0s autopkgtest [06:29:38]: starting date and time: 2024-11-14 06:29:38+0000 0s autopkgtest [06:29:38]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [06:29:38]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.v53rtbcb/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade tiddit --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- lxd -r lxd-armhf-10.145.243.21 lxd-armhf-10.145.243.21:autopkgtest/ubuntu/plucky/armhf 56s autopkgtest [06:30:34]: testbed dpkg architecture: armhf 58s autopkgtest [06:30:36]: testbed apt version: 2.9.8 58s autopkgtest [06:30:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup 67s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 67s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [987 kB] 67s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [98.6 kB] 67s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.4 kB] 67s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 67s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [103 kB] 67s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [684 kB] 68s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [5040 B] 68s Fetched 1973 kB in 1s (2315 kB/s) 68s Reading package lists... 85s tee: /proc/self/fd/2: Permission denied 107s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 107s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 107s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 107s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 108s Reading package lists... 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 109s Calculating upgrade... 109s The following packages were automatically installed and are no longer required: 109s libperl5.38t64 perl-modules-5.38 python3-netifaces 109s Use 'apt autoremove' to remove them. 110s The following NEW packages will be installed: 110s libperl5.40 perl-modules-5.40 python3.13-gdbm systemd-cryptsetup 110s The following packages will be upgraded: 110s apport apport-core-dump-handler base-files base-passwd bash-completion 110s dhcpcd-base distro-info-data dpkg dpkg-dev fwupd gcc-14-base info 110s install-info iproute2 libarchive13t64 libatomic1 libattr1 110s libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3 110s libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3 110s libblockdev3 libbpf1 libbsd0 libbytesize-common libbytesize1 libdb5.3t64 110s libdpkg-perl libdrm-common libdrm2 libdw1t64 libedit2 libelf1t64 libevdev2 110s libfastjson4 libflashrom1 libftdi1-2 libfwupd2 libgcc-s1 libgnutls30t64 110s libgpgme11t64 libinih1 libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common 110s libkeyutils1 libldap-common libldap2 liblocale-gettext-perl libmaxminddb0 110s libmnl0 libnetfilter-conntrack3 libnetplan1 libnewt0.52 libnghttp2-14 110s libnspr4 libnss-systemd libnvme1t64 libpam-systemd libpipeline1 libplymouth5 110s libpng16-16t64 libpopt0 libpython3-stdlib libpython3.12-minimal 110s libpython3.12-stdlib libsgutils2-1.46-2 libssh2-1t64 libstdc++6 110s libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl 110s libtraceevent1 libtraceevent1-plugin libudev1 libudisks2-0 liburcu8t64 110s libutempter0 libuv1t64 libx11-6 libx11-data libxau6 libxmlb2 mawk 110s motd-news-config nano netplan-generator netplan.io openssh-client 110s openssh-server openssh-sftp-server pci.ids perl perl-base plymouth 110s plymouth-theme-ubuntu-text python3 python3-apport python3-certifi 110s python3-cffi-backend python3-configobj python3-gdbm python3-gi python3-idna 110s python3-jaraco.functools python3-json-pointer python3-jsonpatch 110s python3-lazr.restfulclient python3-lazr.uri python3-minimal 110s python3-more-itertools python3-netplan python3-newt python3-oauthlib 110s python3-problem-report python3-typeguard python3-urllib3 python3-wadllib 110s python3-zipp python3.12 python3.12-gdbm python3.12-minimal sg3-utils 110s sg3-utils-udev ssh-import-id systemd systemd-resolved systemd-sysv 110s systemd-timesyncd tzdata udev udisks2 ufw usbutils vim-common vim-tiny 110s whiptail xxd 110s 143 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 110s Need to get 45.5 MB of archives. 