0s autopkgtest [18:02:57]: starting date and time: 2025-03-15 18:02:57+0000 0s autopkgtest [18:02:57]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [18:02:57]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.x3uad6ip/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade tigr-glimmer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.171 lxd-armhf-10.145.243.171:autopkgtest/ubuntu/plucky/armhf 21s autopkgtest [18:03:18]: testbed dpkg architecture: armhf 24s autopkgtest [18:03:21]: testbed apt version: 2.9.33 28s autopkgtest [18:03:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 30s autopkgtest [18:03:27]: testbed release detected to be: None 37s autopkgtest [18:03:34]: updating testbed package index (apt update) 39s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 40s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 40s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 40s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 41s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 41s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 41s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 41s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [114 kB] 41s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1832 B] 41s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 41s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [312 kB] 41s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [11.1 kB] 41s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 41s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 41s Get:15 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 42s Get:16 http://ftpmaster.internal/ubuntu plucky/main Sources [1394 kB] 43s Get:17 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 63s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 64s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 64s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 64s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 81s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 82s Fetched 41.0 MB in 43s (961 kB/s) 83s Reading package lists... 96s autopkgtest [18:04:33]: upgrading testbed (apt dist-upgrade and autopurge) 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 99s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 99s Starting 2 pkgProblemResolver with broken count: 0 99s Done 99s Entering ResolveByKeep 100s 100s Calculating upgrade... 100s The following packages will be upgraded: 100s libc-bin libc6 locales pinentry-curses python3-jinja2 sos strace 101s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s Need to get 8683 kB of archives. 101s After this operation, 23.6 kB of additional disk space will be used. 101s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 103s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 103s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 107s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 107s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 107s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 107s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 108s Preconfiguring packages ... 108s Fetched 8683 kB in 7s (1177 kB/s) 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 108s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 109s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 109s Setting up libc6:armhf (2.41-1ubuntu2) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 109s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 109s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 109s Setting up libc-bin (2.41-1ubuntu2) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 109s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 109s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 110s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 110s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 110s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 110s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 110s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 110s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 110s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 110s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 110s Setting up sos (4.9.0-5) ... 111s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 111s Setting up locales (2.41-1ubuntu2) ... 112s Generating locales (this might take a while)... 113s en_US.UTF-8... done 113s Generation complete. 113s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 113s Setting up strace (6.13+ds-1ubuntu1) ... 113s Processing triggers for man-db (2.13.0-1) ... 115s Processing triggers for systemd (257.3-1ubuntu3) ... 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 118s Starting pkgProblemResolver with broken count: 0 118s Starting 2 pkgProblemResolver with broken count: 0 118s Done 118s Solving dependencies... 119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 121s autopkgtest [18:04:58]: rebooting testbed after setup commands that affected boot 161s autopkgtest [18:05:38]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 186s autopkgtest [18:06:03]: @@@@@@@@@@@@@@@@@@@@ apt-source tigr-glimmer 203s Get:1 http://ftpmaster.internal/ubuntu plucky/universe tigr-glimmer 3.02b-6 (dsc) [2104 B] 203s Get:2 http://ftpmaster.internal/ubuntu plucky/universe tigr-glimmer 3.02b-6 (tar) [5638 kB] 203s Get:3 http://ftpmaster.internal/ubuntu plucky/universe tigr-glimmer 3.02b-6 (diff) [20.5 kB] 203s gpgv: Signature made Sat Oct 16 18:40:48 2021 UTC 203s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 203s gpgv: issuer "emollier@debian.org" 203s gpgv: Can't check signature: No public key 203s dpkg-source: warning: cannot verify inline signature for ./tigr-glimmer_3.02b-6.dsc: no acceptable signature found 203s autopkgtest [18:06:20]: testing package tigr-glimmer version 3.02b-6 205s autopkgtest [18:06:22]: build not needed 208s autopkgtest [18:06:25]: test run-unit-test: preparing testbed 210s Reading package lists... 210s Building dependency tree... 210s Reading state information... 210s Starting pkgProblemResolver with broken count: 0 210s Starting 2 pkgProblemResolver with broken count: 0 211s Done 211s The following NEW packages will be installed: 211s tigr-glimmer 211s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 211s Need to get 273 kB of archives. 211s After this operation, 633 kB of additional disk space will be used. 211s Get:1 http://ftpmaster.internal/ubuntu plucky/universe armhf tigr-glimmer armhf 3.02b-6 [273 kB] 212s Fetched 273 kB in 1s (514 kB/s) 212s Selecting previously unselected package tigr-glimmer. 212s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 212s Preparing to unpack .../tigr-glimmer_3.02b-6_armhf.deb ... 212s Unpacking tigr-glimmer (3.02b-6) ... 212s Setting up tigr-glimmer (3.02b-6) ... 212s Processing triggers for man-db (2.13.0-1) ... 220s autopkgtest [18:06:37]: test run-unit-test: [----------------------- 222s Begin Test 222s Starting at Sat Mar 15 18:06:39 2025 222s 222s Sequence file = example.fa 222s Excluded regions file = none 222s Circular genome = true 222s Initial minimum gene length = 90 bp 222s Determine optimal min gene length to maximize number of genes 222s Maximum overlap bases = 30 222s Start codons = atg,gtg,ttg 222s Stop codons = taa,tag,tga 222s Sequence length = 149 222s Final minimum gene length = 90 222s Number of genes = 1 222s Total bases = 114 222s Starting at Sat Mar 15 18:06:39 2025 222s 222s Sequence file = example.fa 222s Number of sequences = 4 222s ICM model file = test1.icm 222s Excluded regions file = none 222s List of orfs file = none 222s Input is NOT separate orfs 222s Independent (non-coding) scores are used 222s Circular genome = true 222s Truncated orfs = false 222s Minimum gene length = 100 bp 222s Maximum overlap bases = 30 222s Threshold score = 30 222s Use first start codon = false 222s Start codons = atg,gtg,ttg 222s Start probs = 0.600,0.300,0.100 222s Stop codons = taa,tag,tga 222s GC percentage = 81.4% 222s Ignore score on orfs longer than 3683 222s Analyzing Sequence #1 222s Start Find_Orfs 222s Start Score_Orfs 222s Start Process_Events 222s Start Trace_Back 222s Analyzing Sequence #2 222s Start Find_Orfs 222s Start Score_Orfs 222s Start Process_Events 222s Start Trace_Back 222s Analyzing Sequence #3 222s Start Find_Orfs 222s Start Score_Orfs 222s ---------------Passed!---------------------------- 222s Start Process_Events 222s Start Trace_Back 222s Analyzing Sequence #4 222s Start Find_Orfs 222s Start Score_Orfs 222s Start Process_Events 222s Start Trace_Back 222s autopkgtest [18:06:39]: test run-unit-test: -----------------------] 226s run-unit-test PASS 226s autopkgtest [18:06:43]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 230s autopkgtest [18:06:47]: @@@@@@@@@@@@@@@@@@@@ summary 230s run-unit-test PASS