0s autopkgtest [11:23:44]: starting date and time: 2025-03-15 11:23:44+0000 0s autopkgtest [11:23:44]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [11:23:44]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.p119wpml/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade vt --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.163 lxd-armhf-10.145.243.163:autopkgtest/ubuntu/plucky/armhf 21s autopkgtest [11:24:05]: testbed dpkg architecture: armhf 22s autopkgtest [11:24:06]: testbed apt version: 2.9.33 26s autopkgtest [11:24:10]: @@@@@@@@@@@@@@@@@@@@ test bed setup 28s autopkgtest [11:24:12]: testbed release detected to be: None 36s autopkgtest [11:24:20]: updating testbed package index (apt update) 38s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 38s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 38s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 39s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 39s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [410 kB] 39s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [46.2 kB] 39s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 39s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [80.8 kB] 39s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1860 B] 39s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 39s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [332 kB] 40s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [12.1 kB] 40s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 40s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [332 B] 40s Get:15 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 65s Get:16 http://ftpmaster.internal/ubuntu plucky/main Sources [1388 kB] 66s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1379 kB] 68s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 68s Get:19 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 68s Get:20 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [14.9 MB] 84s Fetched 40.3 MB in 47s (864 kB/s) 85s Reading package lists... 91s autopkgtest [11:25:15]: upgrading testbed (apt dist-upgrade and autopurge) 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 94s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 94s Starting 2 pkgProblemResolver with broken count: 0 94s Done 95s Entering ResolveByKeep 96s 96s Calculating upgrade... 97s The following packages will be upgraded: 97s libc-bin libc6 locales python3-jinja2 strace 97s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Need to get 8277 kB of archives. 97s After this operation, 23.6 kB of additional disk space will be used. 97s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 102s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 102s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 109s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 110s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 110s Preconfiguring packages ... 110s Fetched 8277 kB in 13s (626 kB/s) 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 111s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 111s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 111s Setting up libc6:armhf (2.41-1ubuntu2) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 111s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 111s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 111s Setting up libc-bin (2.41-1ubuntu2) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 111s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 111s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 112s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 112s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 112s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 112s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 112s Setting up locales (2.41-1ubuntu2) ... 113s Generating locales (this might take a while)... 115s en_US.UTF-8... done 115s Generation complete. 115s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 116s Setting up strace (6.13+ds-1ubuntu1) ... 116s Processing triggers for man-db (2.13.0-1) ... 117s Processing triggers for systemd (257.3-1ubuntu3) ... 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 120s Starting pkgProblemResolver with broken count: 0 120s Starting 2 pkgProblemResolver with broken count: 0 120s Done 121s Solving dependencies... 