110s After this operation, 43.2 MB of additional disk space will be used. 110s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf motd-news-config all 13.5ubuntu3 [5190 B] 110s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf base-files armhf 13.5ubuntu3 [75.1 kB] 110s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg armhf 1.22.11ubuntu3 [1247 kB] 110s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-7 [3214 kB] 110s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-7 [4139 kB] 110s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-7 [263 kB] 110s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-7 [1674 kB] 110s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf liblocale-gettext-perl armhf 1.07-7build1 [15.0 kB] 110s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-iconv-perl armhf 1.7-8build4 [12.8 kB] 110s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-charwidth-perl armhf 0.04-11build4 [9128 B] 110s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [655 kB] 110s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf base-passwd armhf 3.6.5 [53.2 kB] 110s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB] 110s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB] 110s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf tzdata all 2024b-1ubuntu2 [274 kB] 111s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12 armhf 3.12.7-3 [661 kB] 111s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-stdlib armhf 3.12.7-3 [1934 kB] 111s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-minimal armhf 3.12.7-3 [2012 kB] 111s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-minimal armhf 3.12.7-3 [822 kB] 111s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB] 111s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libnss-systemd armhf 256.5-2ubuntu4 [155 kB] 111s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-timesyncd armhf 256.5-2ubuntu4 [40.7 kB] 111s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-resolved armhf 256.5-2ubuntu4 [309 kB] 111s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd-shared armhf 256.5-2ubuntu4 [2129 kB] 111s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd0 armhf 256.5-2ubuntu4 [428 kB] 111s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-sysv armhf 256.5-2ubuntu4 [11.9 kB] 111s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libpam-systemd armhf 256.5-2ubuntu4 [226 kB] 111s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf systemd armhf 256.5-2ubuntu4 [3442 kB] 111s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf udev armhf 256.5-2ubuntu4 [1949 kB] 111s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libudev1 armhf 256.5-2ubuntu4 [188 kB] 111s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf python3-problem-report all 2.30.0-0ubuntu5 [25.0 kB] 111s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf python3-apport all 2.30.0-0ubuntu5 [93.2 kB] 111s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf python3-gi armhf 3.50.0-3 [227 kB] 111s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf apport-core-dump-handler all 2.30.0-0ubuntu5 [17.9 kB] 111s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf apport all 2.30.0-0ubuntu5 [83.0 kB] 111s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libbsd0 armhf 0.12.2-2 [36.8 kB] 111s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libedit2 armhf 3.1-20240808-1 [79.0 kB] 111s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-sftp-server armhf 1:9.7p1-7ubuntu5 [35.4 kB] 111s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-server armhf 1:9.7p1-7ubuntu5 [505 kB] 111s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-client armhf 1:9.7p1-7ubuntu5 [889 kB] 111s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-8ubuntu1 [7846 B] 111s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-8ubuntu1 [51.5 kB] 111s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-8ubuntu1 [711 kB] 111s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-8ubuntu1 [40.8 kB] 111s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libattr1 armhf 1:2.5.2-2 [10.5 kB] 111s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB] 111s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf install-info armhf 7.1.1-1 [61.4 kB] 111s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf mawk armhf 1.3.4.20240905-1 [116 kB] 111s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf