0s autopkgtest [18:05:41]: starting date and time: 2025-03-15 18:05:41+0000 0s autopkgtest [18:05:41]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [18:05:41]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bhpwi0e3/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade t-coffee --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.202 lxd-armhf-10.145.243.202:autopkgtest/ubuntu/plucky/armhf 20s autopkgtest [18:06:01]: testbed dpkg architecture: armhf 22s autopkgtest [18:06:03]: testbed apt version: 2.9.33 26s autopkgtest [18:06:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 28s autopkgtest [18:06:09]: testbed release detected to be: None 35s autopkgtest [18:06:16]: updating testbed package index (apt update) 37s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 38s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 38s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 38s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 38s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 38s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 39s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 39s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [114 kB] 39s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1832 B] 39s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 39s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [312 kB] 39s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [11.1 kB] 39s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 39s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 39s Get:15 http://ftpmaster.internal/ubuntu plucky/main Sources [1394 kB] 41s Get:16 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 63s Get:17 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 64s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 65s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 65s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 65s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 81s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 83s Fetched 41.0 MB in 45s (905 kB/s) 84s Reading package lists... 89s autopkgtest [18:07:10]: upgrading testbed (apt dist-upgrade and autopurge) 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 92s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 92s Starting 2 pkgProblemResolver with broken count: 0 92s Done 93s Entering ResolveByKeep 93s 93s Calculating upgrade... 94s The following packages will be upgraded: 94s libc-bin libc6 locales pinentry-curses python3-jinja2 sos strace 94s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s Need to get 8683 kB of archives. 94s After this operation, 23.6 kB of additional disk space will be used. 94s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 97s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 98s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 106s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 106s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 107s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 107s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 107s Preconfiguring packages ... 108s Fetched 8683 kB in 13s (656 kB/s) 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 108s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 108s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 108s Setting up libc6:armhf (2.41-1ubuntu2) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 108s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 108s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 108s Setting up libc-bin (2.41-1ubuntu2) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 109s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 109s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 109s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 109s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 109s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 109s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 109s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 109s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 109s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 109s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 109s Setting up sos (4.9.0-5) ... 110s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 110s Setting up locales (2.41-1ubuntu2) ... 111s Generating locales (this might take a while)... 112s en_US.UTF-8... done 112s Generation complete. 112s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 113s Setting up strace (6.13+ds-1ubuntu1) ... 113s Processing triggers for man-db (2.13.0-1) ... 114s Processing triggers for systemd (257.3-1ubuntu3) ... 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 117s Starting pkgProblemResolver with broken count: 0 117s Starting 2 pkgProblemResolver with broken count: 0 117s Done 117s Solving dependencies... 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s autopkgtest [18:07:41]: rebooting testbed after setup commands that affected boot 159s autopkgtest [18:08:20]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 183s autopkgtest [18:08:44]: @@@@@@@@@@@@@@@@@@@@ apt-source t-coffee 200s Get:1 http://ftpmaster.internal/ubuntu plucky/universe t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 (dsc) [2391 B] 200s Get:2 http://ftpmaster.internal/ubuntu plucky/universe t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 (tar) [3230 kB] 200s Get:3 http://ftpmaster.internal/ubuntu plucky/universe t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 (diff) [18.3 kB] 200s gpgv: Signature made Fri Nov 25 10:17:33 2022 UTC 200s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 200s gpgv: issuer "tille@debian.org" 200s gpgv: Can't check signature: No public key 200s dpkg-source: warning: cannot verify inline signature for ./t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1.dsc: no acceptable signature found 201s autopkgtest [18:09:02]: testing package t-coffee version 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 203s autopkgtest [18:09:04]: build not needed 206s autopkgtest [18:09:07]: test run-unit-test: preparing testbed 208s Reading package lists... 208s Building dependency tree... 208s Reading state information... 208s Starting pkgProblemResolver with broken count: 0 208s Starting 2 pkgProblemResolver with broken count: 0 208s Done 209s The following NEW packages will be installed: 209s t-coffee t-coffee-examples 209s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 209s Need to get 3620 kB of archives. 209s After this operation, 7793 kB of additional disk space will be used. 209s Get:1 http://ftpmaster.internal/ubuntu plucky/universe armhf t-coffee armhf 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [968 kB] 211s Get:2 http://ftpmaster.internal/ubuntu plucky/universe armhf t-coffee-examples all 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [2653 kB] 213s Fetched 3620 kB in 3s (1075 kB/s) 213s Selecting previously unselected package t-coffee. 213s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 213s Preparing to unpack .../t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1_armhf.deb ... 213s Unpacking t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... 213s Selecting previously unselected package t-coffee-examples. 213s Preparing to unpack .../t-coffee-examples_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1_all.deb ... 213s Unpacking t-coffee-examples (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... 213s Setting up t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... 213s Setting up t-coffee-examples (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... 213s Processing triggers for man-db (2.13.0-1) ... 223s autopkgtest [18:09:24]: test run-unit-test: [----------------------- 226s 226s PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 226s -full_log S [0] 226s -genepred_score S [0] nsd 226s -run_name S [0] 226s -mem_mode S [0] mem 226s -extend D [1] 1 226s -extend_mode S [0] very_fast_triplet 226s -max_n_pair D [0] 10 226s -seq_name_for_quadruplet S [0] all 226s -compact S [0] default 226s -clean S [0] no 226s -do_self FL [0] 0 226s -do_normalise D [0] 1000 226s -template_file S [0] 226s -setenv S [0] 0 226s -export S [0] 0 226s -template_mode S [0] 226s -flip D [0] 0 226s -remove_template_file D [0] 0 226s -profile_template_file S [0] 226s -in S [0] 226s -seq S [1] sample_rnaseq1.fasta 226s -aln S [0] 226s -method_limits S [0] 226s -method S [0] 226s -lib S [0] 226s -profile S [0] 226s -profile1 S [0] 226s -profile2 S [0] 226s -pdb S [0] 226s -relax_lib D [0] 1 226s -filter_lib D [0] 0 226s -shrink_lib D [0] 0 226s -out_lib W_F [0] no 226s -out_lib_mode S [0] primary 226s -lib_only D [0] 0 226s -outseqweight W_F [0] no 226s -seq_source S [0] ANY 226s -cosmetic_penalty D [0] 0 226s -gapopen D [0] 0 226s -gapext D [0] 0 226s -fgapopen D [0] 0 226s -fgapext D [0] 0 226s -nomatch D [0] 0 226s -newtree W_F [0] default 226s -tree W_F [0] NO 226s -usetree R_F [0] 226s -tree_mode S [0] nj 226s -distance_matrix_mode S [0] ktup 226s -distance_matrix_sim_mode S [0] idmat_sim1 226s -quicktree FL [0] 0 226s -outfile W_F [0] default 226s -maximise FL [1] 1 226s -output S [0] aln html 226s -len D [0] 0 226s -infile R_F [0] 226s -matrix S [0] default 226s -tg_mode D [0] 1 226s -profile_mode S [0] cw_profile_profile 226s -profile_comparison S [0] profile 226s -dp_mode S [0] linked_pair_wise 226s -ktuple D [0] 1 226s -ndiag D [0] 0 226s -diag_threshold D [0] 0 226s -diag_mode D [0] 0 226s -sim_matrix S [0] vasiliky 226s -transform S [0] 226s -extend_seq FL [0] 0 226s -outorder S [0] input 226s -inorder S [0] aligned 226s -seqnos S [0] off 226s -case S [0] keep 226s -cpu D [0] 0 226s -ulimit D [0] -1 226s -maxnseq D [0] -1 226s -maxlen D [0] -1 226s -sample_dp D [0] 0 226s -weight S [0] default 226s -seq_weight S [0] no 226s -align FL [1] 1 226s -mocca FL [0] 0 226s -domain FL [0] 0 226s -start D [0] 0 226s -len D [0] 0 226s -scale D [0] 0 226s -mocca_interactive FL [0] 0 226s -method_evaluate_mode S [0] default 226s -color_mode S [0] new 226s -aln_line_length D [0] 0 226s -evaluate_mode S [0] triplet 226s -get_type FL [0] 0 226s -clean_aln D [0] 0 226s -clean_threshold D [1] 1 226s -clean_iteration D [1] 1 226s -clean_evaluate_mode S [0] t_coffee_fast 226s -extend_matrix FL [0] 0 226s -prot_min_sim D [40] 40 226s -prot_max_sim D [90] 90 226s -prot_trim D [20] 20 226s -prot_min_cov D [40] 40 226s -pdb_type S [0] d 226s -pdb_min_sim D [35] 35 226s -pdb_max_sim D [100] 100 226s -pdb_min_cov D [50] 50 226s -pdb_blast_server W_F [0] EBI 226s -blast W_F [0] 226s -blast_server W_F [0] EBI 226s -pdb_db W_F [0] pdb 226s -protein_db W_F [0] uniref50 226s -method_log W_F [0] no 226s -struc_to_use S [0] 226s -cache W_F [0] use 226s -print_cache FL [0] 0 226s -align_pdb_param_file W_F [0] no 226s -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble 226s -external_aligner S [0] NO 226s -msa_mode S [0] tree 226s -et_mode S [0] et 226s -master S [0] no 226s -blast_nseq D [0] 0 226s -lalign_n_top D [0] 10 226s -iterate D [0] 0 226s -trim D [0] 0 226s -split D [0] 0 226s -trimfile S [0] default 226s -split D [0] 0 226s -split_nseq_thres D [0] 0 226s -split_score_thres D [0] 0 226s -check_pdb_status D [0] 0 226s -clean_seq_name D [0] 0 226s -seq_to_keep S [0] 226s -dpa_master_aln S [0] 226s -dpa_maxnseq D [0] 0 226s -dpa_min_score1 D [0] 226s -dpa_min_score2 D [0] 226s -dpa_keep_tmpfile FL [0] 0 226s -dpa_debug D [0] 0 226s -multi_core S [0] templates_jobs_relax_msa_evaluate 226s -n_core D [0] 1 226s -thread D [0] 1 226s -max_n_proc D [0] 0 226s -lib_list S [0] 226s -prune_lib_mode S [0] 5 226s -tip S [0] none 226s -rna_lib S [0] 226s -no_warning D [0] 0 226s -run_local_script D [0] 0 226s -proxy S [0] unset 226s -email S [0] 226s -clean_overaln D [0] 0 226s -overaln_param S [0] 226s -overaln_mode S [0] 226s -overaln_model S [0] 226s -overaln_threshold D [0] 0 226s -overaln_target D [0] 0 226s -overaln_P1 D [0] 0 226s -overaln_P2 D [0] 0 226s -overaln_P3 D [0] 0 226s -overaln_P4 D [0] 0 226s -exon_boundaries S [0] 226s -display D [0] 100 226s 226s INPUT FILES 226s Input File (S) sample_rnaseq1.fasta Format fasta_seq 226s Input File (M) proba_pair 226s 226s Identify