build-essential. 258s Preparing to unpack .../032-build-essential_12.10ubuntu1_armhf.deb ... 258s Unpacking build-essential (12.10ubuntu1) ... 258s Selecting previously unselected package libdebhelper-perl. 258s Preparing to unpack .../033-libdebhelper-perl_13.20ubuntu1_all.deb ... 258s Unpacking libdebhelper-perl (13.20ubuntu1) ... 258s Selecting previously unselected package libtool. 258s Preparing to unpack .../034-libtool_2.4.7-8_all.deb ... 258s Unpacking libtool (2.4.7-8) ... 258s Selecting previously unselected package dh-autoreconf. 258s Preparing to unpack .../035-dh-autoreconf_20_all.deb ... 258s Unpacking dh-autoreconf (20) ... 258s Selecting previously unselected package libarchive-zip-perl. 258s Preparing to unpack .../036-libarchive-zip-perl_1.68-1_all.deb ... 258s Unpacking libarchive-zip-perl (1.68-1) ... 258s Selecting previously unselected package libfile-stripnondeterminism-perl. 258s Preparing to unpack .../037-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 258s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 258s Selecting previously unselected package dh-strip-nondeterminism. 258s Preparing to unpack .../038-dh-strip-nondeterminism_1.14.0-1_all.deb ... 258s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 258s Selecting previously unselected package debugedit. 258s Preparing to unpack .../039-debugedit_1%3a5.1-1_armhf.deb ... 258s Unpacking debugedit (1:5.1-1) ... 258s Selecting previously unselected package dwz. 258s Preparing to unpack .../040-dwz_0.15-1build6_armhf.deb ... 258s Unpacking dwz (0.15-1build6) ... 258s Selecting previously unselected package gettext. 258s Preparing to unpack .../041-gettext_0.22.5-3_armhf.deb ... 258s Unpacking gettext (0.22.5-3) ... 258s Selecting previously unselected package intltool-debian. 258s Preparing to unpack .../042-intltool-debian_0.35.0+20060710.6_all.deb ... 258s Unpacking intltool-debian (0.35.0+20060710.6) ... 258s Selecting previously unselected package po-debconf. 258s Preparing to unpack .../043-po-debconf_1.0.21+nmu1_all.deb ... 258s Unpacking po-debconf (1.0.21+nmu1) ... 258s Selecting previously unselected package debhelper. 258s Preparing to unpack .../044-debhelper_13.20ubuntu1_all.deb ... 258s Unpacking debhelper (13.20ubuntu1) ... 258s Selecting previously unselected package dh-python. 258s Preparing to unpack .../045-dh-python_6.20241217_all.deb ... 258s Unpacking dh-python (6.20241217) ... 258s Selecting previously unselected package docutils-common. 258s Preparing to unpack .../046-docutils-common_0.21.2+dfsg-2_all.deb ... 258s Unpacking docutils-common (0.21.2+dfsg-2) ... 258s Selecting previously unselected package libaec0:armhf. 258s Preparing to unpack .../047-libaec0_1.1.3-1_armhf.deb ... 258s Unpacking libaec0:armhf (1.1.3-1) ... 258s Selecting previously unselected package libblas3:armhf. 258s Preparing to unpack .../048-libblas3_3.12.0-4_armhf.deb ... 258s Unpacking libblas3:armhf (3.12.0-4) ... 258s Selecting previously unselected package libsnappy1v5:armhf. 258s Preparing to unpack .../049-libsnappy1v5_1.2.1-1_armhf.deb ... 258s Unpacking libsnappy1v5:armhf (1.2.1-1) ... 258s Selecting previously unselected package libblosc1:armhf. 258s Preparing to unpack .../050-libblosc1_1.21.5+ds-1build1_armhf.deb ... 258s Unpacking libblosc1:armhf (1.21.5+ds-1build1) ... 258s Selecting previously unselected package libgfortran5:armhf. 258s Preparing to unpack .../051-libgfortran5_14.2.0-13ubuntu1_armhf.deb ... 258s Unpacking libgfortran5:armhf (14.2.0-13ubuntu1) ... 258s Selecting previously unselected package libsz2:armhf. 258s Preparing to unpack .../052-libsz2_1.1.3-1_armhf.deb ... 258s Unpacking libsz2:armhf (1.1.3-1) ... 258s Selecting previously unselected package libhdf5-103-1t64:armhf. 258s Preparing to unpack .../053-libhdf5-103-1t64_1.10.10+repack-5ubuntu1_armhf.deb ... 258s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-5ubuntu1) ... 258s Selecting previously unselected package libhdf5-hl-100t64:armhf. 258s Preparing to unpack .../054-libhdf5-hl-100t64_1.10.10+repack-5ubuntu1_armhf.deb ... 258s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-5ubuntu1) ... 258s Selecting previously unselected package libjs-jquery. 258s Preparing to unpack .../055-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 258s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 259s Selecting previously unselected package libjs-underscore. 259s Preparing to unpack .../056-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 259s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 259s Selecting previously unselected package libjs-sphinxdoc. 259s Preparing to unpack .../057-libjs-sphinxdoc_8.1.3-3_all.deb ... 259s Unpacking libjs-sphinxdoc (8.1.3-3) ... 259s Selecting previously unselected package libjson-perl. 259s Preparing to unpack .../058-libjson-perl_4.10000-1_all.deb ... 259s Unpacking libjson-perl (4.10000-1) ... 259s Selecting previously unselected package liblapack3:armhf. 259s Preparing to unpack .../059-liblapack3_3.12.0-4_armhf.deb ... 259s Unpacking liblapack3:armhf (3.12.0-4) ... 259s Selecting previously unselected package liblzf1:armhf. 259s Preparing to unpack .../060-liblzf1_3.6-4_armhf.deb ... 259s Unpacking liblzf1:armhf (3.6-4) ... 259s Selecting previously unselected package libpython3.13-stdlib:armhf. 259s Preparing to unpack .../061-libpython3.13-stdlib_3.13.1-2_armhf.deb ... 259s Unpacking libpython3.13-stdlib:armhf (3.13.1-2) ... 259s Selecting previously unselected package pybuild-plugin-autopkgtest. 259s Preparing to unpack .../062-pybuild-plugin-autopkgtest_6.20241217_all.deb ... 259s Unpacking pybuild-plugin-autopkgtest (6.20241217) ... 259s Selecting previously unselected package python3-packaging. 259s Preparing to unpack .../063-python3-packaging_24.2-1_all.deb ... 259s Unpacking python3-packaging (24.2-1) ... 259s Selecting previously unselected package python3-pyproject-hooks. 259s Preparing to unpack .../064-python3-pyproject-hooks_1.2.0-1_all.deb ... 259s Unpacking python3-pyproject-hooks (1.2.0-1) ... 259s Selecting previously unselected package python3-toml. 259s Preparing to unpack .../065-python3-toml_0.10.2-1_all.deb ... 259s Unpacking python3-toml (0.10.2-1) ... 259s Selecting previously unselected package python3-wheel. 259s Preparing to unpack .../066-python3-wheel_0.45.1-1_all.deb ... 259s Unpacking python3-wheel (0.45.1-1) ... 259s Selecting previously unselected package python3-build. 259s Preparing to unpack .../067-python3-build_1.2.2-1_all.deb ... 259s Unpacking python3-build (1.2.2-1) ... 259s Selecting previously unselected package python3-installer. 259s Preparing to unpack .../068-python3-installer_0.7.0+dfsg1-3_all.deb ... 259s Unpacking python3-installer (0.7.0+dfsg1-3) ... 259s Selecting previously unselected package pybuild-plugin-pyproject. 259s Preparing to unpack .../069-pybuild-plugin-pyproject_6.20241217_all.deb ... 259s Unpacking pybuild-plugin-pyproject (6.20241217) ... 259s Selecting previously unselected package python3.13. 259s Preparing to unpack .../070-python3.13_3.13.1-2_armhf.deb ... 259s Unpacking python3.13 (3.13.1-2) ... 259s Selecting previously unselected package python3-all. 259s Preparing to unpack .../071-python3-all_3.12.8-1_armhf.deb ... 259s Unpacking python3-all (3.12.8-1) ... 259s Selecting previously unselected package python3-asciitree. 259s Preparing to unpack .../072-python3-asciitree_0.3.3-4_all.deb ... 259s Unpacking python3-asciitree (0.3.3-4) ... 259s Selecting previously unselected package python3-soupsieve. 259s Preparing to unpack .../073-python3-soupsieve_2.6-1_all.deb ... 259s Unpacking python3-soupsieve (2.6-1) ... 259s Selecting previously unselected package python3-bs4. 259s Preparing to unpack .../074-python3-bs4_4.12.3-3_all.deb ... 259s Unpacking python3-bs4 (4.12.3-3) ... 259s Selecting previously unselected package python3-defusedxml. 259s Preparing to unpack .../075-python3-defusedxml_0.7.1-3_all.deb ... 259s Unpacking python3-defusedxml (0.7.1-3) ... 259s Selecting previously unselected package python3-wrapt. 259s Preparing to unpack .../076-python3-wrapt_1.15.0-4_armhf.deb ... 259s Unpacking python3-wrapt (1.15.0-4) ... 259s Selecting previously unselected package python3-deprecated. 259s Preparing to unpack .../077-python3-deprecated_1.2.15-1_all.deb ... 259s Unpacking python3-deprecated (1.2.15-1) ... 260s Selecting previously unselected package python3-roman. 260s Preparing to unpack .../078-python3-roman_4.2-1_all.deb ... 260s Unpacking python3-roman (4.2-1) ... 260s Selecting previously unselected package python3-docutils. 260s Preparing to unpack .../079-python3-docutils_0.21.2+dfsg-2_all.deb ... 260s Unpacking python3-docutils (0.21.2+dfsg-2) ... 260s Selecting previously unselected package python3-monotonic. 260s Preparing to unpack .../080-python3-monotonic_1.6-3_all.deb ... 260s Unpacking python3-monotonic (1.6-3) ... 260s Selecting previously unselected package python3-fasteners. 260s Preparing to unpack .../081-python3-fasteners_0.18-2_all.deb ... 260s Unpacking python3-fasteners (0.18-2) ... 260s Selecting previously unselected package python3-fsspec. 260s Preparing to unpack .../082-python3-fsspec_2024.10.0-1_all.deb ... 260s Unpacking python3-fsspec (2024.10.0-1) ... 260s Selecting previously unselected package python3-numpy. 260s Preparing to unpack .../083-python3-numpy_1%3a1.26.4+ds-12_armhf.deb ... 260s Unpacking python3-numpy (1:1.26.4+ds-12) ... 260s Selecting previously unselected package python3-h5py-serial. 260s Preparing to unpack .../084-python3-h5py-serial_3.11.0-8ubuntu3_armhf.deb ... 260s Unpacking python3-h5py-serial (3.11.0-8ubuntu3) ... 260s Selecting previously unselected package python3-h5py. 260s Preparing to unpack .../085-python3-h5py_3.11.0-8ubuntu3_all.deb ... 260s Unpacking python3-h5py (3.11.0-8ubuntu3) ... 260s Selecting previously unselected package python3-imagesize. 260s Preparing to unpack .../086-python3-imagesize_1.4.1-1_all.deb ... 260s Unpacking python3-imagesize (1.4.1-1) ... 260s Selecting previously unselected package python3-iniconfig. 260s Preparing to unpack .../087-python3-iniconfig_1.1.1-2_all.deb ... 260s Unpacking python3-iniconfig (1.1.1-2) ... 260s Selecting previously unselected package python3-msgpack. 260s Preparing to unpack .../088-python3-msgpack_1.0.3-3build3_armhf.deb ... 260s Unpacking python3-msgpack (1.0.3-3build3) ... 260s Selecting previously unselected package sphinx-common. 260s Preparing to unpack .../089-sphinx-common_8.1.3-3_all.deb ... 260s Unpacking sphinx-common (8.1.3-3) ... 260s Selecting previously unselected package python3-alabaster. 260s Preparing to unpack .../090-python3-alabaster_0.7.16-0.1_all.deb ... 260s Unpacking python3-alabaster (0.7.16-0.1) ... 260s Selecting previously unselected package python3-snowballstemmer. 260s Preparing to unpack .../091-python3-snowballstemmer_2.2.0-4build1_all.deb ... 260s Unpacking python3-snowballstemmer (2.2.0-4build1) ... 260s Selecting previously unselected package python3-sphinx. 260s Preparing to unpack .../092-python3-sphinx_8.1.3-3_all.deb ... 260s Unpacking python3-sphinx (8.1.3-3) ... 261s Selecting previously unselected package python3-pydata-sphinx-theme. 261s Preparing to unpack .../093-python3-pydata-sphinx-theme_0.15.4+dfsg-2_all.deb ... 261s Unpacking python3-pydata-sphinx-theme (0.15.4+dfsg-2) ... 261s Selecting previously unselected package python3-numcodecs. 261s Preparing to unpack .../094-python3-numcodecs_0.15.0+ds-1_armhf.deb ... 261s Unpacking python3-numcodecs (0.15.0+ds-1) ... 261s Selecting previously unselected package python3-tabulate. 261s Preparing to unpack .../095-python3-tabulate_0.9.0-1_all.deb ... 261s Unpacking python3-tabulate (0.9.0-1) ... 261s Selecting previously unselected package python3-numpydoc. 261s Preparing to unpack .../096-python3-numpydoc_1.8.0-1_all.deb ... 261s Unpacking python3-numpydoc (1.8.0-1) ... 261s Selecting previously unselected package python3-pluggy. 261s Preparing to unpack .../097-python3-pluggy_1.5.0-1_all.deb ... 261s Unpacking python3-pluggy (1.5.0-1) ... 261s Selecting previously unselected package python3-pytest. 261s Preparing to unpack .../098-python3-pytest_8.3.4-1_all.deb ... 261s Unpacking python3-pytest (8.3.4-1) ... 261s Selecting previously unselected package python3-pytest-doctestplus. 261s Preparing to unpack .../099-python3-pytest-doctestplus_1.3.0-1_all.deb ... 261s Unpacking python3-pytest-doctestplus (1.3.0-1) ... 261s Selecting previously unselected package python3-pytest-timeout. 261s Preparing to unpack .../100-python3-pytest-timeout_2.3.1-1_all.deb ... 261s Unpacking python3-pytest-timeout (2.3.1-1) ... 261s Selecting previously unselected package python3-setuptools-scm. 261s Preparing to unpack .../101-python3-setuptools-scm_8.1.0-1_all.deb ... 261s Unpacking python3-setuptools-scm (8.1.0-1) ... 261s Selecting previously unselected package python3-sphinx-automodapi. 261s Preparing to unpack .../102-python3-sphinx-automodapi_0.18.0-1_all.deb ... 261s Unpacking python3-sphinx-automodapi (0.18.0-1) ... 261s Selecting previously unselected package python3-sphinx-copybutton. 261s Preparing to unpack .../103-python3-sphinx-copybutton_0.5.2-2_all.deb ... 261s Unpacking python3-sphinx-copybutton (0.5.2-2) ... 261s Selecting previously unselected package python3-sphinx-design. 261s Preparing to unpack .../104-python3-sphinx-design_0.6.1-1_all.deb ... 261s Unpacking python3-sphinx-design (0.6.1-1) ... 261s Selecting previously unselected package python3-sphinx-issues. 261s Preparing to unpack .../105-python3-sphinx-issues_5.0.0-1_all.deb ... 261s Unpacking python3-sphinx-issues (5.0.0-1) ... 261s Selecting previously unselected package python3-zarr. 261s Preparing to unpack .../106-python3-zarr_2.18.4+ds-1_all.deb ... 261s Unpacking python3-zarr (2.18.4+ds-1) ... 261s Setting up dh-python (6.20241217) ... 262s Setting up python3-iniconfig (1.1.1-2) ... 262s Setting up python3-defusedxml (0.7.1-3) ... 262s Setting up libarchive-zip-perl (1.68-1) ... 262s Setting up python3-alabaster (0.7.16-0.1) ... 262s Setting up libdebhelper-perl (13.20ubuntu1) ... 262s Setting up python3-fsspec (2024.10.0-1) ... 263s Setting up linux-libc-dev:armhf (6.11.0-8.8) ... 263s Setting up python3-tabulate (0.9.0-1) ... 263s Setting up m4 (1.4.19-4build1) ... 263s Setting up libgomp1:armhf (14.2.0-13ubuntu1) ... 263s Setting up python3-wheel (0.45.1-1) ... 263s Setting up libaec0:armhf (1.1.3-1) ... 263s Setting up libsnappy1v5:armhf (1.2.1-1) ... 263s Setting up python3-monotonic (1.6-3) ... 263s Setting up libpython3.13-minimal:armhf (3.13.1-2) ... 263s Setting up python3-roman (4.2-1) ... 264s Setting up autotools-dev (20220109.1) ... 264s Setting up libblas3:armhf (3.12.0-4) ... 264s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 264s Setting up python3-packaging (24.2-1) ... 264s Setting up rpcsvc-proto (1.4.2-0ubuntu7) ... 264s Setting up python3-pyproject-hooks (1.2.0-1) ... 264s Setting up python3-snowballstemmer (2.2.0-4build1) ... 265s Setting up liblzf1:armhf (3.6-4) ... 265s Setting up libmpc3:armhf (1.3.1-1build2) ... 