0s autopkgtest [18:08:57]: starting date and time: 2025-03-15 18:08:57+0000
  0s autopkgtest [18:08:57]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [18:08:57]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.d42jc1mr/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade uc-echo --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.254 lxd-armhf-10.145.243.254:autopkgtest/ubuntu/plucky/armhf
 20s autopkgtest [18:09:17]: testbed dpkg architecture: armhf
 22s autopkgtest [18:09:19]: testbed apt version: 2.9.33
 25s autopkgtest [18:09:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 27s autopkgtest [18:09:24]: testbed release detected to be: None
 35s autopkgtest [18:09:32]: updating testbed package index (apt update)
 37s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
 37s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB]
 37s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB]
 37s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB]
 38s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
 38s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
 38s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
 38s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [114 kB]
 38s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1832 B]
 38s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B]
 38s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [312 kB]
 38s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [11.1 kB]
 38s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B]
 38s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B]
 38s Get:15 http://ftpmaster.internal/ubuntu plucky/main Sources [1394 kB]
 39s Get:16 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB]
 59s Get:17 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB]
 59s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB]
 60s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB]
 60s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B]
 60s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB]
 75s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB]
 77s Fetched 41.0 MB in 40s (1022 kB/s)
 78s Reading package lists...
 87s autopkgtest [18:10:24]: upgrading testbed (apt dist-upgrade and autopurge)
 89s Reading package lists...
 90s Building dependency tree...
 90s Reading state information...
 91s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 91s Starting 2 pkgProblemResolver with broken count: 0
 91s Done
 92s Entering ResolveByKeep
 92s 
 92s Calculating upgrade...
 93s The following packages will be upgraded:
 93s   libc-bin libc6 locales pinentry-curses python3-jinja2 sos strace
 93s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 93s Need to get 8683 kB of archives.
 93s After this operation, 23.6 kB of additional disk space will be used.
 93s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB]
 97s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB]
 98s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB]
103s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB]
103s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB]
103s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
103s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB]
104s Preconfiguring packages ...
105s Fetched 8683 kB in 11s (796 kB/s)
105s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 64655 files and directories currently installed.)
105s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ...
105s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
105s Setting up libc6:armhf (2.41-1ubuntu2) ...
105s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 64655 files and directories currently installed.)
105s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ...
105s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
106s Setting up libc-bin (2.41-1ubuntu2) ...
106s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 64655 files and directories currently installed.)
106s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
106s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
106s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ...
106s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
106s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ...
106s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
106s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
107s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
107s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ...
107s Unpacking sos (4.9.0-5) over (4.9.0-4) ...
107s Setting up sos (4.9.0-5) ...
108s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
108s Setting up locales (2.41-1ubuntu2) ...
109s Generating locales (this might take a while)...
111s   en_US.UTF-8... done
111s Generation complete.
111s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
111s Setting up strace (6.13+ds-1ubuntu1) ...
111s Processing triggers for man-db (2.13.0-1) ...
113s Processing triggers for systemd (257.3-1ubuntu3) ...
115s Reading package lists...
116s Building dependency tree...
116s Reading state information...
116s Starting pkgProblemResolver with broken count: 0
116s Starting 2 pkgProblemResolver with broken count: 0
116s Done
117s Solving dependencies...
117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
119s autopkgtest [18:10:56]: rebooting testbed after setup commands that affected boot
160s autopkgtest [18:11:37]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2
185s autopkgtest [18:12:02]: @@@@@@@@@@@@@@@@@@@@ apt-source uc-echo
196s Get:1 http://ftpmaster.internal/ubuntu plucky/universe uc-echo 1.12-19 (dsc) [2113 B]
196s Get:2 http://ftpmaster.internal/ubuntu plucky/universe uc-echo 1.12-19 (tar) [461 kB]
196s Get:3 http://ftpmaster.internal/ubuntu plucky/universe uc-echo 1.12-19 (diff) [8988 B]
196s gpgv: Signature made Wed Jun  5 12:30:13 2024 UTC
196s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
196s gpgv:                issuer "tille@debian.org"
196s gpgv: Can't check signature: No public key
196s dpkg-source: warning: cannot verify inline signature for ./uc-echo_1.12-19.dsc: no acceptable signature found
196s autopkgtest [18:12:13]: testing package uc-echo version 1.12-19
198s autopkgtest [18:12:15]: build not needed
200s autopkgtest [18:12:17]: test runtest: preparing testbed
202s Reading package lists...
