0s autopkgtest [13:03:32]: starting date and time: 2025-03-15 13:03:32+0000 0s autopkgtest [13:03:32]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [13:03:32]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bhpbt6xi/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade trf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.79 lxd-armhf-10.145.243.79:autopkgtest/ubuntu/plucky/armhf 20s autopkgtest [13:03:52]: testbed dpkg architecture: armhf 22s autopkgtest [13:03:54]: testbed apt version: 2.9.33 26s autopkgtest [13:03:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup 30s autopkgtest [13:04:02]: testbed release detected to be: None 40s autopkgtest [13:04:12]: updating testbed package index (apt update) 43s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 43s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 44s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 44s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 44s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [46.2 kB] 44s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 44s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [410 kB] 45s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [80.8 kB] 45s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1860 B] 45s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 45s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [332 kB] 45s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [12.1 kB] 45s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 45s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [332 B] 45s Get:15 http://ftpmaster.internal/ubuntu plucky/main Sources [1388 kB] 46s Get:16 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 66s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1379 kB] 67s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 67s Get:19 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 67s Get:20 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [14.9 MB] 83s Fetched 40.3 MB in 39s (1020 kB/s) 84s Reading package lists... 90s autopkgtest [13:05:02]: upgrading testbed (apt dist-upgrade and autopurge) 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 93s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 93s Starting 2 pkgProblemResolver with broken count: 0 93s Done 93s Entering ResolveByKeep 94s 94s Calculating upgrade... 94s The following packages will be upgraded: 94s libc-bin libc6 locales python3-jinja2 strace 95s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s Need to get 8277 kB of archives. 95s After this operation, 23.6 kB of additional disk space will be used. 95s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 97s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 97s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 101s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 101s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 102s Preconfiguring packages ... 102s Fetched 8277 kB in 7s (1202 kB/s) 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 102s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 102s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 102s Setting up libc6:armhf (2.41-1ubuntu2) ... 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 102s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 102s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 102s Setting up libc-bin (2.41-1ubuntu2) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 103s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 103s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 103s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 103s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 103s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 103s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 103s Setting up locales (2.41-1ubuntu2) ... 104s Generating locales (this might take a while)... 105s en_US.UTF-8... done 105s Generation complete. 106s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 106s Setting up strace (6.13+ds-1ubuntu1) ... 106s Processing triggers for man-db (2.13.0-1) ... 107s Processing triggers for systemd (257.3-1ubuntu3) ... 109s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s Starting pkgProblemResolver with broken count: 0 110s Starting 2 pkgProblemResolver with broken count: 0 110s Done 111s Solving dependencies... 111s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s autopkgtest [13:05:25]: rebooting testbed after setup commands that affected boot 156s autopkgtest [13:06:08]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 183s autopkgtest [13:06:35]: @@@@@@@@@@@@@@@@@@@@ apt-source trf 200s Get:1 http://ftpmaster.internal/ubuntu plucky/universe trf 4.09.1-6 (dsc) [2054 B] 200s Get:2 http://ftpmaster.internal/ubuntu plucky/universe trf 4.09.1-6 (tar) [274 kB] 200s Get:3 http://ftpmaster.internal/ubuntu plucky/universe trf 4.09.1-6 (diff) [16.1 kB] 200s gpgv: Signature made Sun Oct 2 13:33:54 2022 UTC 200s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 200s gpgv: issuer "emollier@debian.org" 200s gpgv: Can't check signature: No public key 200s dpkg-source: warning: cannot verify inline signature for ./trf_4.09.1-6.dsc: no acceptable signature found 200s autopkgtest [13:06:52]: testing package trf version 4.09.1-6 202s autopkgtest [13:06:54]: build not needed 205s autopkgtest [13:06:57]: test run-unit-test: preparing testbed 207s Reading package lists... 