265s Setting up python3-wrapt (1.15.0-4) ... 265s Setting up autopoint (0.22.5-3) ... 265s Setting up python3-fasteners (0.18-2) ... 265s Setting up python3-asciitree (0.3.3-4) ... 265s Setting up python3-toml (0.10.2-1) ... 265s Setting up python3-installer (0.7.0+dfsg1-3) ... 266s Setting up libgfortran5:armhf (14.2.0-13ubuntu1) ... 266s Setting up autoconf (2.72-3) ... 266s Setting up python3-pluggy (1.5.0-1) ... 266s Setting up libubsan1:armhf (14.2.0-13ubuntu1) ... 266s Setting up dwz (0.15-1build6) ... 266s Setting up libcrypt-dev:armhf (1:4.4.36-5) ... 266s Setting up libasan8:armhf (14.2.0-13ubuntu1) ... 266s Setting up docutils-common (0.21.2+dfsg-2) ... 266s Setting up libjson-perl (4.10000-1) ... 266s Setting up libblosc1:armhf (1.21.5+ds-1build1) ... 266s Setting up debugedit (1:5.1-1) ... 266s Setting up python3.13-minimal (3.13.1-2) ... 267s Setting up python3-msgpack (1.0.3-3build3) ... 267s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 267s Setting up libgcc-14-dev:armhf (14.2.0-13ubuntu1) ... 267s Setting up libisl23:armhf (0.27-1) ... 267s Setting up python3-build (1.2.2-1) ... 267s Setting up libc-dev-bin (2.40-4ubuntu1) ... 267s Setting up libpython3.13-stdlib:armhf (3.13.1-2) ... 267s Setting up python3-soupsieve (2.6-1) ... 267s Setting up libcc1-0:armhf (14.2.0-13ubuntu1) ... 267s Setting up python3-deprecated (1.2.15-1) ... 268s Setting up libsz2:armhf (1.1.3-1) ... 268s Setting up cpp-14-arm-linux-gnueabihf (14.2.0-13ubuntu1) ... 268s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 268s Setting up python3-imagesize (1.4.1-1) ... 268s Setting up automake (1:1.16.5-1.3ubuntu1) ... 268s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 268s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... 268s Setting up liblapack3:armhf (3.12.0-4) ... 268s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 268s Setting up gettext (0.22.5-3) ... 268s Setting up python3.13 (3.13.1-2) ... 269s Setting up pybuild-plugin-pyproject (6.20241217) ... 269s Setting up python3-pytest (8.3.4-1) ... 269s Setting up gcc-14-arm-linux-gnueabihf (14.2.0-13ubuntu1) ... 269s Setting up python3-all (3.12.8-1) ... 269s Setting up python3-setuptools-scm (8.1.0-1) ... 270s Setting up python3-bs4 (4.12.3-3) ... 270s Setting up intltool-debian (0.35.0+20060710.6) ... 270s Setting up python3-numpy (1:1.26.4+ds-12) ... 274s Setting up libjs-sphinxdoc (8.1.3-3) ... 274s Setting up cpp-14 (14.2.0-13ubuntu1) ... 274s Setting up python3-pytest-doctestplus (1.3.0-1) ... 274s Setting up dh-strip-nondeterminism (1.14.0-1) ... 274s Setting up libc6-dev:armhf (2.40-4ubuntu1) ... 274s Setting up libhdf5-103-1t64:armhf (1.10.10+repack-5ubuntu1) ... 274s Setting up libstdc++-14-dev:armhf (14.2.0-13ubuntu1) ... 274s Setting up cpp-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ... 274s Setting up gcc-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ... 274s Setting up libhdf5-hl-100t64:armhf (1.10.10+repack-5ubuntu1) ... 274s Setting up g++-14-arm-linux-gnueabihf (14.2.0-13ubuntu1) ... 274s Setting up python3-pytest-timeout (2.3.1-1) ... 274s Setting up po-debconf (1.0.21+nmu1) ... 274s Setting up python3-h5py-serial (3.11.0-8ubuntu3) ... 275s Setting up gcc-14 (14.2.0-13ubuntu1) ... 275s Setting up sphinx-common (8.1.3-3) ... 275s Setting up python3-h5py (3.11.0-8ubuntu3) ... 275s Setting up cpp (4:14.1.0-2ubuntu1) ... 275s Setting up g++-14 (14.2.0-13ubuntu1) ... 275s Setting up g++-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ... 275s Setting up libtool (2.4.7-8) ... 275s Setting up gcc (4:14.1.0-2ubuntu1) ... 275s Setting up dh-autoreconf (20) ... 275s Setting up g++ (4:14.1.0-2ubuntu1) ... 275s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 275s Setting up build-essential (12.10ubuntu1) ... 275s Setting up debhelper (13.20ubuntu1) ... 275s Setting up pybuild-plugin-autopkgtest (6.20241217) ... 275s Processing triggers for sgml-base (1.31) ... 275s Setting up python3-docutils (0.21.2+dfsg-2) ... 276s Processing triggers for install-info (7.1.1-1) ... 276s Processing triggers for libc-bin (2.40-4ubuntu1) ... 276s Processing triggers for systemd (257-2ubuntu1) ... 276s Processing triggers for man-db (2.13.0-1) ... 277s Setting up python3-sphinx (8.1.3-3) ... 279s Setting up python3-sphinx-copybutton (0.5.2-2) ... 279s Setting up python3-sphinx-issues (5.0.0-1) ... 279s Setting up python3-sphinx-design (0.6.1-1) ... 279s Setting up python3-numpydoc (1.8.0-1) ... 279s Setting up python3-pydata-sphinx-theme (0.15.4+dfsg-2) ... 280s Setting up python3-sphinx-automodapi (0.18.0-1) ... 280s Setting up python3-numcodecs (0.15.0+ds-1) ... 280s Setting up python3-zarr (2.18.4+ds-1) ... 291s autopkgtest [09:10:01]: test pybuild-autopkgtest: pybuild-autopkgtest 291s autopkgtest [09:10:01]: test pybuild-autopkgtest: [----------------------- 295s pybuild-autopkgtest 295s I: pybuild base:311: cd /tmp/autopkgtest.w3RJrx/autopkgtest_tmp/build; python3.13 -m pytest -k "not test_hierarchy and not test_complex and not test_array_with_delta_filter and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853 and not test_encode_decode_array_dtype_shape_v3" --pyargs zarr 298s ============================= test session starts ============================== 298s platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 298s rootdir: /tmp/autopkgtest.w3RJrx/autopkgtest_tmp/build 298s configfile: pyproject.toml 298s plugins: typeguard-4.4.1, doctestplus-1.3.0, timeout-2.3.1 298s collected 4975 items / 717 deselected / 4258 selected 298s 298s tests/test_attrs.py .................. [ 0%] 298s tests/test_convenience.py .....ss...................ssssssss.s.......... [ 1%] 299s ..................................................ssssssssssssssssssssss [ 3%] 299s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 4%] 299s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 6%] 299s ssssssssssssss [ 6%] 300s tests/test_core.py ..................................................... [ 8%] 301s ........................................................................ [ 9%] 304s ................................................................ssssssss [ 11%] 305s sssssssssssssssssssssssssssssssssssssss................................. [ 13%] 308s ........................................................................ [ 14%] 316s ........................................................................ [ 16%] 321s .............sssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 18%] 342s sssssssssssssssssssssssssssssssssss..................................... [ 19%] 351s ........................................................................ [ 21%] 354s ........................................................................ [ 23%] 359s ........................................................................ [ 25%] 360s ........................................................................ [ 26%] 362s ........................................................................ [ 28%] 365s ........................................................................ [ 30%] 369s .........................................................FF.FFFFF..FFFFF [ 31%] 376s ...F....FFFFF......s.FF....FFF.......................................... [ 33%] 382s ..........FF.FFFFF..FFFFF...F....FFFFF......s.FF....FFFsssssssssssssssss [ 35%] 382s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 36%] 383s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 38%] 383s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 40%] 383s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 41%] 383s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 43%] 383s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 45%] 383s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 47%] 383s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 48%] 383s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 50%] 383s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 52%] 383s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 53%] 383s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 55%] 383s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss...... [ 57%] 383s [ 57%] 384s tests/test_creation.py ................................................. [ 58%] 384s ..................................ss..... [ 59%] 384s tests/test_dim_separator.py ..........................x....x [ 60%] 385s tests/test_filters.py ...... [ 60%] 397s tests/test_indexing.py ................................................. [ 61%] 397s ......xx...... [ 61%] 397s tests/test_info.py .. [ 61%] 397s tests/test_meta.py ......................... [ 62%] 398s tests/test_meta_array.py .sss.sss.sss.sss.sss.sss.sss.sss..ssssss..sssss [ 63%] 398s s..ssssss..ssssss [ 63%] 398s tests/test_n5.py ..... [ 63%] 398s tests/test_storage.py ...................s........................s..... [ 65%] 398s ...................s.................................................... [ 66%] 398s .......................ss..............s................................ [ 68%] 399s ........................................................................ [ 70%] 399s ....................ss.................................................. [ 71%] 400s .............s.......................................................... [ 73%] 400s ........................................................................ [ 75%] 401s .....ssssssssssssssssssssssss........................................... [ 76%] 401s .......ssssssssssssssssssssssssssssssssssssssssssssssss.............s... [ 78%] 404s ..............ssssssssssssssssssssssssss....... [ 79%] 404s tests/test_storage_v3.py sssssssssssssssssssssssssssssssssssssssssssssss [ 80%] 404s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 82%] 404s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 84%] 404s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 85%] 404s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 87%] 404s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 89%] 404s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 90%] 404s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 92%] 404s ssssssssssssss [ 93%] 406s tests/test_sync.py ..................................................... [ 94%] 406s ........................................................................ [ 95%] 409s ........................................................................ [ 97%] 410s ........................................................................ [ 99%] 411s ........... [ 99%] 411s tests/test_util.py .................. [100%] 411s 411s =================================== FAILURES =================================== 411s ________________ TestArrayWithFSStorePartialRead.test_array_1d _________________ 411s 411s self = 411s 411s def test_array_1d(self): 411s a = np.arange(1050) 411s z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype) 411s 411s # check properties 411s assert len(a) == len(z) 411s assert a.ndim == z.ndim 411s assert a.shape == z.shape 411s assert a.dtype == z.dtype 411s assert (100,) == z.chunks 411s assert a.nbytes == z.nbytes 411s assert 11 == z.nchunks 411s assert 0 == z.nchunks_initialized 411s assert (11,) == z.cdata_shape 411s 411s # check empty 411s b = z[:] 411s assert isinstance(b, np.ndarray) 411s assert a.shape == b.shape 411s assert a.dtype == b.dtype 411s 411s # check attributes 411s z.attrs["foo"] = "bar" 411s assert "bar" == z.attrs["foo"] 411s 411s # set data 411s z[:] = a 411s 411s # check properties 411s assert a.nbytes == z.nbytes 411s assert 11 == z.nchunks 411s assert 11 == z.nchunks_initialized 411s 411s # check slicing 411s > assert_array_equal(a, np.array(z)) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:288: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:580: in __array__ 411s return np.array(self[...], *args, **kwargs) 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x00\x01\x00\x00}\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ___________ TestArrayWithFSStorePartialRead.test_array_1d_fill_value ___________ 411s 411s self = 411s 411s def test_array_1d_fill_value(self): 411s for fill_value in -1, 0, 1, 10: 411s a = np.arange(1050) 411s f = np.empty_like(a) 411s f.fill(fill_value) 411s z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype, fill_value=fill_value) 411s z[190:310] = a[190:310] 411s 411s > assert_array_equal(f[:190], z[:190]) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:344: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x00\x01\x00\x00Q\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ___________ TestArrayWithFSStorePartialRead.test_array_1d_selections ___________ 411s 411s self = 411s 411s def test_array_1d_selections(self): 411s # light test here, full tests in test_indexing 411s 411s # setup 411s a = np.arange(1050) 411s z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype) 411s z[:] = a 411s 411s # get 411s > assert_array_equal(a[50:150], z.get_orthogonal_selection(slice(50, 150))) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:378: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:1078: in get_orthogonal_selection 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x00\x01\x00\x00\xa4\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ________________ TestArrayWithFSStorePartialRead.test_array_2d _________________ 411s 411s self = 411s 411s def test_array_2d(self): 411s a = np.arange(10000).reshape((1000, 10)) 411s z = self.create_array(shape=a.shape, chunks=(100, 2), dtype=a.dtype) 411s 411s # check properties 411s assert len(a) == len(z) 411s assert a.ndim == z.ndim 411s assert a.shape == z.shape 411s assert a.dtype == z.dtype 411s assert (100, 2) == z.chunks 411s assert 0 == z.nchunks_initialized 411s assert (10, 5) == z.cdata_shape 411s 411s # set data 411s z[:] = a 411s 411s # check properties 411s assert a.nbytes == z.nbytes 411s assert 50 == z.nchunks_initialized 411s 411s # check array-like 411s > assert_array_equal(a, np.array(z)) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:440: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:580: in __array__ 411s return np.array(self[...], *args, **kwargs) 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x04 \x03\x00\x00\x00\x01\x00\x00`\x01\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ___________ TestArrayWithFSStorePartialRead.test_array_2d_edge_case ____________ 411s 411s self = 411s 411s def test_array_2d_edge_case(self): 411s # this fails with filters - chunks extend beyond edge of array, messes with delta 411s # filter if no fill value? 