Master Sequences [no]: 226s 226s Master Sequences Identified 226s INPUT SEQUENCES: 5 SEQUENCES [RNA] 226s Input File sample_rnaseq1.fasta Seq AC000104.1-17376_17496 Length 121 type RNA Struct Unchecked 226s Input File sample_rnaseq1.fasta Seq AC068303.10-12902_12788 Length 115 type RNA Struct Unchecked 226s Input File sample_rnaseq1.fasta Seq AC097725.2-33800_33915 Length 116 type RNA Struct Unchecked 226s Input File sample_rnaseq1.fasta Seq AL023594.2-7651_7766 Length 116 type RNA Struct Unchecked 226s Input File sample_rnaseq1.fasta Seq X15934.1-3_121 Length 119 type RNA Struct Unchecked 226s 226s Multi Core Mode: 1 processors: 226s 226s --- Process Method/Library/Aln Ssample_rnaseq1.fasta 226s xxx Retrieved Ssample_rnaseq1.fasta 226s --- Process Method/Library/Aln Mproba_pair 226s xxx Retrieved Mproba_pair 226s 226s All Methods Retrieved 226s 226s MANUAL PENALTIES: gapopen=0 gapext=0 226s 226s Library Total Size: [7026] 226s 226s Library Relaxation: Multi_proc [1] 226s 226s ! [Relax Library][TOT= 5][ 0 %] ! [Relax Library][TOT= 5][ 40 %] ! [Relax Library][TOT= 5][ 60 %] ! [Relax Library][TOT= 5][ 80 %] ! [Relax Library][TOT= 5][100 %] 226s 226s Relaxation Summary: [7026]--->[6316] 226s 226s 226s 226s UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 226s 226s MAKE GUIDE TREE 226s [MODE=nj][DONE] 226s 226s PROGRESSIVE_ALIGNMENT [Tree Based] 226s Group 1: AC000104.1-17376_17496 226s Group 2: AC068303.10-12902_12788 226s Group 3: AC097725.2-33800_33915 226s Group 4: AL023594.2-7651_7766 226s Group 5: X15934.1-3_121 226s 226s #Single Thread 226s 226s Group 6: [Group 5 ( 1 seq)] with [Group 1 ( 1 seq)]-->[Len= 122][PID:1037]#Single Thread 226s 226s Group 7: [Group 3 ( 1 seq)] with [Group 2 ( 1 seq)]-->[Len= 120][PID:1037]#Single Thread 226s 226s Group 8: [Group 7 ( 2 seq)] with [Group 6 ( 2 seq)]-->[Len= 126][PID:1037]#Single Thread 226s 226s Group 9: [Group 4 ( 1 seq)] with [Group 8 ( 4 seq)]-->[Len= 129][PID:1037] 226s 226s 226s ! [Final Evaluation][TOT= 129][ 0 %] ! [Final Evaluation][TOT= 129][ 1 %] ! [Final Evaluation][TOT= 129][ 2 %] ! [Final Evaluation][TOT= 129][ 3 %] ! [Final Evaluation][TOT= 129][ 4 %] ! [Final Evaluation][TOT= 129][ 5 %] ! [Final Evaluation][TOT= 129][ 6 %] ! [Final Evaluation][TOT= 129][ 7 %] ! [Final Evaluation][TOT= 129][ 8 %] ! [Final Evaluation][TOT= 129][ 9 %] ! [Final Evaluation][TOT= 129][ 10 %] ! [Final Evaluation][TOT= 129][ 11 %] ! [Final Evaluation][TOT= 129][ 12 %] ! [Final Evaluation][TOT= 129][ 13 %] ! [Final Evaluation][TOT= 129][ 14 %] ! [Final Evaluation][TOT= 129][ 15 %] ! [Final Evaluation][TOT= 129][ 16 %] ! [Final Evaluation][TOT= 129][ 17 %] ! [Final Evaluation][TOT= 129][ 18 %] ! [Final Evaluation][TOT= 129][ 19 %] ! [Final Evaluation][TOT= 129][ 20 %] ! [Final Evaluation][TOT= 129][ 21 %] ! [Final Evaluation][TOT= 129][ 22 %] ! [Final Evaluation][TOT= 129][ 23 %] ! [Final Evaluation][TOT= 129][ 24 %] ! [Final Evaluation][TOT= 129][ 25 %] ! 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[Final Evaluation][TOT= 129][ 52 %] ! [Final Evaluation][TOT= 129][ 53 %] ! [Final Evaluation][TOT= 129][ 54 %] ! [Final Evaluation][TOT= 129][ 55 %] ! [Final Evaluation][TOT= 129][ 56 %] ! [Final Evaluation][TOT= 129][ 57 %] ! [Final Evaluation][TOT= 129][ 58 %] ! [Final Evaluation][TOT= 129][ 59 %] ! [Final Evaluation][TOT= 129][ 60 %] ! [Final Evaluation][TOT= 129][ 61 %] ! [Final Evaluation][TOT= 129][ 62 %] ! [Final Evaluation][TOT= 129][ 63 %] ! [Final Evaluation][TOT= 129][ 64 %] ! [Final Evaluation][TOT= 129][ 65 %] ! [Final Evaluation][TOT= 129][ 66 %] ! [Final Evaluation][TOT= 129][ 67 %] ! [Final Evaluation][TOT= 129][ 68 %] ! [Final Evaluation][TOT= 129][ 69 %] ! [Final Evaluation][TOT= 129][ 70 %] ! [Final Evaluation][TOT= 129][ 71 %] ! [Final Evaluation][TOT= 129][ 72 %] ! [Final Evaluation][TOT= 129][ 73 %] ! [Final Evaluation][TOT= 129][ 74 %] ! [Final Evaluation][TOT= 129][ 75 %] ! [Final Evaluation][TOT= 129][ 76 %] ! [Final Evaluation][TOT= 129][ 77 %] ! [Final Evaluation][TOT= 129][ 78 %] ! [Final Evaluation][TOT= 129][ 79 %] ! [Final Evaluation][TOT= 129][ 80 %] ! [Final Evaluation][TOT= 129][ 81 %] ! [Final Evaluation][TOT= 129][ 82 %] ! [Final Evaluation][TOT= 129][ 83 %] ! [Final Evaluation][TOT= 129][ 84 %] ! [Final Evaluation][TOT= 129][ 85 %] ! [Final Evaluation][TOT= 129][ 86 %] ! [Final Evaluation][TOT= 129][ 87 %] ! [Final Evaluation][TOT= 129][ 88 %] ! [Final Evaluation][TOT= 129][ 89 %] ! [Final Evaluation][TOT= 129][ 90 %] ! [Final Evaluation][TOT= 129][ 91 %] ! [Final Evaluation][TOT= 129][ 92 %] ! [Final Evaluation][TOT= 129][ 93 %] ! [Final Evaluation][TOT= 129][ 94 %] ! [Final Evaluation][TOT= 129][ 95 %] ! [Final Evaluation][TOT= 129][ 96 %] ! [Final Evaluation][TOT= 129][ 97 %] ! [Final Evaluation][TOT= 129][ 98 %] ! [Final Evaluation][TOT= 129][ 99 %] ! [Final Evaluation][TOT= 129][100 %] 226s 226s 226s 226s OUTPUT RESULTS 226s #### File Type= GUIDE_TREE Format= newick Name= sample_rnaseq1.dnd 226s #### File Type= MSA Format= aln Name= sample_rnaseq1.aln 226s #### File Type= MSA Format= html Name= sample_rnaseq1.html 226s 226s # Command Line: t_coffee sample_rnaseq1.fasta [PROGRAM:T-COFFEE] 226s # T-COFFEE Memory Usage: Current= 212.545 Mb, Max= 228.743 Mb 226s # Results Produced with T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 226s # T-COFFEE is available from http://www.tcoffee.org 226s # Register on: https://groups.google.com/group/tcoffee/ 226s #Single Thread 226s CLUSTAL FORMAT for T-COFFEE Version_13.41.0.28bdc39 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=55, Nseq=5, Len=129 226s 226s AC068303.10-12902_12788 AACUCUUGUUUCUCUUCAG-----AUCAUGUAAAUCUUUCGCCUUUUAUU 226s AC097725.2-33800_33915 A-CUCUGGUUUCUCUUCAAU---UGUCGAAUAAAUCUUUCGCCUUUUACU 226s X15934.1-3_121 A-GCCGUGUG-AUGAUGACA---UAGCGAACUAUUCUUUCGCCUUUUACU 226s AC000104.1-17376_17496 A-GCCAUGUG-GUGAGCACA---UAGCGAACUAUUCUUUCGCCUUUUACU 226s AL023594.2-7651_7766 G-UCAAAGCA-CUUUGCAAAAGCUAACGUAUCUGUUUCUUGCCUUUUACC 226s * * * * * * * ******** 226s 226s AC068303.10-12902_12788 AAAGAUUUCCAUGGGGAGGAACA--GUUAUGAGUCUUUAUCCAAUUUCU- 226s AC097725.2-33800_33915 AAAGAUUUCCGUGGAGAGGAACACUCUAAUGAGUCUAA-AAUAAUUUUUA 226s X15934.1-3_121 AAAGAAUACCGUGUCA-GCGUCACAAUUAGCGGCAUAC-GCUAGUUUUUG 226s AC000104.1-17376_17496 AAAGAAUACCGUGUGC-UCUCCACGCUAAGUGGCAUAC-GCCUAUUUUUG 226s AL023594.2-7651_7766 AGAAACAGCCGUUUGU-AAGGUGUGCUAAUUUGACUGU--AUAGUUUUUG 226s * * * ** * * * * * *** * 226s 226s AC068303.10-12902_12788 GAGG-CCUCGU-GUUU--CACCA--GGCU 226s AC097725.2-33800_33915 GUAG-UGCCCU-G--U--CGCAA--GACU 226s X15934.1-3_121 GAAGAGUUCUCAAUUU--UGAGG-GCUCU 226s AC000104.1-17376_17496 GAGG-GUUCCCACUUUACUGUGGGUCCCA 226s AL023594.2-7651_7766 UAA--UCUUUU-U-CU--UGAAA--CAUU 226s * 226s 226s 226s 227s 227s PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 227s -full_log S [0] 227s -genepred_score S [0] nsd 227s -run_name S [0] 227s -mem_mode S [0] mem 227s -extend D [1] 1 227s -extend_mode S [1] matrix 227s -max_n_pair D [0] 10 227s -seq_name_for_quadruplet S [0] all 227s -compact S [0] default 227s -clean S [0] no 227s -do_self FL [0] 0 227s -do_normalise D [0] 1000 227s -template_file S [0] 227s -setenv S [0] 0 227s -export S [0] 0 227s -template_mode S [0] 227s -flip D [0] 0 227s -remove_template_file D [0] 0 227s -profile_template_file S [0] 227s -in S [1] Xblosum62mt 227s -seq S [1] sample_rnaseq1.fasta 227s -aln S [0] 227s -method_limits S [0] 227s -method S [0] 227s -lib S [0] 227s -profile S [0] 227s -profile1 S [0] 227s -profile2 S [0] 227s -pdb S [0] 227s -relax_lib D [0] 1 227s -filter_lib D [0] 0 227s -shrink_lib D [0] 0 227s -out_lib W_F [0] no 227s -out_lib_mode S [0] primary 227s -lib_only D [0] 0 227s -outseqweight W_F [0] no 227s -seq_source S [0] ANY 227s -cosmetic_penalty D [0] 0 227s -gapopen D [1] -25 227s -gapext D [1] -1 227s -fgapopen D [0] 0 227s -fgapext D [0] 0 227s -nomatch D [0] 0 227s -newtree W_F [0] default 227s -tree W_F [0] NO 227s -usetree R_F [0] 227s -tree_mode S [0] nj 227s -distance_matrix_mode S [1] ktup 227s -distance_matrix_sim_mode S [0] idmat_sim1 227s -quicktree FL [0] 0 227s -outfile W_F [0] default 227s -maximise FL [1] 1 227s -output S [0] aln html 227s -len D [0] 0 227s -infile R_F [0] 227s -matrix S [0] default 227s -tg_mode D [0] 1 227s -profile_mode S [0] cw_profile_profile 227s -profile_comparison S [0] profile 227s -dp_mode S [1] gotoh_pair_wise_lgp 227s -ktuple D [0] 1 227s -ndiag D [0] 0 227s -diag_threshold D [0] 0 227s -diag_mode D [0] 0 227s -sim_matrix S [0] vasiliky 227s -transform S [0] 227s -extend_seq FL [0] 0 227s -outorder S [0] input 227s -inorder S [0] aligned 227s -seqnos S [0] off 227s -case S [0] keep 227s -cpu D [0] 0 227s -ulimit D [0] -1 227s -maxnseq D [1] 10000 227s -maxlen D [0] -1 227s -sample_dp D [0] 0 227s -weight S [0] default 227s -seq_weight S [0] no 227s -align FL [1] 1 227s -mocca FL [0] 0 227s -domain FL [0] 0 227s -start D [0] 0 227s -len D [0] 0 227s -scale D [0] 0 227s -mocca_interactive FL [0] 0 227s -method_evaluate_mode S [0] default 227s -color_mode S [0] new 227s -aln_line_length D [0] 0 227s -evaluate_mode S [0] triplet 227s -get_type FL [0] 0 227s -clean_aln D [0] 0 227s -clean_threshold D [1] 1 227s -clean_iteration D [1] 1 227s -clean_evaluate_mode S [0] t_coffee_fast 227s -extend_matrix FL [0] 0 227s -prot_min_sim D [40] 40 227s -prot_max_sim D [90] 90 227s -prot_trim D [20] 20 227s -prot_min_cov D [40] 40 227s -pdb_type S [0] d 227s -pdb_min_sim D [35] 35 227s -pdb_max_sim D [100] 100 227s -pdb_min_cov D [50] 50 227s -pdb_blast_server W_F [0] EBI 227s -blast W_F [0] 227s -blast_server W_F [0] EBI 227s -pdb_db W_F [0] pdb 227s -protein_db W_F [0] uniref50 227s -method_log W_F [0] no 227s -struc_to_use S [0] 227s -cache W_F [0] use 227s -print_cache FL [0] 0 227s -align_pdb_param_file W_F [0] no 227s -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble 227s -external_aligner S [0] NO 227s -msa_mode S [0] tree 227s -et_mode S [0] et 227s -master S [0] no 227s -blast_nseq D [0] 0 227s -lalign_n_top D [0] 10 227s -iterate D [1] 0 227s -trim D [0] 0 227s -split D [0] 0 227s -trimfile S [0] default 227s -split D [0] 0 227s -split_nseq_thres D [0] 0 227s -split_score_thres D [0] 0 227s -check_pdb_status D [0] 0 227s -clean_seq_name D [0] 0 227s -seq_to_keep S [0] 227s -dpa_master_aln S [0] 227s -dpa_maxnseq D [1] 0 227s -dpa_min_score1 D [0] 227s -dpa_min_score2 D [0] 227s -dpa_keep_tmpfile FL [0] 0 227s -dpa_debug D [0] 0 227s -multi_core S [0] templates_jobs_relax_msa_evaluate 227s -n_core D [0] 1 227s -thread D [0] 1 227s -max_n_proc D [0] 0 227s -lib_list S [0] 227s -prune_lib_mode S [0] 5 227s -tip S [0] none 227s -rna_lib S [0] 227s -no_warning D [0] 0 227s -run_local_script D [0] 0 227s -proxy S [0] unset 227s -email S [0] 227s -clean_overaln D [0] 0 227s -overaln_param S [0] 227s -overaln_mode S [0] 227s -overaln_model S [0] 227s -overaln_threshold D [0] 0 227s -overaln_target D [0] 0 227s -overaln_P1 D [0] 0 227s -overaln_P2 D [0] 0 227s -overaln_P3 D [0] 0 227s -overaln_P4 D [0] 0 227s -exon_boundaries S [0] 227s -display D [0] 100 227s 227s INPUT FILES 227s Input File (X) blosum62mt 227s Input File (S) sample_rnaseq1.fasta Format fasta_seq 227s Input File (M) proba_pair 227s 227s Identify Master Sequences [no]: 227s 227s Master Sequences Identified 227s INPUT SEQUENCES: 5 SEQUENCES [RNA] 227s Input File sample_rnaseq1.fasta Seq AC000104.1-17376_17496 Length 121 type RNA Struct Unchecked 227s Input File sample_rnaseq1.fasta Seq AC068303.10-12902_12788 Length 115 type RNA Struct Unchecked 227s Input File sample_rnaseq1.fasta Seq AC097725.2-33800_33915 Length 116 type RNA Struct Unchecked 227s Input File sample_rnaseq1.fasta Seq AL023594.2-7651_7766 Length 116 type RNA Struct Unchecked 227s Input File sample_rnaseq1.fasta Seq X15934.1-3_121 Length 119 type RNA Struct Unchecked 227s 227s blosum62mt [matrix] 227s 227s MANUAL PENALTIES: gapopen=-25 gapext=-1 227s 227s Library Total Size: [0] 227s 227s 227s 227s UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 227s 227s MAKE GUIDE TREE 227s [MODE=nj][DONE] 227s 227s PROGRESSIVE_ALIGNMENT [Tree Based] 227s Group 1: AC000104.1-17376_17496 227s Group 2: AC068303.10-12902_12788 227s Group 3: AC097725.2-33800_33915 227s Group 4: AL023594.2-7651_7766 227s Group 5: X15934.1-3_121 227s 227s 227s Group 6: [Group 5 ( 1 seq)] with [Group 1 ( 1 seq)]-->[Len= 123][PID:1076] 227s Group 7: [Group 3 ( 1 seq)] with [Group 2 ( 1 seq)]-->[Len= 121][PID:1076] 227s Group 8: [Group 7 ( 2 seq)] with [Group 6 ( 2 seq)]-->[Len= 126][PID:1076] 227s Group 9: [Group 4 ( 1 seq)] with [Group 8 ( 4 seq)]-->[Len= 131][PID:1076] 227s 227s 227s 227s OUTPUT RESULTS 227s #### File Type= GUIDE_TREE Format= newick Name= sample_rnaseq1.dnd 227s #### File Type= MSA Format= aln Name= sample_rnaseq1.aln 227s #### File Type= MSA Format= html Name= sample_rnaseq1.html 227s 227s # Command Line: t_coffee sample_rnaseq1.fasta -mode quickaln [PROGRAM:T-COFFEE] 227s # T-COFFEE Memory Usage: Current= 229.538 Mb, Max= 230.609 Mb 227s # Results Produced with T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 227s # T-COFFEE is available from http://www.tcoffee.org 227s # Register on: https://groups.google.com/group/tcoffee/ 227s #Single Thread 227s CLUSTAL FORMAT for T-COFFEE Version_13.41.0.28bdc39 [http://www.tcoffee.org] [MODE: quickaln ], CPU=0.00 sec, SCORE=3094, Nseq=5, Len=131 227s 227s AC068303.10-12902_12788 AACUCUUGUUUCUCUUCAG--AUCAUGUAAAUC--UUUC--GCCUUUUAU 227s AC097725.2-33800_33915 -ACUCUGGUUUCUCUUCAAUUGUCGAAUAAAUC--UUUC--GCCUUUUAC 227s X15934.1-3_121 AGC-CGUGUGA-UGAUGACAUAGCGAACUAUUC--UUUC--GCCUUUUAC 227s AC000104.1-17376_17496 AGC-CAUGUGG-UGAGCACAUAGCGAACUAUUC--UUUC--GCCUUUUAC 227s AL023594.2-7651_7766 -G-UCAAAGCACUUUGCAAA-AGCUAACGUAUCUGUUUCUUGCCUUUUAC 227s * * * * ** **** ******** 227s 227s AC068303.10-12902_12788 UAAAGAUUUCCAUGGG-GAGGAACA--GUUAUGAGUCUUUAUCCAAUUUC 227s AC097725.2-33800_33915 UAAAGAUUUCCGUGGA-GAGGAACACUCUAAUGAGUCUAAAAUAAUUUUU 227s X15934.1-3_121 UAAAGAAUACCGUGU--CAGCGUCACAAUUA-GCGGCAUACGCUAGUUUU 227s AC000104.1-17376_17496 UAAAGAAUACCGUGUG-CU-CUCCACGCUAA-GUGGCAUACGCCUAUUUU 227s AL023594.2-7651_7766 CAGAAACAGCCGUUUGUAAGGUGUGC--UAAUUUGACUGUA--UAGUUUU 227s * * * ** * * * * * *** 227s 227s AC068303.10-12902_12788 UG--AG-G-CCUCGUGUUUCACCAGG---CU 227s AC097725.2-33800_33915 AGU-AGUG-CC-C-UG--UCGCAAGA---CU 227s X15934.1-3_121 UGGAAGAGUUCUCAAUUU--UGAGGG-CUCU 227s AC000104.1-17376_17496 UGG-AGGGUUCCCACUUUACUGUGGGUCCCA 227s AL023594.2-7651_7766 UGUAA----UC---UUUUUCU-UGAAACAUU 227s * * * 227s 227s 227s 227s 227s PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 227s -full_log S [0] 227s -genepred_score S [0] nsd 227s -run_name S [0] 227s -mem_mode S [0] mem 227s -extend D [1] 1 227s -extend_mode S [1] matrix 227s -max_n_pair D [0] 10 227s -seq_name_for_quadruplet S [0] all 227s -compact S [0] default 227s -clean S [0] no 227s -do_self FL [0] 0 227s -do_normalise D [0] 1000 227s -template_file S [0] 227s -setenv S [0] 0 227s -export S [0] 0 227s -template_mode S [0] 227s -flip D [0] 0 227s -remove_template_file D [0] 0 227s -profile_template_file S [0] 227s -in S [1] Xblosum62mt 227s -seq S [1] sample_rnaseq1.fasta 227s -aln S [0] 227s -method_limits S [0] 227s -method S [0] 227s -lib S [0] 227s -profile S [0] 227s -profile1 S [0] 227s -profile2 S [0] 227s -pdb S [0] 227s -relax_lib D [0] 1 227s -filter_lib D [0] 0 227s -shrink_lib D [0] 0 227s -out_lib W_F [0] no 227s -out_lib_mode S [0] primary 227s -lib_only D [0] 0 227s -outseqweight W_F [0] no 227s -seq_source S [0] ANY 227s -cosmetic_penalty D [0] 0 227s -gapopen D [1] -25 227s -gapext D [1] -1 227s -fgapopen D [0] 0 227s -fgapext D [0] 0 227s -nomatch D [0] 0 227s -newtree W_F [0] default 227s -tree W_F [0] NO 227s -usetree R_F [0] 227s -tree_mode S [0] nj 227s -distance_matrix_mode S [1] ktup 227s -distance_matrix_sim_mode S [0] idmat_sim1 227s -quicktree FL [0] 0 227s -outfile W_F [0] default 227s -maximise FL [1] 1 227s -output S [0] aln html 227s -len D [0] 0 227s -infile R_F [0] 227s -matrix S [0] default 227s -tg_mode D [0] 1 227s -profile_mode S [0] cw_profile_profile 227s -profile_comparison S [0] profile 227s -dp_mode S [1] gotoh_pair_wise_lgp 227s -ktuple D [0] 1 227s -ndiag D [1] 10 227s -diag_threshold D [0] 0 227s -diag_mode D [0] 0 227s -sim_matrix S [0] vasiliky 227s -transform S [0] 227s -extend_seq FL [0] 0 227s -outorder S [0] input 227s -inorder S [0] aligned 227s -seqnos S [0] off 227s -case S [0] keep 227s -cpu D [0] 0 227s -ulimit D [0] -1 227s -maxnseq D [1] 10000 227s -maxlen D [0] -1 227s -sample_dp D [0] 0 227s -weight S [0] default 227s -seq_weight S [0] no 227s -align FL [1] 1 227s -mocca FL [0] 0 227s -domain FL [0] 0 227s -start D [0] 0 227s -len D [0] 0 227s -scale D [0] 0 227s -mocca_interactive FL [0] 0 227s -method_evaluate_mode S [0] default 227s -color_mode S [0] new 227s -aln_line_length D [0] 0 227s -evaluate_mode S [0] triplet 227s -get_type FL [0] 0 227s -clean_aln D [0] 0 227s -clean_threshold D [1] 1 227s -clean_iteration D [1] 1 227s -clean_evaluate_mode S [0] t_coffee_fast 227s -extend_matrix FL [0] 0 227s -prot_min_sim D [40] 40 227s -prot_max_sim D [90] 90 227s -prot_trim D [20] 20 227s -prot_min_cov D [40] 40 227s -pdb_type S [0] d 227s -pdb_min_sim D [35] 35 227s -pdb_max_sim D [100] 100 227s -pdb_min_cov D [50] 50 227s -pdb_blast_server W_F [0] EBI 227s -blast W_F [0] 227s -blast_server W_F [0] EBI 227s -pdb_db W_F [0] pdb 227s -protein_db W_F [0] uniref50 227s -method_log W_F [0] no 227s -struc_to_use S [0] 227s -cache W_F [0] use 227s -print_cache FL [0] 0 227s -align_pdb_param_file W_F [0] no 227s -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble 227s -external_aligner S [0] NO 227s -msa_mode S [0] tree 227s -et_mode S [0] et 227s -master S [0] no 227s -blast_nseq D [0] 0 227s -lalign_n_top D [0] 10 227s -iterate D [1] 0 227s -trim D [0] 0 227s -split D [0] 0 227s -trimfile S [0] default 227s -split D [0] 0 227s -split_nseq_thres D [0] 0 227s -split_score_thres D [0] 0 227s -check_pdb_status D [0] 0 227s -clean_seq_name D [0] 0 227s -seq_to_keep S [0] 227s -dpa_master_aln S [0] 227s -dpa_maxnseq D [1] 0 227s -dpa_min_score1 D [0] 227s -dpa_min_score2 D [0] 227s -dpa_keep_tmpfile FL [0] 0 227s -dpa_debug D [0] 0 227s -multi_core S [0] templates_jobs_relax_msa_evaluate 227s -n_core D [0] 1 227s -thread D [0] 1 227s -max_n_proc D [0] 0 227s -lib_list S [0] 227s -prune_lib_mode S [0] 5 227s -tip S [0] none 227s -rna_lib S [0] 227s -no_warning D [0] 0 227s -run_local_script D [0] 0 227s -proxy S [0] unset 227s -email S [0] 227s -clean_overaln D [0] 0 227s -overaln_param S [0] 227s -overaln_mode S [0] 227s -overaln_model S [0] 227s -overaln_threshold D [0] 0 227s -overaln_target D [0] 0 227s -overaln_P1 D [0] 0 227s -overaln_P2 D [0] 0 227s -overaln_P3 D [0] 0 227s -overaln_P4 D [0] 0 227s -exon_boundaries S [0] 227s -display D [0] 100 227s 227s INPUT FILES 227s Input File (X) blosum62mt 227s Input File (S) sample_rnaseq1.fasta Format fasta_seq 227s Input File (M) proba_pair 227s 227s Identify Master Sequences [no]: 227s 227s Master Sequences Identified 227s INPUT SEQUENCES: 5 SEQUENCES [RNA] 227s Input File sample_rnaseq1.fasta Seq AC000104.1-17376_17496 Length 121 type RNA Struct Unchecked 227s Input File sample_rnaseq1.fasta Seq AC068303.10-12902_12788 Length 115 type RNA Struct Unchecked 227s Input File sample_rnaseq1.fasta Seq AC097725.2-33800_33915 Length 116 type RNA Struct Unchecked 227s Input File sample_rnaseq1.fasta Seq AL023594.2-7651_7766 Length 116 type RNA Struct Unchecked 227s Input File sample_rnaseq1.fasta Seq X15934.1-3_121 Length 119 type RNA Struct Unchecked 227s 227s blosum62mt [matrix] 227s 227s MANUAL PENALTIES: gapopen=-25 gapext=-1 227s 227s Library Total Size: [0] 227s 227s 227s 227s UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 227s 227s MAKE GUIDE TREE 227s [MODE=nj][DONE] 227s 227s PROGRESSIVE_ALIGNMENT [Tree Based] 227s Group 1: AC000104.1-17376_17496 227s Group 2: AC068303.10-12902_12788 227s Group 3: AC097725.2-33800_33915 227s Group 4: AL023594.2-7651_7766 227s Group 5: X15934.1-3_121 227s 227s 227s Group 6: [Group 5 ( 1 seq)] with [Group 1 ( 1 seq)]-->[Len= 123][PID:1119] 227s Group 7: [Group 3 ( 1 seq)] with [Group 2 ( 1 seq)]-->[Len= 121][PID:1119] 227s Group 8: [Group 7 ( 2 seq)] with [Group 6 ( 2 seq)]-->[Len= 126][PID:1119] 227s Group 9: [Group 4 ( 1 seq)] with [Group 8 ( 4 seq)]-->[Len= 131][PID:1119] 227s 227s 227s 227s OUTPUT RESULTS 227s #### File Type= GUIDE_TREE Format= newick Name= sample_rnaseq1.dnd 227s #### File Type= MSA Format= aln Name= sample_rnaseq1.aln 227s #### File Type= MSA Format= html Name= sample_rnaseq1.html 227s 227s # Command Line: t_coffee sample_rnaseq1.fasta -mode quickaln -ndiag 10 [PROGRAM:T-COFFEE] 227s # T-COFFEE Memory Usage: Current= 229.539 Mb, Max= 230.611 Mb 227s # Results Produced with T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 227s # T-COFFEE is available from http://www.tcoffee.org 227s # Register on: https://groups.google.com/group/tcoffee/ 227s #Single Thread 227s CLUSTAL FORMAT for T-COFFEE Version_13.41.0.28bdc39 [http://www.tcoffee.org] [MODE: quickaln ], CPU=0.00 sec, SCORE=3094, Nseq=5, Len=131 227s 227s AC068303.10-12902_12788 AACUCUUGUUUCUCUUCAG--AUCAUGUAAAUC--UUUC--GCCUUUUAU 227s AC097725.2-33800_33915 -ACUCUGGUUUCUCUUCAAUUGUCGAAUAAAUC--UUUC--GCCUUUUAC 227s X15934.1-3_121 AGC-CGUGUGA-UGAUGACAUAGCGAACUAUUC--UUUC--GCCUUUUAC 227s AC000104.1-17376_17496 AGC-CAUGUGG-UGAGCACAUAGCGAACUAUUC--UUUC--GCCUUUUAC 227s AL023594.2-7651_7766 -G-UCAAAGCACUUUGCAAA-AGCUAACGUAUCUGUUUCUUGCCUUUUAC 227s * * * * ** **** ******** 227s 227s AC068303.10-12902_12788 UAAAGAUUUCCAUGGG-GAGGAACA--GUUAUGAGUCUUUAUCCAAUUUC 227s AC097725.2-33800_33915 UAAAGAUUUCCGUGGA-GAGGAACACUCUAAUGAGUCUAAAAUAAUUUUU 227s X15934.1-3_121 UAAAGAAUACCGUGU--CAGCGUCACAAUUA-GCGGCAUACGCUAGUUUU 227s AC000104.1-17376_17496 UAAAGAAUACCGUGUG-CU-CUCCACGCUAA-GUGGCAUACGCCUAUUUU 227s AL023594.2-7651_7766 CAGAAACAGCCGUUUGUAAGGUGUGC--UAAUUUGACUGUA--UAGUUUU 227s * * * ** * * * * * *** 227s 227s AC068303.10-12902_12788 UG--AG-G-CCUCGUGUUUCACCAGG---CU 227s AC097725.2-33800_33915 AGU-AGUG-CC-C-UG--UCGCAAGA---CU 227s X15934.1-3_121 UGGAAGAGUUCUCAAUUU--UGAGGG-CUCU 227s AC000104.1-17376_17496 UGG-AGGGUUCCCACUUUACUGUGGGUCCCA 227s AL023594.2-7651_7766 UGUAA----UC---UUUUUCU-UGAAACAUU 227s * * * 227s 227s 227s 227s 227s PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 227s -full_log S [0] 227s -genepred_score S [0] nsd 227s -run_name S [0] 227s -mem_mode S [0] mem 227s -extend D [1] 1 227s -extend_mode S [0] very_fast_triplet 227s -max_n_pair D [0] 10 227s -seq_name_for_quadruplet S [0] all 227s -compact S [0] default 227s -clean S [0] no 227s -do_self FL [0] 0 227s -do_normalise D [0] 1000 227s -template_file S [0] 227s -setenv S [0] 0 227s -export S [0] 0 227s -template_mode S [0] 227s -flip D [0] 0 227s -remove_template_file D [0] 0 227s -profile_template_file S [0] 227s -in S [0] 227s -seq S [1] proteases_small.fasta 227s -aln S [1] g0.aln g5.aln g10.aln g15.aln 227s -method_limits S [0] 227s -method S [0] 227s -lib S [0] 227s -profile S [0] 227s -profile1 S [0] 227s -profile2 S [0] 227s -pdb S [0] 227s -relax_lib D [0] 1 227s -filter_lib D [0] 0 227s -shrink_lib D [0] 0 227s -out_lib W_F [0] no 227s -out_lib_mode S [0] primary 227s -lib_only D [0] 0 227s -outseqweight W_F [0] no 227s -seq_source S [0] ANY 227s -cosmetic_penalty D [0] 0 227s -gapopen D [0] 0 227s -gapext D [0] 0 227s -fgapopen D [0] 0 227s -fgapext D [0] 0 227s -nomatch D [0] 0 227s -newtree W_F [0] default 227s -tree W_F [0] NO 227s -usetree R_F [0] 227s -tree_mode S [0] nj 227s -distance_matrix_mode S [0] ktup 227s -distance_matrix_sim_mode S [0] idmat_sim1 227s -quicktree FL [0] 0 227s -outfile W_F [0] default 227s -maximise FL [1] 1 227s -output S [1] clustalw html 227s -len D [0] 0 227s -infile R_F [0] 227s -matrix S [0] default 227s -tg_mode D [0] 1 227s -profile_mode S [0] cw_profile_profile 227s -profile_comparison S [0] profile 227s -dp_mode S [0] linked_pair_wise 227s -ktuple D [0] 1 227s -ndiag D [0] 0 227s -diag_threshold D [0] 0 227s -diag_mode D [0] 0 227s -sim_matrix S [0] vasiliky 227s -transform S [0] 227s -extend_seq FL [0] 0 227s -outorder S [0] input 227s -inorder S [0] aligned 227s -seqnos S [0] off 227s -case S [0] keep 227s -cpu D [0] 0 227s -ulimit D [0] -1 227s -maxnseq D [0] -1 227s -maxlen D [0] -1 227s -sample_dp D [0] 0 227s -weight S [0] default 227s -seq_weight S [0] no 227s -align FL [1] 1 227s -mocca FL [0] 0 227s -domain FL [0] 0 227s -start D [0] 0 227s -len