0s autopkgtest [10:32:44]: starting date and time: 2025-03-15 10:32:44+0000 0s autopkgtest [10:32:44]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [10:32:44]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.uf2wlnyq/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade tortoize --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.229 lxd-armhf-10.145.243.229:autopkgtest/ubuntu/plucky/armhf 21s autopkgtest [10:33:05]: testbed dpkg architecture: armhf 22s autopkgtest [10:33:06]: testbed apt version: 2.9.33 26s autopkgtest [10:33:10]: @@@@@@@@@@@@@@@@@@@@ test bed setup 28s autopkgtest [10:33:12]: testbed release detected to be: None 36s autopkgtest [10:33:20]: updating testbed package index (apt update) 38s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 38s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 38s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 39s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 39s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.9 kB] 39s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [437 kB] 39s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [51.3 kB] 39s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [85.6 kB] 39s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1640 B] 39s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 39s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [357 kB] 40s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [8192 B] 40s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [6140 B] 40s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [188 B] 40s Get:15 http://ftpmaster.internal/ubuntu plucky/main Sources [1388 kB] 41s Get:16 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 63s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1381 kB] 65s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.5 kB] 65s Get:19 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 65s Get:20 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.2 MB] 81s Fetched 40.7 MB in 44s (933 kB/s) 83s Reading package lists... 88s autopkgtest [10:34:12]: upgrading testbed (apt dist-upgrade and autopurge) 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 91s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 91s Starting 2 pkgProblemResolver with broken count: 0 91s Done 92s Entering ResolveByKeep 92s 92s Calculating upgrade... 93s The following packages will be upgraded: 93s libc-bin libc6 locales python3-jinja2 strace 93s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 93s Need to get 8277 kB of archives. 93s After this operation, 23.6 kB of additional disk space will be used. 93s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 96s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 96s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 101s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 101s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 102s Preconfiguring packages ... 102s Fetched 8277 kB in 9s (966 kB/s) 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 102s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 102s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 102s Setting up libc6:armhf (2.41-1ubuntu2) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 103s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 103s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 103s Setting up libc-bin (2.41-1ubuntu2) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 103s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 103s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 103s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 103s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 103s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 103s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 103s Setting up locales (2.41-1ubuntu2) ... 104s Generating locales (this might take a while)... 106s en_US.UTF-8... done 106s Generation complete. 106s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 107s Setting up strace (6.13+ds-1ubuntu1) ... 107s Processing triggers for man-db (2.13.0-1) ... 108s Processing triggers for systemd (257.3-1ubuntu3) ... 113s Reading package lists... 114s Building dependency tree... 114s Reading state information... 114s Starting pkgProblemResolver with broken count: 0 115s Starting 2 pkgProblemResolver with broken count: 0 115s Done 115s Solving dependencies... 