411s shape = 1000, 10 411s chunks = 300, 30 411s dtype = "i8" 411s z = self.create_array(shape=shape, dtype=dtype, chunks=chunks) 411s z[:] = 0 411s expect = np.zeros(shape, dtype=dtype) 411s > actual = z[:] 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:537: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x08@\x19\x01\x00\x00\x01\x00\x00\xfe\x14\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ____________ TestArrayWithFSStorePartialRead.test_array_2d_partial _____________ 411s 411s self = 411s 411s def test_array_2d_partial(self): 411s z = self.create_array(shape=(1000, 10), chunks=(100, 2), dtype="i4", fill_value=0) 411s 411s # check partial assignment, single row 411s c = np.arange(z.shape[1]) 411s z[0, :] = c 411s with pytest.raises(ValueError): 411s # N.B., NumPy allows this, but we'll be strict for now 411s z[2:3] = c 411s with pytest.raises(ValueError): 411s # N.B., NumPy allows this, but we'll be strict for now 411s z[-1:] = c 411s z[2:3] = c[None, :] 411s z[-1:] = c[None, :] 411s > assert_array_equal(c, z[0, :]) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:556: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:796: in __getitem__ 411s result = self.get_orthogonal_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1078: in get_orthogonal_selection 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x04 \x03\x00\x00\x00\x01\x00\x00f\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _______________ TestArrayWithFSStorePartialRead.test_array_order _______________ 411s 411s self = 411s 411s def test_array_order(self): 411s # 1D 411s a = np.arange(1050) 411s for order in "C", "F": 411s z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype, order=order) 411s assert order == z.order 411s if order == "F": 411s assert z[:].flags.f_contiguous 411s else: 411s assert z[:].flags.c_contiguous 411s z[:] = a 411s > assert_array_equal(a, z[:]) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:594: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x00\x01\x00\x00}\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ________________ TestArrayWithFSStorePartialRead.test_resize_1d ________________ 411s 411s self = 411s 411s def test_resize_1d(self): 411s z = self.create_array(shape=105, chunks=10, dtype="i4", fill_value=0) 411s a = np.arange(105, dtype="i4") 411s z[:] = a 411s assert (105,) == z.shape 411s > assert (105,) == z[:].shape 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:679: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x013\x04(\x00\x00\x00(\x00\x00\x008\x00\x00\x00',), kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ________________ TestArrayWithFSStorePartialRead.test_resize_2d ________________ 411s 411s self = 411s 411s def test_resize_2d(self): 411s z = self.create_array(shape=(105, 105), chunks=(10, 10), dtype="i4", fill_value=0) 411s a = np.arange(105 * 105, dtype="i4").reshape((105, 105)) 411s z[:] = a 411s assert (105, 105) == z.shape 411s > assert (105, 105) == z[:].shape 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:714: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x00\x01\x00\x00\xbe\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ________________ TestArrayWithFSStorePartialRead.test_append_1d ________________ 411s 411s self = 411s 411s def test_append_1d(self): 411s a = np.arange(105) 411s z = self.create_array(shape=a.shape, chunks=10, dtype=a.dtype) 411s z[:] = a 411s assert a.shape == z.shape 411s assert a.dtype == z.dtype 411s assert (10,) == z.chunks 411s > assert_array_equal(a, z[:]) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:776: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x013\x04(\x00\x00\x00(\x00\x00\x008\x00\x00\x00',), kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ________________ TestArrayWithFSStorePartialRead.test_append_2d ________________ 411s 411s self = 411s 411s def test_append_2d(self): 411s a = np.arange(105 * 105, dtype="i4").reshape((105, 105)) 411s z = self.create_array(shape=a.shape, chunks=(10, 10), dtype=a.dtype) 411s z[:] = a 411s assert a.shape == z.shape 411s assert a.dtype == z.dtype 411s assert (10, 10) == z.chunks 411s > actual = z[:] 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:804: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x00\x01\x00\x00\xbe\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _____________ TestArrayWithFSStorePartialRead.test_append_2d_axis ______________ 411s 411s self = 411s 411s def test_append_2d_axis(self): 411s a = np.arange(105 * 105, dtype="i4").reshape((105, 105)) 411s z = self.create_array(shape=a.shape, chunks=(10, 10), dtype=a.dtype) 411s z[:] = a 411s assert a.shape == z.shape 411s assert a.dtype == z.dtype 411s assert (10, 10) == z.chunks 411s > assert_array_equal(a, z[:]) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:825: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x00\x01\x00\x00\xbe\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ________________ TestArrayWithFSStorePartialRead.test_np_ufuncs ________________ 411s 411s self = 411s 411s def test_np_ufuncs(self): 411s z = self.create_array(shape=(100, 100), chunks=(10, 10)) 411s a = np.arange(10000).reshape(100, 100) 411s z[:] = a 411s 411s > assert np.sum(a) == np.sum(z) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:917: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/numpy/core/fromnumeric.py:2313: in sum 411s return _wrapreduction(a, np.add, 'sum', axis, dtype, out, keepdims=keepdims, 411s /usr/lib/python3/dist-packages/numpy/core/fromnumeric.py:88: in _wrapreduction 411s return ufunc.reduce(obj, axis, dtype, out, **passkwargs) 411s /usr/lib/python3/dist-packages/zarr/core.py:580: in __array__ 411s return np.array(self[...], *args, **kwargs) 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x08 \x03\x00\x00\x00\x01\x00\x00-\x01\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ____________ TestArrayWithFSStorePartialRead.test_array_dtype_shape ____________ 411s 411s self = 411s 411s def test_array_dtype_shape(self): 411s dt = "(2, 2)f4" 411s # setup some data 411s d = np.array([((0, 1), (1, 2)), ((1, 2), (2, 3)), ((2, 3), (3, 4))], dtype=dt) 411s 411s for a in (d, d[:0]): 411s for fill_value in None, 0: 411s z = self.create_array(shape=a.shape[:-2], chunks=2, dtype=dt, fill_value=fill_value) 411s assert len(a) == len(z) 411s if fill_value is not None: 411s assert fill_value == z.fill_value 411s z[...] = a 411s > assert_array_equal(a, z[...]) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1101: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x013\x04 \x00\x00\x00 \x00\x00\x000\x00\x00\x00',), kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ____________ TestArrayWithFSStorePartialRead.test_structured_array _____________ 411s 411s self = 411s 411s def test_structured_array(self): 411s d = np.array( 411s [(b"aaa", 1, 4.2), (b"bbb", 2, 8.4), (b"ccc", 3, 12.6)], 411s dtype=[("foo", "S3"), ("bar", "i4"), ("baz", "f8")], 411s ) 411s fill_values = None, b"", (b"zzz", 42, 16.8) 411s > self.check_structured_array(d, fill_values) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1151: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1136: in check_structured_array 411s assert a[0] == z[0] 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x013\x0f\x1e\x00\x00\x00\x1e\x00\x00\x00.\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _______ TestArrayWithFSStorePartialRead.test_structured_array_subshapes ________ 411s 411s self = 411s 411s def test_structured_array_subshapes(self): 411s d = np.array( 411s [ 411s (0, ((0, 1, 2), (1, 2, 3)), b"aaa"), 411s (1, ((1, 2, 3), (2, 3, 4)), b"bbb"), 411s (2, ((2, 3, 4), (3, 4, 5)), b"ccc"), 411s ], 411s dtype=[("foo", "i8"), ("bar", "(2, 3)f4"), ("baz", "S3")], 411s ) 411s fill_values = None, b"", (0, ((0, 0, 0), (1, 1, 1)), b"zzz") 411s > self.check_structured_array(d, fill_values) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1163: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1136: in check_structured_array 411s assert a[0] == z[0] 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x013#F\x00\x00\x00F\x00\x00\x00V\x00\x00\x00',), kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _________ TestArrayWithFSStorePartialRead.test_structured_array_nested _________ 411s 411s self = 411s 411s def test_structured_array_nested(self): 411s d = np.array( 411s [ 411s (0, (0, ((0, 1), (1, 2), (2, 3)), 0), b"aaa"), 411s (1, (1, ((1, 2), (2, 3), (3, 4)), 1), b"bbb"), 411s (2, (2, ((2, 3), (3, 4), (4, 5)), 2), b"ccc"), 411s ], 411s dtype=[ 411s ("foo", "i8"), 411s ("bar", [("foo", "i4"), ("bar", "(3, 2)f4"), ("baz", "u1")]), 411s ("baz", "S3"), 411s ], 411s ) 411s fill_values = None, b"", (0, (0, ((0, 0), (1, 1), (2, 2)), 0), b"zzz") 411s > self.check_structured_array(d, fill_values) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1179: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1136: in check_structured_array 411s assert a[0] == z[0] 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x013(P\x00\x00\x00P\x00\x00\x00`\x00\x00\x00',), kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _________________ TestArrayWithFSStorePartialRead.test_dtypes __________________ 411s 411s self = 411s 411s def test_dtypes(self): 411s # integers 411s for dtype in "u1", "u2", "u4", "u8", "i1", "i2", "i4", "i8": 411s z = self.create_array(shape=10, chunks=3, dtype=dtype) 411s assert z.dtype == np.dtype(dtype) 411s a = np.arange(z.shape[0], dtype=dtype) 411s z[:] = a 411s > assert_array_equal(a, z[:]) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1188: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x013\x01\x03\x00\x00\x00\x03\x00\x00\x00\x13\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s __________________ TestArrayWithFSStorePartialRead.test_iter ___________________ 411s 411s self = 411s 411s def test_iter(self): 411s params = ( 411s ((1,), (1,)), 411s ((2,), (1,)), 411s ((1,), (2,)), 411s ((3,), (3,)), 411s ((1000,), (100,)), 411s ((100,), (1000,)), 411s ((1, 100), (1, 1)), 411s ((1, 0), (1, 1)), 411s ((0, 1), (1, 1)), 411s ((0, 1), (2, 1)), 411s ((100, 1), (3, 1)), 411s ((100, 100), (10, 10)), 411s ((10, 10, 10), (3, 3, 3)), 411s ) 411s for shape, chunks in params: 411s z = self.create_array(shape=shape, chunks=chunks, dtype=int) 411s a = np.arange(np.prod(shape)).reshape(shape) 411s z[:] = a 411s > for expect, actual in zip_longest(a, z): 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1531: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:637: in islice 411s chunk = self[j : j + chunk_size] 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x013\x04\x08\x00\x00\x00\x08\x00\x00\x00\x18\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _________________ TestArrayWithFSStorePartialRead.test_islice __________________ 411s 411s self = 411s 411s def test_islice(self): 411s params = ( 411s ((1,), (1,), 0, 1), 411s ((2,), (1,), 0, 1), 411s ((1,), (2,), 0, 1), 411s ((3,), (3,), 1, 2), 411s ((1000,), (100,), 150, 1050), 411s ((100,), (1000,), 25, 75), 411s ((1, 100), (1, 1), 0, 1), 411s ((100, 1), (3, 1), 56, 100), 411s ((100, 100), (10, 10), 13, 99), 411s ((10, 10, 10), (3, 3, 3), 2, 4), 411s ) 411s for shape, chunks, start, end in params: 411s z = self.create_array(shape=shape, chunks=chunks, dtype=int) 411s a = np.arange(np.prod(shape)).reshape(shape) 411s z[:] = a 411s end_array = min(end, a.shape[0]) 411s > for expect, actual in zip_longest(a[start:end_array], z.islice(start, end)): 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1553: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:637: in islice 411s chunk = self[j : j + chunk_size] 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x013\x04\x08\x00\x00\x00\x08\x00\x00\x00\x18\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ________________ TestArrayWithFSStorePartialRead.test_non_cont _________________ 411s 411s self = 411s 411s def test_non_cont(self): 411s z = self.create_array(shape=(500, 500, 500), chunks=(50, 50, 50), dtype=" assert z[0, :, 0].any() 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:2446: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:796: in __getitem__ 411s result = self.get_orthogonal_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1078: in get_orthogonal_selection 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x04 \xa1\x07\x00\x00\x01\x00\x00>\xb7\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _ TestArrayWithFSStorePartialRead.test_read_nitems_less_than_blocksize_from_multiple_chunks _ 411s 411s self = 411s 411s def test_read_nitems_less_than_blocksize_from_multiple_chunks(self): 411s """Tests to make sure decompression doesn't fail when `nitems` is 411s less than a compressed block size, but covers multiple blocks 411s """ 411s z = self.create_array(shape=1000000, chunks=100_000) 411s z[40_000:80_000] = 1 411s path = None if self.version == 2 else z.path 411s b = Array(z.store, path=path, read_only=True, partial_decompress=True) 411s > assert (b[40_000:80_000] == 1).all() 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:2456: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x08\x005\x0c\x00\x00\x01\x00\x00\xd3\x18\x01\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s __________ TestArrayWithFSStorePartialRead.test_read_from_all_blocks ___________ 411s 411s self = 411s 411s def test_read_from_all_blocks(self): 411s """Tests to make sure `PartialReadBuffer.read_part` doesn't fail when 411s stop isn't in the `start_points` array 411s """ 411s z = self.create_array(shape=1000000, chunks=100_000) 411s z[2:99_000] = 1 411s path = None if self.version == 2 else z.path 411s b = Array(z.store, path=path, read_only=True, partial_decompress=True) 411s > assert (b[2:99_000] == 1).all() 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:2466: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x08\x005\x0c\x00\x00\x01\x00\x00\xe7`\x01\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _____________ TestArrayWithFSStoreNestedPartialRead.test_array_1d ______________ 411s 411s self = 411s 411s def test_array_1d(self): 411s a = np.arange(1050) 411s z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype) 411s 411s # check properties 411s assert len(a) == len(z) 411s assert a.ndim == z.ndim 411s assert a.shape == z.shape 411s assert a.dtype == z.dtype 411s assert (100,) == z.chunks 411s assert a.nbytes == z.nbytes 411s assert 11 == z.nchunks 411s assert 0 == z.nchunks_initialized 411s assert (11,) == z.cdata_shape 411s 411s # check empty 411s b = z[:] 411s assert isinstance(b, np.ndarray) 411s assert a.shape == b.shape 411s assert a.dtype == b.dtype 411s 411s # check attributes 411s z.attrs["foo"] = "bar" 411s assert "bar" == z.attrs["foo"] 411s 411s # set data 411s z[:] = a 411s 411s # check properties 411s assert a.nbytes == z.nbytes 411s assert 11 == z.nchunks 411s assert 11 == z.nchunks_initialized 411s 411s # check slicing 411s > assert_array_equal(a, np.array(z)) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:288: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:580: in __array__ 411s return np.array(self[...], *args, **kwargs) 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x90\x01\x00\x00l\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ________ TestArrayWithFSStoreNestedPartialRead.test_array_1d_fill_value ________ 411s 411s self = 411s 411s def test_array_1d_fill_value(self): 411s for fill_value in -1, 0, 1, 10: 411s a = np.arange(1050) 411s f = np.empty_like(a) 411s f.fill(fill_value) 411s z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype, fill_value=fill_value) 411s z[190:310] = a[190:310] 411s 411s > assert_array_equal(f[:190], z[:190]) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:344: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x90\x01\x00\x00>\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ________ TestArrayWithFSStoreNestedPartialRead.test_array_1d_selections ________ 411s 411s self = 411s 411s def test_array_1d_selections(self): 411s # light test here, full tests in test_indexing 411s 411s # setup 411s a = np.arange(1050) 411s z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype) 411s z[:] = a 411s 411s # get 411s > assert_array_equal(a[50:150], z.get_orthogonal_selection(slice(50, 150))) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:378: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:1078: in get_orthogonal_selection 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x90\x01\x00\x00\x8d\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _____________ TestArrayWithFSStoreNestedPartialRead.test_array_2d ______________ 411s 411s self = 411s 411s def test_array_2d(self): 411s a = np.arange(10000).reshape((1000, 10)) 411s z = self.create_array(shape=a.shape, chunks=(100, 2), dtype=a.dtype) 411s 411s # check properties 411s assert len(a) == len(z) 411s assert a.ndim == z.ndim 411s assert a.shape == z.shape 411s assert a.dtype == z.dtype 411s assert (100, 2) == z.chunks 411s assert 0 == z.nchunks_initialized 411s assert (10, 5) == z.cdata_shape 411s 411s # set data 411s z[:] = a 411s 411s # check properties 411s assert a.nbytes == z.nbytes 411s assert 50 == z.nchunks_initialized 411s 411s # check array-like 411s > assert_array_equal(a, np.array(z)) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:440: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:580: in __array__ 411s return np.array(self[...], *args, **kwargs) 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x01!