121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s autopkgtest [11:25:47]: rebooting testbed after setup commands that affected boot 163s autopkgtest [11:26:27]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 187s autopkgtest [11:26:51]: @@@@@@@@@@@@@@@@@@@@ apt-source vt 222s Get:1 http://ftpmaster.internal/ubuntu plucky/universe vt 0.57721+ds-3build2 (dsc) [2240 B] 222s Get:2 http://ftpmaster.internal/ubuntu plucky/universe vt 0.57721+ds-3build2 (tar) [18.6 MB] 222s Get:3 http://ftpmaster.internal/ubuntu plucky/universe vt 0.57721+ds-3build2 (diff) [8272 B] 222s gpgv: Signature made Mon Apr 1 08:33:26 2024 UTC 222s gpgv: using RSA key A089FB36AAFBDAD5ACC1325069F790171A210984 222s gpgv: Can't check signature: No public key 222s dpkg-source: warning: cannot verify inline signature for ./vt_0.57721+ds-3build2.dsc: no acceptable signature found 222s autopkgtest [11:27:26]: testing package vt version 0.57721+ds-3build2 224s autopkgtest [11:27:28]: build not needed 228s autopkgtest [11:27:32]: test basic: preparing testbed 229s Reading package lists... 230s Building dependency tree... 230s Reading state information... 230s Starting pkgProblemResolver with broken count: 0 230s Starting 2 pkgProblemResolver with broken count: 0 230s Done 231s The following NEW packages will be installed: 231s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 231s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgfortran5 231s libgomp1 libgraphite2-3 libharfbuzz0b libhts3t64 libhtscodecs2 libice6 231s libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblerc4 libpango-1.0-0 231s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 231s libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 231s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 231s r-base-core unzip vt vt-examples x11-common xdg-utils zip 231s 0 upgraded, 49 newly installed, 0 to remove and 0 not upgraded. 231s Need to get 57.2 MB of archives. 231s After this operation, 91.6 MB of additional disk space will be used. 231s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 232s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 232s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 233s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-2ubuntu1 [37.5 kB] 233s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-2ubuntu1 [114 kB] 233s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig armhf 2.15.0-2ubuntu1 [190 kB] 233s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.1-2 [132 kB] 234s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 234s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 234s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 234s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 234s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB] 234s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libdatrie1 armhf 0.2.13-3build1 [15.7 kB] 234s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.23-1 [38.5 kB] 234s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 15-20250222-0ubuntu1 [330 kB] 235s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 15-20250222-0ubuntu1 [128 kB] 235s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 235s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.2.0-1 [464 kB] 235s Get:19 http://ftpmaster.internal/ubuntu plucky/universe armhf libhtscodecs2 armhf 1.6.1-2 [67.5 kB] 235s Get:20 http://ftpmaster.internal/ubuntu plucky/universe armhf libhts3t64 armhf 1.21+ds-1 [399 kB] 236s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 236s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libice6 armhf 2:1.1.1-1 [36.5 kB] 236s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 236s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 236s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.1-2 [2091 kB] 239s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 239s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libthai-data all 0.1.29-2build1 [158 kB] 239s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libthai0 armhf 0.1.29-2build1 [15.2 kB] 239s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libpango-1.0-0 armhf 1.56.1-1 [216 kB] 239s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libpangoft2-1.0-0 armhf 1.56.1-1 [43.5 kB] 239s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libpangocairo-1.0-0 armhf 1.56.1-1 [25.1 kB] 239s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libpaper2 armhf 2.2.5-0.3 [16.3 kB] 239s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libpaper-utils armhf 2.2.5-0.3 [14.2 kB] 239s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 239s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libsm6 armhf 2:1.2.4-1 [15.1 kB] 239s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libtcl8.6 armhf 8.6.16+dfsg-1 [909 kB] 241s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 241s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 241s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 241s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 241s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 241s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libtk8.6 armhf 8.6.16-1 [686 kB] 242s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libxt6t64 armhf 1:1.2.1-1.2build1 [145 kB] 242s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf zip armhf 3.0-14ubuntu2 [164 kB] 242s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf unzip armhf 6.0-28ubuntu6 [167 kB] 242s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 242s Get:47 http://ftpmaster.internal/ubuntu plucky/universe armhf r-base-core armhf 4.4.3-1 [28.2 MB] 272s Get:48 http://ftpmaster.internal/ubuntu plucky/universe armhf vt armhf 0.57721+ds-3build2 [777 kB] 272s Get:49 http://ftpmaster.internal/ubuntu plucky/universe armhf vt-examples all 0.57721+ds-3build2 [18.4 MB] 289s Preconfiguring packages ... 