0s autopkgtest [09:34:49]: starting date and time: 2024-12-03 09:34:49+0000 0s autopkgtest [09:34:49]: git checkout: be626eda Fix armhf LXD image generation for plucky 0s autopkgtest [09:34:49]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8coqb1n4/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:numcodecs,src:python3-defaults --apt-upgrade zarr --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=numcodecs/0.14.1+ds-1 python3-defaults/3.12.7-1' -- lxd -r lxd-armhf-10.145.243.240 lxd-armhf-10.145.243.240:autopkgtest/ubuntu/plucky/armhf 62s autopkgtest [09:35:51]: testbed dpkg architecture: armhf 66s autopkgtest [09:35:55]: testbed apt version: 2.9.14ubuntu1 76s autopkgtest [09:36:05]: @@@@@@@@@@@@@@@@@@@@ test bed setup 81s autopkgtest [09:36:10]: testbed release detected to be: None 97s autopkgtest [09:36:26]: updating testbed package index (apt update) 101s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 101s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [213 kB] 101s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 101s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 101s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [65.3 kB] 101s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.1 kB] 101s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 101s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [781 kB] 101s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [119 kB] 101s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf Packages [928 B] 101s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [622 kB] 101s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [7468 B] 101s Get:13 http://ftpmaster.internal/ubuntu plucky/universe Sources [20.7 MB] 102s Get:14 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [298 kB] 102s Get:15 http://ftpmaster.internal/ubuntu plucky/main Sources [1381 kB] 102s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1353 kB] 102s Get:17 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [14.9 MB] 103s Get:18 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [174 kB] 106s Fetched 40.7 MB in 6s (7321 kB/s) 107s Reading package lists... 120s autopkgtest [09:36:49]: upgrading testbed (apt dist-upgrade and autopurge) 123s Reading package lists... 123s Building dependency tree... 123s Reading state information... 124s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 124s Starting 2 pkgProblemResolver with broken count: 0 124s Done 125s Entering ResolveByKeep 126s 126s The following packages will be upgraded: 126s fwupd gcc-14-base libatomic1 libfwupd3 libgcc-s1 libpython3-stdlib 126s libstdc++6 python3 python3-minimal python3-software-properties 126s software-properties-common 126s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s Need to get 6065 kB of archives. 126s After this operation, 1024 B of additional disk space will be used. 126s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB] 126s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB] 126s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB] 126s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-9ubuntu1 [7856 B] 126s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-9ubuntu1 [51.9 kB] 126s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-9ubuntu1 [713 kB] 127s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-9ubuntu1 [40.9 kB] 127s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 2.0.2-2 [5020 kB] 127s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd3 armhf 2.0.2-2 [124 kB] 127s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf software-properties-common all 0.107 [16.5 kB] 127s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf python3-software-properties all 0.107 [30.4 kB] 127s Fetched 6065 kB in 1s (6971 kB/s) 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 127s Preparing to unpack .../python3-minimal_3.12.7-1_armhf.deb ... 127s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 128s Setting up python3-minimal (3.12.7-1) ... 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 128s Preparing to unpack .../python3_3.12.7-1_armhf.deb ... 128s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 128s Preparing to unpack .../libpython3-stdlib_3.12.7-1_armhf.deb ... 128s Unpacking libpython3-stdlib:armhf (3.12.7-1) over (3.12.6-0ubuntu1) ... 128s Preparing to unpack .../libatomic1_14.2.0-9ubuntu1_armhf.deb ... 128s Unpacking libatomic1:armhf (14.2.0-9ubuntu1) over (14.2.0-8ubuntu1) ... 128s Preparing to unpack .../gcc-14-base_14.2.0-9ubuntu1_armhf.deb ... 128s Unpacking gcc-14-base:armhf (14.2.0-9ubuntu1) over (14.2.0-8ubuntu1) ... 128s Setting up gcc-14-base:armhf (14.2.0-9ubuntu1) ... 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 128s Preparing to unpack .../libstdc++6_14.2.0-9ubuntu1_armhf.deb ... 128s Unpacking libstdc++6:armhf (14.2.0-9ubuntu1) over (14.2.0-8ubuntu1) ... 128s Setting up libstdc++6:armhf (14.2.0-9ubuntu1) ... 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 128s Preparing to unpack .../libgcc-s1_14.2.0-9ubuntu1_armhf.deb ... 128s Unpacking libgcc-s1:armhf (14.2.0-9ubuntu1) over (14.2.0-8ubuntu1) ... 128s Setting up libgcc-s1:armhf (14.2.0-9ubuntu1) ... 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 128s Preparing to unpack .../fwupd_2.0.2-2_armhf.deb ... 128s Unpacking fwupd (2.0.2-2) over (2.0.2-1) ... 129s Preparing to unpack .../libfwupd3_2.0.2-2_armhf.deb ... 129s Unpacking libfwupd3:armhf (2.0.2-2) over (2.0.2-1) ... 129s Preparing to unpack .../software-properties-common_0.107_all.deb ... 129s Unpacking software-properties-common (0.107) over (0.105) ... 129s Preparing to unpack .../python3-software-properties_0.107_all.deb ... 129s Unpacking python3-software-properties (0.107) over (0.105) ... 129s Setting up libfwupd3:armhf (2.0.2-2) ... 129s Setting up libatomic1:armhf (14.2.0-9ubuntu1) ... 129s Setting up fwupd (2.0.2-2) ... 129s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 129s fwupd.service is a disabled or a static unit not running, not starting it. 130s Setting up libpython3-stdlib:armhf (3.12.7-1) ... 130s Setting up python3 (3.12.7-1) ... 130s Setting up python3-software-properties (0.107) ... 130s Setting up software-properties-common (0.107) ... 130s Processing triggers for libc-bin (2.40-1ubuntu3) ... 130s Processing triggers for man-db (2.13.0-1) ... 132s Processing triggers for dbus (1.14.10-4ubuntu5) ... 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 136s Starting pkgProblemResolver with broken count: 0 137s Starting 2 pkgProblemResolver with broken count: 0 137s Done 137s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 140s autopkgtest [09:37:09]: rebooting testbed after setup commands that affected boot 241s autopkgtest [09:38:50]: testbed running kernel: Linux 6.8.0-49-generic #49~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Nov 6 18:12:14 UTC 2 307s autopkgtest [09:39:56]: @@@@@@@@@@@@@@@@@@@@ apt-source zarr 335s Get:1 http://ftpmaster.internal/ubuntu plucky/universe zarr 2.18.3+ds-2 (dsc) [2647 B] 335s Get:2 http://ftpmaster.internal/ubuntu plucky/universe zarr 2.18.3+ds-2 (tar) [984 kB] 335s Get:3 http://ftpmaster.internal/ubuntu plucky/universe zarr 2.18.3+ds-2 (diff) [5668 B] 335s gpgv: Signature made Wed Nov 27 08:45:27 2024 UTC 335s gpgv: using RSA key 3B70F209A5FFD68903C472C5EBF48AB2578F9812 335s gpgv: issuer "antonio.valentino@tiscali.it" 335s gpgv: Can't check signature: No public key 335s dpkg-source: warning: cannot verify inline signature for ./zarr_2.18.3+ds-2.dsc: no acceptable signature found 336s autopkgtest [09:40:25]: testing package zarr version 2.18.3+ds-2 340s autopkgtest [09:40:29]: build not needed 346s autopkgtest [09:40:35]: test pybuild-autopkgtest: preparing testbed 349s Reading package lists... 