\x04 \x03\x00\x00 \x03\x00\x00\x1c\x01\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ________ TestArrayWithFSStoreNestedPartialRead.test_array_2d_edge_case _________ 411s 411s self = 411s 411s def test_array_2d_edge_case(self): 411s # this fails with filters - chunks extend beyond edge of array, messes with delta 411s # filter if no fill value? 411s shape = 1000, 10 411s chunks = 300, 30 411s dtype = "i8" 411s z = self.create_array(shape=shape, dtype=dtype, chunks=chunks) 411s z[:] = 0 411s expect = np.zeros(shape, dtype=dtype) 411s > actual = z[:] 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:537: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x01!\x08@\x19\x01\x00@\x19\x01\x00\xa4\x01\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _________ TestArrayWithFSStoreNestedPartialRead.test_array_2d_partial __________ 411s 411s self = 411s 411s def test_array_2d_partial(self): 411s z = self.create_array(shape=(1000, 10), chunks=(100, 2), dtype="i4", fill_value=0) 411s 411s # check partial assignment, single row 411s c = np.arange(z.shape[1]) 411s z[0, :] = c 411s with pytest.raises(ValueError): 411s # N.B., NumPy allows this, but we'll be strict for now 411s z[2:3] = c 411s with pytest.raises(ValueError): 411s # N.B., NumPy allows this, but we'll be strict for now 411s z[-1:] = c 411s z[2:3] = c[None, :] 411s z[-1:] = c[None, :] 411s > assert_array_equal(c, z[0, :]) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:556: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:796: in __getitem__ 411s result = self.get_orthogonal_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1078: in get_orthogonal_selection 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x01!\x04 \x03\x00\x00 \x03\x00\x00Z\x00\x00\x00',), kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ____________ TestArrayWithFSStoreNestedPartialRead.test_array_order ____________ 411s 411s self = 411s 411s def test_array_order(self): 411s # 1D 411s a = np.arange(1050) 411s for order in "C", "F": 411s z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype, order=order) 411s assert order == z.order 411s if order == "F": 411s assert z[:].flags.f_contiguous 411s else: 411s assert z[:].flags.c_contiguous 411s z[:] = a 411s > assert_array_equal(a, z[:]) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:594: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x90\x01\x00\x00l\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _____________ TestArrayWithFSStoreNestedPartialRead.test_resize_1d _____________ 411s 411s self = 411s 411s def test_resize_1d(self): 411s z = self.create_array(shape=105, chunks=10, dtype="i4", fill_value=0) 411s a = np.arange(105, dtype="i4") 411s z[:] = a 411s assert (105,) == z.shape 411s > assert (105,) == z[:].shape 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:679: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x013\x04(\x00\x00\x00(\x00\x00\x008\x00\x00\x00',), kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _____________ TestArrayWithFSStoreNestedPartialRead.test_resize_2d _____________ 411s 411s self = 411s 411s def test_resize_2d(self): 411s z = self.create_array(shape=(105, 105), chunks=(10, 10), dtype="i4", fill_value=0) 411s a = np.arange(105 * 105, dtype="i4").reshape((105, 105)) 411s z[:] = a 411s assert (105, 105) == z.shape 411s > assert (105, 105) == z[:].shape 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:714: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x90\x01\x00\x00\xa3\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _____________ TestArrayWithFSStoreNestedPartialRead.test_append_1d _____________ 411s 411s self = 411s 411s def test_append_1d(self): 411s a = np.arange(105) 411s z = self.create_array(shape=a.shape, chunks=10, dtype=a.dtype) 411s z[:] = a 411s assert a.shape == z.shape 411s assert a.dtype == z.dtype 411s assert (10,) == z.chunks 411s > assert_array_equal(a, z[:]) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:776: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x013\x04(\x00\x00\x00(\x00\x00\x008\x00\x00\x00',), kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _____________ TestArrayWithFSStoreNestedPartialRead.test_append_2d _____________ 411s 411s self = 411s 411s def test_append_2d(self): 411s a = np.arange(105 * 105, dtype="i4").reshape((105, 105)) 411s z = self.create_array(shape=a.shape, chunks=(10, 10), dtype=a.dtype) 411s z[:] = a 411s assert a.shape == z.shape 411s assert a.dtype == z.dtype 411s assert (10, 10) == z.chunks 411s > actual = z[:] 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:804: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x90\x01\x00\x00\xa3\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s __________ TestArrayWithFSStoreNestedPartialRead.test_append_2d_axis ___________ 411s 411s self = 411s 411s def test_append_2d_axis(self): 411s a = np.arange(105 * 105, dtype="i4").reshape((105, 105)) 411s z = self.create_array(shape=a.shape, chunks=(10, 10), dtype=a.dtype) 411s z[:] = a 411s assert a.shape == z.shape 411s assert a.dtype == z.dtype 411s assert (10, 10) == z.chunks 411s > assert_array_equal(a, z[:]) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:825: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x90\x01\x00\x00\xa3\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _____________ TestArrayWithFSStoreNestedPartialRead.test_np_ufuncs _____________ 411s 411s self = 411s 411s def test_np_ufuncs(self): 411s z = self.create_array(shape=(100, 100), chunks=(10, 10)) 411s a = np.arange(10000).reshape(100, 100) 411s z[:] = a 411s 411s > assert np.sum(a) == np.sum(z) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:917: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/numpy/core/fromnumeric.py:2313: in sum 411s return _wrapreduction(a, np.add, 'sum', axis, dtype, out, keepdims=keepdims, 411s /usr/lib/python3/dist-packages/numpy/core/fromnumeric.py:88: in _wrapreduction 411s return ufunc.reduce(obj, axis, dtype, out, **passkwargs) 411s /usr/lib/python3/dist-packages/zarr/core.py:580: in __array__ 411s return np.array(self[...], *args, **kwargs) 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x011\x08 \x03\x00\x00 \x03\x00\x00\xed\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _________ TestArrayWithFSStoreNestedPartialRead.test_array_dtype_shape _________ 411s 411s self = 411s 411s def test_array_dtype_shape(self): 411s dt = "(2, 2)f4" 411s # setup some data 411s d = np.array([((0, 1), (1, 2)), ((1, 2), (2, 3)), ((2, 3), (3, 4))], dtype=dt) 411s 411s for a in (d, d[:0]): 411s for fill_value in None, 0: 411s z = self.create_array(shape=a.shape[:-2], chunks=2, dtype=dt, fill_value=fill_value) 411s assert len(a) == len(z) 411s if fill_value is not None: 411s assert fill_value == z.fill_value 411s z[...] = a 411s > assert_array_equal(a, z[...]) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1101: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x013\x04 \x00\x00\x00 \x00\x00\x000\x00\x00\x00',), kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _________ TestArrayWithFSStoreNestedPartialRead.test_structured_array __________ 411s 411s self = 411s 411s def test_structured_array(self): 411s d = np.array( 411s [(b"aaa", 1, 4.2), (b"bbb", 2, 8.4), (b"ccc", 3, 12.6)], 411s dtype=[("foo", "S3"), ("bar", "i4"), ("baz", "f8")], 411s ) 411s fill_values = None, b"", (b"zzz", 42, 16.8) 411s > self.check_structured_array(d, fill_values) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1151: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1136: in check_structured_array 411s assert a[0] == z[0] 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x013\x0f\x1e\x00\x00\x00\x1e\x00\x00\x00.\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ____ TestArrayWithFSStoreNestedPartialRead.test_structured_array_subshapes _____ 411s 411s self = 411s 411s def test_structured_array_subshapes(self): 411s d = np.array( 411s [ 411s (0, ((0, 1, 2), (1, 2, 3)), b"aaa"), 411s (1, ((1, 2, 3), (2, 3, 4)), b"bbb"), 411s (2, ((2, 3, 4), (3, 4, 5)), b"ccc"), 411s ], 411s dtype=[("foo", "i8"), ("bar", "(2, 3)f4"), ("baz", "S3")], 411s ) 411s fill_values = None, b"", (0, ((0, 0, 0), (1, 1, 1)), b"zzz") 411s > self.check_structured_array(d, fill_values) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1163: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1136: in check_structured_array 411s assert a[0] == z[0] 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x013#F\x00\x00\x00F\x00\x00\x00V\x00\x00\x00',), kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ______ TestArrayWithFSStoreNestedPartialRead.test_structured_array_nested ______ 411s 411s self = 411s 411s def test_structured_array_nested(self): 411s d = np.array( 411s [ 411s (0, (0, ((0, 1), (1, 2), (2, 3)), 0), b"aaa"), 411s (1, (1, ((1, 2), (2, 3), (3, 4)), 1), b"bbb"), 411s (2, (2, ((2, 3), (3, 4), (4, 5)), 2), b"ccc"), 411s ], 411s dtype=[ 411s ("foo", "i8"), 411s ("bar", [("foo", "i4"), ("bar", "(3, 2)f4"), ("baz", "u1")]), 411s ("baz", "S3"), 411s ], 411s ) 411s fill_values = None, b"", (0, (0, ((0, 0), (1, 1), (2, 2)), 0), b"zzz") 411s > self.check_structured_array(d, fill_values) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1179: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1136: in check_structured_array 411s assert a[0] == z[0] 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x013(P\x00\x00\x00P\x00\x00\x00`\x00\x00\x00',), kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ______________ TestArrayWithFSStoreNestedPartialRead.test_dtypes _______________ 411s 411s self = 411s 411s def test_dtypes(self): 411s # integers 411s for dtype in "u1", "u2", "u4", "u8", "i1", "i2", "i4", "i8": 411s z = self.create_array(shape=10, chunks=3, dtype=dtype) 411s assert z.dtype == np.dtype(dtype) 411s a = np.arange(z.shape[0], dtype=dtype) 411s z[:] = a 411s > assert_array_equal(a, z[:]) 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1188: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x013\x01\x03\x00\x00\x00\x03\x00\x00\x00\x13\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _______________ TestArrayWithFSStoreNestedPartialRead.test_iter ________________ 411s 411s self = 411s 411s def test_iter(self): 411s params = ( 411s ((1,), (1,)), 411s ((2,), (1,)), 411s ((1,), (2,)), 411s ((3,), (3,)), 411s ((1000,), (100,)), 411s ((100,), (1000,)), 411s ((1, 100), (1, 1)), 411s ((1, 0), (1, 1)), 411s ((0, 1), (1, 1)), 411s ((0, 1), (2, 1)), 411s ((100, 1), (3, 1)), 411s ((100, 100), (10, 10)), 411s ((10, 10, 10), (3, 3, 3)), 411s ) 411s for shape, chunks in params: 411s z = self.create_array(shape=shape, chunks=chunks, dtype=int) 411s a = np.arange(np.prod(shape)).reshape(shape) 411s z[:] = a 411s > for expect, actual in zip_longest(a, z): 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1531: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:637: in islice 411s chunk = self[j : j + chunk_size] 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x013\x04\x08\x00\x00\x00\x08\x00\x00\x00\x18\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s ______________ TestArrayWithFSStoreNestedPartialRead.test_islice _______________ 411s 411s self = 411s 411s def test_islice(self): 411s params = ( 411s ((1,), (1,), 0, 1), 411s ((2,), (1,), 0, 1), 411s ((1,), (2,), 0, 1), 411s ((3,), (3,), 1, 2), 411s ((1000,), (100,), 150, 1050), 411s ((100,), (1000,), 25, 75), 411s ((1, 100), (1, 1), 0, 1), 411s ((100, 1), (3, 1), 56, 100), 411s ((100, 100), (10, 10), 13, 99), 411s ((10, 10, 10), (3, 3, 3), 2, 4), 411s ) 411s for shape, chunks, start, end in params: 411s z = self.create_array(shape=shape, chunks=chunks, dtype=int) 411s a = np.arange(np.prod(shape)).reshape(shape) 411s z[:] = a 411s end_array = min(end, a.shape[0]) 411s > for expect, actual in zip_longest(a[start:end_array], z.islice(start, end)): 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1553: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:637: in islice 411s chunk = self[j : j + chunk_size] 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x013\x04\x08\x00\x00\x00\x08\x00\x00\x00\x18\x00\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _____________ TestArrayWithFSStoreNestedPartialRead.test_non_cont ______________ 411s 411s self = 411s 411s def test_non_cont(self): 411s z = self.create_array(shape=(500, 500, 500), chunks=(50, 50, 50), dtype=" assert z[0, :, 0].any() 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:2503: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:796: in __getitem__ 411s result = self.get_orthogonal_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1078: in get_orthogonal_selection 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x01!\x04 \xa1\x07\x00 \xa1\x07\x00\xf8\x07\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _ TestArrayWithFSStoreNestedPartialRead.test_read_nitems_less_than_blocksize_from_multiple_chunks _ 411s 411s self = 411s 411s def test_read_nitems_less_than_blocksize_from_multiple_chunks(self): 411s """Tests to make sure decompression doesn't fail when `nitems` is 411s less than a compressed block size, but covers multiple blocks 411s """ 411s z = self.create_array(shape=1000000, chunks=100_000) 411s z[40_000:80_000] = 1 411s path = None if self.version == 2 else z.path 411s b = Array(z.store, path=path, read_only=True, partial_decompress=True) 411s > assert (b[40_000:80_000] == 1).all() 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:2513: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x01!