203s Building dependency tree...
203s Reading state information...
203s Starting pkgProblemResolver with broken count: 0
203s Starting 2 pkgProblemResolver with broken count: 0
203s Done
204s The following NEW packages will be installed:
204s   libblas3 libgfortran5 liblapack3 liblbfgsb0 python3-decorator python3-numpy
204s   python3-numpy-dev python3-scipy uc-echo
204s 0 upgraded, 9 newly installed, 0 to remove and 0 not upgraded.
204s Need to get 23.2 MB of archives.
204s After this operation, 85.8 MB of additional disk space will be used.
204s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy-dev armhf 1:2.2.3+ds-5 [141 kB]
204s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.1-2 [132 kB]
205s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 15-20250222-0ubuntu1 [330 kB]
205s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.1-2 [2091 kB]
207s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:2.2.3+ds-5 [3725 kB]
211s Get:6 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB]
211s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB]
211s Get:8 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.14.1-4ubuntu2 [16.7 MB]
227s Get:9 http://ftpmaster.internal/ubuntu plucky/universe armhf uc-echo armhf 1.12-19 [73.0 kB]
228s Fetched 23.2 MB in 23s (1016 kB/s)
228s Selecting previously unselected package python3-numpy-dev:armhf.
228s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 64655 files and directories currently installed.)
228s Preparing to unpack .../0-python3-numpy-dev_1%3a2.2.3+ds-5_armhf.deb ...
228s Unpacking python3-numpy-dev:armhf (1:2.2.3+ds-5) ...
228s Selecting previously unselected package libblas3:armhf.
228s Preparing to unpack .../1-libblas3_3.12.1-2_armhf.deb ...
228s Unpacking libblas3:armhf (3.12.1-2) ...
228s Selecting previously unselected package libgfortran5:armhf.
228s Preparing to unpack .../2-libgfortran5_15-20250222-0ubuntu1_armhf.deb ...
228s Unpacking libgfortran5:armhf (15-20250222-0ubuntu1) ...
228s Selecting previously unselected package liblapack3:armhf.
228s Preparing to unpack .../3-liblapack3_3.12.1-2_armhf.deb ...
228s Unpacking liblapack3:armhf (3.12.1-2) ...
228s Selecting previously unselected package python3-numpy.
228s Preparing to unpack .../4-python3-numpy_1%3a2.2.3+ds-5_armhf.deb ...
228s Unpacking python3-numpy (1:2.2.3+ds-5) ...
228s Selecting previously unselected package liblbfgsb0:armhf.
228s Preparing to unpack .../5-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ...
228s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ...
228s Selecting previously unselected package python3-decorator.
228s Preparing to unpack .../6-python3-decorator_5.1.1-5_all.deb ...
228s Unpacking python3-decorator (5.1.1-5) ...
228s Selecting previously unselected package python3-scipy.
228s Preparing to unpack .../7-python3-scipy_1.14.1-4ubuntu2_armhf.deb ...
228s Unpacking python3-scipy (1.14.1-4ubuntu2) ...
229s Selecting previously unselected package uc-echo.
229s Preparing to unpack .../8-uc-echo_1.12-19_armhf.deb ...
229s Unpacking uc-echo (1.12-19) ...
229s Setting up python3-decorator (5.1.1-5) ...
229s Setting up libblas3:armhf (3.12.1-2) ...
