0s autopkgtest [18:16:13]: starting date and time: 2025-03-15 18:16:13+0000 0s autopkgtest [18:16:13]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [18:16:13]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8hkffafy/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade velvet --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.76 lxd-armhf-10.145.243.76:autopkgtest/ubuntu/plucky/armhf 21s autopkgtest [18:16:34]: testbed dpkg architecture: armhf 23s autopkgtest [18:16:36]: testbed apt version: 2.9.33 26s autopkgtest [18:16:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup 28s autopkgtest [18:16:41]: testbed release detected to be: None 36s autopkgtest [18:16:49]: updating testbed package index (apt update) 37s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 38s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 39s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 39s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 39s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 40s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 40s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 40s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [114 kB] 40s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1832 B] 40s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 40s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [312 kB] 40s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [11.1 kB] 40s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 40s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 40s Get:15 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 58s Get:16 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 59s Get:17 http://ftpmaster.internal/ubuntu plucky/main Sources [1394 kB] 60s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 61s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 61s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 61s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 71s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 72s Fetched 41.0 MB in 35s (1174 kB/s) 74s Reading package lists... 79s autopkgtest [18:17:32]: upgrading testbed (apt dist-upgrade and autopurge) 82s Reading package lists... 82s Building dependency tree... 82s Reading state information... 82s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 82s Starting 2 pkgProblemResolver with broken count: 0 82s Done 83s Entering ResolveByKeep 84s 84s Calculating upgrade... 84s The following packages will be upgraded: 84s libc-bin libc6 locales pinentry-curses python3-jinja2 sos strace 84s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 84s Need to get 8683 kB of archives. 84s After this operation, 23.6 kB of additional disk space will be used. 84s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 87s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 87s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 91s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 92s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 92s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 92s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 93s Preconfiguring packages ... 93s Fetched 8683 kB in 8s (1075 kB/s) 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 93s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 93s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 93s Setting up libc6:armhf (2.41-1ubuntu2) ... 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 94s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 94s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 94s Setting up libc-bin (2.41-1ubuntu2) ... 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 94s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 94s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 94s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 94s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 94s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 94s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 94s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 94s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 94s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 95s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 95s Setting up sos (4.9.0-5) ... 95s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 95s Setting up locales (2.41-1ubuntu2) ... 96s Generating locales (this might take a while)... 98s en_US.UTF-8... done 98s Generation complete. 98s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 98s Setting up strace (6.13+ds-1ubuntu1) ... 98s Processing triggers for man-db (2.13.0-1) ... 99s Processing triggers for systemd (257.3-1ubuntu3) ... 102s Reading package lists... 102s Building dependency tree... 102s Reading state information... 103s Starting pkgProblemResolver with broken count: 0 103s Starting 2 pkgProblemResolver with broken count: 0 103s Done 103s Solving dependencies... 