289s Fetched 57.2 MB in 57s (996 kB/s) 289s Selecting previously unselected package libfreetype6:armhf. 289s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 289s Preparing to unpack .../00-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 289s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 289s Selecting previously unselected package fonts-dejavu-mono. 289s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 289s Unpacking fonts-dejavu-mono (2.37-8) ... 289s Selecting previously unselected package fonts-dejavu-core. 289s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 289s Unpacking fonts-dejavu-core (2.37-8) ... 289s Selecting previously unselected package fontconfig-config. 289s Preparing to unpack .../03-fontconfig-config_2.15.0-2ubuntu1_armhf.deb ... 289s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 289s Selecting previously unselected package libfontconfig1:armhf. 289s Preparing to unpack .../04-libfontconfig1_2.15.0-2ubuntu1_armhf.deb ... 289s Unpacking libfontconfig1:armhf (2.15.0-2ubuntu1) ... 289s Selecting previously unselected package fontconfig. 289s Preparing to unpack .../05-fontconfig_2.15.0-2ubuntu1_armhf.deb ... 289s Unpacking fontconfig (2.15.0-2ubuntu1) ... 289s Selecting previously unselected package libblas3:armhf. 289s Preparing to unpack .../06-libblas3_3.12.1-2_armhf.deb ... 289s Unpacking libblas3:armhf (3.12.1-2) ... 289s Selecting previously unselected package libpixman-1-0:armhf. 289s Preparing to unpack .../07-libpixman-1-0_0.44.0-3_armhf.deb ... 289s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 290s Selecting previously unselected package libxcb-render0:armhf. 290s Preparing to unpack .../08-libxcb-render0_1.17.0-2_armhf.deb ... 290s Unpacking libxcb-render0:armhf (1.17.0-2) ... 290s Selecting previously unselected package libxcb-shm0:armhf. 290s Preparing to unpack .../09-libxcb-shm0_1.17.0-2_armhf.deb ... 290s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 290s Selecting previously unselected package libxrender1:armhf. 290s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 290s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 290s Selecting previously unselected package libcairo2:armhf. 290s Preparing to unpack .../11-libcairo2_1.18.2-2_armhf.deb ... 290s Unpacking libcairo2:armhf (1.18.2-2) ... 290s Selecting previously unselected package libdatrie1:armhf. 290s Preparing to unpack .../12-libdatrie1_0.2.13-3build1_armhf.deb ... 290s Unpacking libdatrie1:armhf (0.2.13-3build1) ... 290s Selecting previously unselected package libdeflate0:armhf. 290s Preparing to unpack .../13-libdeflate0_1.23-1_armhf.deb ... 290s Unpacking libdeflate0:armhf (1.23-1) ... 290s Selecting previously unselected package libgfortran5:armhf. 290s Preparing to unpack .../14-libgfortran5_15-20250222-0ubuntu1_armhf.deb ... 290s Unpacking libgfortran5:armhf (15-20250222-0ubuntu1) ... 290s Selecting previously unselected package libgomp1:armhf. 290s Preparing to unpack .../15-libgomp1_15-20250222-0ubuntu1_armhf.deb ... 290s Unpacking libgomp1:armhf (15-20250222-0ubuntu1) ... 290s Selecting previously unselected package libgraphite2-3:armhf. 290s Preparing to unpack .../16-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 290s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 290s Selecting previously unselected package libharfbuzz0b:armhf. 290s Preparing to unpack .../17-libharfbuzz0b_10.2.0-1_armhf.deb ... 290s Unpacking libharfbuzz0b:armhf (10.2.0-1) ... 290s Selecting previously unselected package libhtscodecs2:armhf. 290s Preparing to unpack .../18-libhtscodecs2_1.6.1-2_armhf.deb ... 290s Unpacking libhtscodecs2:armhf (1.6.1-2) ... 290s Selecting previously unselected package libhts3t64:armhf. 290s Preparing to unpack .../19-libhts3t64_1.21+ds-1_armhf.deb ... 290s Unpacking libhts3t64:armhf (1.21+ds-1) ... 290s Selecting previously unselected package x11-common. 290s Preparing to unpack .../20-x11-common_1%3a7.7+23ubuntu3_all.deb ... 290s Unpacking x11-common (1:7.7+23ubuntu3) ... 290s Selecting previously unselected package libice6:armhf. 290s Preparing to unpack .../21-libice6_2%3a1.1.1-1_armhf.deb ... 290s Unpacking libice6:armhf (2:1.1.1-1) ... 