350s Building dependency tree... 350s Reading state information... 350s Starting pkgProblemResolver with broken count: 0 350s Starting 2 pkgProblemResolver with broken count: 0 350s Done 351s The following NEW packages will be installed: 351s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 351s cpp-14-arm-linux-gnueabihf cpp-arm-linux-gnueabihf debhelper debugedit 351s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz g++ 351s g++-14 g++-14-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc gcc-14 351s gcc-14-arm-linux-gnueabihf gcc-arm-linux-gnueabihf gettext intltool-debian 351s libaec0 libarchive-zip-perl libasan8 libblas3 libblosc1 libc-dev-bin 351s libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl 351s libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libgomp1 351s libhdf5-103-1t64 libhdf5-hl-100t64 libisl23 libjs-jquery libjs-sphinxdoc 351s libjs-underscore libjson-perl liblapack3 liblzf1 libmpc3 351s libpython3.13-minimal libpython3.13-stdlib libsnappy1v5 libstdc++-14-dev 351s libsz2 libtool libubsan1 linux-libc-dev m4 po-debconf 351s pybuild-plugin-autopkgtest pybuild-plugin-pyproject python3-alabaster 351s python3-all python3-asciitree python3-bs4 python3-build python3-defusedxml 351s python3-docutils python3-fasteners python3-fsspec python3-h5py 351s python3-h5py-serial python3-imagesize python3-iniconfig python3-installer 351s python3-monotonic python3-msgpack python3-numcodecs python3-numpy 351s python3-numpydoc python3-packaging python3-pluggy 351s python3-pydata-sphinx-theme python3-pyproject-hooks python3-pytest 351s python3-pytest-doctestplus python3-pytest-timeout python3-roman 351s python3-setuptools-scm python3-snowballstemmer python3-soupsieve 351s python3-sphinx python3-sphinx-automodapi python3-sphinx-copybutton 351s python3-sphinx-design python3-sphinx-issues python3-tabulate python3-toml 351s python3-wheel python3-zarr python3.13 python3.13-minimal rpcsvc-proto 351s sphinx-common 351s 0 upgraded, 105 newly installed, 0 to remove and 0 not upgraded. 351s Need to get 74.9 MB of archives. 351s After this operation, 256 MB of additional disk space will be used. 351s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-minimal armhf 3.13.0-2 [866 kB] 352s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-minimal armhf 3.13.0-2 [1854 kB] 352s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf m4 armhf 1.4.19-4build1 [235 kB] 352s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf autoconf all 2.72-3 [382 kB] 352s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf autotools-dev all 20220109.1 [44.9 kB] 352s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf automake all 1:1.16.5-1.3ubuntu1 [558 kB] 352s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf autopoint all 0.22.5-2 [616 kB] 352s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libc-dev-bin armhf 2.40-1ubuntu3 [19.2 kB] 352s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf linux-libc-dev armhf 6.11.0-8.8 [1628 kB] 353s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libcrypt-dev armhf 1:4.4.36-5 [119 kB] 353s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB] 353s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libc6-dev armhf 2.40-1ubuntu3 [1370 kB] 353s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libisl23 armhf 0.27-1 [546 kB] 353s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libmpc3 armhf 1.3.1-1build2 [47.1 kB] 353s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14-arm-linux-gnueabihf armhf 14.2.0-9ubuntu1 [9312 kB] 353s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14 armhf 14.2.0-9ubuntu1 [1036 B] 353s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-arm-linux-gnueabihf armhf 4:14.1.0-2ubuntu1 [5464 B] 353s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf cpp armhf 4:14.1.0-2ubuntu1 [22.4 kB] 353s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libcc1-0 armhf 14.2.0-9ubuntu1 [43.3 kB] 353s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-9ubuntu1 [125 kB] 353s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libasan8 armhf 14.2.0-9ubuntu1 [2964 kB] 354s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libubsan1 armhf 14.2.0-9ubuntu1 [1177 kB] 354s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-14-dev armhf 14.2.0-9ubuntu1 [874 kB] 354s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-arm-linux-gnueabihf armhf 14.2.0-9ubuntu1 [18.1 MB] 355s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14 armhf 14.2.0-9ubuntu1 [500 kB] 355s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-arm-linux-gnueabihf armhf 4:14.1.0-2ubuntu1 [1222 B] 355s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf gcc armhf 4:14.1.0-2ubuntu1 [5002 B] 355s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++-14-dev armhf 14.2.0-9ubuntu1 [2556 kB] 355s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14-arm-linux-gnueabihf armhf 14.2.0-9ubuntu1 [10.6 MB] 355s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14 armhf 14.2.0-9ubuntu1 [20.1 kB] 355s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf g++-arm-linux-gnueabihf armhf 4:14.1.0-2ubuntu1 [968 B] 355s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf g++ armhf 4:14.1.0-2ubuntu1 [1084 B] 355s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf build-essential armhf 12.10ubuntu1 [4928 B] 355s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 355s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libtool all 2.4.7-8 [166 kB] 355s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf dh-autoreconf all 20 [16.1 kB] 355s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] 355s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 355s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf dh-strip-nondeterminism all 1.14.0-1 [5058 B] 355s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf debugedit armhf 1:5.1-1 [46.5 kB] 355s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf dwz armhf 0.15-1build6 [116 kB] 355s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf gettext armhf 0.22.5-2 [995 kB] 355s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf intltool-debian all 0.35.0+20060710.6 [23.2 kB] 355s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf po-debconf all 1.0.21+nmu1 [233 kB] 355s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf debhelper all 13.20ubuntu1 [893 kB] 355s Get:46 http://ftpmaster.internal/ubuntu plucky/universe armhf dh-python all 6.20241024 [112 kB] 355s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf docutils-common all 0.21.2+dfsg-2 [131 kB] 355s Get:48 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 355s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-4 [126 kB] 355s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf libsnappy1v5 armhf 1.2.1-1 [28.4 kB] 355s Get:51 http://ftpmaster.internal/ubuntu plucky/universe armhf libblosc1 armhf 1.21.5+ds-1build1 [23.7 kB] 355s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-9ubuntu1 [312 kB] 355s Get:53 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 355s Get:54 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-4ubuntu3 [1327 kB] 355s Get:55 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-4ubuntu3 [55.9 kB] 355s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 355s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 355s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-sphinxdoc all 7.4.7-4 [158 kB] 355s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-perl all 4.10000-1 [81.9 kB] 355s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-4 [2086 kB] 356s Get:61 http://ftpmaster.internal/ubuntu plucky/universe armhf liblzf1 