208s Building dependency tree... 208s Reading state information... 208s Starting pkgProblemResolver with broken count: 0 208s Starting 2 pkgProblemResolver with broken count: 0 208s Done 209s The following NEW packages will be installed: 209s bc html2text trf trf-examples 209s 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 209s Need to get 228 kB of archives. 209s After this operation, 672 kB of additional disk space will be used. 209s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf bc armhf 1.07.1-4 [82.4 kB] 209s Get:2 http://ftpmaster.internal/ubuntu plucky/universe armhf html2text armhf 2.2.3-3 [76.9 kB] 210s Get:3 http://ftpmaster.internal/ubuntu plucky/universe armhf trf armhf 4.09.1-6 [53.8 kB] 210s Get:4 http://ftpmaster.internal/ubuntu plucky/universe armhf trf-examples all 4.09.1-6 [14.6 kB] 210s Fetched 228 kB in 1s (372 kB/s) 210s Selecting previously unselected package bc. 210s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 210s Preparing to unpack .../archives/bc_1.07.1-4_armhf.deb ... 210s Unpacking bc (1.07.1-4) ... 210s Selecting previously unselected package html2text. 210s Preparing to unpack .../html2text_2.2.3-3_armhf.deb ... 210s Unpacking html2text (2.2.3-3) ... 210s Selecting previously unselected package trf. 210s Preparing to unpack .../trf_4.09.1-6_armhf.deb ... 210s Unpacking trf (4.09.1-6) ... 210s Selecting previously unselected package trf-examples. 210s Preparing to unpack .../trf-examples_4.09.1-6_all.deb ... 210s Unpacking trf-examples (4.09.1-6) ... 210s Setting up trf-examples (4.09.1-6) ... 210s Setting up bc (1.07.1-4) ... 210s Setting up trf (4.09.1-6) ... 210s Setting up html2text (2.2.3-3) ... 210s Processing triggers for man-db (2.13.0-1) ... 211s Processing triggers for install-info (7.1.1-1) ... 222s autopkgtest [13:07:14]: test run-unit-test: [----------------------- 225s 225s Tandem Repeats Finder, Version 4.09 225s Copyright (C) Dr. Gary Benson 1999-2012. All rights reserved. 225s 225s Loading sequence... 225s Allocating Memory... 225s Initializing data structures... 225s Computing TR Model Statistics... 225s Scanning Sequence 1... 225s Freeing Memory... 225s Resolving output... 225s Done. 225s Loading sequence file... 225s Allocating Memory... 225s Initializing data structures... 225s Computing TR Model Statistics... 225s Scanning Sequence 2... 225s . 225s 225s . 225s 225s ...................... 225s comparing test results of test_seqs.fasta.s3.2.5.7.80.10.50.2000.1.html ... 225s |       | Size |Number|  Size   |Matches|Indels |     |   |   |   |   | (0-2) | 225s |1--1225|  35  | 35.0 |   35    |  100  |   0   |2450 |28 |22 |20 |28 | 1.98  | 225s Compare consensus size 225s Comparing entropy 225s PASS 225s comparing test results of test_seqs.fasta.s2.2.5.7.80.10.50.2000.1.html ... 225s |       | Size |Number|  Size   |Matches|Indels |     |   |   |   |   | (0-2) | 225s | 1--84 |  12  | 7.0  |   12    |  100  |   0   | 168 |16 |41 |25 |16 | 1.89  | 225s Compare consensus size 225s Comparing entropy 225s PASS 225s comparing test results of test_seqs.fasta.s1.2.5.7.80.10.50.2000.1.html ... 225s |       | Size |Number|  Size   |Matches|Indels |     |   |   |   |   | (0-2) | 225s | 1--35 |  7   | 5.0  |    7    |  100  |   0   | 70  |14 |28 |28 |28 | 1.95  | 225s Compare consensus size 225s 225s Freeing Memory... 225s Resolving output... 225s Done. 225s Loading sequence file... 225s Allocating Memory... 225s Initializing data structures... 225s Computing TR Model Statistics... 225s Scanning Sequence 3... 225s Freeing Memory... 225s Resolving output... 225s Done./tmp/autopkgtest.u5F7Va/build.39H/src/debian/tests/run-unit-test: line 49: [:  Size : integer expression expected 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s /tmp/autopkgtest.u5F7Va/build.39H/src/debian/tests/run-unit-test: line 49: [:  Size : integer expression expected 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s /tmp/autopkgtest.u5F7Va/build.39H/src/debian/tests/run-unit-test: line 49: [:  Size : integer expression expected 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s (standard_in) 1: illegal character: ^H 225s Comparing entropy 225s PASS 225s autopkgtest [13:07:17]: test run-unit-test: -----------------------] 229s autopkgtest [13:07:21]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 229s run-unit-test PASS 233s autopkgtest [13:07:25]: @@@@@@@@@@@@@@@@@@@@ summary 233s run-unit-test PASS