0s autopkgtest [17:40:15]: starting date and time: 2025-03-15 17:40:15+0000 0s autopkgtest [17:40:15]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:40:15]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.wdqrzljm/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade transtermhp --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.239 lxd-armhf-10.145.243.239:autopkgtest/ubuntu/plucky/armhf 21s autopkgtest [17:40:36]: testbed dpkg architecture: armhf 23s autopkgtest [17:40:38]: testbed apt version: 2.9.33 27s autopkgtest [17:40:42]: @@@@@@@@@@@@@@@@@@@@ test bed setup 29s autopkgtest [17:40:44]: testbed release detected to be: None 36s autopkgtest [17:40:51]: updating testbed package index (apt update) 38s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 38s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 39s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 39s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 39s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 39s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 39s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 39s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [114 kB] 40s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1832 B] 40s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 40s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [312 kB] 40s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [11.1 kB] 40s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 40s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 40s Get:15 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 40s Get:16 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 56s Get:17 http://ftpmaster.internal/ubuntu plucky/main Sources [1394 kB] 57s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 58s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 58s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 58s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 70s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 72s Fetched 41.0 MB in 34s (1220 kB/s) 73s Reading package lists... 79s autopkgtest [17:41:34]: upgrading testbed (apt dist-upgrade and autopurge) 80s Reading package lists... 81s Building dependency tree... 81s Reading state information... 81s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 81s Starting 2 pkgProblemResolver with broken count: 0 81s Done 82s Entering ResolveByKeep 82s 82s Calculating upgrade... 83s The following packages will be upgraded: 83s libc-bin libc6 locales pinentry-curses python3-jinja2 sos strace 83s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 83s Need to get 8683 kB of archives. 83s After this operation, 23.6 kB of additional disk space will be used. 83s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 86s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 86s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 89s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 90s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 90s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 90s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 90s Preconfiguring packages ... 91s Fetched 8683 kB in 7s (1225 kB/s) 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 91s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 91s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 91s Setting up libc6:armhf (2.41-1ubuntu2) ... 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 92s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 92s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 92s Setting up libc-bin (2.41-1ubuntu2) ... 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 92s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 92s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 92s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 92s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 92s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 92s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 92s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 92s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 92s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 92s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 92s Setting up sos (4.9.0-5) ... 93s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 93s Setting up locales (2.41-1ubuntu2) ... 94s Generating locales (this might take a while)... 95s en_US.UTF-8... done 95s Generation complete. 95s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 96s Setting up strace (6.13+ds-1ubuntu1) ... 96s Processing triggers for man-db (2.13.0-1) ... 97s Processing triggers for systemd (257.3-1ubuntu3) ... 