D [0] 0 227s -scale D [0] 0 227s -mocca_interactive FL [0] 0 227s -method_evaluate_mode S [0] default 227s -color_mode S [0] new 227s -aln_line_length D [0] 0 227s -evaluate_mode S [0] triplet 227s -get_type FL [0] 0 227s -clean_aln D [0] 0 227s -clean_threshold D [1] 1 227s -clean_iteration D [1] 1 227s -clean_evaluate_mode S [0] t_coffee_fast 227s -extend_matrix FL [0] 0 227s -prot_min_sim D [40] 40 227s -prot_max_sim D [90] 90 227s -prot_trim D [20] 20 227s -prot_min_cov D [40] 40 227s -pdb_type S [0] d 227s -pdb_min_sim D [35] 35 227s -pdb_max_sim D [100] 100 227s -pdb_min_cov D [50] 50 227s -pdb_blast_server W_F [0] EBI 227s -blast W_F [0] 227s -blast_server W_F [0] EBI 227s -pdb_db W_F [0] pdb 227s -protein_db W_F [0] uniref50 227s -method_log W_F [0] no 227s -struc_to_use S [0] 227s -cache W_F [0] use 227s -print_cache FL [0] 0 227s -align_pdb_param_file W_F [0] no 227s -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble 227s -external_aligner S [0] NO 227s -msa_mode S [0] tree 227s -et_mode S [0] et 227s -master S [0] no 227s -blast_nseq D [0] 0 227s -lalign_n_top D [0] 10 227s -iterate D [0] 0 227s -trim D [0] 0 227s -split D [0] 0 227s -trimfile S [0] default 227s -split D [0] 0 227s -split_nseq_thres D [0] 0 227s -split_score_thres D [0] 0 227s -check_pdb_status D [0] 0 227s -clean_seq_name D [0] 0 227s -seq_to_keep S [0] 227s -dpa_master_aln S [0] 227s -dpa_maxnseq D [0] 0 227s -dpa_min_score1 D [0] 227s -dpa_min_score2 D [0] 227s -dpa_keep_tmpfile FL [0] 0 227s -dpa_debug D [0] 0 227s -multi_core S [0] templates_jobs_relax_msa_evaluate 227s -n_core D [0] 1 227s -thread D [0] 1 227s -max_n_proc D [0] 0 227s -lib_list S [0] 227s -prune_lib_mode S [0] 5 227s -tip S [0] none 227s -rna_lib S [0] 227s -no_warning D [0] 0 227s -run_local_script D [0] 0 227s -proxy S [0] unset 227s -email S [0] 227s -clean_overaln D [0] 0 227s -overaln_param S [0] 227s -overaln_mode S [0] 227s -overaln_model S [0] 227s -overaln_threshold D [0] 0 227s -overaln_target D [0] 0 227s -overaln_P1 D [0] 0 227s -overaln_P2 D [0] 0 227s -overaln_P3 D [0] 0 227s -overaln_P4 D [0] 0 227s -exon_boundaries S [0] 227s -display D [0] 100 227s 227s INPUT FILES 227s Input File (S) proteases_small.fasta Format fasta_seq 227s Input File (A) g0.aln Format clustal_aln 227s Input File (A) g5.aln Format clustal_aln 227s Input File (A) g10.aln Format clustal_aln 227s Input File (A) g15.aln Format clustal_aln 228s 228s Identify Master Sequences [no]: 228s 228s Master Sequences Identified 228s INPUT SEQUENCES: 19 SEQUENCES [PROTEIN] 228s Input File proteases_small.fasta Seq sp|O35205|GRAK_MOUSE Length 263 type PROTEIN Struct Unchecked 228s Input File g0.aln Seq sp|P00757|KLKB4_MOUSE Length 256 type PROTEIN Struct Unchecked 228s Input File g0.aln Seq sp|P00773|ELA1_RAT Length 266 type PROTEIN Struct Unchecked 228s Input File g0.aln Seq sp|P03953|CFAD_MOUSE Length 259 type PROTEIN Struct Unchecked 228s Input File g0.aln Seq sp|P07338|CTRB1_RAT Length 263 type PROTEIN Struct Unchecked 228s Input File g0.aln Seq sp|P08246|ELNE_HUMAN Length 267 type PROTEIN Struct Unchecked 228s Input File proteases_small.fasta Seq sp|P08884|GRAE_MOUSE Length 248 type PROTEIN Struct Unchecked 228s Input File g0.aln Seq sp|P20160|CAP7_HUMAN Length 251 type PROTEIN Struct Unchecked 228s Input File proteases_small.fasta Seq sp|P21844|MCPT5_MOUSE Length 247 type PROTEIN Struct Unchecked 228s Input File g0.aln Seq sp|P29786|TRY3_AEDAE Length 254 type PROTEIN Struct Unchecked 228s Input File g0.aln Seq sp|P35037|TRY3_ANOGA Length 275 type PROTEIN Struct Unchecked 228s Input File g0.aln Seq sp|P80015|CAP7_PIG Length 219 type PROTEIN Struct Unchecked 228s Input File g0.aln Seq sp|Q00871|CTRB1_PENVA Length 271 type PROTEIN Struct Unchecked 228s Input File g0.aln Seq sp|Q03238|GRAM_RAT Length 258 type PROTEIN Struct Unchecked 228s Input File proteases_small.fasta Seq sp|Q06606|GRZ2_RAT Length 248 type PROTEIN Struct Unchecked 228s Input File g0.aln Seq sp|Q6H321|KLK2_HORSE Length 261 type PROTEIN Struct Unchecked 228s Input File proteases_small.fasta Seq sp|Q7YRZ7|GRAA_BOVIN Length 258 type PROTEIN Struct Unchecked 228s Input File g0.aln Seq sp|Q91VE3|KLK7_MOUSE Length 249 type PROTEIN Struct Unchecked 228s Input File proteases_small.fasta Seq sp|Q9Y5K2|KLK4_HUMAN Length 254 type PROTEIN Struct Unchecked 228s 228s Multi Core Mode: 1 processors: 228s 228s --- Process Method/Library/Aln Sproteases_small.fasta 228s xxx Retrieved Sproteases_small.fasta 228s --- Process Method/Library/Aln Ag0.aln 228s xxx Retrieved Ag0.aln 228s --- Process Method/Library/Aln Ag5.aln 228s xxx Retrieved Ag5.aln 228s --- Process Method/Library/Aln Ag10.aln 228s xxx Retrieved Ag10.aln 228s --- Process Method/Library/Aln Ag15.aln 228s xxx Retrieved Ag15.aln 228s 228s All Methods Retrieved 228s 228s MANUAL PENALTIES: gapopen=0 gapext=0 228s 228s Library Total Size: [12058] 228s 228s Library Relaxation: Multi_proc [1] 228s 228s ! [Relax Library][TOT= 19][ 0 %] ! [Relax Library][TOT= 19][ 10 %] ! [Relax Library][TOT= 19][ 15 %] ! [Relax Library][TOT= 19][ 21 %] ! [Relax Library][TOT= 19][ 26 %] ! [Relax Library][TOT= 19][ 31 %] ! [Relax Library][TOT= 19][ 36 %] ! [Relax Library][TOT= 19][ 42 %] ! [Relax Library][TOT= 19][ 47 %] ! [Relax Library][TOT= 19][ 52 %] ! [Relax Library][TOT= 19][ 57 %] ! [Relax Library][TOT= 19][ 63 %] ! [Relax Library][TOT= 19][ 68 %] ! [Relax Library][TOT= 19][ 73 %] ! [Relax Library][TOT= 19][ 78 %] ! [Relax Library][TOT= 19][ 84 %] ! [Relax Library][TOT= 19][ 89 %] ! [Relax Library][TOT= 19][ 94 %] ! [Relax Library][TOT= 19][100 %] 228s 228s Relaxation Summary: [12058]--->[12058] 228s 228s 228s 228s UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 228s 228s MAKE GUIDE TREE 228s [MODE=nj][DONE] 228s 228s PROGRESSIVE_ALIGNMENT [Tree Based] 228s Group 1: sp|O35205|GRAK_MOUSE 228s Group 2: sp|P00757|KLKB4_MOUSE 228s Group 3: sp|P00773|ELA1_RAT 228s Group 4: sp|P03953|CFAD_MOUSE 228s Group 5: sp|P07338|CTRB1_RAT 228s Group 6: sp|P08246|ELNE_HUMAN 228s Group 7: sp|P08884|GRAE_MOUSE 228s Group 8: sp|P20160|CAP7_HUMAN 228s Group 9: sp|P21844|MCPT5_MOUSE 228s Group 10: sp|P29786|TRY3_AEDAE 228s Group 11: sp|P35037|TRY3_ANOGA 228s Group 12: sp|P80015|CAP7_PIG 228s Group 13: sp|Q00871|CTRB1_PENVA 228s Group 14: sp|Q03238|GRAM_RAT 228s Group 15: sp|Q06606|GRZ2_RAT 228s Group 16: sp|Q6H321|KLK2_HORSE 228s Group 17: sp|Q7YRZ7|GRAA_BOVIN 228s Group 18: sp|Q91VE3|KLK7_MOUSE 228s Group 19: sp|Q9Y5K2|KLK4_HUMAN 228s 228s #Single Thread 228s 228s Group 20: [Group 16 ( 1 seq)] with [Group 2 ( 1 seq)]-->[Len= 262][PID:1162]#Single Thread 228s 228s Group 21: [Group 19 ( 1 seq)] with [Group 18 ( 1 seq)]-->[Len= 258][PID:1162]#Single Thread 228s 228s Group 22: [Group 21 ( 2 seq)] with [Group 20 ( 2 seq)]-->[Len= 272][PID:1162]#Single Thread 228s 228s Group 23: [Group 4 ( 1 seq)] with [Group 1 ( 1 seq)]-->[Len= 268][PID:1162]#Single Thread 228s 228s Group 24: [Group 9 ( 1 seq)] with [Group 3 ( 1 seq)]-->[Len= 270][PID:1162]#Single Thread 228s 228s Group 25: [Group 24 ( 2 seq)] with [Group 23 ( 2 seq)]-->[Len= 285][PID:1162]#Single Thread 228s 228s Group 26: [Group 15 ( 1 seq)] with [Group 7 ( 1 seq)]-->[Len= 251][PID:1162]#Single Thread 228s 228s Group 27: [Group 14 ( 1 seq)] with [Group 26 ( 2 seq)]-->[Len= 268][PID:1162]#Single Thread 228s 228s Group 28: [Group 27 ( 3 seq)] with [Group 25 ( 4 seq)]-->[Len= 291][PID:1162]#Single Thread 228s 228s Group 29: [Group 17 ( 1 seq)] with [Group 28 ( 7 seq)]-->[Len= 295][PID:1162]#Single Thread 228s 228s Group 30: [Group 12 ( 1 seq)] with [Group 8 ( 1 seq)]-->[Len= 252][PID:1162]#Single Thread 228s 228s Group 31: [Group 30 ( 2 seq)] with [Group 6 ( 1 seq)]-->[Len= 272][PID:1162]#Single Thread 228s 228s Group 32: [Group 13 ( 1 seq)] with [Group 31 ( 3 seq)]-->[Len= 300][PID:1162]#Single Thread 228s 228s Group 33: [Group 32 ( 4 seq)] with [Group 29 ( 8 seq)]-->[Len= 329][PID:1162]#Single Thread 228s 228s Group 34: [Group 33 ( 12 seq)] with [Group 22 ( 4 seq)]-->[Len= 343][PID:1162]#Single Thread 228s 228s Group 35: [Group 11 ( 1 seq)] with [Group 10 ( 1 seq)]-->[Len= 275][PID:1162]#Single Thread 228s 228s Group 36: [Group 35 ( 2 seq)] with [Group 5 ( 1 seq)]-->[Len= 286][PID:1162]#Single Thread 228s 228s Group 37: [Group 36 ( 3 seq)] with [Group 34 ( 16 seq)]-->[Len= 351][PID:1162] 228s 228s 228s ! [Final Evaluation][TOT= 351][ 0 %] ! [Final Evaluation][TOT= 351][ 1 %] ! [Final Evaluation][TOT= 351][ 2 %] ! [Final Evaluation][TOT= 351][ 3 %] ! [Final Evaluation][TOT= 351][ 4 %] ! [Final Evaluation][TOT= 351][ 5 %] ! [Final Evaluation][TOT= 351][ 6 %] ! [Final Evaluation][TOT= 351][ 7 %] ! [Final Evaluation][TOT= 351][ 8 %] ! [Final Evaluation][TOT= 351][ 9 %] ! [Final Evaluation][TOT= 351][ 10 %] ! [Final Evaluation][TOT= 351][ 11 %] ! [Final Evaluation][TOT= 351][ 12 %] ! [Final Evaluation][TOT= 351][ 13 %] ! [Final Evaluation][TOT= 351][ 14 %] ! [Final Evaluation][TOT= 351][ 15 %] ! [Final Evaluation][TOT= 351][ 16 %] ! [Final Evaluation][TOT= 351][ 17 %] ! [Final Evaluation][TOT= 351][ 18 %] ! [Final Evaluation][TOT= 351][ 19 %] ! [Final Evaluation][TOT= 351][ 20 %] ! [Final Evaluation][TOT= 351][ 21 %] ! [Final Evaluation][TOT= 351][ 22 %] ! [Final Evaluation][TOT= 351][ 23 %] ! [Final Evaluation][TOT= 351][ 24 %] ! [Final Evaluation][TOT= 351][ 25 %] ! 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[Final Evaluation][TOT= 351][100 %] 228s 228s #Single Thread 228s CLUSTAL FORMAT for T-COFFEE Version_13.41.0.28bdc39 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=74, Nseq=19, Len=351 228s 228s sp|Q06606|GRZ2_RAT M----------F-LFLFFLVAI-----LPV--N-------TE-GG----- 228s sp|P08884|GRAE_MOUSE M----------P-PVLILLTLL-----LPL--G-------AG-AE----- 228s sp|P21844|MCPT5_MOUSE MH---------L-LTLHLLLLL-----LGS--S-------TK-A------ 228s sp|O35205|GRAK_MOUSE MR---------F-SSWALVSLV-----AGVY-M-------SS-EC----F 228s sp|Q9Y5K2|KLK4_HUMAN MATAGNPW-G-W-FLGY-LILG-----VAG--S-------LV-S------ 228s sp|Q7YRZ7|GRAA_BOVIN MN-IPF---PFSFPPAICLLLI-----PGV--F-------PV-S------ 228s sp|P29786|TRY3_AEDAE M---N--Q--FL-FVSFCALLD-----SA-------K-V-SA-AT--L-S 228s sp|P35037|TRY3_ANOGA MI-SN--KIAIL-LAVLVVAVACAQARVA----QQHR-SVQALPR--FLP 228s sp|P03953|CFAD_MOUSE MH-S-----S-V-YFVALVILG-----AAVC-A--------A-Q-----P 228s sp|P20160|CAP7_HUMAN ----MTRL-T-V-LALLAGLLA-----SS-R---------AG-SS----P 228s sp|P80015|CAP7_PIG -------------------------------------------------- 228s sp|P08246|ELNE_HUMAN MT-LGRRL-A-C-L-FLACVLP-----AL-L---------LG-GT----A 228s sp|Q00871|CTRB1_PENVA ----MIGK-L-S-LLLVCVAVA-----SGNPAAG--KPWHWKSPKPLVDP 228s sp|P07338|CTRB1_RAT M------A--FL-WLVSCFALV-----GA-------T-FGCGVPT--IQP 228s sp|P00773|ELA1_RAT ML---------R-FLVFASLVL-----YGH--S-------TQ-DF----P 228s sp|Q91VE3|KLK7_MOUSE M-----GV---W-LLSL-ITVL-----LSL--A-------LETA------ 228s sp|Q6H321|KLK2_HORSE M----------W-FLVLCLDLS-----LGE--T-------GA-L-----P 228s sp|P00757|KLKB4_MOUSE M----------W-FLILFLALS-----LGG--I-------DA-A-----P 228s sp|Q03238|GRAM_RAT L-------------LLL-LA-L-----KTL--W-------AV-GN----R 228s 228s 228s sp|Q06606|GRZ2_RAT --------EIIWGTESKPHSRPYM-AFIKFYDSNSEPHHCGGFLVAKDIV 228s sp|P08884|GRAE_MOUSE --------EIIGGHVVKPHSRPYM-AFVKSVDIEGNRRYCGGFLVQDDFV 228s sp|P21844|MCPT5_MOUSE -------GEIIGGTECIPHSRPYM-AYLEIVTSENYLSACSGFLIRRNFV 228s sp|O35205|GRAK_MOUSE ---H---TEIIGGREVQPHSRPFM-ASIQ-YRSK---HICGGVLIHPQWV 228s sp|Q9Y5K2|KLK4_HUMAN G-SC---SQIINGEDCSPHSQPWQAALVM--ENE---LFCSGVLVHPQWV 228s sp|Q7YRZ7|GRAA_BOVIN ---C---EGIIGGNEVAPHTRRYM-ALIK-G-L----KLCAGALIKENWV 228s sp|P29786|TRY3_AEDAE S------GRIVGGFQIDIAEVPHQ-VSLQ-RSGR---HFCGGSIISPRWV 228s sp|P35037|TRY3_ANOGA RPKYDVGHRIVGGFEIDVSETPYQ-VSLQ-YFNS---HRCGGSVLNSKWI 228s sp|P03953|CFAD_MOUSE ---R---GRILGGQEAAAHARPYM-ASVQ-VNGT---HVCGGTLLDEQWV 228s sp|P20160|CAP7_HUMAN L-----L-DIVGGRKARPRQFPFL-ASIQ-NQGR---HFCGGALIHARFV 228s sp|P80015|CAP7_PIG ---------IVGGRRAQPQEFPFL-ASIQ-KQGR---PFCAGALVHPRFV 228s sp|P08246|ELNE_HUMAN L-----ASEIVGGRRARPHAWPFM-VSLQ-LRGG---HFCGATLIAPNFV 228s sp|Q00871|CTRB1_PENVA RIHVNATPRIVGGVEATPHSWPHQ-AALF-IDDM---YFCGGSLISSEWV 228s sp|P07338|CTRB1_RAT VL--TGLSRIVNGEDAIPGSWPWQ-VSL--QDKTG-FHFCGGSLISEDWV 228s sp|P00773|ELA1_RAT E--TN--ARVVGGAEARRNSWPSQ-ISLQYLSGGSWYHTCGGTLIRRNWV 228s sp|Q91VE3|KLK7_MOUSE G-QG---ERIIDGYKCKEGSHPWQVALLK--GNQ---LHCGGVLVDKYWV 228s sp|Q6H321|KLK2_HORSE