229s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
229s Setting up python3-numpy-dev:armhf (1:2.2.3+ds-5) ...
229s Setting up libgfortran5:armhf (15-20250222-0ubuntu1) ...
229s Setting up liblapack3:armhf (3.12.1-2) ...
229s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
229s Setting up python3-numpy (1:2.2.3+ds-5) ...
231s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ...
231s Setting up python3-scipy (1.14.1-4ubuntu2) ...
235s Setting up uc-echo (1.12-19) ...
236s Processing triggers for man-db (2.13.0-1) ...
236s Processing triggers for libc-bin (2.41-1ubuntu2) ...
244s autopkgtest [18:13:01]: test runtest: [-----------------------
246s Test for sample data
271s 2025_03_15-18_13_03: Run with parameters: ['/usr/lib/uc-echo/ErrorCorrection.py', '-o', 'output/sample_data.fastq', 'sample_data.txt']
271s 
271s 2025_03_15-18_13_03: Temporary Directory: /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/
271s 
271s 2025_03_15-18_13_03: Starting...
271s 
271s 2025_03_15-18_13_03: Data preprocessing complete.
271s 
271s 2025_03_15-18_13_03: Use parameter k = 15
271s 
271s 2025_03_15-18_13_03: Overlap search range: [38, 50]
271s 
271s 2025_03_15-18_13_03: Error tolerance search range: [0.050000, 0.150000]
271s 
271s 2025_03_15-18_13_03: Total number of hash files: 1
271s 
271s 2025_03_15-18_13_03: /usr/lib/uc-echo/hashing -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -nhash 1 -ihash_st 0 -ihash_ed 1 -K 15 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0
271s 
271s b''
271s 2025_03_15-18_13_05: mv /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/0.hash /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/t_1_0.hash
271s 
271s b''
271s 2025_03_15-18_13_05: mv /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/0.index /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/t_1_0.index
271s 
271s b''
271s 2025_03_15-18_13_05: mv /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/t_1_0.hash /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/all.hash
271s 
271s b''
271s 2025_03_15-18_13_05: mv /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/t_1_0.index /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/all.index
271s 
271s b''
271s 2025_03_15-18_13_05: /usr/lib/uc-echo/NeighborJoinParam -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 38 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_0_0 -ihash_st 0 -ihash_ed 196024 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/all.hash -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/all.index
271s 
271s b''
271s 2025_03_15-18_13_09: mv /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0_0.list /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_1_0_0_0.list
271s 
271s b''
271s 2025_03_15-18_13_09: mv /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_1_0_0_0.list /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list
271s 
271s b''
271s 2025_03_15-18_13_09: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 38 -e 0.050000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_38_0.050000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
271s 
271s b''
271s 2025_03_15-18_13_10: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 38 -e 0.100000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_38_0.100000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
271s 
271s b''
271s 2025_03_15-18_13_11: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 38 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_38_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
271s 
271s b''
271s 2025_03_15-18_13_12: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 40 -e 0.050000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_40_0.050000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
271s 
271s b''
271s 2025_03_15-18_13_14: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 40 -e 0.100000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_40_0.100000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
271s 
271s b''
271s 2025_03_15-18_13_15: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 40 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_40_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
271s 
271s b''
271s 2025_03_15-18_13_16: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 42 -e 0.050000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_42_0.050000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
271s 
271s b''
271s 2025_03_15-18_13_17: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 42 -e 0.100000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_42_0.100000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
271s 
271s b''
271s 2025_03_15-18_13_18: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 42 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_42_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
271s 
271s b''
271s 2025_03_15-18_13_19: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.050000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_44_0.050000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
271s 
271s b''