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 100s Starting pkgProblemResolver with broken count: 0 100s Starting 2 pkgProblemResolver with broken count: 0 100s Done 100s Solving dependencies... 101s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 103s autopkgtest [17:41:58]: rebooting testbed after setup commands that affected boot 149s autopkgtest [17:42:44]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 174s autopkgtest [17:43:09]: @@@@@@@@@@@@@@@@@@@@ apt-source transtermhp 184s Get:1 http://ftpmaster.internal/ubuntu plucky/universe transtermhp 2.09-5 (dsc) [2099 B] 184s Get:2 http://ftpmaster.internal/ubuntu plucky/universe transtermhp 2.09-5 (tar) [71.3 kB] 184s Get:3 http://ftpmaster.internal/ubuntu plucky/universe transtermhp 2.09-5 (diff) [15.9 kB] 184s gpgv: Signature made Thu Aug 20 15:06:33 2020 UTC 184s gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 184s gpgv: issuer "npatra974@gmail.com" 184s gpgv: Can't check signature: No public key 184s dpkg-source: warning: cannot verify inline signature for ./transtermhp_2.09-5.dsc: no acceptable signature found 185s autopkgtest [17:43:20]: testing package transtermhp version 2.09-5 187s autopkgtest [17:43:22]: build not needed 189s autopkgtest [17:43:24]: test run-unit-test: preparing testbed 190s Reading package lists... 191s Building dependency tree... 191s Reading state information... 191s Starting pkgProblemResolver with broken count: 0 191s Starting 2 pkgProblemResolver with broken count: 0 191s Done 192s The following NEW packages will be installed: 192s transtermhp 192s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 192s Need to get 114 kB of archives. 192s After this operation, 356 kB of additional disk space will be used. 192s Get:1 http://ftpmaster.internal/ubuntu plucky/universe armhf transtermhp armhf 2.09-5 [114 kB] 193s Fetched 114 kB in 0s (283 kB/s) 193s Selecting previously unselected package transtermhp. 193s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 193s Preparing to unpack .../transtermhp_2.09-5_armhf.deb ... 193s Unpacking transtermhp (2.09-5) ... 193s Setting up transtermhp (2.09-5) ... 193s Processing triggers for man-db (2.13.0-1) ... 201s autopkgtest [17:43:36]: test run-unit-test: [----------------------- 203s calibrate.sh 203s expterm.dat 203s infile.fasta 203s make_expterm.py 203s mfold_rna.sh 203s random_fasta.py 203s Test 1 203s NOTE: warnings about 'using version 1.0 confidence' are expected and OK. 203s TransTerm Options = 203s TransTermHP v2.08 (built on Aug 20 2020) 203s WARNING: USING VERSION 1.0 CONFIDENCE. 203s (use -p expterm.dat to use v2.0 confidence) 203s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 203s 203s --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 203s --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 203s --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 203s --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 203s --start-cut=0 --end-cut=25 203s 203s 203s warning: no examples in genes; can't compute conf. 203s 203s Each terminator entry starts in column 3 and is of the form: 203s term # start - end +/- regionconf hp tail | notes 203s Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. 203s Genes are interspersed, and start the first column. 203s 203s 203s Wall clock time = 0 seconds. 203s calibrate.sh: Running TransTerm on random sequence with %AT = 0.26 219s WARNING: USING VERSION 1.0 CONFIDENCE. 219s (use -p expterm.dat to use v2.0 confidence) 219s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 242s Seq: random (length 20000000, 14802 genes) 242s 242s Wall clock time = 23 seconds. 243s calibrate.sh: Running TransTerm on random sequence with %AT = 0.28 259s WARNING: USING VERSION 1.0 CONFIDENCE. 259s (use -p expterm.dat to use v2.0 confidence) 259s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 284s Seq: random (length 20000000, 14782 genes) 284s 285s Wall clock time = 27 seconds. 285s calibrate.sh: Running TransTerm on random sequence with %AT = 0.30 301s WARNING: USING VERSION 1.0 CONFIDENCE. 301s (use -p expterm.dat to use v2.0 confidence) 301s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 330s Seq: random (length 20000000, 14760 genes) 330s 331s Wall clock time = 30 seconds. 331s calibrate.sh: Running TransTerm on random sequence with %AT = 0.32 347s WARNING: USING VERSION 1.0 CONFIDENCE. 347s (use -p expterm.dat to use v2.0 confidence) 347s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 379s Seq: random (length 20000000, 14808 genes) 379s 380s Wall clock time = 33 seconds. 380s calibrate.sh: Running TransTerm on random sequence with %AT = 0.34 396s WARNING: USING VERSION 1.0 CONFIDENCE. 