armhf 3.6-4 [6554 B] 356s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-stdlib armhf 3.13.0-2 [1972 kB] 356s Get:63 http://ftpmaster.internal/ubuntu plucky/universe armhf pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 356s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.2-1 [51.5 kB] 356s Get:65 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 356s Get:66 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-toml all 0.10.2-1 [16.5 kB] 356s Get:67 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-wheel all 0.45.1-1 [57.7 kB] 356s Get:68 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-build all 1.2.2-1 [31.0 kB] 356s Get:69 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 356s Get:70 http://ftpmaster.internal/ubuntu plucky/universe armhf pybuild-plugin-pyproject all 6.20241024 [1728 B] 356s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13 armhf 3.13.0-2 [719 kB] 356s Get:72 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-all armhf 3.12.7-1 [890 B] 356s Get:73 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-asciitree all 0.3.3-4 [5644 B] 356s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf python3-soupsieve all 2.6-1 [33.0 kB] 356s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf python3-bs4 all 4.12.3-3 [109 kB] 356s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf python3-defusedxml all 0.7.1-2 [42.0 kB] 356s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf python3-roman all 4.2-1 [10.0 kB] 356s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf python3-docutils all 0.21.2+dfsg-2 [409 kB] 356s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf python3-monotonic all 1.6-2 [5732 B] 356s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf python3-fasteners all 0.18-2 [12.5 kB] 356s Get:81 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fsspec all 2024.9.0-1 [207 kB] 356s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11ubuntu1 [3975 kB] 356s Get:83 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-h5py-serial armhf 3.11.0-5ubuntu1 [1061 kB] 356s Get:84 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-h5py all 3.11.0-5ubuntu1 [7974 B] 356s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf python3-imagesize all 1.4.1-1 [6844 B] 356s Get:86 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 356s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf python3-msgpack armhf 1.0.3-3build3 [106 kB] 356s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf sphinx-common all 7.4.7-4 [775 kB] 356s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf python3-alabaster all 0.7.16-0.1 [18.5 kB] 356s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 356s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf python3-sphinx all 7.4.7-4 [593 kB] 356s Get:92 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pydata-sphinx-theme all 0.15.4+dfsg-2 [41.5 kB] 356s Get:93 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-numcodecs armhf 0.14.1+ds-1 [480 kB] 356s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tabulate all 0.9.0-1 [45.3 kB] 356s Get:95 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-numpydoc all 1.8.0-1 [52.4 kB] 356s Get:96 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 356s Get:97 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest all 8.3.3-1 [251 kB] 356s Get:98 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest-doctestplus all 1.3.0-1 [23.7 kB] 356s Get:99 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest-timeout all 2.3.1-1 [22.1 kB] 356s Get:100 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-setuptools-scm all 8.1.0-1 [32.2 kB] 356s Get:101 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sphinx-automodapi all 0.18.0-1 [37.6 kB] 356s Get:102 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sphinx-copybutton all 0.5.2-2 [16.6 kB] 357s Get:103 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sphinx-design all 0.6.1-1 [894 kB] 357s Get:104 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sphinx-issues all 5.0.0-1 [10.2 kB] 357s Get:105 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-zarr all 2.18.3+ds-2 [409 kB] 358s Fetched 74.9 MB in 6s (12.5 MB/s) 358s Selecting previously unselected package libpython3.13-minimal:armhf. 358s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 358s Preparing to unpack .../000-libpython3.13-minimal_3.13.0-2_armhf.deb ... 358s Unpacking libpython3.13-minimal:armhf (3.13.0-2) ... 358s Selecting previously unselected package python3.13-minimal. 358s Preparing to unpack .../001-python3.13-minimal_3.13.0-2_armhf.deb ... 358s Unpacking python3.13-minimal (3.13.0-2) ... 358s Selecting previously unselected package m4. 358s Preparing to unpack .../002-m4_1.4.19-4build1_armhf.deb ... 358s Unpacking m4 (1.4.19-4build1) ... 358s Selecting previously unselected package autoconf. 358s Preparing to unpack .../003-autoconf_2.72-3_all.deb ... 358s Unpacking autoconf (2.72-3) ... 358s Selecting previously unselected package autotools-dev. 358s Preparing to unpack .../004-autotools-dev_20220109.1_all.deb ... 358s Unpacking autotools-dev (20220109.1) ... 358s Selecting previously unselected package automake. 358s Preparing to unpack .../005-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 358s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 358s Selecting previously unselected package autopoint. 358s Preparing to unpack .../006-autopoint_0.22.5-2_all.deb ... 358s Unpacking autopoint (0.22.5-2) ... 358s Selecting previously unselected package libc-dev-bin. 358s Preparing to unpack .../007-libc-dev-bin_2.40-1ubuntu3_armhf.deb ... 358s Unpacking libc-dev-bin (2.40-1ubuntu3) ... 358s Selecting previously unselected package linux-libc-dev:armhf. 358s Preparing to unpack .../008-linux-libc-dev_6.11.0-8.8_armhf.deb ... 358s Unpacking linux-libc-dev:armhf (6.11.0-8.8) ... 358s Selecting previously unselected package libcrypt-dev:armhf. 358s Preparing to unpack .../009-libcrypt-dev_1%3a4.4.36-5_armhf.deb ... 358s Unpacking libcrypt-dev:armhf (1:4.4.36-5) ... 358s Selecting previously unselected package rpcsvc-proto. 358s Preparing to unpack .../010-rpcsvc-proto_1.4.2-0ubuntu7_armhf.deb ... 358s Unpacking rpcsvc-proto (1.4.2-0ubuntu7) ... 358s Selecting previously unselected package libc6-dev:armhf. 358s Preparing to unpack .../011-libc6-dev_2.40-1ubuntu3_armhf.deb ... 358s Unpacking libc6-dev:armhf (2.40-1ubuntu3) ... 359s Selecting previously unselected package libisl23:armhf. 359s Preparing to unpack .../012-libisl23_0.27-1_armhf.deb ... 359s Unpacking libisl23:armhf (0.27-1) ... 359s Selecting previously unselected package libmpc3:armhf. 359s Preparing to unpack .../013-libmpc3_1.3.1-1build2_armhf.deb ... 359s Unpacking libmpc3:armhf (1.3.1-1build2) ... 359s Selecting previously unselected package cpp-14-arm-linux-gnueabihf. 359s Preparing to unpack .../014-cpp-14-arm-linux-gnueabihf_14.2.0-9ubuntu1_armhf.deb ... 359s Unpacking cpp-14-arm-linux-gnueabihf (14.2.0-9ubuntu1) ... 359s Selecting previously unselected package cpp-14. 359s Preparing to unpack .../015-cpp-14_14.2.0-9ubuntu1_armhf.deb ... 359s Unpacking cpp-14 (14.2.0-9ubuntu1) ... 359s Selecting previously unselected package cpp-arm-linux-gnueabihf. 359s Preparing to unpack .../016-cpp-arm-linux-gnueabihf_4%3a14.1.0-2ubuntu1_armhf.deb ... 359s Unpacking cpp-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ... 359s Selecting previously unselected package cpp. 359s Preparing to unpack .../017-cpp_4%3a14.1.0-2ubuntu1_armhf.deb ... 359s Unpacking cpp (4:14.1.0-2ubuntu1) ... 359s Selecting previously unselected package libcc1-0:armhf. 359s Preparing to unpack .../018-libcc1-0_14.2.0-9ubuntu1_armhf.deb ... 