271s 2025_03_15-18_13_21: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.100000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_44_0.100000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
271s 
271s b''
271s 2025_03_15-18_13_22: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
271s 
271s b''
271s 2025_03_15-18_13_23: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 46 -e 0.050000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_46_0.050000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
271s 
271s b''
271s 2025_03_15-18_13_24: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 46 -e 0.100000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_46_0.100000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
271s 
271s b''
271s 2025_03_15-18_13_25: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 46 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_46_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
271s 
271s b''
271s 2025_03_15-18_13_26: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 48 -e 0.050000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_48_0.050000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
271s 
271s b''
271s 2025_03_15-18_13_27: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 48 -e 0.100000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_48_0.100000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
271s 
271s b''
271s 2025_03_15-18_13_28: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 48 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_48_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
285s 
285s b''
285s 2025_03_15-18_13_29: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 50 -e 0.050000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_50_0.050000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
285s 
285s b''
285s 2025_03_15-18_13_31: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 50 -e 0.100000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_50_0.100000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
285s 
285s b''
285s 2025_03_15-18_13_32: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 50 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_50_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -save_stats 1
285s 
285s b''
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(38), np.float64(0.05)), (np.float64(0.18561481981238565), 9))
285s 
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(38), np.float64(0.1)), (np.float64(0.08050669238864605), 10))
285s 
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(38), np.float64(0.15000000000000002)), (np.float64(0.06746534845410698), 10))
285s 
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(40), np.float64(0.05)), (np.float64(0.1654068031458849), 9))
285s 
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(40), np.float64(0.1)), (np.float64(0.07524134994153966), 10))
285s 
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(40), np.float64(0.15000000000000002)), (np.float64(0.04913554862227221), 10))
285s 
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(42), np.float64(0.05)), (np.float64(0.17318357548530197), 8))
285s 
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(42), np.float64(0.1)), (np.float64(0.07287133664741444), 9))
285s 
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(42), np.float64(0.15000000000000002)), (np.float64(0.0695123346664096), 9))
285s 
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(44), np.float64(0.05)), (np.float64(0.1519023489042448), 8))
285s 
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(44), np.float64(0.1)), (np.float64(0.07362103430296754), 9))
285s 
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(44), np.float64(0.15000000000000002)), (np.float64(0.04121078650470523), 9))
285s 
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(46), np.float64(0.05)), (np.float64(0.16617471166086373), 7))
285s 
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(46), np.float64(0.1)), (np.float64(0.07082303987206354), 8))
285s 
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(46), np.float64(0.15000000000000002)), (np.float64(0.06701208244754056), 8))
285s 
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(48), np.float64(0.05)), (np.float64(0.1522155942775201), 7))
285s 
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(48), np.float64(0.1)), (np.float64(0.07360013388104586), 8))
285s 
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(48), np.float64(0.15000000000000002)), (np.float64(0.0425944498445609), 8))
285s 
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(50), np.float64(0.05)), (np.float64(0.15215983254603385), 7))
285s 
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(50), np.float64(0.1)), (np.float64(0.0659333775623097), 7))
285s 
285s 2025_03_15-18_13_33: Total Variation: ((np.int32(50), np.float64(0.15000000000000002)), (np.float64(0.06477280129261791), 7))
285s 
285s 2025_03_15-18_13_33: Estimated Coverage: 9
285s 
285s 2025_03_15-18_13_33: param: h=44 e=0.15000000000000002 cov=9 max_cov=24 min_cov=0
285s 
285s 2025_03_15-18_13_33: h, e, mu selection complete.