396s (use -p expterm.dat to use v2.0 confidence) 396s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 432s Seq: random (length 20000000, 14749 genes) 432s 432s Wall clock time = 36 seconds. 432s calibrate.sh: Running TransTerm on random sequence with %AT = 0.36 448s WARNING: USING VERSION 1.0 CONFIDENCE. 448s (use -p expterm.dat to use v2.0 confidence) 448s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 487s Seq: random (length 20000000, 14861 genes) 487s 488s Wall clock time = 40 seconds. 488s calibrate.sh: Running TransTerm on random sequence with %AT = 0.38 504s WARNING: USING VERSION 1.0 CONFIDENCE. 504s (use -p expterm.dat to use v2.0 confidence) 504s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 546s Seq: random (length 20000000, 14798 genes) 546s 547s Wall clock time = 43 seconds. 547s calibrate.sh: Running TransTerm on random sequence with %AT = 0.40 563s WARNING: USING VERSION 1.0 CONFIDENCE. 563s (use -p expterm.dat to use v2.0 confidence) 563s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 608s Seq: random (length 20000000, 14773 genes) 608s 609s Wall clock time = 46 seconds. 609s calibrate.sh: Running TransTerm on random sequence with %AT = 0.42 625s WARNING: USING VERSION 1.0 CONFIDENCE. 625s (use -p expterm.dat to use v2.0 confidence) 625s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 673s Seq: random (length 20000000, 14729 genes) 673s 673s Wall clock time = 48 seconds. 673s calibrate.sh: Running TransTerm on random sequence with %AT = 0.44 689s WARNING: USING VERSION 1.0 CONFIDENCE. 689s (use -p expterm.dat to use v2.0 confidence) 689s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 740s Seq: random (length 20000000, 14825 genes) 740s 740s Wall clock time = 51 seconds. 740s calibrate.sh: Running TransTerm on random sequence with %AT = 0.46 756s WARNING: USING VERSION 1.0 CONFIDENCE. 756s (use -p expterm.dat to use v2.0 confidence) 756s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 809s Seq: random (length 20000000, 14787 genes) 809s 810s Wall clock time = 54 seconds. 810s calibrate.sh: Running TransTerm on random sequence with %AT = 0.48 826s WARNING: USING VERSION 1.0 CONFIDENCE. 826s (use -p expterm.dat to use v2.0 confidence) 826s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 880s Seq: random (length 20000000, 14799 genes) 880s 881s Wall clock time = 55 seconds. 881s calibrate.sh: Running TransTerm on random sequence with %AT = 0.50 897s WARNING: USING VERSION 1.0 CONFIDENCE. 897s (use -p expterm.dat to use v2.0 confidence) 897s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 953s Seq: random (length 20000000, 14829 genes) 953s 954s Wall clock time = 57 seconds. 954s calibrate.sh: Running TransTerm on random sequence with %AT = 0.52 970s WARNING: USING VERSION 1.0 CONFIDENCE. 970s (use -p expterm.dat to use v2.0 confidence) 970s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1029s Seq: random (length 20000000, 14771 genes) 1029s 1029s Wall clock time = 59 seconds. 1029s calibrate.sh: Running TransTerm on random sequence with %AT = 0.54 1045s WARNING: USING VERSION 1.0 CONFIDENCE. 1045s (use -p expterm.dat to use v2.0 confidence) 1045s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1106s Seq: random (length 20000000, 14728 genes) 1106s 1106s Wall clock time = 61 seconds. 1106s calibrate.sh: Running TransTerm on random sequence with %AT = 0.56 1122s WARNING: USING VERSION 1.0 CONFIDENCE. 1122s (use -p expterm.dat to use v2.0 confidence) 1122s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1184s Seq: random (length 20000000, 14794 genes) 1184s 1185s Wall clock time = 63 seconds. 1185s calibrate.sh: Running TransTerm on random sequence with %AT = 0.58 1201s WARNING: USING VERSION 1.0 CONFIDENCE. 1201s (use -p expterm.dat to use v2.0 confidence) 1201s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1264s Seq: random (length 20000000, 14823 genes) 1264s 1265s Wall clock time = 64 seconds. 1265s calibrate.sh: Running TransTerm on random sequence with %AT = 0.60 1281s WARNING: USING VERSION 1.0 CONFIDENCE. 1281s (use -p expterm.dat to use v2.0 confidence) 1281s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1345s Seq: random (length 20000000, 14753 genes) 1345s 1346s Wall clock time = 65 seconds. 1346s calibrate.sh: Running TransTerm on random sequence with %AT = 0.62 1362s WARNING: USING VERSION 1.0 CONFIDENCE. 1362s (use -p expterm.dat to use v2.0 confidence) 1362s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1429s Seq: random (length 20000000, 14775 genes) 1429s 1429s Wall clock time = 67 seconds. 1429s calibrate.sh: Running TransTerm on random sequence with %AT = 0.64 1445s WARNING: USING VERSION 1.0 CONFIDENCE. 