dhcpcd-base armhf 1:10.1.0-2 [188 kB] 111s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf distro-info-data all 0.63 [6588 B] 111s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB] 111s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libelf1t64 armhf 0.192-4 [50.2 kB] 111s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libbpf1 armhf 1:1.5.0-1 [158 kB] 111s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libmnl0 armhf 1.0.5-3 [10.7 kB] 111s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf iproute2 armhf 6.10.0-2ubuntu1 [1082 kB] 111s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libfastjson4 armhf 1.2304.0-2 [20.2 kB] 111s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-c5 armhf 0.18+ds-1 [33.2 kB] 111s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libkeyutils1 armhf 1.6.3-4ubuntu2 [8712 B] 111s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf netplan-generator armhf 1.1.1-1 [60.4 kB] 111s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cffi-backend armhf 1.17.1-2 [68.7 kB] 111s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf python3-netplan armhf 1.1.1-1 [24.1 kB] 111s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf netplan.io armhf 1.1.1-1 [66.4 kB] 111s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libnetplan1 armhf 1.1.1-1 [122 kB] 111s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf python3-newt armhf 0.52.24-2ubuntu4 [19.7 kB] 111s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf libnewt0.52 armhf 0.52.24-2ubuntu4 [39.2 kB] 111s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf libpopt0 armhf 1.19+dfsg-2 [25.4 kB] 111s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf vim-tiny armhf 2:9.1.0777-1ubuntu1 [693 kB] 111s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf vim-common all 2:9.1.0777-1ubuntu1 [394 kB] 111s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf whiptail armhf 0.52.24-2ubuntu4 [17.2 kB] 111s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf xxd armhf 2:9.1.0777-1ubuntu1 [66.8 kB] 111s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf bash-completion all 1:2.14.0-2 [210 kB] 111s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf info armhf 7.1.1-1 [126 kB] 111s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm-common all 2.4.123-1 [8436 B] 111s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm2 armhf 2.4.123-1 [36.5 kB] 111s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libevdev2 armhf 1.13.3+dfsg-1 [29.7 kB] 111s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libmaxminddb0 armhf 1.11.0-1 [16.8 kB] 111s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libnetfilter-conntrack3 armhf 1.1.0-1 [38.4 kB] 111s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libnghttp2-14 armhf 1.64.0-1 [68.9 kB] 111s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libpipeline1 armhf 1.5.8-1 [26.9 kB] 111s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf libpng16-16t64 armhf 1.6.44-2 [168 kB] 111s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf libplymouth5 armhf 24.004.60-1ubuntu11 [140 kB] 111s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1-plugin armhf 1:1.8.3-1ubuntu1 [18.1 kB] 111s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1 armhf 1:1.8.3-1ubuntu1 [52.1 kB] 111s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf liburcu8t64 armhf 0.14.1-1 [56.6 kB] 111s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf libuv1t64 armhf 1.48.0-7 [83.3 kB] 112s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-data all 2:1.8.10-2 [116 kB] 112s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-6 armhf 2:1.8.10-2 [587 kB] 112s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf libxau6 armhf 1:1.0.11-1 [6558 B] 112s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.2-1 [276 kB] 112s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf pci.ids all 0.0~2024.10.24-1 [279 kB] 112s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu11 [9920 B] 112s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth armhf 24.004.60-1ubuntu11 [142 kB] 112s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-gdbm armhf 3.12.7-3 [28.7 kB] 112s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 112s Get:95 