285s 
285s 2025_03_15-18_13_33: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -confMat /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
285s 
285s b''
285s 2025_03_15-18_13_34: EM Iteration 0: relative error = 0.000235350798576072
285s 
285s 2025_03_15-18_13_34: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -confMat /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
285s 
285s b''
285s 2025_03_15-18_13_35: EM Iteration 1: relative error = 6.577855579460539e-06
285s 
285s 2025_03_15-18_13_35: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -confMat /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
285s 
285s b''
285s 2025_03_15-18_13_36: EM Iteration 2: relative error = 2.591177699282294e-07
285s 
285s 2025_03_15-18_13_36: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -confMat /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
285s 
285s b''
285s 2025_03_15-18_13_38: EM Iteration 3: relative error = 2.5646124798903106e-08
285s 
285s 2025_03_15-18_13_38: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -confMat /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
285s 
285s b''
285s 2025_03_15-18_13_39: EM Iteration 4: relative error = 1.1565933113109722e-09
285s 
285s 2025_03_15-18_13_39: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -confMat /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
285s 
285s b''
285s 2025_03_15-18_13_40: EM Iteration 5: relative error = 1.2105262006751484e-10
285s 
285s 2025_03_15-18_13_40: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -confMat /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
285s 
285s b''
285s 2025_03_15-18_13_41: EM Iteration 6: relative error = 1.5789472182111667e-11
285s 
285s 2025_03_15-18_13_41: cp /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/confmat_0_44_0.150000.txt /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/confMatEst.txt
285s 
285s b''
285s 2025_03_15-18_13_41: EM complete.
285s 
285s 2025_03_15-18_13_41: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_0_0 -ihash_st 0 -ihash_ed 24503 -max_cov 24 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/all.hash -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/all.index
285s 
285s b''
285s 2025_03_15-18_13_42: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 1_0_0 -ihash_st 24503 -ihash_ed 49006 -max_cov 24 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/all.hash -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/all.index
292s 
292s b''
292s 2025_03_15-18_13_43: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 2_0_0 -ihash_st 49006 -ihash_ed 73509 -max_cov 24 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/all.hash -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/all.index
292s 
292s b''
292s 2025_03_15-18_13_43: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 3_0_0 -ihash_st 73509 -ihash_ed 98012 -max_cov 24 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/all.hash -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/all.index
292s 
292s b''
292s 2025_03_15-18_13_44: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 4_0_0 -ihash_st 98012 -ihash_ed 122515 -max_cov 24 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/all.hash -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/all.index
292s 
292s b''
292s 2025_03_15-18_13_45: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 5_0_0 -ihash_st 122515 -ihash_ed 147018 -max_cov 24 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/all.hash -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/all.index
292s 
292s b''
292s 2025_03_15-18_13_45: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 6_0_0 -ihash_st 147018 -ihash_ed 171521 -max_cov 24 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/all.hash -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/all.index
292s 
292s b''
292s 2025_03_15-18_13_46: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 7_0_0 -ihash_st 171521 -ihash_ed 196024 -max_cov 24 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/all.hash -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/all.index
292s 
292s b''
292s 2025_03_15-18_13_47: /usr/lib/uc-echo/NeighborMerge -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 1_0_0_0 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0_0.list -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_1_0_0.list -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_2_0_0.list -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_3_0_0.list -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_4_0_0.list -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_5_0_0.list -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_6_0_0.list -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_7_0_0.list
292s 
292s b''
292s 2025_03_15-18_13_47: rm /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0_0.list /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_1_0_0.list /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_2_0_0.list /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_3_0_0.list /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_4_0_0.list /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_5_0_0.list /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_6_0_0.list /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_7_0_0.list
292s 
292s b''
292s 2025_03_15-18_13_47: mv /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_1_0_0_0.list /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list
292s 
292s b''
292s 2025_03_15-18_13_47: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/neighbors_0_0.list -confMat /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/confMatEst.txt -max_cov 24 -min_cov 0 -cov 9
292s 
292s b''
292s 2025_03_15-18_13_48: Deleting Neighbor Files...
292s 
292s 2025_03_15-18_13_48: find /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmphdf5vt9b/ -name neighbor* -delete
292s 
292s b''
292s 2025_03_15-18_13_48: Error correction complete.
292s 
292s 2025_03_15-18_13_49: Removing Temporary Directory...
292s 
292s 2025_03_15-18_13_49: Output is in file: output/sample_data.fastq
292s 
292s 2025_03_15-18_13_49: Total running time (h:m:s): 0:00:45.405455
292s 
292s 2025_03_15-18_13_49: End...