359s Unpacking libcc1-0:armhf (14.2.0-9ubuntu1) ... 359s Selecting previously unselected package libgomp1:armhf. 359s Preparing to unpack .../019-libgomp1_14.2.0-9ubuntu1_armhf.deb ... 359s Unpacking libgomp1:armhf (14.2.0-9ubuntu1) ... 359s Selecting previously unselected package libasan8:armhf. 359s Preparing to unpack .../020-libasan8_14.2.0-9ubuntu1_armhf.deb ... 359s Unpacking libasan8:armhf (14.2.0-9ubuntu1) ... 359s Selecting previously unselected package libubsan1:armhf. 359s Preparing to unpack .../021-libubsan1_14.2.0-9ubuntu1_armhf.deb ... 359s Unpacking libubsan1:armhf (14.2.0-9ubuntu1) ... 359s Selecting previously unselected package libgcc-14-dev:armhf. 359s Preparing to unpack .../022-libgcc-14-dev_14.2.0-9ubuntu1_armhf.deb ... 359s Unpacking libgcc-14-dev:armhf (14.2.0-9ubuntu1) ... 360s Selecting previously unselected package gcc-14-arm-linux-gnueabihf. 360s Preparing to unpack .../023-gcc-14-arm-linux-gnueabihf_14.2.0-9ubuntu1_armhf.deb ... 360s Unpacking gcc-14-arm-linux-gnueabihf (14.2.0-9ubuntu1) ... 360s Selecting previously unselected package gcc-14. 360s Preparing to unpack .../024-gcc-14_14.2.0-9ubuntu1_armhf.deb ... 360s Unpacking gcc-14 (14.2.0-9ubuntu1) ... 360s Selecting previously unselected package gcc-arm-linux-gnueabihf. 360s Preparing to unpack .../025-gcc-arm-linux-gnueabihf_4%3a14.1.0-2ubuntu1_armhf.deb ... 360s Unpacking gcc-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ... 360s Selecting previously unselected package gcc. 360s Preparing to unpack .../026-gcc_4%3a14.1.0-2ubuntu1_armhf.deb ... 360s Unpacking gcc (4:14.1.0-2ubuntu1) ... 360s Selecting previously unselected package libstdc++-14-dev:armhf. 360s Preparing to unpack .../027-libstdc++-14-dev_14.2.0-9ubuntu1_armhf.deb ... 360s Unpacking libstdc++-14-dev:armhf (14.2.0-9ubuntu1) ... 360s Selecting previously unselected package g++-14-arm-linux-gnueabihf. 360s Preparing to unpack .../028-g++-14-arm-linux-gnueabihf_14.2.0-9ubuntu1_armhf.deb ... 360s Unpacking g++-14-arm-linux-gnueabihf (14.2.0-9ubuntu1) ... 361s Selecting previously unselected package g++-14. 361s Preparing to unpack .../029-g++-14_14.2.0-9ubuntu1_armhf.deb ... 361s Unpacking g++-14 (14.2.0-9ubuntu1) ... 361s Selecting previously unselected package g++-arm-linux-gnueabihf. 361s Preparing to unpack .../030-g++-arm-linux-gnueabihf_4%3a14.1.0-2ubuntu1_armhf.deb ... 361s Unpacking g++-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ... 361s Selecting previously unselected package g++. 361s Preparing to unpack .../031-g++_4%3a14.1.0-2ubuntu1_armhf.deb ... 361s Unpacking g++ (4:14.1.0-2ubuntu1) ... 361s Selecting previously unselected package build-essential. 361s Preparing to unpack .../032-build-essential_12.10ubuntu1_armhf.deb ... 361s Unpacking build-essential (12.10ubuntu1) ... 361s Selecting previously unselected package libdebhelper-perl. 361s Preparing to unpack .../033-libdebhelper-perl_13.20ubuntu1_all.deb ... 361s Unpacking libdebhelper-perl (13.20ubuntu1) ... 361s Selecting previously unselected package libtool. 361s Preparing to unpack .../034-libtool_2.4.7-8_all.deb ... 361s Unpacking libtool (2.4.7-8) ... 361s Selecting previously unselected package dh-autoreconf. 361s Preparing to unpack .../035-dh-autoreconf_20_all.deb ... 361s Unpacking dh-autoreconf (20) ... 361s Selecting previously unselected package libarchive-zip-perl. 361s Preparing to unpack .../036-libarchive-zip-perl_1.68-1_all.deb ... 361s Unpacking libarchive-zip-perl (1.68-1) ... 361s Selecting previously unselected package libfile-stripnondeterminism-perl. 361s Preparing to unpack .../037-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 361s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 361s Selecting previously unselected package dh-strip-nondeterminism. 361s Preparing to unpack .../038-dh-strip-nondeterminism_1.14.0-1_all.deb ... 361s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 361s Selecting previously unselected package debugedit. 361s Preparing to unpack .../039-debugedit_1%3a5.1-1_armhf.deb ... 361s Unpacking debugedit (1:5.1-1) ... 361s Selecting previously unselected package dwz. 361s Preparing to unpack .../040-dwz_0.15-1build6_armhf.deb ... 361s Unpacking dwz (0.15-1build6) ... 361s Selecting previously unselected package gettext. 361s Preparing to unpack .../041-gettext_0.22.5-2_armhf.deb ... 361s Unpacking gettext (0.22.5-2) ... 361s Selecting previously unselected package intltool-debian. 361s Preparing to unpack .../042-intltool-debian_0.35.0+20060710.6_all.deb ... 361s Unpacking intltool-debian (0.35.0+20060710.6) ... 361s Selecting previously unselected package po-debconf. 361s Preparing to unpack .../043-po-debconf_1.0.21+nmu1_all.deb ... 361s Unpacking po-debconf (1.0.21+nmu1) ... 361s Selecting previously unselected package debhelper. 361s Preparing to unpack .../044-debhelper_13.20ubuntu1_all.deb ... 361s Unpacking debhelper (13.20ubuntu1) ... 361s Selecting previously unselected package dh-python. 361s Preparing to unpack .../045-dh-python_6.20241024_all.deb ... 361s Unpacking dh-python (6.20241024) ... 361s Selecting previously unselected package docutils-common. 361s Preparing to unpack .../046-docutils-common_0.21.2+dfsg-2_all.deb ... 361s Unpacking docutils-common (0.21.2+dfsg-2) ... 362s Selecting previously unselected package libaec0:armhf. 362s Preparing to unpack .../047-libaec0_1.1.3-1_armhf.deb ... 362s Unpacking libaec0:armhf (1.1.3-1) ... 362s Selecting previously unselected package libblas3:armhf. 362s Preparing to unpack .../048-libblas3_3.12.0-4_armhf.deb ... 362s Unpacking libblas3:armhf (3.12.0-4) ... 362s Selecting previously unselected package libsnappy1v5:armhf. 362s Preparing to unpack .../049-libsnappy1v5_1.2.1-1_armhf.deb ... 362s Unpacking libsnappy1v5:armhf (1.2.1-1) ... 362s Selecting previously unselected package libblosc1:armhf. 362s Preparing to unpack .../050-libblosc1_1.21.5+ds-1build1_armhf.deb ... 362s Unpacking libblosc1:armhf (1.21.5+ds-1build1) ... 362s Selecting previously unselected package libgfortran5:armhf. 362s Preparing to unpack .../051-libgfortran5_14.2.0-9ubuntu1_armhf.deb ... 362s Unpacking libgfortran5:armhf (14.2.0-9ubuntu1) ... 362s Selecting previously unselected package libsz2:armhf. 362s Preparing to unpack .../052-libsz2_1.1.3-1_armhf.deb ... 362s Unpacking libsz2:armhf (1.1.3-1) ... 362s Selecting previously unselected package libhdf5-103-1t64:armhf. 362s Preparing to unpack .../053-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_armhf.deb ... 362s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 362s Selecting previously unselected package libhdf5-hl-100t64:armhf. 362s Preparing to unpack .../054-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_armhf.deb ... 362s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 362s Selecting previously unselected package libjs-jquery. 362s Preparing to unpack .../055-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 362s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 362s Selecting previously unselected package libjs-underscore. 362s Preparing to unpack .../056-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 362s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 362s Selecting previously unselected package libjs-sphinxdoc. 362s Preparing to unpack .../057-libjs-sphinxdoc_7.4.7-4_all.deb ... 362s Unpacking libjs-sphinxdoc (7.4.7-4) ... 362s Selecting previously unselected package libjson-perl. 362s Preparing to unpack .../058-libjson-perl_4.10000-1_all.deb ... 362s Unpacking libjson-perl (4.10000-1) ... 362s Selecting previously unselected package liblapack3:armhf. 362s Preparing to unpack .../059-liblapack3_3.12.0-4_armhf.deb ... 362s Unpacking liblapack3:armhf (3.12.0-4) ... 