\x08\x005\x0c\x00\x005\x0c\x00\xdc\x0c\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s _______ TestArrayWithFSStoreNestedPartialRead.test_read_from_all_blocks ________ 411s 411s self = 411s 411s def test_read_from_all_blocks(self): 411s """Tests to make sure `PartialReadBuffer.read_part` doesn't fail when 411s stop isn't in the `start_points` array 411s """ 411s z = self.create_array(shape=1000000, chunks=100_000) 411s z[2:99_000] = 1 411s path = None if self.version == 2 else z.path 411s b = Array(z.store, path=path, read_only=True, partial_decompress=True) 411s > assert (b[2:99_000] == 1).all() 411s 411s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:2523: 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 411s result = self.get_basic_selection(pure_selection, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 411s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 411s return self._get_selection(indexer=indexer, out=out, fields=fields) 411s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 411s self._chunk_getitems( 411s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 411s self._process_chunk( 411s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 411s cdata.prepare_chunk() 411s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 411s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 411s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 411s 411s wrapped_ = , instance_ = None 411s args_ = (b'\x02\x01!\x08\x005\x0c\x00\x005\x0c\x00\xe0\x0c\x00\x00',) 411s kwargs_ = {} 411s 411s @wrapt.decorator 411s def wrapper_function(wrapped_, instance_, args_, kwargs_): 411s msg = self.get_deprecated_msg(wrapped_, instance_) 411s stacklevel = _routine_stacklevel + self.extra_stacklevel 411s if self.action: 411s with warnings.catch_warnings(): 411s warnings.simplefilter(self.action, self.category) 411s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s else: 411s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 411s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 411s 411s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 411s =============================== warnings summary =============================== 411s tests/test_core.py::TestArrayWithDBMStore::test_array_order 411s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 411s 411s Traceback (most recent call last): 411s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 355, in 411s chunk_coords = tuple(p.dim_chunk_ix for p in dim_projections) 411s 411s ResourceWarning: unclosed database in 411s 411s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 411s 411s tests/test_core.py::TestArrayWithDBMStore::test_object_arrays_danger 411s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 411s 411s Traceback (most recent call last): 411s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 356, in 411s chunk_selection = tuple(p.dim_chunk_sel for p in dim_projections) 411s 411s ResourceWarning: unclosed database in 411s 411s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 411s 411s tests/test_core.py::TestArrayWithSQLiteStore::test_array_1d_fill_value 411s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 411s 411s Traceback (most recent call last): 411s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 356, in 411s chunk_selection = tuple(p.dim_chunk_sel for p in dim_projections) 411s 411s ResourceWarning: unclosed database in 411s 411s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 411s 411s tests/test_core.py::TestArrayWithSQLiteStore::test_object_arrays_vlen_text 411s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 411s 411s Traceback (most recent call last): 411s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 240, in 411s n_ellipsis = sum(1 for i in selection if i is Ellipsis) 411s 411s ResourceWarning: unclosed database in 411s 411s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 411s 411s tests/test_core.py::TestArrayWithNoCompressor::test_array_2d 411s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 411s 411s Traceback (most recent call last): 411s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 355, in 411s chunk_coords = tuple(p.dim_chunk_ix for p in dim_projections) 411s 411s ResourceWarning: unclosed database in 411s 411s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 411s 411s tests/test_filters.py::test_array_with_scaleoffset_filter 411s /usr/lib/python3/dist-packages/numcodecs/fixedscaleoffset.py:97: RuntimeWarning: invalid value encountered in cast 411s return enc.astype(self.astype, copy=False) 411s 411s tests/test_storage.py::TestZipStore::test_store_and_retrieve_ndarray 411s /usr/lib/python3.13/zipfile/__init__.py:1638: UserWarning: Duplicate name: 'foo' 411s return self._open_to_write(zinfo, force_zip64=force_zip64) 411s 411s tests/test_sync.py: 32 warnings 411s /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=2480) is multi-threaded, use of fork() may lead to deadlocks in the child. 411s self.pid = os.fork() 411s 411s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 411s ============================= slowest 10 durations ============================= 411s 9.48s call tests/test_indexing.py::test_set_orthogonal_selection_3d 411s 3.27s call tests/test_core.py::TestArrayWithSQLiteStore::test_islice 411s 3.27s call tests/test_core.py::TestArrayWithSQLiteStore::test_iter 411s 2.92s call tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d 411s 2.81s call tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d 411s 2.61s call tests/test_storage.py::test_format_compatibility 411s 2.60s call tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d_axis 411s 2.48s call tests/test_core.py::TestArrayWithSQLiteStore::test_array_order 411s 2.09s call tests/test_core.py::TestArrayWithFSStorePartialRead::test_non_cont 411s 1.58s call tests/test_core.py::TestArrayWithDBMStore::test_iter 411s =========================== short test summary info ============================ 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_1d - D... 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_1d_fill_value 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_1d_selections 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_2d - D... 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_2d_edge_case 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_2d_partial 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_order 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_resize_1d - ... 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_resize_2d - ... 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_append_1d - ... 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_append_2d - ... 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_append_2d_axis 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_np_ufuncs - ... 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_dtype_shape 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_structured_array 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_structured_array_subshapes 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_structured_array_nested 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_dtypes - Dep... 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_iter - Depre... 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_islice - Dep... 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_non_cont - D... 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_read_nitems_less_than_blocksize_from_multiple_chunks 411s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_read_from_all_blocks 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_1d 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_1d_fill_value 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_1d_selections 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_2d 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_2d_edge_case 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_2d_partial 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_order 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_resize_1d 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_resize_2d 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_append_1d 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_append_2d 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_append_2d_axis 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_np_ufuncs 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_dtype_shape 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_structured_array 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_structured_array_subshapes 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_structured_array_nested 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_dtypes 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_iter 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_islice 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_non_cont 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_read_nitems_less_than_blocksize_from_multiple_chunks 411s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_read_from_all_blocks 411s = 46 failed, 2204 passed, 2004 skipped, 717 deselected, 4 xfailed, 39 warnings in 115.58s (0:01:55) = 413s E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /tmp/autopkgtest.w3RJrx/autopkgtest_tmp/build; python3.13 -m pytest -k "not test_hierarchy and not test_complex and not test_array_with_delta_filter and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853 and not test_encode_decode_array_dtype_shape_v3" --pyargs zarr 413s I: pybuild base:311: cd /tmp/autopkgtest.w3RJrx/autopkgtest_tmp/build; python3.12 -m pytest -k "not test_hierarchy and not test_complex and not test_array_with_delta_filter and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853 and not test_encode_decode_array_dtype_shape_v3" --pyargs zarr 416s ============================= test session starts ============================== 416s platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0 416s rootdir: /tmp/autopkgtest.w3RJrx/autopkgtest_tmp/build 416s configfile: pyproject.toml 416s plugins: typeguard-4.4.1, doctestplus-1.3.0, timeout-2.3.1 416s collected 4975 items / 717 deselected / 4258 selected 416s 416s tests/test_attrs.py .................. [ 0%] 417s tests/test_convenience.py .....ss...................ssssssss.s.......... [ 1%] 417s ..................................................ssssssssssssssssssssss [ 3%] 417s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 4%] 417s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 6%] 417s ssssssssssssss [ 6%] 419s tests/test_core.py ..................................................... [ 8%] 420s ........................................................................ [ 9%] 423s ................................................................ssssssss [ 11%] 424s sssssssssssssssssssssssssssssssssssssss................................. [ 13%] 427s ........................................................................ [ 14%] 429s ........................................................................ [ 16%] 430s .............sssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 18%] 446s sssssssssssssssssssssssssssssssssss..................................... [ 19%] 454s ........................................................................ [ 21%] 457s ........................................................................ [ 23%] 461s ........................................................................ [ 25%] 463s ........................................................................ [ 26%] 464s ........................................................................ [ 28%] 467s ........................................................................ [ 30%] 471s .........................................................FF.FFFFF..FFFFF [ 31%] 479s ...F....FFFFF......s.FF....FFF.......................................... [ 33%] 486s ..........FF.FFFFF..FFFFF...F....FFFFF......s.FF....FFFsssssssssssssssss [ 35%] 486s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 36%] 486s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 38%] 486s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 40%] 486s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 41%] 486s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 43%] 486s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 45%] 486s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 47%] 486s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 48%] 486s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 50%] 487s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 52%] 487s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 53%] 487s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 55%] 487s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss...... [ 57%] 487s [ 57%] 487s tests/test_creation.py ................................................. [ 58%] 487s ..................................ss..... [ 59%] 487s tests/test_dim_separator.py ..........................x....x [ 60%] 488s tests/test_filters.py ...... [ 60%] 502s tests/test_indexing.py ................................................. [ 61%] 502s ......xx...... [ 61%] 502s tests/test_info.py .. [ 61%] 502s tests/test_meta.py ......................... [ 62%] 502s tests/test_meta_array.py .sss.sss.sss.sss.sss.sss.sss.sss..ssssss..sssss [ 63%] 503s s..ssssss..ssssss [ 63%] 503s tests/test_n5.py ..... [ 63%] 503s tests/test_storage.py ...................s........................s..... [ 65%] 503s ...................s.................................................... [ 66%] 503s .......................ss..............s................................ [ 68%] 503s ........................................................................ [ 70%] 503s ....................ss.................................................. [ 71%] 504s .............s.......................................................... [ 73%] 504s ........................................................................ [ 75%] 505s .....ssssssssssssssssssssssss........................................... [ 76%] 505s .......ssssssssssssssssssssssssssssssssssssssssssssssss.............s... [ 78%] 505s ..............ssssssssssssssssssssssssss....... [ 79%] 506s tests/test_storage_v3.py sssssssssssssssssssssssssssssssssssssssssssssss [ 80%] 506s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 82%] 506s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 84%] 506s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 85%] 506s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 87%] 506s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 89%] 506s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 90%] 506s ssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssssss [ 92%] 506s ssssssssssssss [ 93%] 506s tests/test_sync.py ..................................................... [ 94%] 507s ........................................................................ [ 95%] 510s ........................................................................ [ 97%] 512s ........................................................................ [ 99%] 512s ........... [ 99%] 512s tests/test_util.py .................. [100%] 512s 512s =================================== FAILURES =================================== 512s ________________ TestArrayWithFSStorePartialRead.test_array_1d _________________ 512s 512s self = 512s 512s def test_array_1d(self): 512s a = np.arange(1050) 512s z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype) 512s 512s # check properties 512s assert len(a) == len(z) 512s assert a.ndim == z.ndim 512s assert a.shape == z.shape 512s assert a.dtype == z.dtype 512s assert (100,) == z.chunks 512s assert a.nbytes == z.nbytes 512s assert 11 == z.nchunks 512s assert 0 == z.nchunks_initialized 512s assert (11,) == z.cdata_shape 512s 512s # check empty 512s b = z[:] 512s assert isinstance(b, np.ndarray) 512s assert a.shape == b.shape 512s assert a.dtype == b.dtype 512s 512s # check attributes 512s z.attrs["foo"] = "bar" 512s assert "bar" == z.attrs["foo"] 512s 512s # set data 512s z[:] = a 512s 512s # check properties 512s assert a.nbytes == z.nbytes 512s assert 11 == z.nchunks 512s assert 11 == z.nchunks_initialized 512s 512s # check slicing 512s > assert_array_equal(a, np.array(z)) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:288: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:580: in __array__ 512s return np.array(self[...], *args, **kwargs) 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x00\x01\x00\x00}\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ___________ TestArrayWithFSStorePartialRead.test_array_1d_fill_value ___________ 512s 512s self = 512s 512s def test_array_1d_fill_value(self): 512s for fill_value in -1, 0, 1, 10: 512s a = np.arange(1050) 512s f = np.empty_like(a) 512s f.fill(fill_value) 512s z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype, fill_value=fill_value) 512s z[190:310] = a[190:310] 512s 512s > assert_array_equal(f[:190], z[:190]) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:344: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x00\x01\x00\x00Q\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ___________ TestArrayWithFSStorePartialRead.test_array_1d_selections ___________ 512s 512s self = 512s 512s def test_array_1d_selections(self): 512s # light test here, full tests in test_indexing 512s 512s # setup 512s a = np.arange(1050) 512s z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype) 512s z[:] = a 512s 512s # get 512s > assert_array_equal(a[50:150], z.get_orthogonal_selection(slice(50, 150))) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:378: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:1078: in get_orthogonal_selection 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x00\x01\x00\x00\xa4\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ________________ TestArrayWithFSStorePartialRead.test_array_2d _________________ 512s 512s self = 512s 512s def test_array_2d(self): 512s a = np.arange(10000).reshape((1000, 10)) 512s z = self.create_array(shape=a.shape, chunks=(100, 2), dtype=a.dtype) 512s 512s # check properties 512s assert len(a) == len(z) 512s assert a.ndim == z.ndim 512s assert a.shape == z.shape 512s assert a.dtype == z.dtype 512s assert (100, 2) == z.chunks 512s assert 0 == z.nchunks_initialized 512s assert (10, 5) == z.cdata_shape 512s 512s # set data 512s z[:] = a 512s 512s # check properties 512s assert a.nbytes == z.nbytes 512s assert 50 == z.nchunks_initialized 512s 512s # check array-like 512s > assert_array_equal(a, np.array(z)) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:440: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:580: in __array__ 512s return np.array(self[...], *args, **kwargs) 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x04 \x03\x00\x00\x00\x01\x00\x00`\x01\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ___________ TestArrayWithFSStorePartialRead.test_array_2d_edge_case ____________ 512s 512s self = 512s 512s def test_array_2d_edge_case(self): 512s # this fails with filters - chunks extend beyond edge of array, messes with delta 512s # filter if no fill value? 512s shape = 1000, 10 512s chunks = 300, 30 512s dtype = "i8" 512s z = self.create_array(shape=shape, dtype=dtype, chunks=chunks) 512s z[:] = 0 512s expect = np.zeros(shape, dtype=dtype) 512s > actual = z[:] 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:537: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x08@\x19\x01\x00\x00\x01\x00\x00\xfe\x14\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ____________ TestArrayWithFSStorePartialRead.test_array_2d_partial _____________ 512s 512s self = 512s 512s def test_array_2d_partial(self): 512s z = self.create_array(shape=(1000, 10), chunks=(100, 2), dtype="i4", fill_value=0) 512s 512s # check partial assignment, single row 512s c = np.arange(z.shape[1]) 512s z[0, :] = c 512s with pytest.raises(ValueError): 512s # N.B., NumPy allows this, but we'll be strict for now 512s z[2:3] = c 512s with pytest.raises(ValueError): 512s # N.B., NumPy allows this, but we'll be strict for now 512s z[-1:] = c 512s z[2:3] = c[None, :] 512s z[-1:] = c[None, :] 512s > assert_array_equal(c, z[0, :]) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:556: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:796: in __getitem__ 512s result = self.get_orthogonal_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1078: in get_orthogonal_selection 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x04 \x03\x00\x00\x00\x01\x00\x00f\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s _______________ TestArrayWithFSStorePartialRead.test_array_order _______________ 512s 512s self = 512s 512s def test_array_order(self): 512s # 1D 512s a = np.arange(1050) 512s for order in "C", "F": 512s z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype, order=order) 512s assert order == z.order 512s if order == "F": 512s assert z[:].flags.f_contiguous 512s else: 512s assert z[:].flags.c_contiguous 512s z[:] = a 512s > assert_array_equal(a, z[:]) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:594: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x00\x01\x00\x00}\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ________________ TestArrayWithFSStorePartialRead.test_resize_1d ________________ 512s 512s self = 512s 512s def test_resize_1d(self): 512s z = self.create_array(shape=105, chunks=10, dtype="i4", fill_value=0) 512s a = np.arange(105, dtype="i4") 512s z[:] = a 512s assert (105,) == z.shape 512s > assert (105,) == z[:].shape 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:679: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x013\x04(\x00\x00\x00(\x00\x00\x008\x00\x00\x00',), kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ________________ TestArrayWithFSStorePartialRead.test_resize_2d ________________ 512s 512s self = 512s 512s def test_resize_2d(self): 512s z = self.create_array(shape=(105, 105), chunks=(10, 10), dtype="i4", fill_value=0) 512s a = np.arange(105 * 105, dtype="i4").reshape((105, 105)) 512s z[:] = a 512s assert (105, 105) == z.shape 512s > assert (105, 105) == z[:].shape 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:714: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x00\x01\x00\x00\xbe\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ________________ TestArrayWithFSStorePartialRead.test_append_1d ________________ 512s 512s self = 512s 512s def test_append_1d(self): 512s a = np.arange(105) 512s z = self.create_array(shape=a.shape, chunks=10, dtype=a.dtype) 512s z[:] = a 512s assert a.shape == z.shape 512s assert a.dtype == z.dtype 512s assert (10,) == z.chunks 512s > assert_array_equal(a, z[:]) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:776: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x013\x04(\x00\x00\x00(\x00\x00\x008\x00\x00\x00',), kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ________________ TestArrayWithFSStorePartialRead.test_append_2d ________________ 512s 512s self = 512s 512s def test_append_2d(self): 512s a = np.arange(105 * 105, dtype="i4").reshape((105, 105)) 512s z = self.create_array(shape=a.shape, chunks=(10, 10), dtype=a.dtype) 512s z[:] = a 512s assert a.shape == z.shape 512s assert a.dtype == z.dtype 512s assert (10, 10) == z.chunks 512s > actual = z[:] 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:804: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x00\x01\x00\x00\xbe\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s _____________ TestArrayWithFSStorePartialRead.test_append_2d_axis ______________ 512s 512s self = 512s 512s def test_append_2d_axis(self): 512s a = np.arange(105 * 105, dtype="i4").reshape((105, 105)) 512s z = self.create_array(shape=a.shape, chunks=(10, 10), dtype=a.dtype) 512s z[:] = a 512s assert a.shape == z.shape 512s assert a.dtype == z.dtype 512s assert (10, 10) == z.chunks 512s > assert_array_equal(a, z[:]) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:825: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x00\x01\x00\x00\xbe\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ________________ TestArrayWithFSStorePartialRead.test_np_ufuncs ________________ 512s 512s self = 512s 512s def test_np_ufuncs(self): 512s z = self.create_array(shape=(100, 100), chunks=(10, 10)) 512s a = np.arange(10000).reshape(100, 100) 512s z[:] = a 512s 512s > assert np.sum(a) == np.sum(z) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:917: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/numpy/core/fromnumeric.py:2313: in sum 512s return _wrapreduction(a, np.add, 'sum', axis, dtype, out, keepdims=keepdims, 512s /usr/lib/python3/dist-packages/numpy/core/fromnumeric.py:88: in _wrapreduction 512s return ufunc.reduce(obj, axis, dtype, out, **passkwargs) 512s /usr/lib/python3/dist-packages/zarr/core.py:580: in __array__ 512s return np.array(self[...], *args, **kwargs) 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x08 \x03\x00\x00\x00\x01\x00\x00-\x01\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ____________ TestArrayWithFSStorePartialRead.test_array_dtype_shape ____________ 512s 512s self = 512s 512s def test_array_dtype_shape(self): 512s dt = "(2, 2)f4" 512s # setup some data 512s d = np.array([((0, 1), (1, 2)), ((1, 2), (2, 3)), ((2, 3), (3, 4))], dtype=dt) 512s 512s for a in (d, d[:0]): 512s for fill_value in None, 0: 512s z = self.create_array(shape=a.shape[:-2], chunks=2, dtype=dt, fill_value=fill_value) 512s assert len(a) == len(z) 512s if fill_value is not None: 512s assert fill_value == z.fill_value 512s z[...] = a 512s > assert_array_equal(a, z[...]) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1101: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x013\x04 \x00\x00\x00 \x00\x00\x000\x00\x00\x00',), kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ____________ TestArrayWithFSStorePartialRead.test_structured_array _____________ 512s 512s self = 512s 512s def test_structured_array(self): 512s d = np.array( 512s [(b"aaa", 1, 4.2), (b"bbb", 2, 8.4), (b"ccc", 3, 12.6)], 512s dtype=[("foo", "S3"), ("bar", "i4"), ("baz", "f8")], 512s ) 512s fill_values = None, b"", (b"zzz", 42, 16.8) 512s > self.check_structured_array(d, fill_values) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1151: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1136: in check_structured_array 512s assert a[0] == z[0] 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x013\x0f\x1e\x00\x00\x00\x1e\x00\x00\x00.\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s _______ TestArrayWithFSStorePartialRead.test_structured_array_subshapes ________ 512s 512s self = 512s 512s def test_structured_array_subshapes(self): 512s d = np.array( 512s [ 512s (0, ((0, 1, 2), (1, 2, 3)), b"aaa"), 512s (1, ((1, 2, 3), (2, 3, 4)), b"bbb"), 512s (2, ((2, 3, 4), (3, 4, 5)), b"ccc"), 512s ], 512s dtype=[("foo", "i8"), ("bar", "(2, 3)f4"), ("baz", "S3")], 512s ) 512s fill_values = None, b"", (0, ((0, 0, 0), (1, 1, 1)), b"zzz") 512s > self.check_structured_array(d, fill_values) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1163: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1136: in check_structured_array 512s assert a[0] == z[0] 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x013#F\x00\x00\x00F\x00\x00\x00V\x00\x00\x00',), kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s _________ TestArrayWithFSStorePartialRead.test_structured_array_nested _________ 512s 512s self = 512s 512s def test_structured_array_nested(self): 512s d = np.array( 512s [ 512s (0, (0, ((0, 1), (1, 2), (2, 3)), 0), b"aaa"), 512s (1, (1, ((1, 2), (2, 3), (3, 4)), 1), b"bbb"), 512s (2, (2, ((2, 3), (3, 4), (4, 5)), 2), b"ccc"), 512s ], 512s dtype=[ 512s ("foo", "i8"), 512s ("bar", [("foo", "i4"), ("bar", "(3, 2)f4"), ("baz", "u1")]), 512s ("baz", "S3"), 512s ], 512s ) 512s fill_values = None, b"", (0, (0, ((0, 0), (1, 1), (2, 2)), 0), b"zzz") 512s > self.check_structured_array(d, fill_values) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1179: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1136: in check_structured_array 512s assert a[0] == z[0] 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x013(P\x00\x00\x00P\x00\x00\x00`\x00\x00\x00',), kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s _________________ TestArrayWithFSStorePartialRead.test_dtypes __________________ 512s 512s self = 512s 512s def test_dtypes(self): 512s # integers 512s for dtype in "u1", "u2", "u4", "u8", "i1", "i2", "i4", "i8": 512s z = self.create_array(shape=10, chunks=3, dtype=dtype) 512s assert z.dtype == np.dtype(dtype) 512s a = np.arange(z.shape[0], dtype=dtype) 512s z[:] = a 512s > assert_array_equal(a, z[:]) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1188: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x013\x01\x03\x00\x00\x00\x03\x00\x00\x00\x13\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s __________________ TestArrayWithFSStorePartialRead.test_iter ___________________ 512s 512s self = 512s 512s def test_iter(self): 512s params = ( 512s ((1,), (1,)), 512s ((2,), (1,)), 512s ((1,), (2,)), 512s ((3,), (3,)), 512s ((1000,), (100,)), 512s ((100,), (1000,)), 512s ((1, 100), (1, 1)), 512s ((1, 0), (1, 1)), 512s ((0, 1), (1, 1)), 512s ((0, 1), (2, 1)), 512s ((100, 1), (3, 1)), 512s ((100, 100), (10, 10)), 512s ((10, 10, 10), (3, 3, 3)), 512s ) 512s for shape, chunks in params: 512s z = self.create_array(shape=shape, chunks=chunks, dtype=int) 512s a = np.arange(np.prod(shape)).reshape(shape) 512s z[:] = a 512s > for expect, actual in zip_longest(a, z): 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1531: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:637: in islice 512s chunk = self[j : j + chunk_size] 