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 112s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf ufw all 0.36.2-8 [170 kB] 112s Get:97 http://ftpmaster.internal/ubuntu plucky/main armhf usbutils armhf 1:018-1 [76.1 kB] 112s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg-dev all 1.22.11ubuntu3 [1088 kB] 112s Get:99 http://ftpmaster.internal/ubuntu plucky/main armhf libdpkg-perl all 1.22.11ubuntu3 [279 kB] 112s Get:100 http://ftpmaster.internal/ubuntu plucky/main armhf libarchive13t64 armhf 3.7.4-1.1 [331 kB] 112s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7 [25.7 kB] 112s Get:102 http://ftpmaster.internal/ubuntu plucky/main armhf libflashrom1 armhf 1.4.0-3ubuntu1 [141 kB] 112s Get:103 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 112s Get:104 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB] 112s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd2 armhf 1.9.26-2 [125 kB] 112s Get:106 http://ftpmaster.internal/ubuntu plucky/main armhf libxmlb2 armhf 0.3.21-1 [57.7 kB] 112s Get:107 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 1.9.26-2 [4404 kB] 113s Get:108 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-utils3 armhf 3.2.1-1 [17.4 kB] 113s Get:109 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-crypto3 armhf 3.2.1-1 [22.4 kB] 113s Get:110 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-fs3 armhf 3.2.1-1 [34.3 kB] 113s Get:111 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-loop3 armhf 3.2.1-1 [6552 B] 113s Get:112 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize1 armhf 2.11-1ubuntu1 [12.0 kB] 113s Get:113 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize-common all 2.11-1ubuntu1 [3584 B] 113s Get:114 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-mdraid3 armhf 3.2.1-1 [13.4 kB] 113s Get:115 http://ftpmaster.internal/ubuntu plucky/main armhf libnvme1t64 armhf 1.11-1 [73.8 kB] 113s Get:116 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-nvme3 armhf 3.2.1-1 [17.6 kB] 113s Get:117 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-part3 armhf 3.2.1-1 [16.5 kB] 113s Get:118 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-swap3 armhf 3.2.1-1 [8952 B] 113s Get:119 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev3 armhf 3.2.1-1 [44.2 kB] 113s Get:120 http://ftpmaster.internal/ubuntu plucky/main armhf libgpgme11t64 armhf 1.23.2-5ubuntu4 [123 kB] 113s Get:121 http://ftpmaster.internal/ubuntu plucky/main armhf libinih1 armhf 58-1ubuntu1 [6750 B] 113s Get:122 http://ftpmaster.internal/ubuntu plucky/main armhf libldap-common all 2.6.8+dfsg-1~exp4ubuntu3 [32.3 kB] 113s Get:123 http://ftpmaster.internal/ubuntu plucky/main armhf libldap2 armhf 2.6.8+dfsg-1~exp4ubuntu3 [173 kB] 113s Get:124 http://ftpmaster.internal/ubuntu plucky/main armhf libnspr4 armhf 2:4.35-1.1ubuntu2 [94.1 kB] 113s Get:125 http://ftpmaster.internal/ubuntu plucky/main armhf libsgutils2-1.46-2 armhf 1.46-3ubuntu5 [82.5 kB] 113s Get:126 http://ftpmaster.internal/ubuntu plucky/main armhf libssh2-1t64 armhf 1.11.1-1 [116 kB] 113s Get:127 http://ftpmaster.internal/ubuntu plucky/main armhf udisks2 armhf 2.10.1-11ubuntu1 [278 kB] 113s Get:128 http://ftpmaster.internal/ubuntu plucky/main armhf libudisks2-0 armhf 2.10.1-11ubuntu1 [142 kB] 113s Get:129 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B] 113s Get:130 http://ftpmaster.internal/ubuntu plucky/main armhf python3-certifi all 2024.8.30+dfsg-1 [9742 B] 113s Get:131 http://ftpmaster.internal/ubuntu plucky/main armhf python3-configobj all 5.0.9-1 [33.9 kB] 113s Get:132 http://ftpmaster.internal/ubuntu plucky/main armhf python3-idna all 3.8-2 [47.0 kB] 113s Get:133 http://ftpmaster.internal/ubuntu plucky/main armhf python3-more-itertools all 10.5.0-1 [56.2 kB] 113s Get:134 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jaraco.functools all 4.1.0-1 [11.8 kB] 113s Get:135 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-2 [8396 B] 113s Get:136 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jsonpatch all 1.32-4 [12.2 kB] 113s Get:137 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.uri all 1.0.6-4 [13.6 kB] 113s Get:138 http://ftpmaster.internal/ubuntu plucky/main armhf python3-wadllib all 2.0.0-1 [36.7 kB] 113s Get:139 http://ftpmaster.internal/ubuntu