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s autopkgtest [10:34:41]: rebooting testbed after setup commands that affected boot 159s autopkgtest [10:35:23]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 184s autopkgtest [10:35:48]: @@@@@@@@@@@@@@@@@@@@ apt-source tortoize 194s Get:1 http://ftpmaster.internal/ubuntu plucky/universe tortoize 2.0.13-1 (dsc) [2122 B] 194s Get:2 http://ftpmaster.internal/ubuntu plucky/universe tortoize 2.0.13-1 (tar) [314 kB] 194s Get:3 http://ftpmaster.internal/ubuntu plucky/universe tortoize 2.0.13-1 (diff) [24.7 kB] 194s gpgv: Signature made Mon Oct 28 10:04:28 2024 UTC 194s gpgv: using RSA key A72B6824226BB407E24B9E80587503EC7AE7EDCE 194s gpgv: issuer "maarten@hekkelman.com" 194s gpgv: Can't check signature: No public key 194s dpkg-source: warning: cannot verify inline signature for ./tortoize_2.0.13-1.dsc: no acceptable signature found 194s autopkgtest [10:35:58]: testing package tortoize version 2.0.13-1 196s autopkgtest [10:36:00]: build not needed 198s autopkgtest [10:36:02]: test run-unit-test: preparing testbed 200s Reading package lists... 200s Building dependency tree... 200s Reading state information... 200s Starting pkgProblemResolver with broken count: 0 201s Starting 2 pkgProblemResolver with broken count: 0 201s Done 201s The following NEW packages will be installed: 201s icu-devtools libasan8 libboost-regex-dev libboost-regex1.83-dev 201s libboost-regex1.83.0 libboost1.83-dev libc-dev-bin libc6-dev libcifpp-data 201s libcifpp-dev libcifpp7 libcrypt-dev libgcc-14-dev libgomp1 libicu-dev 201s libstdc++-14-dev libubsan1 libzeep5.1 linux-libc-dev rpcsvc-proto tortoize 201s zlib1g-dev 202s 0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded. 202s Need to get 38.6 MB of archives. 202s After this operation, 298 MB of additional disk space will be used. 202s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf icu-devtools armhf 76.1-1ubuntu2 [206 kB] 202s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libasan8 armhf 15-20250222-0ubuntu1 [2955 kB] 205s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 15-20250222-0ubuntu1 [128 kB] 205s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libubsan1 armhf 15-20250222-0ubuntu1 [1191 kB] 206s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-14-dev armhf 14.2.0-17ubuntu3 [897 kB] 207s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-dev-bin armhf 2.41-1ubuntu2 [23.0 kB] 207s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf linux-libc-dev armhf 6.14.0-10.10 [1683 kB] 208s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libcrypt-dev armhf 1:4.4.38-1 [120 kB] 209s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB] 209s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6-dev armhf 2.41-1ubuntu2 [1396 kB] 210s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++-14-dev armhf 14.2.0-17ubuntu3 [2573 kB] 213s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libboost1.83-dev armhf 1.83.0-4.1ubuntu2 [10.7 MB] 222s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libboost-regex1.83.0 armhf 1.83.0-4.1ubuntu2 [323 kB] 223s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libicu-dev armhf 76.1-1ubuntu2 [12.0 MB] 235s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libboost-regex1.83-dev armhf 1.83.0-4.1ubuntu2 [348 kB] 236s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libboost-regex-dev armhf 1.83.0.2ubuntu1 [4486 B] 236s Get:17 http://ftpmaster.internal/ubuntu plucky/universe armhf libcifpp-data all 7.0.9-1 [481 kB] 236s Get:18 http://ftpmaster.internal/ubuntu plucky/universe armhf libcifpp7 armhf 7.0.9-1 [962 kB] 237s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1ubuntu1 [880 kB] 238s Get:20 http://ftpmaster.internal/ubuntu plucky/universe armhf libcifpp-dev armhf 7.0.9-1 [107 kB] 238s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf libzeep5.1 armhf 5.1.8-1build1 [687 kB] 239s Get:22 http://ftpmaster.internal/ubuntu plucky/universe armhf tortoize armhf 2.0.13-1 [835 kB] 240s Preconfiguring packages ... 240s Fetched 38.6 MB in 38s (1009 kB/s) 240s Selecting previously unselected package icu-devtools. 240s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 240s Preparing to unpack .../00-icu-devtools_76.1-1ubuntu2_armhf.deb ... 240s Unpacking icu-devtools (76.1-1ubuntu2) ... 