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x013\x04\x08\x00\x00\x00\x08\x00\x00\x00\x18\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s _________________ TestArrayWithFSStorePartialRead.test_islice __________________ 512s 512s self = 512s 512s def test_islice(self): 512s params = ( 512s ((1,), (1,), 0, 1), 512s ((2,), (1,), 0, 1), 512s ((1,), (2,), 0, 1), 512s ((3,), (3,), 1, 2), 512s ((1000,), (100,), 150, 1050), 512s ((100,), (1000,), 25, 75), 512s ((1, 100), (1, 1), 0, 1), 512s ((100, 1), (3, 1), 56, 100), 512s ((100, 100), (10, 10), 13, 99), 512s ((10, 10, 10), (3, 3, 3), 2, 4), 512s ) 512s for shape, chunks, start, end in params: 512s z = self.create_array(shape=shape, chunks=chunks, dtype=int) 512s a = np.arange(np.prod(shape)).reshape(shape) 512s z[:] = a 512s end_array = min(end, a.shape[0]) 512s > for expect, actual in zip_longest(a[start:end_array], z.islice(start, end)): 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1553: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:637: in islice 512s chunk = self[j : j + chunk_size] 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x013\x04\x08\x00\x00\x00\x08\x00\x00\x00\x18\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ________________ TestArrayWithFSStorePartialRead.test_non_cont _________________ 512s 512s self = 512s 512s def test_non_cont(self): 512s z = self.create_array(shape=(500, 500, 500), chunks=(50, 50, 50), dtype=" assert z[0, :, 0].any() 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:2446: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:796: in __getitem__ 512s result = self.get_orthogonal_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1078: in get_orthogonal_selection 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x04 \xa1\x07\x00\x00\x01\x00\x00>\xb7\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s _ TestArrayWithFSStorePartialRead.test_read_nitems_less_than_blocksize_from_multiple_chunks _ 512s 512s self = 512s 512s def test_read_nitems_less_than_blocksize_from_multiple_chunks(self): 512s """Tests to make sure decompression doesn't fail when `nitems` is 512s less than a compressed block size, but covers multiple blocks 512s """ 512s z = self.create_array(shape=1000000, chunks=100_000) 512s z[40_000:80_000] = 1 512s path = None if self.version == 2 else z.path 512s b = Array(z.store, path=path, read_only=True, partial_decompress=True) 512s > assert (b[40_000:80_000] == 1).all() 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:2456: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x08\x005\x0c\x00\x00\x01\x00\x00\xd3\x18\x01\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s __________ TestArrayWithFSStorePartialRead.test_read_from_all_blocks ___________ 512s 512s self = 512s 512s def test_read_from_all_blocks(self): 512s """Tests to make sure `PartialReadBuffer.read_part` doesn't fail when 512s stop isn't in the `start_points` array 512s """ 512s z = self.create_array(shape=1000000, chunks=100_000) 512s z[2:99_000] = 1 512s path = None if self.version == 2 else z.path 512s b = Array(z.store, path=path, read_only=True, partial_decompress=True) 512s > assert (b[2:99_000] == 1).all() 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:2466: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x08\x005\x0c\x00\x00\x01\x00\x00\xe7`\x01\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s _____________ TestArrayWithFSStoreNestedPartialRead.test_array_1d ______________ 512s 512s self = 512s 512s def test_array_1d(self): 512s a = np.arange(1050) 512s z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype) 512s 512s # check properties 512s assert len(a) == len(z) 512s assert a.ndim == z.ndim 512s assert a.shape == z.shape 512s assert a.dtype == z.dtype 512s assert (100,) == z.chunks 512s assert a.nbytes == z.nbytes 512s assert 11 == z.nchunks 512s assert 0 == z.nchunks_initialized 512s assert (11,) == z.cdata_shape 512s 512s # check empty 512s b = z[:] 512s assert isinstance(b, np.ndarray) 512s assert a.shape == b.shape 512s assert a.dtype == b.dtype 512s 512s # check attributes 512s z.attrs["foo"] = "bar" 512s assert "bar" == z.attrs["foo"] 512s 512s # set data 512s z[:] = a 512s 512s # check properties 512s assert a.nbytes == z.nbytes 512s assert 11 == z.nchunks 512s assert 11 == z.nchunks_initialized 512s 512s # check slicing 512s > assert_array_equal(a, np.array(z)) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:288: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:580: in __array__ 512s return np.array(self[...], *args, **kwargs) 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x90\x01\x00\x00l\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ________ TestArrayWithFSStoreNestedPartialRead.test_array_1d_fill_value ________ 512s 512s self = 512s 512s def test_array_1d_fill_value(self): 512s for fill_value in -1, 0, 1, 10: 512s a = np.arange(1050) 512s f = np.empty_like(a) 512s f.fill(fill_value) 512s z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype, fill_value=fill_value) 512s z[190:310] = a[190:310] 512s 512s > assert_array_equal(f[:190], z[:190]) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:344: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x90\x01\x00\x00>\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ________ TestArrayWithFSStoreNestedPartialRead.test_array_1d_selections ________ 512s 512s self = 512s 512s def test_array_1d_selections(self): 512s # light test here, full tests in test_indexing 512s 512s # setup 512s a = np.arange(1050) 512s z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype) 512s z[:] = a 512s 512s # get 512s > assert_array_equal(a[50:150], z.get_orthogonal_selection(slice(50, 150))) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:378: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:1078: in get_orthogonal_selection 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x90\x01\x00\x00\x8d\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s _____________ TestArrayWithFSStoreNestedPartialRead.test_array_2d ______________ 512s 512s self = 512s 512s def test_array_2d(self): 512s a = np.arange(10000).reshape((1000, 10)) 512s z = self.create_array(shape=a.shape, chunks=(100, 2), dtype=a.dtype) 512s 512s # check properties 512s assert len(a) == len(z) 512s assert a.ndim == z.ndim 512s assert a.shape == z.shape 512s assert a.dtype == z.dtype 512s assert (100, 2) == z.chunks 512s assert 0 == z.nchunks_initialized 512s assert (10, 5) == z.cdata_shape 512s 512s # set data 512s z[:] = a 512s 512s # check properties 512s assert a.nbytes == z.nbytes 512s assert 50 == z.nchunks_initialized 512s 512s # check array-like 512s > assert_array_equal(a, np.array(z)) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:440: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:580: in __array__ 512s return np.array(self[...], *args, **kwargs) 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x01!\x04 \x03\x00\x00 \x03\x00\x00\x1c\x01\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ________ TestArrayWithFSStoreNestedPartialRead.test_array_2d_edge_case _________ 512s 512s self = 512s 512s def test_array_2d_edge_case(self): 512s # this fails with filters - chunks extend beyond edge of array, messes with delta 512s # filter if no fill value? 512s shape = 1000, 10 512s chunks = 300, 30 512s dtype = "i8" 512s z = self.create_array(shape=shape, dtype=dtype, chunks=chunks) 512s z[:] = 0 512s expect = np.zeros(shape, dtype=dtype) 512s > actual = z[:] 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:537: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x01!\x08@\x19\x01\x00@\x19\x01\x00\xa4\x01\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s _________ TestArrayWithFSStoreNestedPartialRead.test_array_2d_partial __________ 512s 512s self = 512s 512s def test_array_2d_partial(self): 512s z = self.create_array(shape=(1000, 10), chunks=(100, 2), dtype="i4", fill_value=0) 512s 512s # check partial assignment, single row 512s c = np.arange(z.shape[1]) 512s z[0, :] = c 512s with pytest.raises(ValueError): 512s # N.B., NumPy allows this, but we'll be strict for now 512s z[2:3] = c 512s with pytest.raises(ValueError): 512s # N.B., NumPy allows this, but we'll be strict for now 512s z[-1:] = c 512s z[2:3] = c[None, :] 512s z[-1:] = c[None, :] 512s > assert_array_equal(c, z[0, :]) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:556: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:796: in __getitem__ 512s result = self.get_orthogonal_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1078: in get_orthogonal_selection 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x01!\x04 \x03\x00\x00 \x03\x00\x00Z\x00\x00\x00',), kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ____________ TestArrayWithFSStoreNestedPartialRead.test_array_order ____________ 512s 512s self = 512s 512s def test_array_order(self): 512s # 1D 512s a = np.arange(1050) 512s for order in "C", "F": 512s z = self.create_array(shape=a.shape, chunks=100, dtype=a.dtype, order=order) 512s assert order == z.order 512s if order == "F": 512s assert z[:].flags.f_contiguous 512s else: 512s assert z[:].flags.c_contiguous 512s z[:] = a 512s > assert_array_equal(a, z[:]) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:594: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x90\x01\x00\x00l\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s _____________ TestArrayWithFSStoreNestedPartialRead.test_resize_1d _____________ 512s 512s self = 512s 512s def test_resize_1d(self): 512s z = self.create_array(shape=105, chunks=10, dtype="i4", fill_value=0) 512s a = np.arange(105, dtype="i4") 512s z[:] = a 512s assert (105,) == z.shape 512s > assert (105,) == z[:].shape 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:679: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x013\x04(\x00\x00\x00(\x00\x00\x008\x00\x00\x00',), kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s _____________ TestArrayWithFSStoreNestedPartialRead.test_resize_2d _____________ 512s 512s self = 512s 512s def test_resize_2d(self): 512s z = self.create_array(shape=(105, 105), chunks=(10, 10), dtype="i4", fill_value=0) 512s a = np.arange(105 * 105, dtype="i4").reshape((105, 105)) 512s z[:] = a 512s assert (105, 105) == z.shape 512s > assert (105, 105) == z[:].shape 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:714: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x90\x01\x00\x00\xa3\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s _____________ TestArrayWithFSStoreNestedPartialRead.test_append_1d _____________ 512s 512s self = 512s 512s def test_append_1d(self): 512s a = np.arange(105) 512s z = self.create_array(shape=a.shape, chunks=10, dtype=a.dtype) 512s z[:] = a 512s assert a.shape == z.shape 512s assert a.dtype == z.dtype 512s assert (10,) == z.chunks 512s > assert_array_equal(a, z[:]) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:776: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x013\x04(\x00\x00\x00(\x00\x00\x008\x00\x00\x00',), kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s _____________ TestArrayWithFSStoreNestedPartialRead.test_append_2d _____________ 512s 512s self = 512s 512s def test_append_2d(self): 512s a = np.arange(105 * 105, dtype="i4").reshape((105, 105)) 512s z = self.create_array(shape=a.shape, chunks=(10, 10), dtype=a.dtype) 512s z[:] = a 512s assert a.shape == z.shape 512s assert a.dtype == z.dtype 512s assert (10, 10) == z.chunks 512s > actual = z[:] 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:804: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x90\x01\x00\x00\xa3\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s __________ TestArrayWithFSStoreNestedPartialRead.test_append_2d_axis ___________ 512s 512s self = 512s 512s def test_append_2d_axis(self): 512s a = np.arange(105 * 105, dtype="i4").reshape((105, 105)) 512s z = self.create_array(shape=a.shape, chunks=(10, 10), dtype=a.dtype) 512s z[:] = a 512s assert a.shape == z.shape 512s assert a.dtype == z.dtype 512s assert (10, 10) == z.chunks 512s > assert_array_equal(a, z[:]) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:825: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x04\x90\x01\x00\x00\x90\x01\x00\x00\xa3\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s _____________ TestArrayWithFSStoreNestedPartialRead.test_np_ufuncs _____________ 512s 512s self = 512s 512s def test_np_ufuncs(self): 512s z = self.create_array(shape=(100, 100), chunks=(10, 10)) 512s a = np.arange(10000).reshape(100, 100) 512s z[:] = a 512s 512s > assert np.sum(a) == np.sum(z) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:917: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/numpy/core/fromnumeric.py:2313: in sum 512s return _wrapreduction(a, np.add, 'sum', axis, dtype, out, keepdims=keepdims, 512s /usr/lib/python3/dist-packages/numpy/core/fromnumeric.py:88: in _wrapreduction 512s return ufunc.reduce(obj, axis, dtype, out, **passkwargs) 512s /usr/lib/python3/dist-packages/zarr/core.py:580: in __array__ 512s return np.array(self[...], *args, **kwargs) 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x011\x08 \x03\x00\x00 \x03\x00\x00\xed\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s _________ TestArrayWithFSStoreNestedPartialRead.test_array_dtype_shape _________ 512s 512s self = 512s 512s def test_array_dtype_shape(self): 512s dt = "(2, 2)f4" 512s # setup some data 512s d = np.array([((0, 1), (1, 2)), ((1, 2), (2, 3)), ((2, 3), (3, 4))], dtype=dt) 512s 512s for a in (d, d[:0]): 512s for fill_value in None, 0: 512s z = self.create_array(shape=a.shape[:-2], chunks=2, dtype=dt, fill_value=fill_value) 512s assert len(a) == len(z) 512s if fill_value is not None: 512s assert fill_value == z.fill_value 512s z[...] = a 512s > assert_array_equal(a, z[...]) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1101: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x013\x04 \x00\x00\x00 \x00\x00\x000\x00\x00\x00',), kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s _________ TestArrayWithFSStoreNestedPartialRead.test_structured_array __________ 512s 512s self = 512s 512s def test_structured_array(self): 512s d = np.array( 512s [(b"aaa", 1, 4.2), (b"bbb", 2, 8.4), (b"ccc", 3, 12.6)], 512s dtype=[("foo", "S3"), ("bar", "i4"), ("baz", "f8")], 512s ) 512s fill_values = None, b"", (b"zzz", 42, 16.8) 512s > self.check_structured_array(d, fill_values) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1151: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1136: in check_structured_array 512s assert a[0] == z[0] 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x013\x0f\x1e\x00\x00\x00\x1e\x00\x00\x00.