0s autopkgtest [17:01:19]: starting date and time: 2025-03-15 17:01:19+0000 0s autopkgtest [17:01:19]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:01:19]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5q5p_lzi/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade unikmer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.149 lxd-armhf-10.145.243.149:autopkgtest/ubuntu/plucky/armhf 26s autopkgtest [17:01:45]: testbed dpkg architecture: armhf 29s autopkgtest [17:01:48]: testbed apt version: 2.9.33 37s autopkgtest [17:01:56]: @@@@@@@@@@@@@@@@@@@@ test bed setup 40s autopkgtest [17:01:59]: testbed release detected to be: None 49s autopkgtest [17:02:08]: updating testbed package index (apt update) 50s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 51s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 51s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 51s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 52s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 52s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 52s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 52s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [114 kB] 52s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1832 B] 52s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 52s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [312 kB] 53s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [11.1 kB] 53s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 53s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 53s Get:15 http://ftpmaster.internal/ubuntu plucky/main Sources [1394 kB] 54s Get:16 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 55s Get:17 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 77s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 78s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 78s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 78s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 94s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 96s Fetched 41.0 MB in 45s (913 kB/s) 97s Reading package lists... 102s autopkgtest [17:03:01]: upgrading testbed (apt dist-upgrade and autopurge) 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 105s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 105s Starting 2 pkgProblemResolver with broken count: 0 105s Done 106s Entering ResolveByKeep 106s 106s Calculating upgrade... 107s The following packages will be upgraded: 107s libc-bin libc6 locales pinentry-curses python3-jinja2 sos strace 107s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s Need to get 8683 kB of archives. 107s After this operation, 23.6 kB of additional disk space will be used. 107s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 111s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 112s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 118s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 119s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 119s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 119s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 120s Preconfiguring packages ... 120s Fetched 8683 kB in 13s (685 kB/s) 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 120s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 120s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 121s Setting up libc6:armhf (2.41-1ubuntu2) ... 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 121s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 121s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 121s Setting up libc-bin (2.41-1ubuntu2) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 122s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 122s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 122s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 122s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 122s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 122s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 122s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 122s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 122s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 122s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 122s Setting up sos (4.9.0-5) ... 123s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 123s Setting up locales (2.41-1ubuntu2) ... 124s Generating locales (this might take a while)... 125s en_US.UTF-8... done 125s Generation complete. 126s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 126s Setting up strace (6.13+ds-1ubuntu1) ... 126s Processing triggers for man-db (2.13.0-1) ... 127s Processing triggers for systemd (257.3-1ubuntu3) ... 129s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s Starting pkgProblemResolver with broken count: 0 130s Starting 2 pkgProblemResolver with broken count: 0 130s Done 131s Solving dependencies... 131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s autopkgtest [17:03:32]: rebooting testbed after setup commands that affected boot 173s autopkgtest [17:04:12]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 199s autopkgtest [17:04:38]: @@@@@@@@@@@@@@@@@@@@ apt-source unikmer 213s Get:1 http://ftpmaster.internal/ubuntu plucky/universe unikmer 0.20.0-1 (dsc) [2144 B] 213s Get:2 http://ftpmaster.internal/ubuntu plucky/universe unikmer 0.20.0-1 (tar) [4228 kB] 213s Get:3 http://ftpmaster.internal/ubuntu plucky/universe unikmer 0.20.0-1 (diff) [5560 B] 214s gpgv: Signature made Sat Jul 6 09:00:41 2024 UTC 214s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 214s gpgv: Can't check signature: No public key 214s dpkg-source: warning: cannot verify inline signature for ./unikmer_0.20.0-1.dsc: no acceptable signature found 214s autopkgtest [17:04:53]: testing package unikmer version 0.20.0-1 216s autopkgtest [17:04:55]: build not needed 218s autopkgtest [17:04:57]: test run-unit-test: preparing testbed 220s Reading package lists... 220s Building dependency tree... 220s Reading state information... 220s Starting pkgProblemResolver with broken count: 0 220s Starting 2 pkgProblemResolver with broken count: 0 220s Done 221s The following NEW packages will be installed: 221s unikmer 221s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 221s Need to get 2892 kB of archives. 221s After this operation, 8963 kB of additional disk space will be used. 221s Get:1 http://ftpmaster.internal/ubuntu plucky/universe armhf unikmer armhf 0.20.0-1 [2892 kB] 225s Fetched 2892 kB in 4s (735 kB/s) 226s Selecting previously unselected package unikmer. 226s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 226s Preparing to unpack .../unikmer_0.20.0-1_armhf.deb ... 226s Unpacking unikmer (0.20.0-1) ... 226s Setting up unikmer (0.20.0-1) ... 226s Processing triggers for man-db (2.13.0-1) ... 235s autopkgtest [17:05:14]: test run-unit-test: [----------------------- 237s Test 1 - counting and assigning taxid 237s 17:05:16.144 [INFO] flag -s/--sort overides -c/--compact 239s 17:05:18.855 [INFO] flag -s/--sort overides -c/--compact 242s 17:05:21.341 [INFO] flag -s/--sort overides -c/--compact 243s ================================= 243s PASS 243s Test 2 - view taxid 243s AAAAAAAAACCATCCAAATCTGG 511145 243s AAAAAAAAACCGCTAGTATATTC 511145 243s AAAAAAAAACCTGAAAAAAACGG 511145 243s ================================== 243s PASS 243s Test 3 - check stats 243s file k canonical hashed scaled include-taxid global-taxid sorted compact gzipped version number description 243s A.muciniphila-ATCC_BAA-835.fasta.gz.sorted.unik 23 ✓ ✕ ✕ ✕ 349741 ✓ ✕ ✓ v5.0 2,630,905 243s Ecoli-IAI39.fasta.gz.k23.sorted.unik 23 ✓ ✕ ✕ ✕ 585057 ✓ ✕ ✓ v5.0 4,902,266 243s Ecoli-MG1655.fasta.gz.k23.sorted.unik 23 ✓ ✕ ✕ ✕ 511145 ✓ ✕ ✓ v5.0 4,546,632 243s ================================== 243s PASS 244s autopkgtest [17:05:23]: test run-unit-test: -----------------------] 247s autopkgtest [17:05:26]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 247s run-unit-test PASS 251s autopkgtest [17:05:30]: @@@@@@@@@@@@@@@@@@@@ summary 251s run-unit-test PASS