P-IQ---SRIIGGWECEKHSKPWQVAVYH--QGH---FQCGGVLVHPQWV 228s sp|P00757|KLKB4_MOUSE P-VQ---SQV----DCE-NSQPWHVAVYR--FNK---YQCGGVLLDRNWV 228s sp|Q03238|GRAM_RAT ---FE--AQIIGGREAVPHSRPYM-VSLQ-NTK-S--HMCGGVLVHQKWV 228s : *.. :: : 228s 228s sp|Q06606|GRZ2_RAT MTAAHCN----GR---NIKVTLGAHNIK-KQE-NTQVISVVKAKPHENYD 228s sp|P08884|GRAE_MOUSE LTAAHCR----NR---TMTVTLGAHNIKAKEE-TQQIIPVAKAIPHPDYN 228s sp|P21844|MCPT5_MOUSE LTAAHC--A-G-R---SITVLLGAHNKTSKED-TWQKLEVEKQFLHPKYD 228s sp|O35205|GRAK_MOUSE LTAAHCYSW-FPR-GHSPTVVLGAHSLSKNEP-MKQTFEIKKFIPFSRLQ 228s sp|Q9Y5K2|KLK4_HUMAN LSAAHCF---Q-N---SYTIGLGLHSLEADQEPGSQMVEASLSVRHPEYN 228s sp|Q7YRZ7|GRAA_BOVIN LTAAHCD---L-K-G-NPQVILGAHSTSHKEK-LDQVFSIKKAIPYPCFD 228s sp|P29786|TRY3_AEDAE LTRAHCTTN-T-DPA-AYTIRAGSTDRTNGGI-IV---KVKSVIPHPQYN 228s sp|P35037|TRY3_ANOGA LTAAHCTVN-L-QPS-SLAVRLGSSRHASGGT-VV---RVARVLEHPNYD 228s sp|P03953|CFAD_MOUSE LSAAHCMDG-VTD-DDSVQVLLGAHSLSAPEP-YKRWYDVQSVVPHPGSR 228s sp|P20160|CAP7_HUMAN MTAASCFQS-Q-NPG-VSTVVLGAYDLRRRER-QSRQTFSISSMSENGYD 228s sp|P80015|CAP7_PIG LTAASCFRG-K-NSG-SASVVLGAYDLRQQE--QSRQTFSIRSISQNGYD 228s sp|P08246|ELNE_HUMAN MSAAHCVAN-V-NVR-AVRVVLGAHNLSRRE--PTRQVFAVQRIFENGYD 228s sp|Q00871|CTRB1_PENVA LTAAHCMDG-A-GF---VEVVLGAHNIRQNEA-SQVSITSTDFFTHENWN 228s sp|P07338|CTRB1_RAT VTAAHC--G-V-KT--SDVVVAGEFDQGSDEE-NIQVLKIAQVFKNPKFN 228s sp|P00773|ELA1_RAT MTAAHCV-S-SQM---TFRVVVGDHNLSQNDG-TEQYVSVQKIMVHPTWN 228s sp|Q91VE3|KLK7_MOUSE LTAAHCK---M-G---QYQVQLGSDKI-GDQ--SAQKIKATKSFRHPGYS 228s sp|Q6H321|KLK2_HORSE LTAAHCM---S-D---DYQIWLGRHNLSEDED-TAQFHQVSDSFLDPQFD 228s sp|P00757|KLKB4_MOUSE LTAAHCY---N-D---KYQVWLGKNNFLEDEP-SDQHRLVSKAIPHPDFN 228s sp|Q03238|GRAM_RAT LTAAHCL-SEPLQ---QLKLVFGLHSLHDPQD-PGLTFYIKQAIKHPGYN 228s :: * * : * 228s 228s sp|Q06606|GRZ2_RAT RD-SH----------F--NDIMLLKLERKAQLNGVVKTIALPR-SQDWVK 228s sp|P08884|GRAE_MOUSE AT-AF----------F--SDIMLLKLESKAKRTKAVRPLKLPR-PNARVK 228s sp|P21844|MCPT5_MOUSE EN-LV----------V--HDIMLLKLKEKAKLTLGVGTLPLSA-NFNFIP 228s sp|O35205|GRAK_MOUSE SG-SA----------S--HDIMLIKLRTAAELNKNVQLLHLG--SKNYLR 228s sp|Q9Y5K2|KLK4_HUMAN R---------PLL---A-NDLMLIKLDESVSESDTIRSISIAS-QCPTA- 228s sp|Q7YRZ7|GRAA_BOVIN PQ-TF----------E--GDLQLLQLEGKATMTKAVGILQLPR-TEDDVK 228s sp|P29786|TRY3_AEDAE GD-TY----------N--YDFSLLELDESIGFSRSIEAIALPD-ASETVA 228s sp|P35037|TRY3_ANOGA DS-TI----------D--YDFSLMELESELTFSDVVQPVSLPD-QDEAVE 228s sp|P03953|CFAD_MOUSE PD-SL----------E--DDLILFKLSQNASLGPHVRPLPLQY-EDKEVE 228s sp|P20160|CAP7_HUMAN PQQNL-------------NDLMLLQLDREANLTSSVTILPLPL-QNATVE 228s sp|P80015|CAP7_PIG PRQNL-------------NDVLLLQLDREARLTPSVALVPLPP-QNATVE 228s sp|P08246|ELNE_HUMAN PV-NL----------L--NDIVILQLNGSATINANVQVAQLPA-QGRRLG 228s sp|Q00871|CTRB1_PENVA SW-LL----------T--NDIALIRLPSPVSLNSNIKTVKLP--S-SDVS 228s sp|P07338|CTRB1_RAT MF-TV----------R--NDITLLKLATPAQFSETVSAVCLPN-VDDDFP 228s sp|P00773|ELA1_RAT SN-NV----------AAGYDIALLRLAQSVTLNNYVQLAVLPQ-EGTILA 228s sp|Q91VE3|KLK7_MOUSE T---------KTH---V-NDIMLVRLDEPVKMSSKVEAVQLPE-HCEPP- 228s sp|Q6H321|KLK2_HORSE LS-LLKKKYLRPYDDIS-HDLMLLRLAQPARITDAVKILDLPT-QEPKL- 228s sp|P00757|KLKB4_MOUSE MS-LLNEHTPQPEDDYS-NDLMLLRLSKPADITDVVKPITLPT-EEPKL- 228s sp|Q03238|GRAM_RAT LK--Y----------E--NDLALLKLDGRVKPSKNVKPLALPRKPRDKPA 228s *. :..* : : 228s 228s sp|Q06606|GRZ2_RAT PGQVCTVAGWG--RL-ANCTSSNTLQEVNLEVQKGQKCQ-DM-----SED 228s sp|P08884|GRAE_MOUSE PGDVCSVAGWGSRSI-NDTKASARLREAQLVIQEDEECK-KR-----FRH 228s sp|P21844|MCPT5_MOUSE PGRMCRAVGWG-RTN-VNEPASDTLQEVKMRLQEPQACKHF-TSF-RH-N 228s sp|O35205|GRAK_MOUSE DGTKCQVTGWGTTKP-DLLTASDTLREVTVTIISRKRCN-S-QSYYNHKP 228s sp|Q9Y5K2|KLK4_HUMAN -GNSCLVSGWGLLAN--G-RMPTVLQCVNVSVVSEEVCS-K--L---YDP 228s sp|Q7YRZ7|GRAA_BOVIN PHTKCHVAGWGSTKK-DACQMSNALREANVTVIDRKICN-DAQH-YNFNP 228s sp|P29786|TRY3_AEDAE DGAMCTVSGWGDTKN-VF-EMNTLLRAVNVPSYNQAECA-A--A-LVNVV 228s sp|P35037|TRY3_ANOGA DGTMTIVSGWGNTQS-AA-ESNAILRAANVPTVNQKECT-I--A-YSSSG 228s sp|P03953|CFAD_MOUSE PGTLCDVAGWGVVTH-AG-RRPDVLHQLRVSIMNRTTCN-L--RTYH-DG 228s sp|P20160|CAP7_HUMAN AGTRCQVAGWGSQRS-GG-RLSRFPRFVNVTVTPEDQCR-P--N---N-V 228s sp|P80015|CAP7_PIG AGTNCQVAGWGTQRL-RR-LFSRFPRVLNVTVTS-NPCL-P--R---D-M 228s sp|P08246|ELNE_HUMAN NGVQCLAMGWGLLGR-NR-GIASVLQELNVTVVT-SLCR-R--S---N-V 228s sp|Q00871|CTRB1_PENVA VGTTVTPTGWGRPSD-SASGISDVLRQVNVPVMTNADCD-S--V--YG-- 228s sp|P07338|CTRB1_RAT PGTVCATTGWGKTKY-NALKTPEKLQQAALPIVSEADCK-K--S--WGSK 228s sp|P00773|ELA1_RAT NNNPCYITGWGRTRT-NG-QLSQTLQQAYLPSVDYSICS---SSSYWGST 228s sp|Q91VE3|KLK7_MOUSE -GTSCTVSGWGTTTS-PDVTFPSDLMCSDVKLISSRECK-K--V---YKD 228s sp|Q6H321|KLK2_HORSE -GSTCYTSGWGLIST-FTNRGSGTLQCVELRLQSNEKCA-R--A---YPE 228s sp|P00757|KLKB4_MOUSE -GSTCLASGWG-STTPIKFKYPDDLQCVNLKLLPNEDCD-K--A---HEM 228s sp|Q03238|GRAM_RAT EGSRCSTAGWGITHQ-RG-QLAKSLQELDLRLLDTRMCN-NSRF---WNG 228s *** : * 228s 228s sp|Q06606|GRZ2_RAT YNDSI-QLCVGNPSEGK-A-TGKGDSGGPFV---CD-GVAQGIVSYR--L 228s sp|P08884|GRAE_MOUSE YTETT-EICAGDLKKIK-T-PFKGDSGGPLV---CD-NKAYGLLAYA--K 228s sp|P21844|MCPT5_MOUSE -S----QLCVGNPKKMQ-N-VYKGDSGGPLL---CA-GIAQGIASYV--H 228s sp|O35205|GRAK_MOUSE VITKD-MICAGD-ARGQKD-SCKGDSGGPLI---CK-GIFHALVSQG--Y 228s sp|Q9Y5K2|KLK4_HUMAN LYHPS-MFCAGGGQDQK-D-SCNGDSGGPLI---CN-GYLQGLVSFG--K 228s sp|Q7YRZ7|GRAA_BOVIN VIDLS-MICAGG-RKGEDD-SCEGDSGSPLI---CD-NVFRGVTSFG--- 228s sp|P29786|TRY3_AEDAE PVTEQ-MICAGYAAGGK-D-SCQGDSGGPLVS---G-DKLVGVVSWG--K 228s sp|P35037|TRY3_ANOGA GITDR-MLCAGYKRGGK-D-ACQGDSGGPLVV---D-GKLVGVVSWG--F 228s sp|P03953|CFAD_MOUSE VVTIN-MMCA-E-SNRR-D-TCRGDS 228s 228s OUTPUT RESULTS 228s #### File Type= GUIDE_TREE Format= newick Name= proteases_small.dnd 229s #### File Type= MSA Format= clustalw Name= proteases_small.clustalw 229s #### File Type= MSA Format= html Name= proteases_small.html 229s 229s # Command Line: t_coffee proteases_small.fasta -aln g0.aln g5.aln g10.aln g15.aln -output clustalw html [PROGRAM:T-COFFEE] 229s # T-COFFEE Memory Usage: Current= 213.687 Mb, Max= 229.329 Mb 229s # Results Produced with T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 229s # T-COFFEE is available from http://www.tcoffee.org 229s # Register on: https://groups.google.com/group/tcoffee/ 229s GSPLV---CG-DAVEGVVTWG--S 229s sp|P20160|CAP7_HUMAN -CT-G-VL--TR-RGG----ICNGDGGTPLV---CE-GLAHGVASFSL-G 229s sp|P80015|CAP7_PIG -CI-G-VF--SR-RGR----ISQGDRGTPLV---CN-GLAQGVASF-LRR 229s sp|P08246|ELNE_HUMAN -CT-L-VR--GR-QAG----VCFGDSGSPLV---CN-GLIHGIASF-VRG 229s sp|Q00871|CTRB1_PENVA -IVGDGVVCIDG-TGGK-S-TCNGDSGGPLN---LN-GMTYGITSFG--S 229s sp|P07338|CTRB1_RAT -IT-D-VMTCA-GASGV-S-SCMGDSGGPLVCQKDGVWTLAGIVSWG--S 229s sp|P00773|ELA1_RAT -V-KT-TMVCAG-GDGV-RSGCQGDSGGPLHCLVNGQYSVHGVTSFV--S 229s sp|Q91VE3|KLK7_MOUSE LLGKT-MLCAGIPDSKT-N-TCNGDSGGPLV---CN-DTLQGLVSWG--T 229s sp|Q6H321|KLK2_HORSE KMTEF-VLCATHRDDSG-S-ICLGDSGGALI---CD-GVFQGITSWG--Y 229s sp|P00757|KLKB4_MOUSE KVTDA-MLCAGEMDGGS-Y-TCEHDSGGPLI---CD-GILQGITSWG--P 229s sp|Q03238|GRAM_RAT VLTDS-MLCLKAGAKGQ-A-PCKGDSGGPLV---CGKGKVDGILSFS--S 229s * * .: .: : 229s 229s sp|Q06606|GRZ2_RAT -C-TGTL---PRVFTRISS-FIPWIQKT-MKVLQ-----------QS--- 229s sp|P08884|GRAE_MOUSE -N-RTIS---SGVFTKIVH-FLPWISRN-MKL--------------L--- 229s sp|P21844|MCPT5_MOUSE -R--N-AKP-PAVFTRISH-YRPWINKI-LRE--------------N--- 229s sp|O35205|GRAK_MOUSE -K-CGIAKK-PGIYTLLTKKYQTWIKSKLAPS-R-----------AH--- 229s sp|Q9Y5K2|KLK4_HUMAN AP-CGQVGV-PGVYTNLCK-FTEWIEKTVQA-S----------------- 229s sp|Q7YRZ7|GRAA_BOVIN K--CGNPQK-PGIYILLTKKHLNWIKKTIAGAI----------------- 229s sp|P29786|TRY3_AEDAE -G-CALPNL-PGVYARVST-VRQWIREV-SEV------------------ 229s sp|P35037|TRY3_ANOGA -G-CAMPGY-PGVYARVAV-VRDWVREN-SGA------------------ 229s sp|P03953|CFAD_MOUSE -RVCGNGKK-PGVYTRVSS-YRMWIE-NITNGNM-----------TS--- 229s sp|P20160|CAP7_HUMAN -P-CGR-G--PDFFTRVAL-FRDWIDGV-L----NNPGP-----GPA--- 229s sp|P80015|CAP7_PIG -R-FRR-S--SGFFTRVAL-FRNWIDSV-L----NNPP------------ 229s sp|P08246|ELNE_HUMAN -G-CASGLY-PDAFAPVAQ-FVNWIDSI-IQRSEDNPCPHPRDPDPASRT 229s sp|Q00871|CTRB1_PENVA SAGCEK-GY-PAAFTRVYY-YLDWIQQK--------T-----GVTP---- 229s sp|P07338|CTRB1_RAT -G-VCSTST-PAVYSRVTA-LMPWVQQI-LEA------------------ 229s sp|P00773|ELA1_RAT SM-GCNVSKKPTVFTRVSA-YISWMNNV-IAY--------------T--- 229s sp|Q91VE3|KLK7_MOUSE YP-CGQPND-PGVYTQVCK-YKRWVMETMKTHR----------------- 229s sp|Q6H321|KLK2_HORSE SE-CADFND-NFVFTKVMP-HLKWIKETIEKNS----------------- 229s sp|P00757|KLKB4_MOUSE EP-CGEPTE-PSVYTKLIK-FSSWIRETMANNP----------------- 229s sp|Q03238|GRAM_RAT KN-CTDIFK-PTVATAVAP-YSSWIRKV-IGRWS-----------PQPLT 229s : *: 229s 229s sp|Q06606|GRZ2_RAT - 229s sp|P08884|GRAE_MOUSE - 229s sp|P21844|MCPT5_MOUSE - 229s sp|O35205|GRAK_MOUSE - 229s sp|Q9Y5K2|KLK4_HUMAN - 229s sp|Q7YRZ7|GRAA_BOVIN - 229s sp|P29786|TRY3_AEDAE - 229s sp|P35037|TRY3_ANOGA - 229s sp|P03953|CFAD_MOUSE - 229s sp|P20160|CAP7_HUMAN - 229s sp|P80015|CAP7_PIG - 229s sp|P08246|ELNE_HUMAN H 229s sp|Q00871|CTRB1_PENVA - 229s sp|P07338|CTRB1_RAT N 229s sp|P00773|ELA1_RAT - 229s sp|Q91VE3|KLK7_MOUSE - 229s sp|Q6H321|KLK2_HORSE - 229s sp|P00757|KLKB4_MOUSE - 229s sp|Q03238|GRAM_RAT - 229s 229s 229s 229s 229s 229s PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 229s -full_log S [0] 229s -genepred_score S [0] nsd 229s -run_name S [0] 229s -mem_mode S [0] mem 229s -extend D [1] 1 229s -extend_mode S [0] very_fast_triplet 229s -max_n_pair D [0] 10 229s -seq_name_for_quadruplet S [0] all 229s -compact S [0] default 229s -clean S [0] no 229s -do_self FL [0] 0 229s -do_normalise D [0] 1000 229s -template_file S [0] 229s -setenv S [0] 0 229s -export S [0] 0 229s -template_mode S [0] 229s -flip D [0] 0 229s -remove_template_file D [0] 0 229s -profile_template_file S [0] 229s -in S [0] 229s -seq S [0] 229s -aln S [0] 229s -method_limits S [0] 229s -method S [0] 229s -lib S [1] sample_aln1.tc_lib 229s -profile S [0] 229s -profile1 S [0] 229s -profile2 S [0] 229s -pdb S [0] 229s -relax_lib D [0] 1 229s -filter_lib D [0] 0 229s -shrink_lib D [0] 0 229s -out_lib W_F [0] no 229s -out_lib_mode S [0] primary 229s -lib_only D [0] 0 229s -outseqweight W_F [0] no 229s -seq_source S [0] ANY 229s -cosmetic_penalty D [0] 0 229s -gapopen D [0] 0 229s -gapext D [0] 0 229s -fgapopen D [0] 0 229s -fgapext D [0] 0 229s -nomatch D [0] 0 229s -newtree W_F [0] default 229s -tree W_F [0] NO 229s -usetree R_F [0] 229s -tree_mode S [0] nj 229s -distance_matrix_mode S [0] ktup 229s -distance_matrix_sim_mode S [0] idmat_sim1 229s -quicktree FL [0] 0 229s -outfile W_F [0] default 229s -maximise FL [1] 1 229s -output S [1] score_ascii html 229s -len D [0] 0 229s -infile R_F [1] sample_aln1.aln 229s -matrix S [0] default 229s -tg_mode D [0] 1 229s -profile_mode S [0] cw_profile_profile 229s -profile_comparison S [0] profile 229s -dp_mode S [0] linked_pair_wise 229s -ktuple D [0] 1 229s -ndiag D [0] 0 229s -diag_threshold D [0] 0 229s -diag_mode D [0] 0 229s -sim_matrix S [0] vasiliky 229s -transform S [0] 229s -extend_seq FL [0] 0 229s -outorder S [0] input 229s -inorder S [0] aligned 229s -seqnos S [0] off 229s -case S [0] keep 229s -cpu D [0] 0 229s -ulimit D [0] -1 229s -maxnseq D [0] -1 229s -maxlen D [0] -1 229s -sample_dp D [0] 0 229s -weight S [0] default 229s -seq_weight S [0] no 229s -align FL [1] 1 229s -mocca FL [0] 0 229s -domain FL [0] 0 229s -start D [0] 0 229s -len D [0] 0 229s -scale D [0] 0 229s -mocca_interactive FL [0] 0 229s -method_evaluate_mode S [0] default 229s -color_mode S [0] new 229s -aln_line_length D [0] 0 229s -evaluate_mode S [0] triplet 229s -get_type FL [0] 0 229s -clean_aln D [0] 0 229s -clean_threshold D [1] 1 229s -clean_iteration D [1] 1 229s -clean_evaluate_mode S [0] t_coffee_fast 229s -extend_matrix FL [0] 0 229s -prot_min_sim D [40] 40 229s -prot_max_sim D [90] 90 229s -prot_trim D [20] 20 229s -prot_min_cov D [40] 40 229s -pdb_type S [0] d 229s -pdb_min_sim D [35] 35 229s -pdb_max_sim D [100] 100 229s -pdb_min_cov D [50] 50 229s -pdb_blast_server W_F [0] EBI 229s -blast W_F [0] 229s -blast_server W_F [0] EBI 229s -pdb_db W_F [0] pdb 229s -protein_db W_F [0] uniref50 229s -method_log W_F [0] no 229s -struc_to_use S [0] 229s -cache W_F [0] use 229s -print_cache FL [0] 0 229s -align_pdb_param_file W_F [0] no 229s -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble 229s -external_aligner S [0] NO 229s -msa_mode S [0] tree 229s -et_mode S [0] et 229s -master S [0] no 229s -blast_nseq D [0] 0 229s -lalign_n_top D [0] 10 229s -iterate D [1] 0 229s -trim D [0] 0 229s -split D [0] 0 229s -trimfile S [0] default 229s -split D [0] 0 229s -split_nseq_thres D [0] 0 229s -split_score_thres D [0] 0 229s -check_pdb_status D [0] 0 229s -clean_seq_name D [0] 0 229s -seq_to_keep S [0] 229s -dpa_master_aln S [0] 229s -dpa_maxnseq D [0] 0 229s -dpa_min_score1 D [0] 229s -dpa_min_score2 D [0] 229s -dpa_keep_tmpfile FL [0] 0 229s -dpa_debug D [0] 0 229s -multi_core S [0] templates_jobs_relax_msa_evaluate 229s -n_core D [0] 1 229s -thread D [0] 1 229s -max_n_proc D [0] 0 229s -lib_list S [0] 229s -prune_lib_mode S [0] 5 229s -tip S [0] none 229s -rna_lib S [0] 229s -no_warning D [0] 0 229s -run_local_script D [0] 0 229s -proxy S [0] unset 229s -email S [0] 229s -clean_overaln D [0] 0 229s -overaln_param S [0] 229s -overaln_mode S [0] 229s -overaln_model S [0] 229s -overaln_threshold D [0] 0 229s -overaln_target D [0] 0 229s -overaln_P1 D [0] 0 229s -overaln_P2 D [0] 0 229s -overaln_P3 D [0] 0 229s -overaln_P4 D [0] 0 229s -exon_boundaries S [0] 229s -display D [0] 100 229s 229s INPUT FILES 229s Input File (S) sample_aln1.aln Format clustal_aln 229s Input File (L) sample_aln1.tc_lib 229s 229s Identify Master Sequences [no]: 229s 229s Master Sequences Identified 229s INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] 229s Input File sample_aln1.aln Seq 1cms Length 175 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq 1cms_1 Length 148 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq 2apr Length 178 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq 3app Length 174 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq 4ape Length 178 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq 4pep Length 174 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq hmgb_chite Length 74 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq hmgl_trybr Length 67 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq hmgl_wheat Length 79 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq hmgt_mouse Length 71 type PROTEIN Struct Unchecked 229s 229s Multi Core Mode: 1 processors: 229s 5 229s -tip S [0] none 229s -rna_lib S [0] 229s -no_warning D [0] 0 229s -run_local_script D [0] 0 229s -proxy S [0] unset 229s -email S [0] 229s -clean_overaln D [0] 0 229s -overaln_param S [0] 229s -overaln_mode S [0] 229s -overaln_model S [0] 229s -overaln_threshold D [0] 0 229s -overaln_target D [0] 0 229s -overaln_P1 D [0] 0 229s -overaln_P2 D [0] 0 229s -overaln_P3 D [0] 0 229s -overaln_P4 D [0] 0 229s -exon_boundaries S [0] 229s -display D [0] 100 229s 229s INPUT FILES 229s Input File (S) sample_aln1.aln Format clustal_aln 229s Input File (L) sample_aln1.tc_lib 229s 229s Identify Master Sequences [no]: 229s 229s Master Sequences Identified 229s INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] 229s Input File sample_aln1.aln Seq 1cms Length 175 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq 1cms_1 Length 148 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq 2apr Length 178 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq 3app Length 174 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq 4ape Length 178 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq 4pep Length 174 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq hmgb_chite Length 74 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq hmgl_trybr Length 67 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq hmgl_wheat Length 79 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq hmgt_mouse Length 71 type PROTEIN Struct Unchecked 229s 229s Multi Core Mode: 1 processors: 229s 229s --- Process Method/Library/Aln Ssample_aln1.aln 229s xxx Retrieved Ssample_aln1.aln 5 229s -tip S [0] none 229s -rna_lib S [0] 229s -no_warning D [0] 0 229s -run_local_script D [0] 0 229s -proxy S [0] unset 229s -email S [0] 229s -clean_overaln D [0] 0 229s -overaln_param S [0] 229s -overaln_mode S [0] 229s -overaln_model S [0] 229s -overaln_threshold D [0] 0 229s -overaln_target D [0] 0 229s -overaln_P1 D [0] 0 229s -overaln_P2 D [0] 0 229s -overaln_P3 D [0] 0 229s -overaln_P4 D [0] 0 229s -exon_boundaries S [0] 229s -display D [0] 100 229s 229s INPUT FILES 229s Input File (S) sample_aln1.aln Format clustal_aln 229s Input File (L) sample_aln1.tc_lib 229s 229s Identify Master Sequences [no]: 229s 229s Master Sequences Identified 229s INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] 229s Input File sample_aln1.aln Seq 1cms Length 175 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq 1cms_1 Length 148 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq 2apr Length 178 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq 3app Length 174 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq 4ape Length 178 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq 4pep Length 174 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq hmgb_chite Length 74 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq hmgl_trybr Length 67 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq hmgl_wheat Length 79 type PROTEIN Struct Unchecked 229s Input File sample_aln1.aln Seq hmgt_mouse Length 71 type PROTEIN Struct Unchecked 229s 229s Multi Core Mode: 1 processors: 229s 229s --- Process Method/Library/Aln Ssample_aln1.aln 229s xxx Retrieved Ssample_aln1.aln 229s --- Process Method/Library/Aln Lsample_aln1.tc_lib 229s xxx Retrieved Lsample_aln1.tc_lib 229s 229s All Methods Retrieved 229s 229s MANUAL PENALTIES: gapopen=0 gapext=0 229s 229s Library Total Size: [2422] 229s 229s Library Relaxation: Multi_proc [1] 229s 229s ! [Relax Library][TOT= 10][ 0 %] ! [Relax Library][TOT= 10][ 20 %] ! [Relax Library][TOT= 10][ 30 %] ! [Relax Library][TOT= 10][ 40 %] ! [Relax Library][TOT= 10][ 50 %] ! [Relax Library][TOT= 10][ 60 %] ! [Relax Library][TOT= 10][ 70 %] ! [Relax Library][TOT= 10][ 80 %] ! [Relax Library][TOT= 10][ 90 %] ! [Relax Library][TOT= 10][100 %] 229s 229s ! [Final Evaluation][TOT= 217][ 0 %] ! [Final Evaluation][TOT= 217][ 1 %] ! [Final Evaluation][TOT= 217][ 2 %] ! [Final Evaluation][TOT= 217][ 3 %] ! [Final Evaluation][TOT= 217][ 4 %] ! [Final Evaluation][TOT= 217][ 5 %] ! [Final Evaluation][TOT= 217][ 6 %] ! [Final Evaluation][TOT= 217][ 7 %] ! [Final Evaluation][TOT= 217][ 8 %] ! [Final Evaluation][TOT= 217][ 9 %] ! [Final Evaluation][TOT= 217][ 10 %] ! [Final Evaluation][TOT= 217][ 11 %] ! [Final Evaluation][TOT= 217][ 12 %] ! [Final Evaluation][TOT= 217][ 13 %] ! [Final Evaluation][TOT= 217][ 14 %] ! [Final Evaluation][TOT= 217][ 15 %] ! [Final Evaluation][TOT= 217][ 16 %] ! [Final Evaluation][TOT= 217][ 17 %] ! [Final Evaluation][TOT= 217][ 18 %] ! [Final Evaluation][TOT= 217][ 19 %] ! [Final Evaluation][TOT= 217][ 20 %] ! [Final Evaluation][TOT= 217][ 21 %] ! [Final Evaluation][TOT= 217][ 22 %] ! [Final Evaluation][TOT= 217][ 23 %] ! [Final Evaluation][TOT= 217][ 24 %] ! [Final Evaluation][TOT= 217][ 25 %] ! [Final Evaluation][TOT= 217][ 26 %] ! [Final Evaluation][TOT= 217][ 27 %] ! [Final Evaluation][TOT= 217][ 28 %] ! [Final Evaluation][TOT= 217][ 29 %] ! [Final Evaluation][TOT= 217][ 30 %] ! [Final Evaluation][TOT= 217][ 31 %] ! [Final Evaluation][TOT= 217][ 32 %] ! [Final Evaluation][TOT= 217][ 33 %] ! [Final Evaluation][TOT= 217][ 34 %] ! [Final Evaluation][TOT= 217][ 35 %] ! [Final Evaluation][TOT= 217][ 36 %] ! [Final Evaluation][TOT= 217][ 37 %] ! [Final Evaluation][TOT= 217][ 38 %] ! [Final Evaluation][TOT= 217][ 39 %] ! [Final Evaluation][TOT= 217][ 40 %] ! [Final Evaluation][TOT= 217][ 41 %] ! [Final Evaluation][TOT= 217][ 42 %] ! [Final Evaluation][TOT= 217][ 43 %] ! [Final Evaluation][TOT= 217][ 44 %] ! [Final Evaluation][TOT= 217][ 45 %] ! [Final Evaluation][TOT= 217][ 46 %] ! [Final Evaluation][TOT= 217][ 47 %] ! [Final Evaluation][TOT= 217][ 48 %] ! [Final Evaluation][TOT= 217][ 49 %] ! [Final Evaluation][TOT= 217][ 50 %] ! [Final Evaluation][TOT= 217][ 51 %] ! [Final Evaluation][TOT= 217][ 52 %] ! [Final Evaluation][TOT= 217][ 53 %] ! [Final Evaluation][TOT= 217][ 54 %] ! [Final Evaluation][TOT= 217][ 55 %] ! [Final Evaluation][TOT= 217][ 56 %] ! [Final Evaluation][TOT= 217][ 57 %] ! [Final Evaluation][TOT= 217][ 58 %] ! [Final Evaluation][TOT= 217][ 59 %] ! [Final Evaluation][TOT= 217][ 60 %] ! [Final Evaluation][TOT= 217][ 61 %] ! [Final Evaluation][TOT= 217][ 62 %] ! [Final Evaluation][TOT= 217][ 63 %] ! [Final Evaluation][TOT= 217][ 64 %] ! [Final Evaluation][TOT= 217][ 65 %] ! [Final Evaluation][TOT= 217][ 66 %] ! [Final Evaluation][TOT= 217][ 67 %] ! [Final Evaluation][TOT= 217][ 68 %] ! [Final Evaluation][TOT= 217][ 69 %] ! [Final Evaluation][TOT= 217][ 70 %] ! [Final Evaluation][TOT= 217][ 71 %] ! [Final Evaluation][TOT= 217][ 72 %] ! [Final Evaluation][TOT= 217][ 73 %] ! [Final Evaluation][TOT= 217][ 74 %] ! [Final Evaluation][TOT= 217][ 75 %] ! [Final Evaluation][TOT= 217][ 76 %] ! [Final Evaluation][TOT= 217][ 77 %] ! [Final Evaluation][TOT= 217][ 78 %] ! [Final Evaluation][TOT= 217][ 79 %] ! [Final Evaluation][TOT= 217][ 80 %] ! [Final Evaluation][TOT= 217][ 81 %] ! [Final Evaluation][TOT= 217][ 82 %] ! [Final Evaluation][TOT= 217][ 83 %] ! [Final Evaluation][TOT= 217][ 84 %] ! [Final Evaluation][TOT= 217][ 85 %] ! [Final Evaluation][TOT= 217][ 86 %] ! [Final Evaluation][TOT= 217][ 87 %] ! [Final Evaluation][TOT= 217][ 88 %] ! [Final Evaluation][TOT= 217][ 89 %] ! [Final Evaluation][TOT= 217][ 90 %] ! [Final Evaluation][TOT= 217][ 91 %] ! [Final Evaluation][TOT= 217][ 92 %] ! [Final Evaluation][TOT= 217][ 93 %] ! [Final Evaluation][TOT= 217][ 94 %] ! [Final Evaluation][TOT= 217][ 95 %] ! [Final Evaluation][TOT= 217][ 96 %] ! [Final Evaluation][TOT= 217][ 97 %] ! [Final Evaluation][TOT= 217][ 98 %] ! [Final Evaluation][TOT= 217][ 99 %] ! [Final Evaluation][TOT= 217][100 %] 229s 230s 5 230s -tip S [0] none 230s -rna_lib S [0] 230s -no_warning D [0] 0 230s -run_local_script D [0] 0 230s -proxy S [0] unset 230s -email S [0] 230s -clean_overaln D [0] 0 230s -overaln_param S [0] 230s -overaln_mode S [0] 230s -overaln_model S [0] 230s -overaln_threshold D [0] 0 230s -overaln_target D [0] 0 230s -overaln_P1 D [0] 0 230s -overaln_P2 D [0] 0 230s -overaln_P3 D [0] 0 230s -overaln_P4 D [0] 0 230s -exon_boundaries S [0] 230s -display D [0] 100 230s 230s INPUT FILES 230s Input File (S) sample_aln1.aln Format clustal_aln 230s Input File (L) sample_aln1.tc_lib 230s 230s Identify Master Sequences [no]: 230s 230s Master Sequences Identified 230s INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] 230s Input File sample_aln1.aln Seq 1cms Length 175 type PROTEIN Struct Unchecked 230s Input File sample_aln1.aln Seq 1cms_1 Length 148 type PROTEIN Struct Unchecked 230s Input File sample_aln1.aln Seq 2apr Length 178 type PROTEIN Struct Unchecked 230s Input File sample_aln1.aln Seq 3app Length 174 type PROTEIN Struct Unchecked 230s Input File sample_aln1.aln Seq 4ape Length 178 type PROTEIN Struct Unchecked 230s Input File sample_aln1.aln Seq 4pep Length 174 type PROTEIN Struct Unchecked 230s Input File sample_aln1.aln Seq hmgb_chite Length 74 type PROTEIN Struct Unchecked 230s Input File sample_aln1.aln Seq hmgl_trybr Length 67 type PROTEIN Struct Unchecked 230s Input File sample_aln1.aln Seq hmgl_wheat Length 79 type PROTEIN Struct Unchecked 230s Input File sample_aln1.aln Seq hmgt_mouse Length 71 type PROTEIN Struct Unchecked 230s 230s Multi Core Mode: 1 processors: 230s 230s --- Process Method/Library/Aln Ssample_aln1.aln 230s xxx Retrieved Ssample_aln1.aln 230s --- Process Method/Library/Aln Lsample_aln1.tc_lib 230s xxx Retrieved Lsample_aln1.tc_lib 230s 230s All Methods Retrieved 230s 230s MANUAL PENALTIES: gapopen=0 gapext=0 230s 230s Library Total Size: [2422] 230s 230s Library Relaxation: Multi_proc [1] 230s 230s Relaxation Summary: [2422]--->[992] 230s 230s 230s 230s UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 230s 230s 230s OUTPUT RESULTS 230s #### File Type= MSA Format= score_ascii Name= sample_aln1.score_ascii 230s #### File Type= MSA Format= html Name= sample_aln1.html 230s 230s # Command Line: t_coffee -infile sample_aln1.aln -lib sample_aln1.tc_lib -special_mode evaluate [PROGRAM:T-COFFEE] 230s # T-COFFEE Memory Usage: Current= 212.697 Mb, Max= 228.771 Mb 230s # Results Produced with T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 230s # T-COFFEE is available from http://www.tcoffee.org 230s # Register on: https://groups.google.com/group/tcoffee/ 231s CLUSTAL W (1.83) multiple sequence alignment 231s 231s