290s Selecting previously unselected package libjpeg-turbo8:armhf. 290s Preparing to unpack .../22-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 290s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 290s Selecting previously unselected package libjpeg8:armhf. 290s Preparing to unpack .../23-libjpeg8_8c-2ubuntu11_armhf.deb ... 290s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 290s Selecting previously unselected package liblapack3:armhf. 290s Preparing to unpack .../24-liblapack3_3.12.1-2_armhf.deb ... 290s Unpacking liblapack3:armhf (3.12.1-2) ... 290s Selecting previously unselected package liblerc4:armhf. 290s Preparing to unpack .../25-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 290s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 290s Selecting previously unselected package libthai-data. 290s Preparing to unpack .../26-libthai-data_0.1.29-2build1_all.deb ... 290s Unpacking libthai-data (0.1.29-2build1) ... 290s Selecting previously unselected package libthai0:armhf. 290s Preparing to unpack .../27-libthai0_0.1.29-2build1_armhf.deb ... 290s Unpacking libthai0:armhf (0.1.29-2build1) ... 290s Selecting previously unselected package libpango-1.0-0:armhf. 290s Preparing to unpack .../28-libpango-1.0-0_1.56.1-1_armhf.deb ... 290s Unpacking libpango-1.0-0:armhf (1.56.1-1) ... 290s Selecting previously unselected package libpangoft2-1.0-0:armhf. 290s Preparing to unpack .../29-libpangoft2-1.0-0_1.56.1-1_armhf.deb ... 290s Unpacking libpangoft2-1.0-0:armhf (1.56.1-1) ... 290s Selecting previously unselected package libpangocairo-1.0-0:armhf. 290s Preparing to unpack .../30-libpangocairo-1.0-0_1.56.1-1_armhf.deb ... 290s Unpacking libpangocairo-1.0-0:armhf (1.56.1-1) ... 291s Selecting previously unselected package libpaper2:armhf. 291s Preparing to unpack .../31-libpaper2_2.2.5-0.3_armhf.deb ... 291s Unpacking libpaper2:armhf (2.2.5-0.3) ... 291s Selecting previously unselected package libpaper-utils. 291s Preparing to unpack .../32-libpaper-utils_2.2.5-0.3_armhf.deb ... 291s Unpacking libpaper-utils (2.2.5-0.3) ... 291s Selecting previously unselected package libsharpyuv0:armhf. 291s Preparing to unpack .../33-libsharpyuv0_1.5.0-0.1_armhf.deb ... 291s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 291s Selecting previously unselected package libsm6:armhf. 291s Preparing to unpack .../34-libsm6_2%3a1.2.4-1_armhf.deb ... 291s Unpacking libsm6:armhf (2:1.2.4-1) ... 291s Selecting previously unselected package libtcl8.6:armhf. 291s Preparing to unpack .../35-libtcl8.6_8.6.16+dfsg-1_armhf.deb ... 291s Unpacking libtcl8.6:armhf (8.6.16+dfsg-1) ... 291s Selecting previously unselected package libjbig0:armhf. 291s Preparing to unpack .../36-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 291s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 291s Selecting previously unselected package libwebp7:armhf. 291s Preparing to unpack .../37-libwebp7_1.5.0-0.1_armhf.deb ... 291s Unpacking libwebp7:armhf (1.5.0-0.1) ... 291s Selecting previously unselected package libtiff6:armhf. 291s Preparing to unpack .../38-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 291s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 291s Selecting previously unselected package libxft2:armhf. 291s Preparing to unpack .../39-libxft2_2.3.6-1build1_armhf.deb ... 291s Unpacking libxft2:armhf (2.3.6-1build1) ... 291s Selecting previously unselected package libxss1:armhf. 291s Preparing to unpack .../40-libxss1_1%3a1.2.3-1build3_armhf.deb ... 291s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 291s Selecting previously unselected package libtk8.6:armhf. 291s Preparing to unpack .../41-libtk8.6_8.6.16-1_armhf.deb ... 291s Unpacking libtk8.6:armhf (8.6.16-1) ... 291s Selecting previously unselected package libxt6t64:armhf. 291s Preparing to unpack .../42-libxt6t64_1%3a1.2.1-1.2build1_armhf.deb ... 291s Unpacking libxt6t64:armhf (1:1.2.1-1.2build1) ... 291s Selecting previously unselected package zip. 291s Preparing to unpack .../43-zip_3.0-14ubuntu2_armhf.deb ... 291s Unpacking zip (3.0-14ubuntu2) ... 291s Selecting previously unselected package unzip. 291s Preparing to unpack .../44-unzip_6.0-28ubuntu6_armhf.deb ... 291s Unpacking unzip (6.0-28ubuntu6) ... 291s Selecting previously unselected package xdg-utils. 291s Preparing to unpack .../45-xdg-utils_1.2.1-2ubuntu1_all.deb ... 291s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 291s Selecting previously unselected package r-base-core. 291s Preparing to unpack .../46-r-base-core_4.4.3-1_armhf.deb ... 291s Unpacking r-base-core (4.4.3-1) ... 291s Selecting previously unselected package vt. 292s Preparing to unpack .../47-vt_0.57721+ds-3build2_armhf.deb ... 292s Unpacking vt (0.57721+ds-3build2) ... 292s Selecting previously unselected package vt-examples. 292s Preparing to unpack .../48-vt-examples_0.57721+ds-3build2_all.deb ... 