104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s autopkgtest [18:17:59]: rebooting testbed after setup commands that affected boot 146s autopkgtest [18:18:39]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 171s autopkgtest [18:19:04]: @@@@@@@@@@@@@@@@@@@@ apt-source velvet 209s Get:1 http://ftpmaster.internal/ubuntu plucky/universe velvet 1.2.10+dfsg1-9 (dsc) [2393 B] 209s Get:2 http://ftpmaster.internal/ubuntu plucky/universe velvet 1.2.10+dfsg1-9 (tar) [13.6 MB] 209s Get:3 http://ftpmaster.internal/ubuntu plucky/universe velvet 1.2.10+dfsg1-9 (diff) [18.5 kB] 209s gpgv: Signature made Wed Aug 7 10:20:32 2024 UTC 209s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 209s gpgv: issuer "emollier@debian.org" 209s gpgv: Can't check signature: No public key 209s dpkg-source: warning: cannot verify inline signature for ./velvet_1.2.10+dfsg1-9.dsc: no acceptable signature found 209s autopkgtest [18:19:42]: testing package velvet version 1.2.10+dfsg1-9 215s autopkgtest [18:19:48]: build not needed 219s autopkgtest [18:19:52]: test run-unit-test: preparing testbed 221s Reading package lists... 221s Building dependency tree... 221s Reading state information... 221s Starting pkgProblemResolver with broken count: 0 221s Starting 2 pkgProblemResolver with broken count: 0 221s Done 222s The following NEW packages will be installed: 222s libgomp1 velvet velvet-example velvet-long velvet-tests 222s 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. 222s Need to get 15.1 MB of archives. 222s After this operation, 16.9 MB of additional disk space will be used. 222s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 15-20250222-0ubuntu1 [128 kB] 223s Get:2 http://ftpmaster.internal/ubuntu plucky/universe armhf velvet armhf 1.2.10+dfsg1-9 [672 kB] 223s Get:3 http://ftpmaster.internal/ubuntu plucky/universe armhf velvet-tests all 1.2.10+dfsg1-9 [10.7 MB] 231s Get:4 http://ftpmaster.internal/ubuntu plucky/universe armhf velvet-example all 1.2.10+dfsg1-9 [3375 kB] 234s Get:5 http://ftpmaster.internal/ubuntu plucky/universe armhf velvet-long armhf 1.2.10+dfsg1-9 [222 kB] 234s Fetched 15.1 MB in 12s (1305 kB/s) 234s Selecting previously unselected package libgomp1:armhf. 234s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 234s Preparing to unpack .../libgomp1_15-20250222-0ubuntu1_armhf.deb ... 234s Unpacking libgomp1:armhf (15-20250222-0ubuntu1) ... 234s Selecting previously unselected package velvet. 234s Preparing to unpack .../velvet_1.2.10+dfsg1-9_armhf.deb ... 234s Unpacking velvet (1.2.10+dfsg1-9) ... 234s Selecting previously unselected package velvet-tests. 234s Preparing to unpack .../velvet-tests_1.2.10+dfsg1-9_all.deb ... 234s Unpacking velvet-tests (1.2.10+dfsg1-9) ... 235s Selecting previously unselected package velvet-example. 235s Preparing to unpack .../velvet-example_1.2.10+dfsg1-9_all.deb ... 235s Unpacking velvet-example (1.2.10+dfsg1-9) ... 235s Selecting previously unselected package velvet-long. 235s Preparing to unpack .../velvet-long_1.2.10+dfsg1-9_armhf.deb ... 235s Unpacking velvet-long (1.2.10+dfsg1-9) ... 235s Setting up libgomp1:armhf (15-20250222-0ubuntu1) ... 235s Setting up velvet (1.2.10+dfsg1-9) ... 235s Setting up velvet-tests (1.2.10+dfsg1-9) ... 235s Setting up velvet-long (1.2.10+dfsg1-9) ... 235s Setting up velvet-example (1.2.10+dfsg1-9) ... 235s Processing triggers for man-db (2.13.0-1) ... 235s Processing triggers for libc-bin (2.41-1ubuntu2) ... 253s autopkgtest [18:20:26]: test run-unit-test: [----------------------- 255s [Sat Mar 15 18:20:28 2025] Running Velvet Test Suite 255s [Sat Mar 15 18:20:28 2025] Found /usr/bin/velveth, ok 255s [Sat Mar 15 18:20:28 2025] Found /usr/bin/velvetg, ok 255s [Sat Mar 15 18:20:28 2025] Found Sequences.31, ok 255s [Sat Mar 15 18:20:28 2025] Found Roadmaps.31, ok 255s [Sat Mar 15 18:20:28 2025] Found read1.fq.gz, ok 255s [Sat Mar 15 18:20:28 2025] Found read2.fq.gz, ok 255s [Sat Mar 15 18:20:28 2025] Found reads.fq.gz, ok 255s [Sat Mar 15 18:20:28 2025] Found read1.fa.gz, ok 255s [Sat Mar 15 18:20:28 2025] Found read2.fa.gz, ok 255s [Sat Mar 15 18:20:28 2025] Found reads.fa.gz, ok 255s [Sat Mar 15 18:20:28 2025] making test folder: velvet.test.LHTpbl 255s [Sat Mar 15 18:20:28 2025] running test 1 of 5: fasta_eq_fastq_ascii.t 257s [Sat Mar 15 18:20:30 2025] ok 257s [Sat Mar 15 18:20:30 2025] ok 257s [Sat Mar 15 18:20:30 2025] ok 257s [Sat Mar 15 18:20:30 2025] ok 257s [Sat Mar 15 18:20:30 2025] passed test 1 257s [Sat Mar 15 18:20:30 2025] running test 2 of 5: fasta_eq_fastq_binary.t 258s [Sat Mar 15 18:20:31 2025] ok 258s [Sat Mar 15 18:20:31 2025] ok 258s [Sat Mar 15 18:20:31 2025] passed test 2 258s [Sat Mar 15 18:20:31 2025] running test 3 of 5: fmt_auto_mode.t 260s [Sat Mar 15 18:20:33 2025] ok 260s [Sat Mar 15 18:20:33 2025] ok 260s [Sat Mar 15 18:20:33 2025] passed test 3 260s [Sat Mar 15 18:20:33 2025] running test 4 of 5: interleaved_eq_separate.t 263s [Sat Mar 15 18:20:36 2025] ok 263s [Sat Mar 15 18:20:36 2025] ok 263s [Sat Mar 15 18:20:36 2025] passed test 4 263s [Sat Mar 15 18:20:36 2025] running test 5 of 5: mismatched_separates.t 263s [Sat Mar 15 18:20:36 2025] ok 263s [Sat Mar 15 18:20:36 2025] ok 263s [Sat Mar 15 18:20:36 2025] passed test 5 263s [Sat Mar 15 18:20:36 2025] removing test folder: velvet.test.LHTpbl 263s [Sat Mar 15 18:20:36 2025] passed all 5 tests 263s [Sat Mar 15 18:20:36 2025] hooray! 264s autopkgtest [18:20:37]: test run-unit-test: -----------------------] 268s autopkgtest [18:20:41]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 268s run-unit-test PASS 273s autopkgtest [18:20:46]: @@@@@@@@@@@@@@@@@@@@ summary 273s run-unit-test PASS