0s autopkgtest [18:17:18]: starting date and time: 2025-03-15 18:17:18+0000 0s autopkgtest [18:17:18]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [18:17:18]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.vwvhzocu/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade vmatch --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.197 lxd-armhf-10.145.243.197:autopkgtest/ubuntu/plucky/armhf 21s autopkgtest [18:17:39]: testbed dpkg architecture: armhf 23s autopkgtest [18:17:41]: testbed apt version: 2.9.33 27s autopkgtest [18:17:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 29s autopkgtest [18:17:47]: testbed release detected to be: None 37s autopkgtest [18:17:55]: updating testbed package index (apt update) 39s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 40s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 40s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 40s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 40s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 40s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 40s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 41s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [114 kB] 41s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1832 B] 41s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 41s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [312 kB] 41s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [11.1 kB] 41s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 41s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 41s Get:15 http://ftpmaster.internal/ubuntu plucky/main Sources [1394 kB] 43s Get:16 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 43s Get:17 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 63s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 65s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 65s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 65s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 78s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 80s Fetched 41.0 MB in 40s (1020 kB/s) 81s Reading package lists... 87s autopkgtest [18:18:45]: upgrading testbed (apt dist-upgrade and autopurge) 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 90s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 90s Starting 2 pkgProblemResolver with broken count: 0 90s Done 90s Entering ResolveByKeep 91s 91s Calculating upgrade... 91s The following packages will be upgraded: 91s libc-bin libc6 locales pinentry-curses python3-jinja2 sos strace 91s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 91s Need to get 8683 kB of archives. 91s After this operation, 23.6 kB of additional disk space will be used. 91s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 95s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 95s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 99s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 99s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 99s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 99s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 100s Preconfiguring packages ... 100s Fetched 8683 kB in 8s (1058 kB/s) 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 100s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 100s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 101s Setting up libc6:armhf (2.41-1ubuntu2) ... 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 101s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 101s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 101s Setting up libc-bin (2.41-1ubuntu2) ... 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 101s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 101s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 101s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 101s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 101s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 101s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 101s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 101s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 102s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 102s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 102s Setting up sos (4.9.0-5) ... 103s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 103s Setting up locales (2.41-1ubuntu2) ... 103s Generating locales (this might take a while)... 105s en_US.UTF-8... done 105s Generation complete. 105s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 105s Setting up strace (6.13+ds-1ubuntu1) ... 105s Processing triggers for man-db (2.13.0-1) ... 107s Processing triggers for systemd (257.3-1ubuntu3) ... 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 110s Starting pkgProblemResolver with broken count: 0 110s Starting 2 pkgProblemResolver with broken count: 0 110s Done 110s Solving dependencies... 111s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s autopkgtest [18:19:11]: rebooting testbed after setup commands that affected boot 164s autopkgtest [18:20:02]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 192s autopkgtest [18:20:30]: @@@@@@@@@@@@@@@@@@@@ apt-source vmatch 209s Get:1 http://ftpmaster.internal/ubuntu plucky/universe vmatch 2.3.1+dfsg-9 (dsc) [2074 B] 209s Get:2 http://ftpmaster.internal/ubuntu plucky/universe vmatch 2.3.1+dfsg-9 (tar) [2121 kB] 209s Get:3 http://ftpmaster.internal/ubuntu plucky/universe vmatch 2.3.1+dfsg-9 (diff) [79.6 kB] 209s gpgv: Signature made Fri Dec 15 12:41:29 2023 UTC 209s gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 209s gpgv: Can't check signature: No public key 209s dpkg-source: warning: cannot verify inline signature for ./vmatch_2.3.1+dfsg-9.dsc: no acceptable signature found 209s autopkgtest [18:20:47]: testing package vmatch version 2.3.1+dfsg-9 211s autopkgtest [18:20:49]: build not needed 218s autopkgtest [18:20:56]: test run-example: preparing testbed 220s Reading package lists... 221s Building dependency tree... 221s Reading state information... 221s Starting pkgProblemResolver with broken count: 0 221s Starting 2 pkgProblemResolver with broken count: 0 221s Done 222s The following NEW packages will be installed: 222s libvmatch-dev vmatch 222s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 222s Need to get 1102 kB of archives. 222s After this operation, 4999 kB of additional disk space will be used. 222s Get:1 http://ftpmaster.internal/ubuntu plucky/universe armhf libvmatch-dev armhf 2.3.1+dfsg-9 [686 kB] 223s Get:2 http://ftpmaster.internal/ubuntu plucky/universe armhf vmatch armhf 2.3.1+dfsg-9 [417 kB] 223s Fetched 1102 kB in 1s (996 kB/s) 223s Selecting previously unselected package libvmatch-dev. 223s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 223s Preparing to unpack .../libvmatch-dev_2.3.1+dfsg-9_armhf.deb ... 223s Unpacking libvmatch-dev (2.3.1+dfsg-9) ... 223s Selecting previously unselected package vmatch. 223s Preparing to unpack .../vmatch_2.3.1+dfsg-9_armhf.deb ... 223s Unpacking vmatch (2.3.1+dfsg-9) ... 223s Setting up libvmatch-dev (2.3.1+dfsg-9) ... 223s Setting up vmatch (2.3.1+dfsg-9) ... 223s Processing triggers for man-db (2.13.0-1) ... 235s autopkgtest [18:21:13]: test run-example: [----------------------- 237s reading file "U89959_genomic.fas" 237s for this input size and alphabet size, the maximal prefixlength 237s (argument of option -pl) is 7, 237s the recommended prefixlength is 6 237s total length of sequences: 106973 237s alphabet "aAcCgGtTuUnsywrkvbdhmNSYWRKVBDHM" (size 32) mapped to "acgtn" (size 5) 237s create file "U89959_genomic.fas.tis" 237s create file "U89959_genomic.fas.ois" 237s create file "U89959_genomic.fas.des" 237s create file "U89959_genomic.fas.sds" 237s create file "U89959_genomic.fas.lcp" 237s initializing data structures 237s sorting suffixes according to prefix of length 6 237s sorting all buckets 237s create file "U89959_genomic.fas.llv" 237s create file "U89959_genomic.fas.bck" 237s create file "U89959_genomic.fas.suf" 237s create file "U89959_genomic.fas.sti1" 237s create file "U89959_genomic.fas.bwt" 237s create file "U89959_genomic.fas.prj" 237s create file "U89959_genomic.fas.al1" 237s create file "U89959_genomic.fas.skp" 237s overall space peak: main=0.68 MB (6.69 bytes/symbol), secondary=0.21 MB 238s autopkgtest [18:21:16]: test run-example: -----------------------] 242s run-example PASS 242s autopkgtest [18:21:20]: test run-example: - - - - - - - - - - results - - - - - - - - - - 246s autopkgtest [18:21:24]: @@@@@@@@@@@@@@@@@@@@ summary 246s run-example PASS