sp|Q06606|GRZ2_RAT -------------------------------------------mflflff 231s sp|P08884|GRAE_MOUSE -------------------------m--------ppvlilltlllplgag 231s sp|P21844|MCPT5_MOUSE ------------------------mh--------lltlhllllllgsstk 231s sp|O35205|GRAK_MOUSE --------------------mrfssw--------alvslvagvymssecf 231s sp|Q9Y5K2|KLK4_HUMAN ---------------matagnpwgwf--------lgylilgvagslvsgs 231s sp|Q7YRZ7|GRAA_BOVIN -----------------mnipfpfsf--------ppaiclllipgvfpvs 231s sp|Q00871|CTRB1_PENVA migklslllvcvavasgnpaagkpwh--------wkspkplvdprihvna 231s sp|P08246|ELNE_HUMAN ----------------mtlgrrlacl--------flacvlpalllggtal 231s sp|P03953|CFAD_MOUSE --------------------mhssvy--------fvalvilgaavcaaqp 231s sp|Q91VE3|KLK7_MOUSE --------------------mgvwll--------slitvllslaletagq 231s sp|Q6H321|KLK2_HORSE ---------------------mwflv--------lcldlslgetgalppi 231s sp|Q03238|GRAM_RAT -------------------------l--------llllalktlwavgnrf 231s sp|P20160|CAP7_HUMAN -------------------mtrltvl--------allagllassragssp 231s sp|P07338|CTRB1_RAT --------------------maflwlvscfalvgatfgcgvptiqpvltg 231s sp|P00757|KLKB4_MOUSE ----------------------------------mwflilflalslggid 231s sp|P80015|CAP7_PIG -------------------------------------------------- 231s sp|P29786|TRY3_AEDAE ------mnqflfvsfcalldsakvsa--------------------atls 231s sp|P35037|TRY3_ANOGA -----misnkiaillavlvvavacaqarvaqqhrsvqalprflprpkydv 231s sp|P00773|ELA1_RAT -------------------mlrflvf--------aslvlyghstqdfpet 231s 231s 231s sp|Q06606|GRZ2_RAT lvailpvnteggeiiwgteskphsrpymafik---fy----dsnsephhc 231s sp|P08884|GRAE_MOUSE aeeii-----ggh-----vvkphsrpymafvk---svdiegnr----ryc 231s sp|P21844|MCPT5_MOUSE ageii-----ggt-----eciphsrpymayleivtse----ny-l--sac 231s sp|O35205|GRAK_MOUSE hteii-----ggr-----evqphsrpfmasiq---yr----sk----hic 231s sp|Q9Y5K2|KLK4_HUMAN csqii-----nge-----dcsphsqpwqaalv---me----ne----lfc 231s sp|Q7YRZ7|GRAA_BOVIN cegii-----ggn-----evaphtrrymalik--gl------k-----lc 231s sp|Q00871|CTRB1_PENVA tpriv-----ggv-----eatphswphqaalf---id----dm----yfc 231s sp|P08246|ELNE_HUMAN aseiv-----ggr-----rarphawpfmvslq---lr----gg----hfc 231s sp|P03953|CFAD_MOUSE rgril-----ggq-----eaaaharpymasvq---vn----gt----hvc 231s sp|Q91VE3|KLK7_MOUSE gerii-----dgy-----kckegshpwqvall---kg----nq----lhc 231s sp|Q6H321|KLK2_HORSE qsrii-----ggw-----ecekhskpwqvavy---hq----gh----fqc 231s sp|Q03238|GRAM_RAT eaqii-----ggr-----eavphsrpymvslq---nt----ks----hmc 231s sp|P20160|CAP7_HUMAN lldiv-----ggr-----karprqfpflasiq---nq----gr----hfc 231s sp|P07338|CTRB1_RAT lsriv-----nge-----daipgswpwqvslq---dk---tgf----hfc 231s sp|P00757|KLKB4_MOUSE aappv-----qsq-----vdcensqpwhvavy---rf----nk----yqc 231s sp|P80015|CAP7_PIG ---iv-----ggr-----raqpqefpflasiq---kq----gr----pfc 231s sp|P29786|TRY3_AEDAE sgriv-----ggf-----qidiaevphqvslq--rsg-----r----hfc 231s sp|P35037|TRY3_ANOGA ghriv-----ggf-----eidvsetpyqvslq--yfn-----s----hrc 231s sp|P00773|ELA1_RAT narvv-----gga-----earrnswpsqislq---ylsggswy----htc 231s : . : * 231s 231s sp|Q06606|GRZ2_RAT ggflvakdivmtaahc----ng-------r----nik---vtlgahni-- 231s sp|P08884|GRAE_MOUSE ggflvqddfvltaahc----rn-------r----tmt---vtlgahni-- 231s sp|P21844|MCPT5_MOUSE sgflirrnfvltaahc----ag-------r----sit---vllgahnk-- 231s sp|O35205|GRAK_MOUSE ggvlihpqwvltaahc----y-swfprg-h----spt---vvlgahsl-- 231s sp|Q9Y5K2|KLK4_HUMAN sgvlvhpqwvlsaahc----fq-------n----syt---iglglhsl-e 231s sp|Q7YRZ7|GRAA_BOVIN agalikenwvltaahc----dlk------g----npq---vilgahst-- 231s sp|Q00871|CTRB1_PENVA ggslissewvltaahc----md-------g--agfv---evvlgahni-- 231s sp|P08246|ELNE_HUMAN gatliapnfvmsaahc----van------v----nvravrvvlgahnl-- 231s sp|P03953|CFAD_MOUSE ggtlldeqwvlsaahc----mdgvtddd------svq---vllgahsl-- 231s sp|Q91VE3|KLK7_MOUSE ggvlvdkywvltaahc----km-------g----qyq---vqlgsdki-- 231s sp|Q6H321|KLK2_HORSE ggvlvhpqwvltaahc----ms-------d----dyq---iwlgrhnl-- 231s sp|Q03238|GRAM_RAT ggvlvhqkwvltaahc----lse----plq----qlk---lvfglhslhd 231s sp|P20160|CAP7_HUMAN ggaliharfvmtaasc----fqs---qnpg----vs---tvvlgaydl-- 231s sp|P07338|CTRB1_RAT ggslisedwvvtaahc----gvk------ts----dv---vvagefdq-- 231s sp|P00757|KLKB4_MOUSE ggvlldrnwvltaahc----yn-------d----kyq---vwlgknnf-- 231s sp|P80015|CAP7_PIG agalvhprfvltaasc----frg---knsg----sa---svvlgaydl-- 231s sp|P29786|TRY3_AEDAE ggsiisprwvltrahc----tt-------ntdpaayt---iragstd--- 231s sp|P35037|TRY3_ANOGA ggsvlnskwiltaahctvnlqp-------ss----la---vrlgssr--- 231s sp|P00773|ELA1_RAT ggtlirrnwvmtaahc----vss------q----mtf--rvvvgdhnl-- 231s .. :: ::: * * : * 231s 231s sp|Q06606|GRZ2_RAT -kkqe-ntq-visvvkakphenydr-----------dsh-----fndiml 231s sp|P08884|GRAE_MOUSE -kake-etqqiipvakaiphpdyna-----------taf-----fsdiml 231s sp|P21844|MCPT5_MOUSE -tske-dtwqklevekqflhpkyde-----------nlv-----vhdiml 231s sp|O35205|GRAK_MOUSE -skne-pmkqtfeikkfipfsrlqs-----------gsa-----shdiml 231s sp|Q9Y5K2|KLK4_HUMAN ad-qe-pgsqmveaslsvrhpeyn-----------rpll-----andlml 231s sp|Q7YRZ7|GRAA_BOVIN -shke-kldqvfsikkaipypcfdp-----------qtf-----egdlql 231s sp|Q00871|CTRB1_PENVA -rqnea-sqvsitstdffthenwns-----------wll-----tndial 231s sp|P08246|ELNE_HUMAN -srre-ptrqvfavqrifen-gydp-----------vnl-----lndivi 231s sp|P03953|CFAD_MOUSE -sape-pykrwydvqsvvphpgsrp-----------dsl-----eddlil 231s sp|Q91VE3|KLK7_MOUSE -gdq---saqkikatksfrhpgys-----------tkth-----vndiml 231s sp|Q6H321|KLK2_HORSE -sede-dtaqfhqvsdsfldpqfdlsllkkkylrpyddi-----shdlml 231s sp|Q03238|GRAM_RAT pqdp----gltfyikqaikhpgynl------------ky-----endlal 231s sp|P20160|CAP7_HUMAN -rrrerqsrqtfsissmsen-gydp-----------qqn-----lndlml 231s sp|P07338|CTRB1_RAT -gsde-eniqvlkiaqvfknpkf----------------nmftvrnditl 231s sp|P00757|KLKB4_MOUSE -lede-psdqhrlvskaiphpdfnmsllnehtpqpeddy-----sndlml 231s sp|P80015|CAP7_PIG -rqqe-qsrqtfsirsisqn-gydp-----------rqn-----lndvll 231s sp|P29786|TRY3_AEDAE -rtng-gi--ivkvksviphpqyn---------gdtyny-------dfsl 231s sp|P35037|TRY3_ANOGA -hasg-gt--vvrvarvlehpnyd-----------dstid-----ydfsl 231s sp|P00773|ELA1_RAT -sqnd-gteqyvsvqkimvhptwns-----------nnv---aagydial 231s *. : 231s 231s sp|Q06606|GRZ2_RAT lklerkaqlngvvktia-lp--rsq-dw-vkpgqvctvagwgr-----la 231s sp|P08884|GRAE_MOUSE lkleskakrtkavrplk-lp--rpn-ar-vkpgdvcsvagwgsrsindt- 231s sp|P21844|MCPT5_MOUSE lklkekakltlgvgtlp-ls--an-fnf-ippgrmcravgwgr-----tn 231s sp|O35205|GRAK_MOUSE iklrtaaelnknvqllh-lg--s--kny-lrdgtkcqvtgwgt-----tk 231s sp|Q9Y5K2|KLK4_HUMAN ikldesvsesdtirsis-ia--s---qc-ptagnsclvsgwgl-----la 231s sp|Q7YRZ7|GRAA_BOVIN lqlegkatmtkavgilq-lp--rt-edd-vkphtkchvagwgs-----tk 231s sp|Q00871|CTRB1_PENVA irlpspvslnsniktvk-lp--s---sd-vsvgttvtptgwgr-----ps 231s sp|P08246|ELNE_HUMAN lqlngsatinanvqvaq-lp--aq-grr-lgngvqclamgwgl-----lg 231s sp|P03953|CFAD_MOUSE fklsqnaslgphvrplplqy-----edkevepgtlcdvagwgv-----vt 231s sp|Q91VE3|KLK7_MOUSE vrldepvkmsskveavq-lp--e---hc-eppgtsctvsgwgt-----tt 231s sp|Q6H321|KLK2_HORSE lrlaqparitdavkild-lp--t---qe-pklgstcytsgwgl-----is 231s sp|Q03238|GRAM_RAT lkldgrvkpsknvkpla-lp--rkprdk-paegsrcstagwgi-----th 231s sp|P20160|CAP7_HUMAN lqldreanltssvtilp-lp--lq-nat-veagtrcqvagwgs-----qr 231s sp|P07338|CTRB1_RAT lklatpaqfsetvsavc-lp--nvd-dd-fppgtvcattgwgk-----tk 231s sp|P00757|KLKB4_MOUSE lrlskpaditdvvkpit-lp--t---ee-pklgstclasgwgs-----tt 231s sp|P80015|CAP7_PIG lqldrearltpsvalvp-lp--pq-nat-veagtncqvagwgt-----qr 231s sp|P29786|TRY3_AEDAE leldesigfsrsieaia-lpdase---t-vadgamctvsgwgd-----t- 231s sp|P35037|TRY3_ANOGA meleseltfsdvvqpvs-lp--dqd-ea-vedgtmtivsgwgn-----tq 231s sp|P00773|ELA1_RAT lrlaqsvtlnnyvqlav-lp--qe-gti-lannnpcyitgwgr-----tr 231s ..* : *** 231s 231s sp|Q06606|GRZ2_RAT n-c-t--s-snt---lqevnlevqkgqkcqd----mse--dynd-siqlc 231s sp|P08884|GRAE_MOUSE ----------kasarlreaqlviqedeeckk----rfr--hy-tetteic 231s sp|P21844|MCPT5_MOUSE vne-p--a-sdt---lqevkmrlqepqackh-----ft--sfrh-nsqlc 231s sp|O35205|GRAK_MOUSE pdllt--a-sdt---lrevtvtiisrkrcns--qsyynhkpvit-kdmic 231s sp|Q9Y5K2|KLK4_HUMAN --ngr--m-ptv---lqcvnvsvvseevcsk----lyd--plyh-psmfc 231s sp|Q7YRZ7|GRAA_BOVIN kdacq--m-sna---lreanvtvidrkicnd--aqhynfnpvid-lsmic 231s sp|Q00871|CTRB1_PENVA dsasg--i-sdv---lrqvnvpvmtnadcds----vyg---ivg-dgvvc 231s sp|P08246|ELNE_HUMAN rnr-g--i-asv---lqelnvtvvt-slc--------------r-rsnvc 231s sp|P03953|CFAD_MOUSE hag-r--r-pdv---lhqlrvsimnrttcnl--rtyhd--gvvt-inmmc 231s sp|Q91VE3|KLK7_MOUSE spdvt--f-psd---lmcsdvklissreckk----vyk--dllg-ktmlc 231s sp|Q6H321|KLK2_HORSE tftnr--g-sgt---lqcvelrlqsnekcar----ayp--ekmt-efvlc 231s sp|Q03238|GRAM_RAT qrg-q--l-aks---lqeldlrlldtrmcnn--srfwn--gvlt-dsmlc 231s sp|P20160|CAP7_HUMAN sgg-r--l-srf---prfvnvtvtpedqc--------------r-pnnvc 231s sp|P07338|CTRB1_RAT y---nalktpek---lqqaalpivseadck----kswg--skit-dvmtc 231s sp|P00757|KLKB4_MOUSE pikfk--y-pdd---lqcvnlkllpnedcdk----ahe--mkvt-damlc 231s sp|P80015|CAP7_PIG lr--r--lfsrf---prvlnvtvt-snpc--------------l-prdmc 231s sp|P29786|TRY3_AEDAE knv-f---emnt--llravnvpsynqaecaaalvnvvp----vt-eqmic 231s sp|P35037|TRY3_ANOGA sa--a---esna--ilraanvptvnqkect----iaysssggit-drmlc 231s sp|P00773|ELA1_RAT tng-q--l-sqt---lqqaylpsvdysicss--ssywg--stvk-ttmvc 231s : * * 231s 231s sp|Q06606|GRZ2_RAT vg--npse--g--k--atgkgdsggpfvcd----g--vaqgivsyrl-c- 231s sp|P08884|GRAE_MOUSE ag--dlkk--i--k--tpfkgdsggplvcd----n--kaygllayak-n- 231s sp|P21844|MCPT5_MOUSE vg--npkk--m--q--nvykgdsggpllca----g--iaqgiasyvh-r- 231s sp|O35205|GRAK_MOUSE ag--d--a--r--gqkdsckgdsggplick----g--ifhalvsqgy-k- 231s sp|Q9Y5K2|KLK4_HUMAN ag--g--g--qdqk--dscngdsggplicn------gylqglvsfgk--a 231s sp|Q7YRZ7|GRAA_BOVIN ag--g--r--k--geddscegdsgsplicd------nvfrgvtsfg---- 231s sp|Q00871|CTRB1_PENVA id--g--t--g--g-kstcngdsggplnln------gmtygitsfgs-sa 231s sp|P08246|ELNE_HUMAN tl--v--rgrq--a--gvcfgdsgsplvcn------glihgiasfvr-g- 231s sp|P03953|CFAD_MOUSE ae--s--n--r--r--dtcrgdsgsplvcg----d--avegvvtwgs-r- 231s sp|Q91VE3|KLK7_MOUSE ag--i--p--dskt--ntcngdsggplvcn------dtlqglvswgt--y 231s sp|Q6H321|KLK2_HORSE athrd--d----sg--siclgdsggalicd------gvfqgitswgy--s 231s sp|Q03238|GRAM_RAT lk--agak--g--q--apckgdsggplvcg----k-gkvdgilsfss-k- 231s sp|P20160|CAP7_HUMAN tg--v--ltrr--g--gicngdggtplvce------glahgvasfsl-g- 231s sp|P07338|CTRB1_RAT ag--a--s--g--v--sscmgdsggplvcqkd--gvwtlagivswgs-g- 231s sp|P00757|KLKB4_MOUSE ag--e--m--dggs--ytcehdsggplicd------gilqgitswgp--e 231s sp|P80015|CAP7_PIG ig--v--fsrr--g--risqgdrgtplvcn------glaqgvasflr-r- 231s sp|P29786|TRY3_AEDAE ag--y--aa-g--g-kdscqgdsggplvsg------dklvgvvswgk-g- 231s sp|P35037|TRY3_ANOGA ag--y--krgg--k--dacqgdsggplvvd------gklvgvvswgf-g- 231s sp|P00773|ELA1_RAT ag--g--d-gv--r--sgcqgdsggplhclvngqy--svhgvtsfvssm- 231s * * .: .: : 231s 231s sp|Q06606|GRZ2_RAT tg-t----l-p-rvftriss-fipwiqktmk--vlqqs------------ 231s sp|P08884|GRAE_MOUSE ---rti-ss-g--vftkivh-flpwisrnmkl-l---------------- 231s sp|P21844|MCPT5_MOUSE na-k------ppavftrish-yrpwinkilren----------------- 231s sp|O35205|GRAK_MOUSE -c-g-i-akkp-giytlltkkyqtwiksklapsrah-------------- 231s sp|Q9Y5K2|KLK4_HUMAN pcgq-v-gv-p-gvytnlck-ftewiektvqa-s---------------- 231s sp|Q7YRZ7|GRAA_BOVIN kc-g-n-pqkp-giyilltkkhlnwikktiagai---------------- 231s sp|Q00871|CTRB1_PENVA gc-e-k-gy-p-aaftrvyy-yldwiqqktgvtp---------------- 231s sp|P08246|ELNE_HUMAN gcas-g-ly-p-dafapvaq-fvnwidsiiq-rsednpcphprdpdpasr 231s sp|P03953|CFAD_MOUSE vc-g-n-gkkp-gvytrvss-yrmwienitngnmts-------------- 231s sp|Q91VE3|KLK7_MOUSE pcgq-p-nd-p-gvytqvck-ykrwvmetmkthr---------------- 231s sp|Q6H321|KLK2_HORSE ec-a-d-fndn-fvftkvmp-hlkwiketiekns---------------- 231s sp|Q03238|GRAM_RAT nc-tdi-fk-p-tvatavap-ysswirkvigr-wspqplt---------- 231s sp|P20160|CAP7_HUMAN pc-g-r--g-p-dfftrval-frdwidgvlnnpgpgpa------------ 231s sp|P07338|CTRB1_RAT vc-s-t-st-p-avysrvta-lmpwvqqilean----------------- 231s sp|P00757|KLKB4_MOUSE pc-g-epte-p-svytklik-fsswiretmannp---------------- 231s sp|P80015|CAP7_PIG rf-r-r--s-s-gfftrval-frnwidsvlnnpp---------------- 231s sp|P29786|TRY3_AEDAE -c-a-l-pnlp-gvyarvst-vrqwirevsev------------------ 231s sp|P35037|TRY3_ANOGA ca-m-p-gy-p-gvyarvav-vrdwvrensga------------------ 231s sp|P00773|ELA1_RAT gc-nvs-kk-p-tvftrvsa-yiswmnnviayt----------------- 231s : *: 231s 231s sp|Q06606|GRZ2_RAT -- 231s sp|P08884|GRAE_MOUSE -- 231s sp|P21844|MCPT5_MOUSE -- 231s sp|O35205|GRAK_MOUSE -- 231s sp|Q9Y5K2|KLK4_HUMAN -- 231s sp|Q7YRZ7|GRAA_BOVIN -- 231s sp|Q00871|CTRB1_PENVA -- 231s sp|P08246|ELNE_HUMAN th 231s sp|P03953|CFAD_MOUSE -- 231s sp|Q91VE3|KLK7_MOUSE -- 231s sp|Q6H321|KLK2_HORSE -- 231s sp|Q03238|GRAM_RAT -- 231s sp|P20160|CAP7_HUMAN -- 231s sp|P07338|CTRB1_RAT -- 231s sp|P00757|KLKB4_MOUSE -- 231s sp|P80015|CAP7_PIG -- 231s sp|P29786|TRY3_AEDAE -- 231s sp|P35037|TRY3_ANOGA -- 231s sp|P00773|ELA1_RAT -- 231s 231s 231s 231s 231s CLUSTAL W (1.83) multiple sequence alignment 231s 231s hmgb_chite AD---KPKRPLSaY------M---------------LWLNSARESI---- 231s hmgt_mouse K-----PKRPRSAY------N---------------IYVSESFQEA---- 231s hmgl_wheat DP--NKPKRAPSAF------F---------------VFMGEFREEF---- 231s hmgl_trybr KKDSNAPKRAMTSF------M---------------FFSSDFRSKH---- 231s 1cms GE---VASVPLTNY------LDSQYFGKIYLGTPPQEFTVLFDTGSSDFW 231s 4pep -----IGDEPLENY------LDTEYFGTIGIGTPAQDFTVIFDTGSSNLW 231s 4ape STG-SATTTPIDS-------LDDAYITPVQIGTPAQTLNLDFDTGSSDLW 231s 3app AASGVATNTPTA--------NDEEYITPVTIGG--TTLNLNFDTGSADLW 231s 2apr AG---VGTVPMTDYG-----NDIEYYGQVTIGTPGKKFNLDFDTGSSDLW 231s 1cms_1 YTG-SLHWVPVTVQQYWQFTVDSVTISGVVVACEG-GCQAILDTGTSKLV 231s . 