plucky/main armhf python3-oauthlib all 3.2.2-2 [89.8 kB] 113s Get:140 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.restfulclient all 0.14.6-2 [50.9 kB] 113s Get:141 http://ftpmaster.internal/ubuntu plucky/main armhf python3-typeguard all 4.4.1-1 [29.0 kB] 113s Get:142 http://ftpmaster.internal/ubuntu plucky/main armhf python3-urllib3 all 2.0.7-2ubuntu0.1 [93.1 kB] 113s Get:143 http://ftpmaster.internal/ubuntu plucky/main armhf python3-zipp all 3.21.0-1 [10.2 kB] 113s Get:144 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils armhf 1.46-3ubuntu5 [816 kB] 113s Get:145 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils-udev all 1.46-3ubuntu5 [5916 B] 113s Get:146 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-cryptsetup armhf 256.5-2ubuntu4 [122 kB] 113s Get:147 http://ftpmaster.internal/ubuntu plucky/main armhf ssh-import-id all 5.11-0ubuntu3 [10.1 kB] 113s Preconfiguring packages ... 114s Fetched 45.5 MB in 3s (13.3 MB/s) 114s (Reading database ... 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(0.18+ds-1) ... 126s Setting up libevdev2:armhf (1.13.3+dfsg-1) ... 126s Setting up libldap2:armhf (2.6.8+dfsg-1~exp4ubuntu3) ... 126s Setting up info (7.1.1-1) ... 126s Setting up liblocale-gettext-perl (1.07-7build1) ... 126s Setting up libbpf1:armhf (1:1.5.0-1) ... 126s Setting up libudisks2-0:armhf (2.10.1-11ubuntu1) ... 126s Setting up python3.13-gdbm (3.13.0-2) ... 126s Setting up libpopt0:armhf (1.19+dfsg-2) ... 126s Setting up sg3-utils (1.46-3ubuntu5) ... 126s Setting up python3.12-minimal (3.12.7-3) ... 127s Setting up libpython3.12-stdlib:armhf (3.12.7-3) ... 127s Setting up libblockdev-mdraid3:armhf (3.2.1-1) ... 127s Setting up libblockdev-crypto3:armhf (3.2.1-1) ... 127s Setting up libblockdev-swap3:armhf (3.2.1-1) ... 127s Setting up iproute2 (6.10.0-2ubuntu1) ... 127s Setting up openssh-client (1:9.7p1-7ubuntu5) ... 127s Setting up python3.12 (3.12.7-3) ... 128s Setting up libblockdev-loop3:armhf (3.2.1-1) ... 128s Setting up systemd (256.5-2ubuntu4) ... 128s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. 128s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 128s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. 129s Setting up vim-tiny (2:9.1.0777-1ubuntu1) ... 129s Setting up libblockdev3:armhf (3.2.1-1) ... 129s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ... 129s Setting up libjson-glib-1.0-0:armhf (1.10.0+ds-3) ... 129s Setting up libblockdev-part3:armhf (3.2.1-1) ... 129s Setting up sg3-utils-udev (1.46-3ubuntu5) ... 129s update-initramfs: deferring update (trigger activated) 129s Setting up libperl5.40:armhf (5.40.0-7) ... 129s Setting up perl (5.40.0-7) ... 129s Setting up systemd-cryptsetup (256.5-2ubuntu4) ... 129s Setting up libnvme1t64 (1.11-1) ... 129s Setting up systemd-timesyncd (256.5-2ubuntu4) ... 129s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 129s Setting up udev (256.5-2ubuntu4) ... 130s Setting up libdpkg-perl (1.22.11ubuntu3) ... 130s Setting up libblockdev-nvme3:armhf (3.2.1-1) ... 130s Setting up libdrm2:armhf (2.4.123-1) ... 130s Setting up whiptail (0.52.24-2ubuntu4) ... 130s Setting up libtraceevent1-plugin:armhf (1:1.8.3-1ubuntu1) ... 130s Setting up libplymouth5:armhf (24.004.60-1ubuntu11) ... 130s Setting up netplan-generator (1.1.1-1) ... 130s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 130s Setting up libpython3-stdlib:armhf (3.12.7-1) ... 130s Setting up systemd-resolved (256.5-2ubuntu4) ... 131s Setting up openssh-sftp-server (1:9.7p1-7ubuntu5) ... 131s Setting up udisks2 (2.10.1-11ubuntu1) ... 131s vda: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/uevent': Permission denied 131s vda1: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied 131s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied 131s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied 131s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied 131s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied 131s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied 131s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied 131s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied 131s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied 131s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied 131s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied 131s loop8: Failed to write 'change' to '/sys/devices/virtual/block/loop8/uevent': Permission denied 132s Setting up systemd-sysv (256.5-2ubuntu4) ... 