362s Selecting previously unselected package liblzf1:armhf. 362s Preparing to unpack .../060-liblzf1_3.6-4_armhf.deb ... 362s Unpacking liblzf1:armhf (3.6-4) ... 362s Selecting previously unselected package libpython3.13-stdlib:armhf. 362s Preparing to unpack .../061-libpython3.13-stdlib_3.13.0-2_armhf.deb ... 362s Unpacking libpython3.13-stdlib:armhf (3.13.0-2) ... 362s Selecting previously unselected package pybuild-plugin-autopkgtest. 362s Preparing to unpack .../062-pybuild-plugin-autopkgtest_6.20241024_all.deb ... 362s Unpacking pybuild-plugin-autopkgtest (6.20241024) ... 362s Selecting previously unselected package python3-packaging. 362s Preparing to unpack .../063-python3-packaging_24.2-1_all.deb ... 362s Unpacking python3-packaging (24.2-1) ... 362s Selecting previously unselected package python3-pyproject-hooks. 362s Preparing to unpack .../064-python3-pyproject-hooks_1.2.0-1_all.deb ... 362s Unpacking python3-pyproject-hooks (1.2.0-1) ... 362s Selecting previously unselected package python3-toml. 362s Preparing to unpack .../065-python3-toml_0.10.2-1_all.deb ... 362s Unpacking python3-toml (0.10.2-1) ... 362s Selecting previously unselected package python3-wheel. 362s Preparing to unpack .../066-python3-wheel_0.45.1-1_all.deb ... 362s Unpacking python3-wheel (0.45.1-1) ... 362s Selecting previously unselected package python3-build. 362s Preparing to unpack .../067-python3-build_1.2.2-1_all.deb ... 362s Unpacking python3-build (1.2.2-1) ... 363s Selecting previously unselected package python3-installer. 363s Preparing to unpack .../068-python3-installer_0.7.0+dfsg1-3_all.deb ... 363s Unpacking python3-installer (0.7.0+dfsg1-3) ... 363s Selecting previously unselected package pybuild-plugin-pyproject. 363s Preparing to unpack .../069-pybuild-plugin-pyproject_6.20241024_all.deb ... 363s Unpacking pybuild-plugin-pyproject (6.20241024) ... 363s Selecting previously unselected package python3.13. 363s Preparing to unpack .../070-python3.13_3.13.0-2_armhf.deb ... 363s Unpacking python3.13 (3.13.0-2) ... 363s Selecting previously unselected package python3-all. 363s Preparing to unpack .../071-python3-all_3.12.7-1_armhf.deb ... 363s Unpacking python3-all (3.12.7-1) ... 363s Selecting previously unselected package python3-asciitree. 363s Preparing to unpack .../072-python3-asciitree_0.3.3-4_all.deb ... 363s Unpacking python3-asciitree (0.3.3-4) ... 363s Selecting previously unselected package python3-soupsieve. 363s Preparing to unpack .../073-python3-soupsieve_2.6-1_all.deb ... 363s Unpacking python3-soupsieve (2.6-1) ... 363s Selecting previously unselected package python3-bs4. 363s Preparing to unpack .../074-python3-bs4_4.12.3-3_all.deb ... 363s Unpacking python3-bs4 (4.12.3-3) ... 363s Selecting previously unselected package python3-defusedxml. 363s Preparing to unpack .../075-python3-defusedxml_0.7.1-2_all.deb ... 363s Unpacking python3-defusedxml (0.7.1-2) ... 363s Selecting previously unselected package python3-roman. 363s Preparing to unpack .../076-python3-roman_4.2-1_all.deb ... 363s Unpacking python3-roman (4.2-1) ... 363s Selecting previously unselected package python3-docutils. 363s Preparing to unpack .../077-python3-docutils_0.21.2+dfsg-2_all.deb ... 363s Unpacking python3-docutils (0.21.2+dfsg-2) ... 363s Selecting previously unselected package python3-monotonic. 363s Preparing to unpack .../078-python3-monotonic_1.6-2_all.deb ... 363s Unpacking python3-monotonic (1.6-2) ... 363s Selecting previously unselected package python3-fasteners. 363s Preparing to unpack .../079-python3-fasteners_0.18-2_all.deb ... 363s Unpacking python3-fasteners (0.18-2) ... 363s Selecting previously unselected package python3-fsspec. 363s Preparing to unpack .../080-python3-fsspec_2024.9.0-1_all.deb ... 363s Unpacking python3-fsspec (2024.9.0-1) ... 363s Selecting previously unselected package python3-numpy. 363s Preparing to unpack .../081-python3-numpy_1%3a1.26.4+ds-11ubuntu1_armhf.deb ... 363s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 363s Selecting previously unselected package python3-h5py-serial. 363s Preparing to unpack .../082-python3-h5py-serial_3.11.0-5ubuntu1_armhf.deb ... 363s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 364s Selecting previously unselected package python3-h5py. 364s Preparing to unpack .../083-python3-h5py_3.11.0-5ubuntu1_all.deb ... 364s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 364s Selecting previously unselected package python3-imagesize. 364s Preparing to unpack .../084-python3-imagesize_1.4.1-1_all.deb ... 364s Unpacking python3-imagesize (1.4.1-1) ... 364s Selecting previously unselected package python3-iniconfig. 364s Preparing to unpack .../085-python3-iniconfig_1.1.1-2_all.deb ... 364s Unpacking python3-iniconfig (1.1.1-2) ... 364s Selecting previously unselected package python3-msgpack. 364s Preparing to unpack .../086-python3-msgpack_1.0.3-3build3_armhf.deb ... 364s Unpacking python3-msgpack (1.0.3-3build3) ... 364s Selecting previously unselected package sphinx-common. 364s Preparing to unpack .../087-sphinx-common_7.4.7-4_all.deb ... 364s Unpacking sphinx-common (7.4.7-4) ... 364s Selecting previously unselected package python3-alabaster. 364s Preparing to unpack .../088-python3-alabaster_0.7.16-0.1_all.deb ... 364s Unpacking 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python3-zarr. 365s Preparing to unpack .../104-python3-zarr_2.18.3+ds-2_all.deb ... 365s Unpacking python3-zarr (2.18.3+ds-2) ... 365s Setting up dh-python (6.20241024) ... 365s Setting up python3-iniconfig (1.1.1-2) ... 365s Setting up python3-defusedxml (0.7.1-2) ... 365s Setting up libarchive-zip-perl (1.68-1) ... 365s Setting up python3-alabaster (0.7.16-0.1) ... 366s Setting up libdebhelper-perl (13.20ubuntu1) ... 366s Setting up python3-fsspec (2024.9.0-1) ... 366s Setting up linux-libc-dev:armhf (6.11.0-8.8) ... 366s Setting up python3-tabulate (0.9.0-1) ... 367s Setting up m4 (1.4.19-4build1) ... 367s Setting up libgomp1:armhf (14.2.0-9ubuntu1) ... 367s Setting up python3-wheel (0.45.1-1) ... 367s Setting up libaec0:armhf (1.1.3-1) ... 367s Setting up libsnappy1v5:armhf (1.2.1-1) ... 367s Setting up python3-monotonic (1.6-2) ... 367s Setting up libpython3.13-minimal:armhf (3.13.0-2) ... 367s Setting up python3-roman (4.2-1) ... 367s Setting up autotools-dev (20220109.1) ... 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Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 406s rootdir: /tmp/autopkgtest.KUCIcy/autopkgtest_tmp/build 406s configfile: pyproject.toml 406s plugins: typeguard-4.4.1, doctestplus-1.3.0, timeout-2.3.1 406s collected 5174 items / 769 deselected / 4405 selected 406s 406s tests/test_attrs.py .................. 