0s autopkgtest [18:27:12]: starting date and time: 2025-03-15 18:27:12+0000 0s autopkgtest [18:27:12]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [18:27:12]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.07adjzgi/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade yaha --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.210 lxd-armhf-10.145.243.210:autopkgtest/ubuntu/plucky/armhf 21s autopkgtest [18:27:33]: testbed dpkg architecture: armhf 23s autopkgtest [18:27:35]: testbed apt version: 2.9.33 27s autopkgtest [18:27:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup 29s autopkgtest [18:27:41]: testbed release detected to be: None 37s autopkgtest [18:27:49]: updating testbed package index (apt update) 39s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 40s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 40s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 40s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 40s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 41s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 41s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 41s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [114 kB] 41s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1832 B] 41s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 41s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [312 kB] 41s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [11.1 kB] 41s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 41s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 41s Get:15 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 42s Get:16 http://ftpmaster.internal/ubuntu plucky/main Sources [1394 kB] 43s Get:17 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 67s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 69s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 69s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 69s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 83s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 85s Fetched 41.0 MB in 45s (904 kB/s) 87s Reading package lists... 94s autopkgtest [18:28:46]: upgrading testbed (apt dist-upgrade and autopurge) 95s Reading package lists... 96s Building dependency tree... 96s Reading state information... 97s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 97s Starting 2 pkgProblemResolver with broken count: 0 97s Done 98s Entering ResolveByKeep 99s 99s Calculating upgrade... 100s The following packages will be upgraded: 100s libc-bin libc6 locales pinentry-curses python3-jinja2 sos strace 100s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 100s Need to get 8683 kB of archives. 100s After this operation, 23.6 kB of additional disk space will be used. 100s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 103s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 103s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 107s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 107s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 107s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 108s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 109s Preconfiguring packages ... 109s Fetched 8683 kB in 8s (1138 kB/s) 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 109s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 110s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 110s Setting up libc6:armhf (2.41-1ubuntu2) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 110s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 110s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 110s Setting up libc-bin (2.41-1ubuntu2) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 111s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 111s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 112s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 112s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 112s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 112s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 112s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 112s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 112s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 113s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 113s Setting up sos (4.9.0-5) ... 114s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 114s Setting up locales (2.41-1ubuntu2) ... 116s Generating locales (this might take a while)... 119s en_US.UTF-8... done 119s Generation complete. 119s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 120s Setting up strace (6.13+ds-1ubuntu1) ... 120s Processing triggers for man-db (2.13.0-1) ... 121s Processing triggers for systemd (257.3-1ubuntu3) ... 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 129s Starting pkgProblemResolver with broken count: 0 129s Starting 2 pkgProblemResolver with broken count: 0 129s Done 130s Solving dependencies... 132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s autopkgtest [18:29:26]: rebooting testbed after setup commands that affected boot 181s autopkgtest [18:30:13]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 207s autopkgtest [18:30:39]: @@@@@@@@@@@@@@@@@@@@ apt-source yaha 335s Get:1 http://ftpmaster.internal/ubuntu plucky/universe yaha 0.1.83-3 (dsc) [1941 B] 335s Get:2 http://ftpmaster.internal/ubuntu plucky/universe yaha 0.1.83-3 (tar) [104 MB] 335s Get:3 http://ftpmaster.internal/ubuntu plucky/universe yaha 0.1.83-3 (diff) [5124 B] 335s gpgv: Signature made Sun Aug 15 17:24:36 2021 UTC 335s gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 335s gpgv: issuer "npatra974@gmail.com" 335s gpgv: Can't check signature: No public key 335s dpkg-source: warning: cannot verify inline signature for ./yaha_0.1.83-3.dsc: no acceptable signature found 337s autopkgtest [18:32:49]: testing package yaha version 0.1.83-3 339s autopkgtest [18:32:51]: build not needed 344s autopkgtest [18:32:56]: test run-unit-test: preparing testbed 346s Reading package lists... 347s Building dependency tree... 347s Reading state information... 347s Starting pkgProblemResolver with broken count: 0 347s Starting 2 pkgProblemResolver with broken count: 0 347s Done 349s The following NEW packages will be installed: 349s yaha 349s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 349s Need to get 39.7 kB of archives. 349s After this operation, 73.7 kB of additional disk space will be used. 349s Get:1 http://ftpmaster.internal/ubuntu plucky/universe armhf yaha armhf 0.1.83-3 [39.7 kB] 349s Fetched 39.7 kB in 0s (139 kB/s) 350s Selecting previously unselected package yaha. 350s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 350s Preparing to unpack .../yaha_0.1.83-3_armhf.deb ... 350s Unpacking yaha (0.1.83-3) ... 350s Setting up yaha (0.1.83-3) ... 350s Processing triggers for man-db (2.13.0-1) ... 358s autopkgtest [18:33:10]: test run-unit-test: [----------------------- 360s YAHA version 0.1.83 360s Compressing hg18L100E10Q100K.fasta into hg18L100E10Q100K.nib2. 360s Finished compressing hg18L100E10Q100K.nib2, now forming index. 360s Creating index file hg18L100E10Q100K.X13_13_10000S. 361s Randomly Sampling hits for 13-mers that occur more than 10000 times in the reference. 362s 0 13-mers had more than 10000 hits. 362s Index hg18L100E10Q100K.X13_13_10000S created. 362s Number of non-IO page faults: 199809, Number of IO page faults: 0. 362s Operation on hg18L100E10Q100K.nib2 used 0.755S User, 1.097S System, Total: 1.852S in 2S wall time. 362s YAHA version 0.1.83 380s Query setup and hashing took: 2.725S User CPU time (15.42%). 380s Sorting k-mers and forming fragments took: 0.643S User CPU time (3.64%). 380s Collecting fragments into clumps (using graph) took: 0.358S User CPU time (2.03%). 380s Aligning and scoring clumps took: 1.856S User CPU time (10.51%). 380s Filtering clumps took: 10.741S User CPU time (60.80%). 380s Printing clumps took: 1.342S User CPU time (7.60%). 380s Number of non-IO page faults: 8268, Number of IO page faults: 0. 380s Operation on hg18L100E05Q100K.fasta used 17.697S User, 0.667S System, Total: 18.364S in 18S wall time. 380s PASS Test 381s autopkgtest [18:33:33]: test run-unit-test: -----------------------] 385s run-unit-test PASS 385s autopkgtest [18:33:37]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 390s autopkgtest [18:33:42]: @@@@@@@@@@@@@@@@@@@@ summary 390s run-unit-test PASS