241s Selecting previously unselected package libasan8:armhf. 241s Preparing to unpack .../01-libasan8_15-20250222-0ubuntu1_armhf.deb ... 241s Unpacking libasan8:armhf (15-20250222-0ubuntu1) ... 241s Selecting previously unselected package libgomp1:armhf. 241s Preparing to unpack .../02-libgomp1_15-20250222-0ubuntu1_armhf.deb ... 241s Unpacking libgomp1:armhf (15-20250222-0ubuntu1) ... 241s Selecting previously unselected package libubsan1:armhf. 241s Preparing to unpack .../03-libubsan1_15-20250222-0ubuntu1_armhf.deb ... 241s Unpacking libubsan1:armhf (15-20250222-0ubuntu1) ... 241s Selecting previously unselected package libgcc-14-dev:armhf. 241s Preparing to unpack .../04-libgcc-14-dev_14.2.0-17ubuntu3_armhf.deb ... 241s Unpacking libgcc-14-dev:armhf (14.2.0-17ubuntu3) ... 241s Selecting previously unselected package libc-dev-bin. 241s Preparing to unpack .../05-libc-dev-bin_2.41-1ubuntu2_armhf.deb ... 241s Unpacking libc-dev-bin (2.41-1ubuntu2) ... 241s Selecting previously unselected package linux-libc-dev:armhf. 241s Preparing to unpack .../06-linux-libc-dev_6.14.0-10.10_armhf.deb ... 241s Unpacking linux-libc-dev:armhf (6.14.0-10.10) ... 241s Selecting previously unselected package libcrypt-dev:armhf. 241s Preparing to unpack .../07-libcrypt-dev_1%3a4.4.38-1_armhf.deb ... 241s Unpacking libcrypt-dev:armhf (1:4.4.38-1) ... 241s Selecting previously unselected package rpcsvc-proto. 241s Preparing to unpack .../08-rpcsvc-proto_1.4.2-0ubuntu7_armhf.deb ... 241s Unpacking rpcsvc-proto (1.4.2-0ubuntu7) ... 241s Selecting previously unselected package libc6-dev:armhf. 241s Preparing to unpack .../09-libc6-dev_2.41-1ubuntu2_armhf.deb ... 241s Unpacking libc6-dev:armhf (2.41-1ubuntu2) ... 242s Selecting previously unselected package libstdc++-14-dev:armhf. 242s Preparing to unpack .../10-libstdc++-14-dev_14.2.0-17ubuntu3_armhf.deb ... 242s Unpacking libstdc++-14-dev:armhf (14.2.0-17ubuntu3) ... 242s Selecting previously unselected package libboost1.83-dev:armhf. 242s Preparing to unpack .../11-libboost1.83-dev_1.83.0-4.1ubuntu2_armhf.deb ... 242s Unpacking libboost1.83-dev:armhf (1.83.0-4.1ubuntu2) ... 245s Selecting previously unselected package libboost-regex1.83.0:armhf. 245s Preparing to unpack .../12-libboost-regex1.83.0_1.83.0-4.1ubuntu2_armhf.deb ... 245s Unpacking libboost-regex1.83.0:armhf (1.83.0-4.1ubuntu2) ... 245s Selecting previously unselected package libicu-dev:armhf. 245s Preparing to unpack .../13-libicu-dev_76.1-1ubuntu2_armhf.deb ... 245s Unpacking libicu-dev:armhf (76.1-1ubuntu2) ... 245s Selecting previously unselected package libboost-regex1.83-dev:armhf. 245s Preparing to unpack .../14-libboost-regex1.83-dev_1.83.0-4.1ubuntu2_armhf.deb ... 245s Unpacking libboost-regex1.83-dev:armhf (1.83.0-4.1ubuntu2) ... 245s Selecting previously unselected package libboost-regex-dev:armhf. 245s Preparing to unpack .../15-libboost-regex-dev_1.83.0.2ubuntu1_armhf.deb ... 245s Unpacking libboost-regex-dev:armhf (1.83.0.2ubuntu1) ... 245s Selecting previously unselected package libcifpp-data. 245s Preparing to unpack .../16-libcifpp-data_7.0.9-1_all.deb ... 245s Unpacking libcifpp-data (7.0.9-1) ... 245s Selecting previously unselected package libcifpp7:armhf. 245s Preparing to unpack .../17-libcifpp7_7.0.9-1_armhf.deb ... 245s Unpacking libcifpp7:armhf (7.0.9-1) ... 245s Selecting previously unselected package zlib1g-dev:armhf. 245s Preparing to unpack .../18-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_armhf.deb ... 245s Unpacking zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 245s Selecting previously unselected package libcifpp-dev:armhf. 245s Preparing to unpack .../19-libcifpp-dev_7.0.9-1_armhf.deb ... 245s Unpacking libcifpp-dev:armhf (7.0.9-1) ... 245s Selecting previously unselected package libzeep5.1. 245s Preparing to unpack .../20-libzeep5.1_5.1.8-1build1_armhf.deb ... 245s Unpacking libzeep5.1 (5.1.8-1build1) ... 245s Selecting previously unselected package tortoize. 245s Preparing to unpack .../21-tortoize_2.0.13-1_armhf.deb ... 245s Unpacking tortoize (2.0.13-1) ... 245s Setting up libboost-regex1.83.0:armhf (1.83.0-4.1ubuntu2) ... 245s Setting up linux-libc-dev:armhf (6.14.0-10.10) ... 245s Setting up libgomp1:armhf (15-20250222-0ubuntu1) ... 245s Setting up rpcsvc-proto (1.4.2-0ubuntu7) ... 245s Setting up icu-devtools (76.1-1ubuntu2) ... 245s Setting up libcifpp-data (7.0.9-1) ... 