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[100%] 519s 519s ==================================== ERRORS ==================================== 519s ____________ ERROR at setup of TestCopy.test_copy_array[zarr-hdf5] _____________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_zarr_hdf5_0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def dest(self, request, tmpdir): 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 519s ____________ ERROR at setup of TestCopy.test_copy_array[hdf5-zarr] _____________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_hdf5_zarr_0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ____________ ERROR at setup of TestCopy.test_copy_array[hdf5-hdf5] _____________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_hdf5_hdf5_0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ___________ ERROR at setup of TestCopy.test_copy_bad_dest[zarr-hdf5] ___________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_bad_dest_zarr_hdf5_0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def dest(self, request, tmpdir): 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 519s ___________ ERROR at setup of TestCopy.test_copy_bad_dest[hdf5-zarr] ___________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_bad_dest_hdf5_zarr_0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ___________ ERROR at setup of TestCopy.test_copy_bad_dest[hdf5-hdf5] ___________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_bad_dest_hdf5_hdf5_0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s __________ ERROR at setup of TestCopy.test_copy_array_name[zarr-hdf5] __________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_name_zarr_hdf50') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def dest(self, request, tmpdir): 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 519s __________ ERROR at setup of TestCopy.test_copy_array_name[hdf5-zarr] __________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_name_hdf5_zarr0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s __________ ERROR at setup of TestCopy.test_copy_array_name[hdf5-hdf5] __________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_name_hdf5_hdf50') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s _____ ERROR at setup of TestCopy.test_copy_array_create_options[zarr-hdf5] _____ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_create_options1') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def dest(self, request, tmpdir): 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 519s _____ ERROR at setup of TestCopy.test_copy_array_create_options[hdf5-zarr] _____ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_create_options2') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s _____ ERROR at setup of TestCopy.test_copy_array_create_options[hdf5-hdf5] _____ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_create_options3') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ______ ERROR at setup of TestCopy.test_copy_array_exists_array[zarr-hdf5] ______ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_array_z1') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def dest(self, request, tmpdir): 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 519s ______ ERROR at setup of TestCopy.test_copy_array_exists_array[hdf5-zarr] ______ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_array_h0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ______ ERROR at setup of TestCopy.test_copy_array_exists_array[hdf5-hdf5] ______ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_array_h1') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ______ ERROR at setup of TestCopy.test_copy_array_exists_group[zarr-hdf5] ______ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_group_z1') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def dest(self, request, tmpdir): 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 519s ______ ERROR at setup of TestCopy.test_copy_array_exists_group[hdf5-zarr] ______ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_group_h0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ______ ERROR at setup of TestCopy.test_copy_array_exists_group[hdf5-hdf5] ______ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_group_h1') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ____ ERROR at setup of TestCopy.test_copy_array_skip_initialized[zarr-hdf5] ____ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_skip_initializ1') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def dest(self, request, tmpdir): 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 519s ____ ERROR at setup of TestCopy.test_copy_array_skip_initialized[hdf5-zarr] ____ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_skip_initializ2') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ____ ERROR at setup of TestCopy.test_copy_array_skip_initialized[hdf5-hdf5] ____ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_skip_initializ3') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ____________ ERROR at setup of TestCopy.test_copy_group[zarr-hdf5] _____________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_zarr_hdf5_0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def dest(self, request, tmpdir): 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 519s ____________ ERROR at setup of TestCopy.test_copy_group[hdf5-zarr] _____________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_hdf5_zarr_0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ____________ ERROR at setup of TestCopy.test_copy_group[hdf5-hdf5] _____________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_hdf5_hdf5_0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ________ ERROR at setup of TestCopy.test_copy_group_no_name[zarr-hdf5] _________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_no_name_zarr_h0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def dest(self, request, tmpdir): 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 519s ________ ERROR at setup of TestCopy.test_copy_group_no_name[hdf5-zarr] _________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_no_name_hdf5_z0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ________ ERROR at setup of TestCopy.test_copy_group_no_name[hdf5-hdf5] _________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_no_name_hdf5_h0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ________ ERROR at setup of TestCopy.test_copy_group_options[zarr-hdf5] _________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_options_zarr_h0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def dest(self, request, tmpdir): 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 519s ________ ERROR at setup of TestCopy.test_copy_group_options[hdf5-zarr] _________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_options_hdf5_z0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ________ ERROR at setup of TestCopy.test_copy_group_options[hdf5-hdf5] _________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_options_hdf5_h0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ________ ERROR at setup of TestCopy.test_copy_group_shallow[zarr-hdf5] _________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_shallow_zarr_h0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def dest(self, request, tmpdir): 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 519s ________ ERROR at setup of TestCopy.test_copy_group_shallow[hdf5-zarr] _________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_shallow_hdf5_z0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ________ ERROR at setup of TestCopy.test_copy_group_shallow[hdf5-hdf5] _________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_shallow_hdf5_h0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ______ ERROR at setup of TestCopy.test_copy_group_exists_group[zarr-hdf5] ______ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_group_z1') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def dest(self, request, tmpdir): 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 519s ______ ERROR at setup of TestCopy.test_copy_group_exists_group[hdf5-zarr] ______ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_group_h0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ______ ERROR at setup of TestCopy.test_copy_group_exists_group[hdf5-hdf5] ______ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_group_h1') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ______ ERROR at setup of TestCopy.test_copy_group_exists_array[zarr-hdf5] ______ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_array_z1') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def