132s Setting up openssh-server (1:9.7p1-7ubuntu5) ... 132s Setting up plymouth (24.004.60-1ubuntu11) ... 132s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 133s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 133s Setting up libfwupd2:armhf (1.9.26-2) ... 133s Setting up libnss-systemd:armhf (256.5-2ubuntu4) ... 133s Setting up python3 (3.12.7-1) ... 133s Setting up python3-zipp (3.21.0-1) ... 133s Setting up python3-newt:armhf (0.52.24-2ubuntu4) ... 133s Setting up dpkg-dev (1.22.11ubuntu3) ... 133s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu11) ... 133s update-initramfs: deferring update (trigger activated) 133s Setting up python3-oauthlib (3.2.2-2) ... 134s Setting up python3-configobj (5.0.9-1) ... 134s Setting up python3-certifi (2024.8.30+dfsg-1) ... 134s Setting up python3-gi (3.50.0-3) ... 134s Setting up python3-idna (3.8-2) ... 134s Setting up python3-urllib3 (2.0.7-2ubuntu0.1) ... 134s Setting up python3-json-pointer (2.4-2) ... 134s Setting up libpam-systemd:armhf (256.5-2ubuntu4) ... 135s Setting up fwupd (1.9.26-2) ... 135s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 135s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 135s fwupd.service is a disabled or a static unit not running, not starting it. 135s Setting up python3-cffi-backend:armhf (1.17.1-2) ... 135s Setting up python3-more-itertools (10.5.0-1) ... 135s Setting up python3-jaraco.functools (4.1.0-1) ... 135s Setting up python3-gdbm:armhf (3.12.7-1) ... 135s Setting up python3-problem-report (2.30.0-0ubuntu5) ... 135s Setting up ssh-import-id (5.11-0ubuntu3) ... 136s Setting up python3-jsonpatch (1.32-4) ... 136s Setting up python3-typeguard (4.4.1-1) ... 136s Setting up ufw (0.36.2-8) ... 137s Setting up python3-lazr.uri (1.0.6-4) ... 137s Setting up python3-apport (2.30.0-0ubuntu5) ... 137s Setting up python3-wadllib (2.0.0-1) ... 137s Setting up python3-netplan (1.1.1-1) ... 137s Setting up python3-lazr.restfulclient (0.14.6-2) ... 137s Setting up netplan.io (1.1.1-1) ... 137s Setting up apport-core-dump-handler (2.30.0-0ubuntu5) ... 138s Setting up apport (2.30.0-0ubuntu5) ... 138s Installing new version of config file /etc/apport/crashdb.conf ... 139s apport-autoreport.service is a disabled or a static unit not running, not starting it. 139s Processing triggers for dbus (1.14.10-4ubuntu5) ... 139s Processing triggers for shared-mime-info (2.4-5) ... 139s Processing triggers for install-info (7.1.1-1) ... 139s Processing triggers for initramfs-tools (0.142ubuntu34) ... 139s Processing triggers for libc-bin (2.40-1ubuntu3) ... 139s Processing triggers for rsyslog (8.2406.0-1ubuntu2) ... 140s Processing triggers for man-db (2.12.1-3) ... 141s Reading package lists... 143s Building dependency tree... 143s Reading state information... 143s The following packages will be REMOVED: 143s libperl5.38t64* perl-modules-5.38* python3-netifaces* 143s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 143s After this operation, 41.7 MB disk space will be freed. 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61507 files and directories currently installed.) 143s Removing libperl5.38t64:armhf (5.38.2-5) ... 143s Removing perl-modules-5.38 (5.38.2-5) ... 143s Removing python3-netifaces:armhf (0.11.0-2build3) ... 143s Processing triggers for man-db (2.12.1-3) ... 143s Processing triggers for libc-bin (2.40-1ubuntu3) ... 145s autopkgtest [06:32:03]: rebooting testbed after setup commands that affected boot 214s autopkgtest [06:33:11]: testbed running kernel: Linux 6.8.0-47-generic #47~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Oct 2 16:39:14 UTC 2 240s autopkgtest [06:33:38]: @@@@@@@@@@@@@@@@@@@@ apt-source tiddit 251s Get:1 http://ftpmaster.internal/ubuntu plucky/universe tiddit 3.6.1+dfsg-1build1 (dsc) [2105 B] 251s Get:2 http://ftpmaster.internal/ubuntu plucky/universe tiddit 3.6.1+dfsg-1build1 (tar) [19.5 kB] 251s Get:3 http://ftpmaster.internal/ubuntu plucky/universe tiddit 3.6.1+dfsg-1build1 (diff) [1732 kB] 251s gpgv: Signature made Wed Apr 10 17:41:17 2024 UTC 251s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 251s gpgv: Can't check signature: No public key 251s dpkg-source: warning: cannot verify inline signature for ./tiddit_3.6.1+dfsg-1build1.dsc: no acceptable signature found 251s autopkgtest [06:33:49]: testing package tiddit version 3.6.1+dfsg-1build1 255s autopkgtest [06:33:53]: build not needed 261s autopkgtest [06:33:59]: test run-unit-test: preparing testbed 271s Reading package lists... 