\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ____ TestArrayWithFSStoreNestedPartialRead.test_structured_array_subshapes _____ 512s 512s self = 512s 512s def test_structured_array_subshapes(self): 512s d = np.array( 512s [ 512s (0, ((0, 1, 2), (1, 2, 3)), b"aaa"), 512s (1, ((1, 2, 3), (2, 3, 4)), b"bbb"), 512s (2, ((2, 3, 4), (3, 4, 5)), b"ccc"), 512s ], 512s dtype=[("foo", "i8"), ("bar", "(2, 3)f4"), ("baz", "S3")], 512s ) 512s fill_values = None, b"", (0, ((0, 0, 0), (1, 1, 1)), b"zzz") 512s > self.check_structured_array(d, fill_values) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1163: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1136: in check_structured_array 512s assert a[0] == z[0] 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x013#F\x00\x00\x00F\x00\x00\x00V\x00\x00\x00',), kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ______ TestArrayWithFSStoreNestedPartialRead.test_structured_array_nested ______ 512s 512s self = 512s 512s def test_structured_array_nested(self): 512s d = np.array( 512s [ 512s (0, (0, ((0, 1), (1, 2), (2, 3)), 0), b"aaa"), 512s (1, (1, ((1, 2), (2, 3), (3, 4)), 1), b"bbb"), 512s (2, (2, ((2, 3), (3, 4), (4, 5)), 2), b"ccc"), 512s ], 512s dtype=[ 512s ("foo", "i8"), 512s ("bar", [("foo", "i4"), ("bar", "(3, 2)f4"), ("baz", "u1")]), 512s ("baz", "S3"), 512s ], 512s ) 512s fill_values = None, b"", (0, (0, ((0, 0), (1, 1), (2, 2)), 0), b"zzz") 512s > self.check_structured_array(d, fill_values) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1179: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1136: in check_structured_array 512s assert a[0] == z[0] 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x013(P\x00\x00\x00P\x00\x00\x00`\x00\x00\x00',), kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ______________ TestArrayWithFSStoreNestedPartialRead.test_dtypes _______________ 512s 512s self = 512s 512s def test_dtypes(self): 512s # integers 512s for dtype in "u1", "u2", "u4", "u8", "i1", "i2", "i4", "i8": 512s z = self.create_array(shape=10, chunks=3, dtype=dtype) 512s assert z.dtype == np.dtype(dtype) 512s a = np.arange(z.shape[0], dtype=dtype) 512s z[:] = a 512s > assert_array_equal(a, z[:]) 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1188: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x013\x01\x03\x00\x00\x00\x03\x00\x00\x00\x13\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s _______________ TestArrayWithFSStoreNestedPartialRead.test_iter ________________ 512s 512s self = 512s 512s def test_iter(self): 512s params = ( 512s ((1,), (1,)), 512s ((2,), (1,)), 512s ((1,), (2,)), 512s ((3,), (3,)), 512s ((1000,), (100,)), 512s ((100,), (1000,)), 512s ((1, 100), (1, 1)), 512s ((1, 0), (1, 1)), 512s ((0, 1), (1, 1)), 512s ((0, 1), (2, 1)), 512s ((100, 1), (3, 1)), 512s ((100, 100), (10, 10)), 512s ((10, 10, 10), (3, 3, 3)), 512s ) 512s for shape, chunks in params: 512s z = self.create_array(shape=shape, chunks=chunks, dtype=int) 512s a = np.arange(np.prod(shape)).reshape(shape) 512s z[:] = a 512s > for expect, actual in zip_longest(a, z): 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1531: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:637: in islice 512s chunk = self[j : j + chunk_size] 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x013\x04\x08\x00\x00\x00\x08\x00\x00\x00\x18\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s ______________ TestArrayWithFSStoreNestedPartialRead.test_islice _______________ 512s 512s self = 512s 512s def test_islice(self): 512s params = ( 512s ((1,), (1,), 0, 1), 512s ((2,), (1,), 0, 1), 512s ((1,), (2,), 0, 1), 512s ((3,), (3,), 1, 2), 512s ((1000,), (100,), 150, 1050), 512s ((100,), (1000,), 25, 75), 512s ((1, 100), (1, 1), 0, 1), 512s ((100, 1), (3, 1), 56, 100), 512s ((100, 100), (10, 10), 13, 99), 512s ((10, 10, 10), (3, 3, 3), 2, 4), 512s ) 512s for shape, chunks, start, end in params: 512s z = self.create_array(shape=shape, chunks=chunks, dtype=int) 512s a = np.arange(np.prod(shape)).reshape(shape) 512s z[:] = a 512s end_array = min(end, a.shape[0]) 512s > for expect, actual in zip_longest(a[start:end_array], z.islice(start, end)): 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:1553: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:637: in islice 512s chunk = self[j : j + chunk_size] 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x013\x04\x08\x00\x00\x00\x08\x00\x00\x00\x18\x00\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s _____________ TestArrayWithFSStoreNestedPartialRead.test_non_cont ______________ 512s 512s self = 512s 512s def test_non_cont(self): 512s z = self.create_array(shape=(500, 500, 500), chunks=(50, 50, 50), dtype=" assert z[0, :, 0].any() 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:2503: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:796: in __getitem__ 512s result = self.get_orthogonal_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1078: in get_orthogonal_selection 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x01!\x04 \xa1\x07\x00 \xa1\x07\x00\xf8\x07\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 512s _ TestArrayWithFSStoreNestedPartialRead.test_read_nitems_less_than_blocksize_from_multiple_chunks _ 512s 512s self = 512s 512s def test_read_nitems_less_than_blocksize_from_multiple_chunks(self): 512s """Tests to make sure decompression doesn't fail when `nitems` is 512s less than a compressed block size, but covers multiple blocks 512s """ 512s z = self.create_array(shape=1000000, chunks=100_000) 512s z[40_000:80_000] = 1 512s path = None if self.version == 2 else z.path 512s b = Array(z.store, path=path, read_only=True, partial_decompress=True) 512s > assert (b[40_000:80_000] == 1).all() 512s 512s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:2513: 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 512s result = self.get_basic_selection(pure_selection, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 512s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 512s return self._get_selection(indexer=indexer, out=out, fields=fields) 512s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 512s self._chunk_getitems( 512s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 512s self._process_chunk( 512s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 512s cdata.prepare_chunk() 512s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 512s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 512s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 512s 512s wrapped_ = , instance_ = None 512s args_ = (b'\x02\x01!\x08\x005\x0c\x00\x005\x0c\x00\xdc\x0c\x00\x00',) 512s kwargs_ = {} 512s 512s @wrapt.decorator 512s def wrapper_function(wrapped_, instance_, args_, kwargs_): 512s msg = self.get_deprecated_msg(wrapped_, instance_) 512s stacklevel = _routine_stacklevel + self.extra_stacklevel 512s if self.action: 512s with warnings.catch_warnings(): 512s warnings.simplefilter(self.action, self.category) 512s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s else: 512s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 512s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 512s 512s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 513s _______ TestArrayWithFSStoreNestedPartialRead.test_read_from_all_blocks ________ 513s 513s self = 513s 513s def test_read_from_all_blocks(self): 513s """Tests to make sure `PartialReadBuffer.read_part` doesn't fail when 513s stop isn't in the `start_points` array 513s """ 513s z = self.create_array(shape=1000000, chunks=100_000) 513s z[2:99_000] = 1 513s path = None if self.version == 2 else z.path 513s b = Array(z.store, path=path, read_only=True, partial_decompress=True) 513s > assert (b[2:99_000] == 1).all() 513s 513s /usr/lib/python3/dist-packages/zarr/tests/test_core.py:2523: 513s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 513s /usr/lib/python3/dist-packages/zarr/core.py:798: in __getitem__ 513s result = self.get_basic_selection(pure_selection, fields=fields) 513s /usr/lib/python3/dist-packages/zarr/core.py:924: in get_basic_selection 513s return self._get_basic_selection_nd(selection=selection, out=out, fields=fields) 513s /usr/lib/python3/dist-packages/zarr/core.py:966: in _get_basic_selection_nd 513s return self._get_selection(indexer=indexer, out=out, fields=fields) 513s /usr/lib/python3/dist-packages/zarr/core.py:1341: in _get_selection 513s self._chunk_getitems( 513s /usr/lib/python3/dist-packages/zarr/core.py:2186: in _chunk_getitems 513s self._process_chunk( 513s /usr/lib/python3/dist-packages/zarr/core.py:2066: in _process_chunk 513s cdata.prepare_chunk() 513s /usr/lib/python3/dist-packages/zarr/util.py:609: in prepare_chunk 513s nbytes, self.cbytes, blocksize = cbuffer_sizes(header) 513s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 513s 513s wrapped_ = , instance_ = None 513s args_ = (b'\x02\x01!\x08\x005\x0c\x00\x005\x0c\x00\xe0\x0c\x00\x00',) 513s kwargs_ = {} 513s 513s @wrapt.decorator 513s def wrapper_function(wrapped_, instance_, args_, kwargs_): 513s msg = self.get_deprecated_msg(wrapped_, instance_) 513s stacklevel = _routine_stacklevel + self.extra_stacklevel 513s if self.action: 513s with warnings.catch_warnings(): 513s warnings.simplefilter(self.action, self.category) 513s warnings.warn(msg, category=self.category, stacklevel=stacklevel) 513s else: 513s > warnings.warn(msg, category=self.category, stacklevel=stacklevel) 513s E DeprecationWarning: Call to deprecated function (or staticmethod) _cbuffer_sizes. 513s 513s /usr/lib/python3/dist-packages/deprecated/classic.py:198: DeprecationWarning 513s =============================== warnings summary =============================== 513s tests/test_filters.py::test_array_with_scaleoffset_filter 513s /usr/lib/python3/dist-packages/numcodecs/fixedscaleoffset.py:97: RuntimeWarning: invalid value encountered in cast 513s return enc.astype(self.astype, copy=False) 513s 513s tests/test_storage.py::TestZipStore::test_store_and_retrieve_ndarray 513s /usr/lib/python3.12/zipfile/__init__.py:1607: UserWarning: Duplicate name: 'foo' 513s return self._open_to_write(zinfo, force_zip64=force_zip64) 513s 513s tests/test_sync.py: 32 warnings 513s /usr/lib/python3.12/multiprocessing/popen_fork.py:66: DeprecationWarning: This process (pid=2581) is multi-threaded, use of fork() may lead to deadlocks in the child. 513s self.pid = os.fork() 513s 513s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 513s ============================= slowest 10 durations ============================= 513s 10.69s call tests/test_indexing.py::test_set_orthogonal_selection_3d 513s 2.73s call tests/test_core.py::TestArrayWithSQLiteStore::test_iter 513s 2.62s call tests/test_core.py::TestArrayWithSQLiteStore::test_islice 513s 2.59s call tests/test_core.py::TestArrayWithFSStorePartialRead::test_non_cont 513s 2.17s call tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d 513s 2.17s call tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d 513s 2.09s call tests/test_core.py::TestArrayWithSQLiteStore::test_array_order 513s 1.92s call tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d_axis 513s 1.37s call tests/test_indexing.py::test_set_orthogonal_selection_2d 513s 1.23s call tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_non_cont 513s =========================== short test summary info ============================ 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_1d - D... 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_1d_fill_value 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_1d_selections 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_2d - D... 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_2d_edge_case 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_2d_partial 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_order 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_resize_1d - ... 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_resize_2d - ... 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_append_1d - ... 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_append_2d - ... 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_append_2d_axis 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_np_ufuncs - ... 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_array_dtype_shape 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_structured_array 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_structured_array_subshapes 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_structured_array_nested 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_dtypes - Dep... 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_iter - Depre... 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_islice - Dep... 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_non_cont - D... 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_read_nitems_less_than_blocksize_from_multiple_chunks 513s FAILED tests/test_core.py::TestArrayWithFSStorePartialRead::test_read_from_all_blocks 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_1d 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_1d_fill_value 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_1d_selections 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_2d 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_2d_edge_case 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_2d_partial 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_order 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_resize_1d 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_resize_2d 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_append_1d 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_append_2d 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_append_2d_axis 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_np_ufuncs 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_array_dtype_shape 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_structured_array 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_structured_array_subshapes 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_structured_array_nested 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_dtypes 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_iter 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_islice 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_non_cont 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_read_nitems_less_than_blocksize_from_multiple_chunks 513s FAILED tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_read_from_all_blocks 513s = 46 failed, 2204 passed, 2004 skipped, 717 deselected, 4 xfailed, 34 warnings in 99.06s (0:01:39) = 514s E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /tmp/autopkgtest.w3RJrx/autopkgtest_tmp/build; python3.12 -m pytest -k "not test_hierarchy and not test_complex and not test_array_with_delta_filter and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853 and not test_encode_decode_array_dtype_shape_v3" --pyargs zarr 514s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13 514s make: *** [/tmp/TpVl2Gllp6/run:4: pybuild-autopkgtest] Error 25 514s pybuild-autopkgtest: error: /tmp/TpVl2Gllp6/run pybuild-autopkgtest returned exit code 2 515s autopkgtest [09:13:45]: test pybuild-autopkgtest: -----------------------] 519s autopkgtest [09:13:49]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 519s pybuild-autopkgtest FAIL non-zero exit status 25 524s autopkgtest [09:13:54]: @@@@@@@@@@@@@@@@@@@@ summary 524s pybuild-autopkgtest FAIL non-zero exit status 25