246s Setting up libubsan1:armhf (15-20250222-0ubuntu1) ... 246s Setting up libcrypt-dev:armhf (1:4.4.38-1) ... 246s Setting up libasan8:armhf (15-20250222-0ubuntu1) ... 246s Setting up libgcc-14-dev:armhf (14.2.0-17ubuntu3) ... 246s Setting up libzeep5.1 (5.1.8-1build1) ... 246s Setting up libc-dev-bin (2.41-1ubuntu2) ... 246s Setting up libcifpp7:armhf (7.0.9-1) ... 246s Setting up libc6-dev:armhf (2.41-1ubuntu2) ... 246s Setting up libstdc++-14-dev:armhf (14.2.0-17ubuntu3) ... 246s Setting up libicu-dev:armhf (76.1-1ubuntu2) ... 246s Setting up libboost1.83-dev:armhf (1.83.0-4.1ubuntu2) ... 246s Setting up tortoize (2.0.13-1) ... 246s Setting up libboost-regex1.83-dev:armhf (1.83.0-4.1ubuntu2) ... 246s Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 246s Setting up libboost-regex-dev:armhf (1.83.0.2ubuntu1) ... 246s Setting up libcifpp-dev:armhf (7.0.9-1) ... 246s Processing triggers for man-db (2.13.0-1) ... 246s Processing triggers for libc-bin (2.41-1ubuntu2) ... 254s autopkgtest [10:36:58]: test run-unit-test: [----------------------- 257s + pkg=tortoize 257s + testfile=/usr/share/doc/libcifpp-dev/examples/1cbs.cif.gz 257s + '[' /tmp/autopkgtest.RtPhsk/autopkgtest_tmp = '' ']' 257s + cd /tmp/autopkgtest.RtPhsk/autopkgtest_tmp 257s + tortoize /usr/share/doc/libcifpp-dev/examples/1cbs.cif.gz 1cbs.json 257s 257s Configuration error: 257s 257s The attempt to retrieve compound information for "ALA" failed. 257s 257s This information is searched for in a CCD file called components.cif or 257s components.cif.gz which should be located in one of the following directories: 257s 257s "/var/cache/libcifpp" 257s "/usr/share/libcifpp" 257s "/usr/share/libcifpp" 257s 257s (Note that you can add a directory to the search paths by setting the 257s LIBCIFPP_DATA_DIR environmental variable) 257s 257s On Linux an optional cron script might have been installed that automatically updates 257s components.cif and mmCIF dictionary files. This script only works when the file 257s libcifpp.conf contains an uncommented line with the text: 257s 257s update=true 257s 257s If you do not have a working cron script, you can manually update the files 257s in /var/cache/libcifpp using the following commands: 257s 257s curl -o /var/cache/libcifpp/components.cif https://files.wwpdb.org/pub/pdb/data/monomers/components.cif 257s curl -o /var/cache/libcifpp/mmcif_pdbx.dic https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic 257s curl -o /var/cache/libcifpp/mmcif_ma.dic https://github.com/ihmwg/ModelCIF/raw/master/dist/mmcif_ma.dic 257s 257s The current order of compound factory objects is: 257s 257s CCD components.cif resource 257s Unknown compound: ALA 257s Unknown compound: ARG 257s Unknown compound: ASN 257s Unknown compound: ASP 257s Unknown compound: CYS 257s Unknown compound: GLN 257s Unknown compound: GLU 257s Unknown compound: GLY 257s Unknown compound: HOH 257s Unknown compound: ILE 257s Unknown compound: LEU 257s Unknown compound: LYS 257s Unknown compound: MET 257s Unknown compound: PHE 257s Unknown compound: PRO 257s Unknown compound: REA 257s Unknown compound: SER 257s Unknown compound: THR 257s Unknown compound: TRP 257s Unknown compound: TYR 257s Unknown compound: VAL 257s Missing compound information for PRO 257s Missing compound information for ASN 257s Missing compound information for PHE 257s Missing compound information for SER 257s Missing compound information for GLY 257s Missing compound information for TRP 257s Missing compound information for LYS 257s Missing compound information for ILE 257s Missing compound information for ARG 257s Missing compound information for GLU 257s Missing compound information for LEU 257s Missing compound information for VAL 257s Missing compound information for MET 257s Missing compound information for ALA 257s Missing compound information for GLN 257s Missing compound information for ASP 257s Missing compound information for THR 257s Missing compound information for TYR 257s Missing compound information for CYS 257s Missing compound information for REA 257s Missing compound information for HOH 257s + '[' -s 1cbs.json ']' 257s autopkgtest [10:37:01]: test run-unit-test: -----------------------] 261s run-unit-test PASS 261s autopkgtest [10:37:05]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 265s autopkgtest [10:37:09]: @@@@@@@@@@@@@@@@@@@@ summary 265s run-unit-test PASS