1445s (use -p expterm.dat to use v2.0 confidence) 1445s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1512s Seq: random (length 20000000, 14760 genes) 1512s 1512s Wall clock time = 67 seconds. 1512s calibrate.sh: Running TransTerm on random sequence with %AT = 0.66 1528s WARNING: USING VERSION 1.0 CONFIDENCE. 1528s (use -p expterm.dat to use v2.0 confidence) 1528s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1596s Seq: random (length 20000000, 14767 genes) 1596s 1597s Wall clock time = 69 seconds. 1597s calibrate.sh: Running TransTerm on random sequence with %AT = 0.68 1613s WARNING: USING VERSION 1.0 CONFIDENCE. 1613s (use -p expterm.dat to use v2.0 confidence) 1613s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1682s Seq: random (length 20000000, 14833 genes) 1682s 1683s Wall clock time = 70 seconds. 1683s calibrate.sh: Running TransTerm on random sequence with %AT = 0.70 1699s WARNING: USING VERSION 1.0 CONFIDENCE. 1699s (use -p expterm.dat to use v2.0 confidence) 1699s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1769s Seq: random (length 20000000, 14868 genes) 1769s 1769s Wall clock time = 70 seconds. 1769s calibrate.sh: Running TransTerm on random sequence with %AT = 0.72 1785s WARNING: USING VERSION 1.0 CONFIDENCE. 1785s (use -p expterm.dat to use v2.0 confidence) 1785s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1857s Seq: random (length 20000000, 14900 genes) 1857s 1857s Wall clock time = 72 seconds. 1857s calibrate.sh: Running TransTerm on random sequence with %AT = 0.74 1873s WARNING: USING VERSION 1.0 CONFIDENCE. 1873s (use -p expterm.dat to use v2.0 confidence) 1873s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1945s Seq: random (length 20000000, 14727 genes) 1945s 1945s Wall clock time = 72 seconds. 1945s calibrate.sh: Running TransTerm on random sequence with %AT = 0.76 1961s WARNING: USING VERSION 1.0 CONFIDENCE. 1961s (use -p expterm.dat to use v2.0 confidence) 1961s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 2033s Seq: random (length 20000000, 14848 genes) 2033s 2034s Wall clock time = 73 seconds. 2034s calibrate.sh: Running TransTerm on random sequence with %AT = 0.78 2050s WARNING: USING VERSION 1.0 CONFIDENCE. 2050s (use -p expterm.dat to use v2.0 confidence) 2050s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 2122s Seq: random (length 20000000, 14661 genes) 2122s 2123s Wall clock time = 73 seconds. 2123s calibrate.sh: Running TransTerm on random sequence with %AT = 0.80 2139s WARNING: USING VERSION 1.0 CONFIDENCE. 2139s (use -p expterm.dat to use v2.0 confidence) 2139s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 2211s Seq: random (length 20000000, 14705 genes) 2211s 2212s Wall clock time = 73 seconds. 2212s calibrate.sh: Running TransTerm on random sequence with %AT = 0.82 2228s WARNING: USING VERSION 1.0 CONFIDENCE. 2228s (use -p expterm.dat to use v2.0 confidence) 2228s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 2302s Seq: random (length 20000000, 14766 genes) 2302s 2302s Wall clock time = 74 seconds. 2302s calibrate.sh: Running TransTerm on random sequence with %AT = 0.84 2318s WARNING: USING VERSION 1.0 CONFIDENCE. 2318s (use -p expterm.dat to use v2.0 confidence) 2318s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 2392s Seq: random (length 20000000, 14808 genes) 2392s 2393s Wall clock time = 75 seconds. 2393s Creating distribution file in expterm.dat 2395s You must specify a background distribution file with '-p expterm.dat'. 2395s Done. You can run transterm with this background distribution using '-r expterm.dat' 2395s PASS 2395s Test 2 2395s 2ndscore (Aug 20 2020) 2395s 2395s --gc=-2.1 --au=-1.3 --gu=-0.8 --mm=3.5 --gap=3.9 2395s --max-len=59 --max-loop=13 --min-loop=3 2395s --loop-penalty=4.1,4.9,4.4,4.7,5,5.1,5.2,5.3,5.4,5.5,5.6 2395s 2395s 1. Seq: 9258 (length 34) 2395s 2. Seq: 9361 (length 611) 2395s 3. Seq: 9365 (length 796) 2395s 4. Seq: 9371 (length 762) 2395s 5. Seq: 9544 (length 810) 2395s 6. Seq: 9598 (length 797) 2395s 7. Seq: 9606 (length 797) 2395s 8. Seq: 9615 (length 802) 2395s 9. Seq: 9685 (length 687) 2395s 10. Seq: 9785 (length 793) 2395s 11. Seq: 9796 (length 806) 2395s 12. Seq: 9913 (length 798) 2395s 13. Seq: 9986 (length 789) 2395s 14. Seq: 10090 (length 770) 2395s 15. Seq: 10116 (length 832) 2395s 16. Seq: 10141 (length 327) 2396s 17. Seq: 13616 (length 884) 2396s 18. Seq: 28377 (length 87) 2396s 19. Seq: 42254 (length 372) 2396s PASS 2396s autopkgtest [18:20:11]: test run-unit-test: -----------------------] 2400s autopkgtest [18:20:15]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 2400s run-unit-test PASS 2404s autopkgtest [18:20:19]: @@@@@@@@@@@@@@@@@@@@ summary 2404s run-unit-test PASS