dest(self, request, tmpdir): 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 519s ______ ERROR at setup of TestCopy.test_copy_group_exists_array[hdf5-zarr] ______ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_array_h0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ______ ERROR at setup of TestCopy.test_copy_group_exists_array[hdf5-hdf5] ______ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_array_h1') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ________ ERROR at setup of TestCopy.test_copy_group_dry_run[zarr-hdf5] _________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_dry_run_zarr_h0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def dest(self, request, tmpdir): 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 519s ________ ERROR at setup of TestCopy.test_copy_group_dry_run[hdf5-zarr] _________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_dry_run_hdf5_z0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ________ ERROR at setup of TestCopy.test_copy_group_dry_run[hdf5-hdf5] _________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_dry_run_hdf5_h0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ______________ ERROR at setup of TestCopy.test_logging[zarr-hdf5] ______________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_logging_zarr_hdf5_0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def dest(self, request, tmpdir): 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 519s ______________ ERROR at setup of TestCopy.test_logging[hdf5-zarr] ______________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_logging_hdf5_zarr_0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s ______________ ERROR at setup of TestCopy.test_logging[hdf5-hdf5] ______________ 519s 519s self = 519s request = > 519s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_logging_hdf5_hdf5_0') 519s 519s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 519s def source(self, request, tmpdir): 519s def prep_source(source): 519s foo = source.create_group("foo") 519s foo.attrs["experiment"] = "weird science" 519s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 519s baz.attrs["units"] = "metres" 519s if request.param: 519s extra_kws = dict( 519s compression="gzip", 519s compression_opts=3, 519s fillvalue=84, 519s shuffle=True, 519s fletcher32=True, 519s ) 519s else: 519s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 519s source.create_dataset( 519s "spam", 519s data=np.arange(100, 200).reshape(20, 5), 519s chunks=(10, 2), 519s dtype="i2", 519s **extra_kws, 519s ) 519s return source 519s 519s if request.param: 519s > h5py = pytest.importorskip("h5py") 519s E pytest.PytestDeprecationWarning: 519s E Module 'h5py' was found, but when imported by pytest it raised: 519s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 519s E In pytest 9.1 this warning will become an error by default. 519s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 519s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 519s 519s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 519s =============================== warnings summary =============================== 519s tests/test_core.py::TestArrayWithDBMStore::test_array_1d 519s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 519s 519s Traceback (most recent call last): 519s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 355, in 519s chunk_coords = tuple(p.dim_chunk_ix for p in dim_projections) 519s 519s ResourceWarning: unclosed database in 519s 519s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 519s 519s tests/test_core.py::TestArrayWithDBMStore::test_object_arrays_danger 519s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 519s 519s Traceback (most recent call last): 519s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 357, in 519s out_selection = tuple( 519s 519s ResourceWarning: unclosed database in 519s 519s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 519s 519s tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d 519s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 519s 519s Traceback (most recent call last): 519s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 356, in 519s chunk_selection = tuple(p.dim_chunk_sel for p in dim_projections) 519s 519s ResourceWarning: unclosed database in 519s 519s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 519s 519s tests/test_core.py::TestArrayWithSQLiteStore::test_object_arrays_vlen_text 519s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 519s 519s Traceback (most recent call last): 519s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 219, in __iter__ 519s dim_chunk_sel = slice(dim_chunk_sel_start, dim_chunk_sel_stop, self.step) 519s ResourceWarning: unclosed database in 519s 519s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 519s 519s tests/test_core.py::TestArrayWithNoCompressor::test_array_2d 519s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 519s 519s Traceback (most recent call last): 519s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 355, in 519s chunk_coords = tuple(p.dim_chunk_ix for p in dim_projections) 519s 519s ResourceWarning: unclosed database in 519s 519s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 519s 519s tests/test_core.py::TestArrayWithNoCompressor::test_iter 519s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 519s 519s Traceback (most recent call last): 519s File "/usr/lib/python3/dist-packages/zarr/util.py", line 249, in is_total_slice 519s for it, sh in zip(item, shape) 519s ~~~^^^^^^^^^^^^^ 519s ResourceWarning: unclosed database in 519s 519s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 519s 519s tests/test_filters.py::test_array_with_scaleoffset_filter 519s /usr/lib/python3/dist-packages/numcodecs/fixedscaleoffset.py:97: RuntimeWarning: invalid value encountered in cast 519s enc = enc.astype(self.astype, copy=False) 519s 519s tests/test_storage.py::TestZipStore::test_store_and_retrieve_ndarray 519s /usr/lib/python3.13/zipfile/__init__.py:1638: UserWarning: Duplicate name: 'foo' 519s return self._open_to_write(zinfo, force_zip64=force_zip64) 519s 519s tests/test_sync.py: 32 warnings 519s /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=2438) is multi-threaded, use of fork() may lead to deadlocks in the child. 519s self.pid = os.fork() 519s 519s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 519s ============================= slowest 10 durations ============================= 519s 10.19s call tests/test_indexing.py::test_set_orthogonal_selection_3d 519s 5.19s call tests/test_core.py::TestArrayWithSQLiteStore::test_iter 519s 3.47s call tests/test_core.py::TestArrayWithSQLiteStore::test_islice 519s 2.84s call tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d 519s 2.78s call tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d 519s 2.70s call tests/test_core.py::TestArrayWithFSStorePartialRead::test_non_cont 519s 2.68s call tests/test_storage.py::test_format_compatibility 519s 2.67s call tests/test_core.py::TestArrayWithSQLiteStore::test_array_order 519s 2.19s call tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d_axis 519s 1.95s call tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_non_cont 519s =========================== short test summary info ============================ 519s ERROR tests/test_convenience.py::TestCopy::test_copy_array[zarr-hdf5] - pytes... 519s ERROR tests/test_convenience.py::TestCopy::test_copy_array[hdf5-zarr] - pytes... 519s ERROR tests/test_convenience.py::TestCopy::test_copy_array[hdf5-hdf5] - pytes... 