271s Building dependency tree... 271s Reading state information... 272s Starting pkgProblemResolver with broken count: 0 272s Starting 2 pkgProblemResolver with broken count: 0 272s Done 273s The following additional packages will be installed: 273s libblas3 libdeflate0 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 273s python3-joblib python3-numpy python3-pysam samtools tiddit 273s Suggested packages: 273s python-joblib-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 273s cwltool 273s Recommended packages: 273s python3-pytest python3-simplejson python3-psutil 273s The following NEW packages will be installed: 273s autopkgtest-satdep libblas3 libdeflate0 libgfortran5 libhts3t64 273s libhtscodecs2 liblapack3 python3-joblib python3-numpy python3-pysam samtools 273s tiddit 273s 0 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 273s Need to get 11.1 MB/11.1 MB of archives. 273s After this operation, 58.8 MB of additional disk space will be used. 273s Get:1 /tmp/autopkgtest.BhP1n0/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [712 B] 273s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 273s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.22-1 [38.9 kB] 273s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 274s Get:5 http://ftpmaster.internal/ubuntu plucky/universe armhf libhtscodecs2 armhf 1.6.1-1 [67.9 kB] 274s Get:6 http://ftpmaster.internal/ubuntu plucky/universe armhf libhts3t64 armhf 1.20+ds-1 [392 kB] 274s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 274s Get:8 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-joblib all 1.3.2-5 [206 kB] 274s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 274s Get:10 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pysam armhf 0.22.1+ds-2 [3383 kB] 274s Get:11 http://ftpmaster.internal/ubuntu plucky/universe armhf samtools armhf 1.20-3 [607 kB] 274s Get:12 http://ftpmaster.internal/ubuntu plucky/universe armhf tiddit armhf 3.6.1+dfsg-1build1 [293 kB] 274s Fetched 11.1 MB in 1s (11.9 MB/s) 274s Selecting previously unselected package libblas3:armhf. 274s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59567 files and directories currently installed.) 274s Preparing to unpack .../00-libblas3_3.12.0-3build2_armhf.deb ... 274s Unpacking libblas3:armhf (3.12.0-3build2) ... 274s Selecting previously unselected package libdeflate0:armhf. 275s Preparing to unpack .../01-libdeflate0_1.22-1_armhf.deb ... 275s Unpacking libdeflate0:armhf (1.22-1) ... 275s Selecting previously unselected package libgfortran5:armhf. 275s Preparing to unpack .../02-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 275s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 275s Selecting previously unselected package libhtscodecs2:armhf. 275s Preparing to unpack .../03-libhtscodecs2_1.6.1-1_armhf.deb ... 275s Unpacking libhtscodecs2:armhf (1.6.1-1) ... 275s Selecting previously unselected package libhts3t64:armhf. 275s Preparing to unpack .../04-libhts3t64_1.20+ds-1_armhf.deb ... 275s Unpacking libhts3t64:armhf (1.20+ds-1) ... 275s Selecting previously unselected package liblapack3:armhf. 275s Preparing to unpack .../05-liblapack3_3.12.0-3build2_armhf.deb ... 275s Unpacking liblapack3:armhf (3.12.0-3build2) ... 275s Selecting previously unselected package python3-joblib. 275s Preparing to unpack .../06-python3-joblib_1.3.2-5_all.deb ... 275s Unpacking python3-joblib (1.3.2-5) ... 275s Selecting previously unselected package python3-numpy. 275s Preparing to unpack .../07-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 275s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 275s Selecting previously unselected package python3-pysam. 275s Preparing to unpack .../08-python3-pysam_0.22.1+ds-2_armhf.deb ... 