292s Unpacking vt-examples (0.57721+ds-3build2) ... 292s Setting up libhtscodecs2:armhf (1.6.1-2) ... 292s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 292s Setting up libpixman-1-0:armhf (0.44.0-3) ... 292s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 292s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 292s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 292s Setting up libdatrie1:armhf (0.2.13-3build1) ... 292s Setting up libxcb-render0:armhf (1.17.0-2) ... 292s Setting up unzip (6.0-28ubuntu6) ... 292s Setting up x11-common (1:7.7+23ubuntu3) ... 292s Setting up libdeflate0:armhf (1.23-1) ... 292s Setting up libxcb-shm0:armhf (1.17.0-2) ... 292s Setting up libgomp1:armhf (15-20250222-0ubuntu1) ... 292s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 292s Setting up zip (3.0-14ubuntu2) ... 292s Setting up libblas3:armhf (3.12.1-2) ... 292s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 292s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 292s Setting up fonts-dejavu-mono (2.37-8) ... 292s Setting up libtcl8.6:armhf (8.6.16+dfsg-1) ... 292s Setting up fonts-dejavu-core (2.37-8) ... 292s Setting up libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 292s Setting up libgfortran5:armhf (15-20250222-0ubuntu1) ... 292s Setting up libwebp7:armhf (1.5.0-0.1) ... 292s Setting up libhts3t64:armhf (1.21+ds-1) ... 292s Setting up libharfbuzz0b:armhf (10.2.0-1) ... 292s Setting up libthai-data (0.1.29-2build1) ... 292s Setting up vt-examples (0.57721+ds-3build2) ... 292s Setting up libxss1:armhf (1:1.2.3-1build3) ... 292s Setting up libpaper2:armhf (2.2.5-0.3) ... 292s Setting up xdg-utils (1.2.1-2ubuntu1) ... 292s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 292s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 292s Setting up libice6:armhf (2:1.1.1-1) ... 292s Setting up liblapack3:armhf (3.12.1-2) ... 292s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 292s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 292s Setting up libpaper-utils (2.2.5-0.3) ... 292s Setting up libthai0:armhf (0.1.29-2build1) ... 292s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 292s Setting up libfontconfig1:armhf (2.15.0-2ubuntu1) ... 292s Setting up libsm6:armhf (2:1.2.4-1) ... 292s Setting up fontconfig (2.15.0-2ubuntu1) ... 294s Regenerating fonts cache... done. 294s Setting up libxft2:armhf (2.3.6-1build1) ... 294s Setting up libtk8.6:armhf (8.6.16-1) ... 294s Setting up libpango-1.0-0:armhf (1.56.1-1) ... 294s Setting up libcairo2:armhf (1.18.2-2) ... 294s Setting up libxt6t64:armhf (1:1.2.1-1.2build1) ... 294s Setting up libpangoft2-1.0-0:armhf (1.56.1-1) ... 294s Setting up libpangocairo-1.0-0:armhf (1.56.1-1) ... 294s Setting up r-base-core (4.4.3-1) ... 295s Creating config file /etc/R/Renviron with new version 295s Setting up vt (0.57721+ds-3build2) ... 295s Processing triggers for man-db (2.13.0-1) ... 296s Processing triggers for install-info (7.1.1-1) ... 296s Processing triggers for libc-bin (2.41-1ubuntu2) ... 305s autopkgtest [11:28:49]: test basic: [----------------------- 307s Help page on http://statgen.sph.umich.edu/wiki/Vt 307s autopkgtest [11:28:51]: test basic: -----------------------] 311s basic PASS 311s autopkgtest [11:28:55]: test basic: - - - - - - - - - - results - - - - - - - - - - 315s autopkgtest [11:28:59]: test run-unit-test: preparing testbed 317s Reading package lists... 317s Building dependency tree... 317s Reading state information... 318s Starting pkgProblemResolver with broken count: 0 318s Starting 2 pkgProblemResolver with broken count: 0 318s Done 319s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 328s autopkgtest [11:29:12]: test run-unit-test: [----------------------- 330s ++++++++++++++++++++++ 330s Tests for vt normalize 330s ++++++++++++++++++++++ 330s testing normalize 330s +++++++++++++++++++++++++++++++ 330s Tests for vt decompose_blocksub 330s +++++++++++++++++++++++++++++++ 330s output VCF file : ok 330s output logs : ok 330s testing decompose_blocksub of even-length blocks 330s output VCF file : ok 330s output logs : ok 330s testing decompose_blocksub with alignment 330s output VCF file : ok 330s output logs : ok 330s testing decompose_blocksub of phased even-length blocks 330s ++++++++++++++++++++++ 330s Tests for vt decompose 330s ++++++++++++++++++++++ 330s output VCF file : ok 330s output logs : ok 330s testing decompose for a triallelic variant 330s output VCF file : ok 330s output logs : ok 330s 330s Passed tests : 5 / 5 331s autopkgtest [11:29:15]: test run-unit-test: -----------------------] 334s autopkgtest [11:29:18]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 334s run-unit-test PASS 338s autopkgtest [11:29:22]: @@@@@@@@@@@@@@@@@@@@ summary 338s basic PASS 338s run-unit-test PASS