292s 
292s Run with 4 threads
303s 2025_03_15-18_13_49: Run with parameters: ['/usr/lib/uc-echo/ErrorCorrection.py', '--ncpu', '4', '-o', 'output/sample_data.fastq', 'sample_data.txt']
303s 
303s 2025_03_15-18_13_49: Temporary Directory: /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/
303s 
303s 2025_03_15-18_13_49: Starting...
303s 
303s 2025_03_15-18_13_50: Data preprocessing complete.
303s 
303s 2025_03_15-18_13_50: Use parameter k = 15
303s 
303s 2025_03_15-18_13_50: Overlap search range: [38, 50]
303s 
303s 2025_03_15-18_13_50: Error tolerance search range: [0.050000, 0.150000]
303s 
303s 2025_03_15-18_13_50: Total number of hash files: 1
303s 
303s 2025_03_15-18_13_50: /usr/lib/uc-echo/hashing -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -nhash 1 -ihash_st 0 -ihash_ed 1 -K 15 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0
303s 
303s b''
303s 2025_03_15-18_13_52: mv /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/0.hash /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/t_1_0.hash
303s 
303s b''
303s 2025_03_15-18_13_52: mv /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/0.index /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/t_1_0.index
303s 
303s b''
303s 2025_03_15-18_13_52: mv /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/t_1_0.hash /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/all.hash
303s 
303s b''
303s 2025_03_15-18_13_52: mv /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/t_1_0.index /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/all.index
303s 
303s b''
303s 2025_03_15-18_13_52: /usr/lib/uc-echo/NeighborJoinParam -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 38 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_0_0 -ihash_st 0 -ihash_ed 196024 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/all.hash -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/all.index
303s 
303s b''
303s 2025_03_15-18_13_55: mv /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0_0.list /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_1_0_0_0.list
303s 
303s b''
303s 2025_03_15-18_13_55: mv /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_1_0_0_0.list /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list
303s 
303s b''
303s 2025_03_15-18_13_55: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 38 -e 0.050000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_38_0.050000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
303s 
303s 2025_03_15-18_13_55: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 38 -e 0.100000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_38_0.100000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
303s 
303s 2025_03_15-18_13_55: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 38 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_38_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
303s 
303s 2025_03_15-18_13_55: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 40 -e 0.050000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_40_0.050000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
303s 
303s b''
303s 2025_03_15-18_13_56: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 40 -e 0.100000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_40_0.100000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
303s 
303s b''
303s 2025_03_15-18_13_56: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 40 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_40_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
303s 
303s b''
303s 2025_03_15-18_13_57: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 42 -e 0.050000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_42_0.050000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
303s 
303s b''
303s 2025_03_15-18_13_57: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 42 -e 0.100000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_42_0.100000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
303s 
303s b''
303s 2025_03_15-18_13_58: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 42 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_42_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
303s 
303s b''
303s 2025_03_15-18_13_58: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.050000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_44_0.050000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
303s 
303s b''
303s 2025_03_15-18_13_58: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.100000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_44_0.100000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
303s 
303s b''
303s 2025_03_15-18_13_58: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
303s 
303s b''
303s 2025_03_15-18_13_59: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 46 -e 0.050000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_46_0.050000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
303s 
303s b''
303s 2025_03_15-18_13_59: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 46 -e 0.100000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_46_0.100000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
303s 
303s b''
303s 2025_03_15-18_13_59: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 46 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_46_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
303s 
303s b''
303s 2025_03_15-18_13_59: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 48 -e 0.050000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_48_0.050000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
303s 
303s b''
303s 2025_03_15-18_14_00: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 48 -e 0.100000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_48_0.100000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