275s Unpacking python3-pysam (0.22.1+ds-2) ... 275s Selecting previously unselected package samtools. 275s Preparing to unpack .../09-samtools_1.20-3_armhf.deb ... 275s Unpacking samtools (1.20-3) ... 275s Selecting previously unselected package tiddit. 275s Preparing to unpack .../10-tiddit_3.6.1+dfsg-1build1_armhf.deb ... 275s Unpacking tiddit (3.6.1+dfsg-1build1) ... 275s Selecting previously unselected package autopkgtest-satdep. 275s Preparing to unpack .../11-1-autopkgtest-satdep.deb ... 275s Unpacking autopkgtest-satdep (0) ... 275s Setting up libhtscodecs2:armhf (1.6.1-1) ... 275s Setting up python3-joblib (1.3.2-5) ... 276s Setting up libdeflate0:armhf (1.22-1) ... 276s Setting up libblas3:armhf (3.12.0-3build2) ... 276s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 276s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 276s Setting up libhts3t64:armhf (1.20+ds-1) ... 276s Setting up liblapack3:armhf (3.12.0-3build2) ... 276s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 276s Setting up python3-pysam (0.22.1+ds-2) ... 276s Setting up samtools (1.20-3) ... 276s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 278s Setting up tiddit (3.6.1+dfsg-1build1) ... 278s Setting up autopkgtest-satdep (0) ... 278s Processing triggers for man-db (2.12.1-3) ... 278s Processing triggers for libc-bin (2.40-1ubuntu3) ... 290s (Reading database ... 61120 files and directories currently installed.) 290s Removing autopkgtest-satdep (0) ... 296s autopkgtest [06:34:34]: test run-unit-test: [----------------------- 298s + echo 'Test 1' 298s + tiddit --cov --bam normal.bam -o test1 298s Test 1 309s + tiddit --cov -w --bam normal.bam -o test1 316s + for f in test1.* 316s + '[' -s test1.bed ']' 316s + cat test1.bed 316s + tail -20 317s hs37d5 35468001 35468501 0.0 317s hs37d5 35468501 35469001 0.0 317s hs37d5 35469001 35469501 0.0 317s hs37d5 35469501 35470001 0.0 317s hs37d5 35470001 35470501 0.0 317s hs37d5 35470501 35471001 0.0 317s hs37d5 35471001 35471501 0.0 317s hs37d5 35471501 35472001 0.0 317s hs37d5 35472001 35472501 0.0 317s hs37d5 35472501 35473001 0.0 317s hs37d5 35473001 35473501 0.0 317s hs37d5 35473501 35474001 0.0 317s hs37d5 35474001 35474501 0.0 317s hs37d5 35474501 35475001 0.0 317s hs37d5 35475001 35475501 0.0 317s hs37d5 35475501 35476001 0.0 317s hs37d5 35476001 35476501 0.0 317s hs37d5 35476501 35477001 0.0 317s hs37d5 35477001 35477501 0.0 317s hs37d5 35477501 35477943 0.0 317s + for f in test1.* 317s + '[' -s test1.wig ']' 317s + cat test1.wig 317s + tail -20 317s + rm -f ./test1.bed ./test1.wig 317s 0.0 317s 0.0 317s 0.0 317s 0.0 317s 0.0 317s 0.0 317s 0.0 317s 0.0 317s 0.0 317s 0.0 317s 0.0 317s 0.0 317s 0.0 317s 0.0 317s 0.0 317s 0.0 317s 0.0 317s 0.0 317s 0.0 317s 0.0 317s + echo PASS 317s + echo 'Test 2' 317s + tiddit --cov --bam normal.bam -o test2 317s PASS 317s Test 2 327s + tiddit --cov -w --bam tumor.bam -o test2 333s + for f in test2.* 333s + '[' -s test2.bed ']' 333s + cat test2.bed 333s + tail -20 334s + for f in test2.* 334s + '[' -s test2.wig ']' 334s + cat test2.wig 334s + tail -20 334s hs37d5 35468001 35468501 0.0 334s hs37d5 35468501 35469001 0.0 334s hs37d5 35469001 35469501 0.0 334s hs37d5 35469501 35470001 0.0 334s hs37d5 35470001 35470501 0.0 334s hs37d5 35470501 35471001 0.0 334s hs37d5 35471001 35471501 0.0 334s hs37d5 35471501 35472001 0.0 334s hs37d5 35472001 35472501 0.0 334s hs37d5 35472501 35473001 0.0 334s hs37d5 35473001 35473501 0.0 334s hs37d5 35473501 35474001 0.0 334s hs37d5 35474001 35474501 0.0 334s hs37d5 35474501 35475001 0.0 334s hs37d5 35475001 35475501 0.0 334s hs37d5 35475501 35476001 0.0 334s hs37d5 35476001 35476501 0.0 334s hs37d5 35476501 35477001 0.0 334s hs37d5 35477001 35477501 0.0 334s hs37d5 35477501 35477943 0.0 334s 0.0 334s 0.0 334s 0.0 334s 0.0 334s 0.0 334s 0.0 334s 0.0 334s 0.0 334s 0.0 334s 0.0 334s 0.0 334s 0.0 334s 0.0 334s 0.0 334s 0.0 334s 0.0 334s 0.0 334s 0.0 334s 0.0 334s 0.0 334s + rm -f ./test2.bed ./test2.wig 334s + echo PASS 334s PASS 334s autopkgtest [06:35:12]: test run-unit-test: -----------------------] 339s autopkgtest [06:35:17]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 339s run-unit-test PASS 343s autopkgtest [06:35:21]: @@@@@@@@@@@@@@@@@@@@ summary 343s run-unit-test PASS