519s ERROR tests/test_convenience.py::TestCopy::test_copy_bad_dest[zarr-hdf5] - py... 519s ERROR tests/test_convenience.py::TestCopy::test_copy_bad_dest[hdf5-zarr] - py... 519s ERROR tests/test_convenience.py::TestCopy::test_copy_bad_dest[hdf5-hdf5] - py... 519s ERROR tests/test_convenience.py::TestCopy::test_copy_array_name[zarr-hdf5] - ... 519s ERROR tests/test_convenience.py::TestCopy::test_copy_array_name[hdf5-zarr] - ... 519s ERROR tests/test_convenience.py::TestCopy::test_copy_array_name[hdf5-hdf5] - ... 519s ERROR tests/test_convenience.py::TestCopy::test_copy_array_create_options[zarr-hdf5] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_array_create_options[hdf5-zarr] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_array_create_options[hdf5-hdf5] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_array[zarr-hdf5] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_array[hdf5-zarr] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_array[hdf5-hdf5] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_group[zarr-hdf5] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_group[hdf5-zarr] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_group[hdf5-hdf5] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_array_skip_initialized[zarr-hdf5] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_array_skip_initialized[hdf5-zarr] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_array_skip_initialized[hdf5-hdf5] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group[zarr-hdf5] - pytes... 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group[hdf5-zarr] - pytes... 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group[hdf5-hdf5] - pytes... 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group_no_name[zarr-hdf5] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group_no_name[hdf5-zarr] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group_no_name[hdf5-hdf5] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group_options[zarr-hdf5] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group_options[hdf5-zarr] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group_options[hdf5-hdf5] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group_shallow[zarr-hdf5] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group_shallow[hdf5-zarr] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group_shallow[hdf5-hdf5] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_group[zarr-hdf5] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_group[hdf5-zarr] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_group[hdf5-hdf5] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_array[zarr-hdf5] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_array[hdf5-zarr] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_array[hdf5-hdf5] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group_dry_run[zarr-hdf5] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group_dry_run[hdf5-zarr] 519s ERROR tests/test_convenience.py::TestCopy::test_copy_group_dry_run[hdf5-hdf5] 519s ERROR tests/test_convenience.py::TestCopy::test_logging[zarr-hdf5] - pytest.P... 519s ERROR tests/test_convenience.py::TestCopy::test_logging[hdf5-zarr] - pytest.P... 519s ERROR tests/test_convenience.py::TestCopy::test_logging[hdf5-hdf5] - pytest.P... 519s = 2205 passed, 2151 skipped, 769 deselected, 4 xfailed, 40 warnings, 45 errors in 115.55s (0:01:55) = 521s E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /tmp/autopkgtest.KUCIcy/autopkgtest_tmp/build; python3.13 -m pytest -k "not test_hierarchy and not test_complex and not test_array_with_delta_filter and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853 and not test_encode_decode_array_dtype_shape_v3" --pyargs zarr 521s I: pybuild base:311: cd /tmp/autopkgtest.KUCIcy/autopkgtest_tmp/build; python3.12 -m pytest -k "not test_hierarchy and not test_complex and not test_array_with_delta_filter and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853 and not test_encode_decode_array_dtype_shape_v3" --pyargs zarr 524s ============================= test session starts ============================== 524s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 524s rootdir: /tmp/autopkgtest.KUCIcy/autopkgtest_tmp/build 524s configfile: pyproject.toml 524s plugins: typeguard-4.4.1, doctestplus-1.3.0, timeout-2.3.1 524s collected 5174 items / 769 deselected / 4405 selected 524s 524s tests/test_attrs.py .................. 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[ 57%] 594s tests/test_creation.py ................................................. [ 58%] 594s ..................................ss..... [ 59%] 594s tests/test_dim_separator.py ..........................x....x [ 60%] 594s tests/test_filters.py ...... [ 60%] 607s tests/test_indexing.py ................................................. [ 61%] 607s ......xx...... [ 61%] 607s tests/test_info.py .. [ 61%] 607s tests/test_meta.py ......................... [ 62%] 607s tests/test_meta_array.py .sss.sss.sss.sss.sss.sss.sss.sss..ssssss..sssss [ 63%] 607s s..ssssss..ssssss [ 63%] 607s tests/test_n5.py ..... [ 63%] 607s tests/test_storage.py ...................s........................s..... [ 65%] 607s ...................s.................................................... [ 66%] 608s .......................ss..............s................................ [ 68%] 608s ........................................................................ 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[100%] 618s 618s =============================== warnings summary =============================== 618s tests/test_filters.py::test_array_with_scaleoffset_filter 618s /usr/lib/python3/dist-packages/numcodecs/fixedscaleoffset.py:97: RuntimeWarning: invalid value encountered in cast 618s enc = enc.astype(self.astype, copy=False) 618s 618s tests/test_storage.py::TestZipStore::test_store_and_retrieve_ndarray 618s /usr/lib/python3.12/zipfile/__init__.py:1607: UserWarning: Duplicate name: 'foo' 618s return self._open_to_write(zinfo, force_zip64=force_zip64) 618s 618s tests/test_sync.py: 32 warnings 618s /usr/lib/python3.12/multiprocessing/popen_fork.py:66: DeprecationWarning: This process (pid=2541) is multi-threaded, use of fork() may lead to deadlocks in the child. 618s self.pid = os.fork() 618s 618s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 618s ============================= slowest 10 durations ============================= 618s 9.49s call tests/test_indexing.py::test_set_orthogonal_selection_3d 618s 3.18s call tests/test_core.py::TestArrayWithSQLiteStore::test_iter 618s 2.82s call tests/test_core.py::TestArrayWithSQLiteStore::test_islice 618s 2.31s call tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d 618s 2.26s call tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d_axis 618s 2.18s call tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d 618s 2.09s call tests/test_core.py::TestArrayWithFSStorePartialRead::test_non_cont 618s 1.87s call tests/test_core.py::TestArrayWithSQLiteStore::test_array_order 618s 1.53s call tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_non_cont 618s 1.27s call tests/test_indexing.py::test_set_orthogonal_selection_2d 618s = 2250 passed, 2151 skipped, 769 deselected, 4 xfailed, 34 warnings in 96.53s (0:01:36) = 620s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13 620s make: *** [/tmp/6lPkkkIQ6h/run:4: pybuild-autopkgtest] Error 25 620s pybuild-autopkgtest: error: /tmp/6lPkkkIQ6h/run pybuild-autopkgtest returned exit code 2 620s autopkgtest [09:45:09]: test pybuild-autopkgtest: -----------------------] 626s pybuild-autopkgtest FAIL non-zero exit status 25 626s autopkgtest [09:45:15]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 633s autopkgtest [09:45:22]: @@@@@@@@@@@@@@@@@@@@ summary 633s pybuild-autopkgtest FAIL non-zero exit status 25