303s 
303s b''
303s 2025_03_15-18_14_00: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 48 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_48_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
315s 
315s b''
315s 2025_03_15-18_14_00: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 50 -e 0.050000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_50_0.050000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
315s 
315s b''
315s 2025_03_15-18_14_00: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 50 -e 0.100000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_50_0.100000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
315s 
315s b''
315s 2025_03_15-18_14_01: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 50 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_50_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -save_stats 1
315s 
315s b''
315s b''
315s b''
315s b''
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(38), np.float64(0.05)), (np.float64(0.18561481981238565), 9))
315s 
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(38), np.float64(0.1)), (np.float64(0.08050669238864605), 10))
315s 
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(38), np.float64(0.15000000000000002)), (np.float64(0.06746534845410698), 10))
315s 
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(40), np.float64(0.05)), (np.float64(0.1654068031458849), 9))
315s 
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(40), np.float64(0.1)), (np.float64(0.07524134994153966), 10))
315s 
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(40), np.float64(0.15000000000000002)), (np.float64(0.04913554862227221), 10))
315s 
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(42), np.float64(0.05)), (np.float64(0.17318357548530197), 8))
315s 
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(42), np.float64(0.1)), (np.float64(0.07287133664741444), 9))
315s 
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(42), np.float64(0.15000000000000002)), (np.float64(0.0695123346664096), 9))
315s 
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(44), np.float64(0.05)), (np.float64(0.1519023489042448), 8))
315s 
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(44), np.float64(0.1)), (np.float64(0.07362103430296754), 9))
315s 
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(44), np.float64(0.15000000000000002)), (np.float64(0.04121078650470523), 9))
315s 
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(46), np.float64(0.05)), (np.float64(0.16617471166086373), 7))
315s 
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(46), np.float64(0.1)), (np.float64(0.07082303987206354), 8))
315s 
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(46), np.float64(0.15000000000000002)), (np.float64(0.06701208244754056), 8))
315s 
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(48), np.float64(0.05)), (np.float64(0.1522155942775201), 7))
315s 
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(48), np.float64(0.1)), (np.float64(0.07360013388104586), 8))
315s 
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(48), np.float64(0.15000000000000002)), (np.float64(0.0425944498445609), 8))
315s 
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(50), np.float64(0.05)), (np.float64(0.15215983254603385), 7))
315s 
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(50), np.float64(0.1)), (np.float64(0.0659333775623097), 7))
315s 
315s 2025_03_15-18_14_02: Total Variation: ((np.int32(50), np.float64(0.15000000000000002)), (np.float64(0.06477280129261791), 7))
315s 
315s 2025_03_15-18_14_02: Estimated Coverage: 9
315s 
315s 2025_03_15-18_14_02: param: h=44 e=0.15000000000000002 cov=9 max_cov=24 min_cov=0
315s 
315s 2025_03_15-18_14_02: h, e, mu selection complete.
315s 
315s 2025_03_15-18_14_02: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -confMat /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
315s 
315s b''
315s 2025_03_15-18_14_04: EM Iteration 0: relative error = 0.000235350798576072
315s 
315s 2025_03_15-18_14_04: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -confMat /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
315s 
315s b''
315s 2025_03_15-18_14_05: EM Iteration 1: relative error = 6.577855579460539e-06
315s 
315s 2025_03_15-18_14_05: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -confMat /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
315s 
315s b''
315s 2025_03_15-18_14_06: EM Iteration 2: relative error = 2.591177699282294e-07
315s 
315s 2025_03_15-18_14_06: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -confMat /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
315s 
315s b''
315s 2025_03_15-18_14_07: EM Iteration 3: relative error = 2.5646124798903106e-08
315s 
315s 2025_03_15-18_14_07: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -confMat /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
315s 
315s b''
315s 2025_03_15-18_14_08: EM Iteration 4: relative error = 1.1565933113109722e-09
315s 
315s 2025_03_15-18_14_08: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -confMat /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
315s 
315s b''
315s 2025_03_15-18_14_10: EM Iteration 5: relative error = 1.2105262006751484e-10
315s 
315s 2025_03_15-18_14_10: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -confMat /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
315s 
315s b''
315s 2025_03_15-18_14_11: EM Iteration 6: relative error = 1.5789472182111667e-11
315s 
315s 2025_03_15-18_14_11: cp /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/confmat_0_44_0.150000.txt /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/confMatEst.txt
315s 
315s b''
315s 2025_03_15-18_14_11: EM complete.
315s 
315s 2025_03_15-18_14_11: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_0_0 -ihash_st 0 -ihash_ed 24503 -max_cov 24 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/all.hash -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/all.index
315s 
315s b''
315s 2025_03_15-18_14_12: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 1_0_0 -ihash_st 24503 -ihash_ed 49006 -max_cov 24 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/all.hash -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/all.index
322s 
322s b''
322s 2025_03_15-18_14_12: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 2_0_0 -ihash_st 49006 -ihash_ed 73509 -max_cov 24 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/all.hash -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/all.index
322s 
322s b''
322s 2025_03_15-18_14_13: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 3_0_0 -ihash_st 73509 -ihash_ed 98012 -max_cov 24 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/all.hash -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/all.index
322s 
322s b''
322s 2025_03_15-18_14_14: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 4_0_0 -ihash_st 98012 -ihash_ed 122515 -max_cov 24 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/all.hash -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/all.index
322s 
322s b''
322s 2025_03_15-18_14_15: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 5_0_0 -ihash_st 122515 -ihash_ed 147018 -max_cov 24 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/all.hash -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/all.index
322s 
322s b''
322s 2025_03_15-18_14_15: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 6_0_0 -ihash_st 147018 -ihash_ed 171521 -max_cov 24 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/all.hash -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/all.index
322s 
322s b''
322s 2025_03_15-18_14_16: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 7_0_0 -ihash_st 171521 -ihash_ed 196024 -max_cov 24 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/all.hash -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/all.index
322s 
322s b''
322s 2025_03_15-18_14_17: /usr/lib/uc-echo/NeighborMerge -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 1_0_0_0 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0_0.list -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_1_0_0.list -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_2_0_0.list -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_3_0_0.list -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_4_0_0.list -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_5_0_0.list -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_6_0_0.list -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_7_0_0.list
322s 
322s b''
322s 2025_03_15-18_14_17: rm /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0_0.list /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_1_0_0.list /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_2_0_0.list /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_3_0_0.list /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_4_0_0.list /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_5_0_0.list /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_6_0_0.list /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_7_0_0.list
322s 
322s b''
322s 2025_03_15-18_14_17: mv /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_1_0_0_0.list /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list
322s 
322s b''
322s 2025_03_15-18_14_17: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/neighbors_0_0.list -confMat /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/confMatEst.txt -max_cov 24 -min_cov 0 -cov 9
322s 
322s b''
322s 2025_03_15-18_14_19: Deleting Neighbor Files...
322s 
322s 2025_03_15-18_14_19: find /tmp/autopkgtest.kGuIo1/build.AOh/src/tmp/tmpvptn5uxy/ -name neighbor* -delete
322s 
322s b''
322s 2025_03_15-18_14_19: Error correction complete.
322s 
322s 2025_03_15-18_14_19: Removing Temporary Directory...
322s 
322s 2025_03_15-18_14_19: Output is in file: output/sample_data.fastq
322s 
322s 2025_03_15-18_14_19: Total running time (h:m:s): 0:00:29.378812
322s 
322s 2025_03_15-18_14_19: End...
322s 
322s cleaning up ...
323s autopkgtest [18:14:19]: test runtest: -----------------------]
327s runtest              PASS
327s autopkgtest [18:14:24]: test runtest:  - - - - - - - - - - results - - - - - - - - - -
331s autopkgtest [18:14:28]: @@@@@@@@@@@@@@@@@@@@ summary
331s runtest              PASS