231s 231s hmgb_chite --------------KRENPDF-KVTEVAK-KGGELWR------------- 231s hmgt_mouse ------------------KDD-SAQGKLK-LVNEAWK------------- 231s hmgl_wheat --------------KQKNPKNKSVAAVGK-AAGERWK------------- 231s hmgl_trybr ------------------SDL-SIVEMSK-AAGAAWK------------- 231s 1cms VPSIYCKSNACKNHQRFDPRKSS---TFQ-NLGKPLSIHYGTGS-MQGIL 231s 4pep VPSVYCSSLACSDHNQFNPDDSS---TFE-ATSQELSITYGTGS-MTGIL 231s 4ape VFSSETTASEVDGQTIYTPSKST---TAKLLSGATWSISYGDGSSSSGDV 231s 3app VFSTELPASQQSGHSVYNPSA-----TGKELSGYTWSISYGDGSSASGNV 231s 2apr IASTLCTN-CGSGQTKYDPNQSS---TYQ-ADGRTWSISYGDGSSASGIL 231s 1cms_1 GPSS---------------------------------------------- 231s 231s 231s hmgb_chite -----------------GLK--DKSEWE---------------------- 231s hmgt_mouse -----------------NLSPEEKQAYI---------------------- 231s hmgl_wheat -----------------SLSESEKAPYV---------------------- 231s hmgl_trybr -----------------ELGPEERKVYE---------------------- 231s 1cms GYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFD--------GILGMAYP 231s 4pep GYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFD--------GILGLAYP 231s 4ape YTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTID--------GLLGLAFS 231s 3app FTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNND--------GLLGLAFS 231s 2apr AKDNVNLGGLLIKGQTIELAKREAASFAS-GPND--------GLLGLGFD 231s 1cms_1 --------DILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYP 231s 231s 231s hmgb_chite ------------------------AKA--AT------AKQNYIRALQEYE 231s hmgt_mouse ------------------------QLA--KD------DRIRYDNEMKSWE 231s hmgl_wheat ------------------------AKA--NK------LKGEYNKAIAAYN 231s hmgl_trybr ------------------------EMA--EK------DKERYKREM---- 231s 1cms SLASEY---SIPV--------F--DNMMNRH----LVAQDLFSVYM-DRN 231s 4pep SISASG---ATPV--------F--DNLWDQG----LVSQDLFSVYL-SSN 231s 4ape TLNTVSPTQQKTF--------F--DNA--KA----SLDSPVFTADL-GYH 231s 3app SINTVQPQSQTTF--------F--DTV--KS----SLAQPLFAVAL-KHQ 231s 2apr TITTVRG--VKTP--------M--DNLISQG----LISRPIFGVYL-GKA 231s 1cms_1 LTPSAY---TS-QDQGFCTSGFQSENHSQKWILGDVFIREYYSVFD-RAN 231s : 231s 231s hmgb_chite R--NG-----------G 231s hmgt_mouse E--QM--A--------E 231s hmgl_wheat K--GE--S--------A 231s hmgl_trybr ----------------- 231s 1cms G--QESMLTLGAIDPSY 231s 4pep DD-SGSVVLLGGIDSSY 231s 4ape ---APGTYNFGFIDTTA 231s 3app ---QPGVYDFGFIDSSK 231s 2apr KNGGGGEYIFGGYDSTK 231s 1cms_1 N--LVGLA--KAI---- 231s 231s 231s 231s 231s CLUSTAL W (1.83) multiple sequence alignment 231s 231s hmgb_chite ad---kpkrplsay------m---------------lwlnsaresi---- 231s hmgt_mouse k-----pkrprsay------n---------------iyvsesfqea---- 231s hmgl_wheat dp--nkpkrapsaf------f---------------vfmgefreef---- 231s hmgl_trybr kkdsnapkramtsf------m---------------ffssdfrskh---- 231s 1cms ge---vasvpltny------ldsqyfgkiylgtppqeftvlfdtgssdfw 231s 4pep -----igdepleny------ldteyfgtigigtpaqdftvifdtgssnlw 231s 4ape stg-satttpids-------lddayitpvqigtpaqtlnldfdtgssdlw 231s 3app aasgvatntpta--------ndeeyitpvtigg--ttlnlnfdtgsadlw 231s 2apr ag---vgtvpmtdyg-----ndieyygqvtigtpgkkfnldfdtgssdlw 231s 1cms_1 ytg-slhwvpvtvqqywqftvdsvtisgvvvaceg-gcqaildtgtsklv 231s . 231s 231s hmgb_chite --------------krenpdf-kvtevak-kggelwr------------- 231s hmgt_mouse ------------------kdd-saqgklk-lvneawk------------- 231s hmgl_wheat --------------kqknpknksvaavgk-aagerwk------------- 231s hmgl_trybr ------------------sdl-sivemsk-aagaawk------------- 231s 1cms vpsiycksnacknhqrfdprkss---tfq-nlgkplsihygtgs-mqgil 231s 4pep vpsvycsslacsdhnqfnpddss---tfe-atsqelsitygtgs-mtgil 231s 4ape vfssettasevdgqtiytpskst---takllsgatwsisygdgssssgdv 231s 3app vfstelpasqqsghsvynpsa-----tgkelsgytwsisygdgssasgnv 231s 2apr iastlctn-cgsgqtkydpnqss---tyq-adgrtwsisygdgssasgil 231s 1cms_1 gpss---------------------------------------------- 231s 231s 231s hmgb_chite -----------------glk--dksewe---------------------- 231s hmgt_mouse -----------------nlspeekqayi---------------------- 231s hmgl_wheat -----------------slsesekapyv---------------------- 231s hmgl_trybr -----------------elgpeerkvye---------------------- 231s 1cms gydtvtvsnivdiqqtvglstqepgdvftyaefd--------gilgmayp 231s 4pep gydtvqvggisdtnqifglsetepgsflyyapfd--------gilglayp 231s 4ape ytdtvsvggltvtgqavesakkvsssftedstid--------gllglafs 231s 3app ftdsvtvggvtahgqavqaaqqisaqfqqdtnnd--------gllglafs 231s 2apr akdnvnlggllikgqtielakreaasfas-gpnd--------gllglgfd 231s 1cms_1 --------dilniqqaigatqnqygefdidcdnlsymptvvfeingkmyp 231s 231s 231s hmgb_chite ------------------------aka--at------akqnyiralqeye 231s hmgt_mouse ------------------------qla--kd------drirydnemkswe 231s hmgl_wheat ------------------------aka--nk------lkgeynkaiaayn 231s hmgl_trybr ------------------------ema--ek------dkerykrem---- 231s 1cms slasey---sipv--------f--dnmmnrh----lvaqdlfsvym-drn 231s 4pep sisasg---atpv--------f--dnlwdqg----lvsqdlfsvyl-ssn 231s 4ape tlntvsptqqktf--------f--dna--ka----sldspvftadl-gyh 231s 3app sintvqpqsqttf--------f--dtv--ks----slaqplfaval-khq 231s 2apr tittvrg--vktp--------m--dnlisqg----lisrpifgvyl-gka 231s 1cms_1 ltpsay---ts-qdqgfctsgfqsenhsqkwilgdvfireyysvfd-ran 231s : 231s 231s hmgb_chite r--ng-----------g 231s hmgt_mouse e--qm--a--------e 231s hmgl_wheat k--ge--s--------a 231s hmgl_trybr ----------------- 231s 1cms g--qesmltlgaidpsy 231s 4pep dd-sgsvvllggidssy 231s 4ape ---apgtynfgfidtta 231s 3app ---qpgvydfgfidssk 231s 2apr knggggeyifggydstk 231s 1cms_1 n--lvgla--kai---- 231s 231s 231s 231s 231s >sp|P08311|CATG_HUMAN Cathepsin G precursor (EC 3.4.21.20) (CG) - Homo sapiens (Human). 231s MQPLLLLLAFLLPTGAEAGEIIGGRESRPHSRPYMAYLQIQSPAGQSRCG 231s GFLVREDFVLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQY 231s NQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRV 231s SMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGD 231s SGGPLLCNNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRTTMRSFKLLDQ 231s METPL 231s >sp|P28293|CATG_MOUSE Cathepsin G precursor (EC 3.4.21.20) (Vimentin-specific protease) (VSP) - Mus musculus (Mouse). 231s MQPLLLLLTFILLQGDEAGKIIGGREARPHSYPYMAFLLIQSPEGLSACG 231s GFLVREDFVLTAAHCLGSSINVTLGAHNIQMRERTQQLITVLRAIRHPDY 231s NPQNIRNDIMLLQLRRRARRSGSVKPVALPQASKKLQPGDLCTVAGWGRV 231s SQSRGTNVLQEVQLRVQMDQMCANRFQFYNSQTQICVGNPRERKSAFRGD 231s SGGPLVCSNVAQGIVSYGSNNGNPPAVFTKIQSFMPWIKRTMRRFAPRYQ 231s RPANSLSQAQT 231s >sp|P80931|MCT1A_SHEEP Mast cell protease 1A precursor (EC 3.4.21.-) (SMCP-1A) - Ovis aries (Sheep). 231s MVLFLLLVALLSPAGEAGKIIGGHEAKPHSRPYMAFLQIKISGKSYRCGG 231s FLVHEDFVLTAAHCLGSSISVTLGAHNIVDRERTQQVIQVRRAIPHPHYN 231s DKTLANDIMLLQLTRKAEMSDAVSPINLPRSLEKVKPGMMCSVAGWGQLG 231s VNMPSADKLQEVNLEVQSEEECIARFKNYIPITQICAGDSTKRKNSFSGD 231s SGGPLVCNGVAQGIVSYGKDDGTTPDVYTRISSFLSWIQRTMRRY 231s >sp|O46683|MCPT3_SHEEP Mast cell protease 3 precursor (EC 3.4.21.-) (SMCP-3) - Ovis aries (Sheep). 231s MVLFLLLVALLSPAGEAGKIIGGHEAKPHSRPYMAFLQFKISGKSYICGG 231s FLVREDFVLTAAHCLGSSINVTLGAHTITDQERTQQVIQVRRAIPHPDYN 231s DETCANDIMLLQLTRKAEMTDAVSLINLPRSLEKVKPGMMCSVAGWGQLG 231s VNMPSADKLQEVDLEVQREEKCIARFKDYIPVTQICAGDPSKRKDSFLGD 231s SGGPLVCDGVAQGIVSYGKDDGTTPNVYTRISSFLSWIQRTMRQYKNQGS 231s A 231s >sp|P80219|DDN1_BOVIN Duodenase-1 (EC 3.4.21.-) (Duodenase I) (Duodenum serine protease) - Bos taurus (Bovine). 231s IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGSIN 231s VTLGAHNIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADIT 231s DKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEE 231s KCIARFKNYIPFTQICAGDPSKRRNSFSGDSGGPLVCNGVAQGIVSYGKN 231s DGTTPDVYTRISSFLPWIKRVMYLFK 231s >sp|P20718|GRAH_HUMAN Granzyme H precursor (EC 3.4.21.-) (Cytotoxic T-lymphocyte proteinase) (Cathepsin G-like 2) (CTSGL2) (CCP-X) (Cytotoxic serine protease C) (CSP-C) - Homo sapiens (Human). 231s MQPFLLLLAFLLTPGAGTEEIIGGHEAKPHSRPYMAFVQFLQEKSRKRCG 231s GILVRKDFVLTAAHCQGSSINVTLGAHNIKEQERTQQFIPVKRPIPHPAY 231s NPKNFSNDIMLLQLERKAKWTTAVRPLRLPSSKAQVKPGQLCSVAGWGYV 231s SMSTLATTLQEVLLTVQKDCQCERLFHGNYSRATEICVGDPKKTQTGFKG 231s DSGGPLVCKDVAQGILSYGNKKGTPPGVYIKVSHFLPWIKRTMKRL 231s >sp|P10144|GRAB_HUMAN Granzyme B precursor (EC 3.4.21.79) (T-cell serine protease 1-3E) (Cytotoxic T-lymphocyte proteinase 2) (Lymphocyte protease) (SECT) (Granzyme-2) (Cathepsin G-like 1) (CTSGL1) (CTLA-1) (Fragmentin-2) (Human lymphocyte protein) (HLP) 231s MQPILLLLAFLLLPRADAGEIIGGHEAKPHSRPYMAYLMIWDQKSLKRCG 231s GFLIQDDFVLTAAHCWGSSINVTLGAHNIKEQEPTQQFIPVKRPIPHPAY 231s NPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQT 231s APLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFK 231s GDSGGPLVCNKVAQGIVSYGRNNGMPPRACTKVSSFVHWIKKTMKRY 231s >sp|P04187|GRAB_MOUSE Granzyme B(G,H) precursor (EC 3.4.21.79) (Cytotoxic cell protease 1) (CCP1) (CTLA-1) (Fragmentin-2) - Mus musculus (Mouse). 231s MKILLLLLTLSLASRTKAGEIIGGHEVKPHSRPYMALLSIKDQQPEAICG 231s GFLIREDFVLTAAHCEGSIINVTLGAHNIKEQEKTQQVIPMVKCIPHPDY 231s NPKTFSNDIMLLKLKSKAKRTRAVRPLNLPRRNVNVKPGDVCYVAGWGRM 231s APMGKYSNTLQEVELTVQKDRECESYFKNRYNKTNQICAGDPKTKRASFR 231s GDSGGPLVCKKVAAGIVSYGYKDGSPPRAFTKVSSFLSWIKKTMKSS 231s >sp|P18291|NKP1_RAT Natural killer cell protease 1 precursor (EC 3.4.21.-) (RNKP-1) (Fragmentin) (Granzyme B) - Rattus norvegicus (Rat). 231s MKLLLLLLSFSLAPKTEAGEIIGGHEAKPHSRPYMAYLQIMDEYSGSKKC 231s GGFLIREDFVLTAAHCSGSKINVTLGAHNIKEQEKMQQIIPVVKIIPHPA 231s YNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGK 231s LGPMGKYSDTLQEVELTVQEDQKCESYLKNYFDKANEICAGDPKIKRASF 231s RGDSGGPLVCKKVAAGIVSYGQNDGSTPRAFTKVSTFLSWIKKTMKKS 231s >sp|Q06605|GRZ1_RAT Granzyme-like protein 1 precursor (EC 3.4.21.-) (GLP-1) (Granzyme-like protein I) (GLP I) - Rattus norvegicus (Rat). 231s MNLLLLLLTVSLAPTTEAAEIIGGHEADPHSRPYMAYLQYKNEDSRDTIC 231s GGFLIREDFVLTAAHCSGSKINVTLGAHNIKEQEKTQQVIPVVKIIPHPA 231s YNAKTISNDIMLLKLKSKAKRTRAVKTLSLPRSNFKVKPGDVCYVAGWGK 231s LGPMGKFPDKLQEVELTVQEDQECETYLKNAYDKANQICAGDPKIKCASF 231s QGDSGGPLVCKKVAAGIVSYGRKDGSTPRAFTKVSTFLSWIEETMKKS 231s >sp|P21812|MCPT4_MOUSE Mast cell protease 4 precursor (EC 3.4.21.-) (MMCP-4) (Serosal mast cell protease) (MSMCP) (Myonase) - Mus musculus (Mouse). 231s MQALLFLMALLLPSGAGAEEIIGGVESRPHSRPYMAHLEITTERGFTATC 231s GGFLITRQFVMTAAHCSGREITVTLGAHDVSKTESTQQKIKVEKQIVHPK 231s YNFYSNLHDIMLLKLQKKAKETPSVNVIPLPRPSDFIKPGKMCRAAGWGR 231s TGVTEPTSDTLREVKLRIMDKEACKNYWHYDYNLQVCVGSPRKKRSAYKG 231s DSGGPLLCAGVAHGIVSYGRGDAKPPAVFTRISSYVPWINRVIKGE 231s >sp|P23946|MCPT1_HUMAN Chymase precursor (EC 3.4.21.39) (Mast cell protease I) - Homo sapiens (Human). 231s MLLLPLPLLLFLLCSRAEAGEIIGGTECKPHSRPYMAYLEIVTSNGPSKF 231s CGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHP 231s KYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWG 231s RTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFK 231s GDSGGPLLCAGVAQGIVSYGRSDAKPPAVFTRISHYRPWINQILQAN 231s >sp|P43430|MCPT8_MOUSE Mast cell protease 8 precursor (EC 3.4.21.-) (MMCP-8) - Mus musculus (Mouse). 231s MFLLLVLLVAALPVNAEGGEIIWGTESKPHSRPYMAYIRFNDSKSVYRCG 231s GFLVARDIVMTAAHCNGKVINVTLGIHNLKKKKNTQLIPVSEAIPHESFD 231s NETLVNDIMLLKLERKAQLNSAVDTIALPKSKDWVKPGQVCTVAGWGKLA 231s NCTLSDTLQEVNLEVQKGQKCRSMSQTYNDSIQLCVGNPSENKATGKGDS 231s GGPFVCNGVVQGIVSCRLCTGTLPRVFTRISSFMPWIRKTMKLLQQP 231s >sp|P52195|MCPT1_PAPHA Chymase precursor (EC 3.4.21.39) (Mast cell protease I) - Papio hamadryas (Hamadryas baboon). 231s MLLLPLPLLLLFLCSRAEAGEIIGGTECKPHSRPYMAYLEIVTSNGPSKS 231s CGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEKEDTWQELEVIKQFRHP 231s KYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWG 231s RTGVLKPGSDTLQEVKLRLMDPQACSHFRYFDHNLQLCVGNPRKTKSAFK 231s GDSGGPLLCAGVAQGIVSYGRLDAKPPAVFTRISHYRPWINKILQAN 231s >sp|P56435|MCPT1_MACFA Chymase precursor (EC 3.4.21.39) (Mast cell protease I) - Macaca fascicularis (Crab eating macaque) (Cynomolgus monkey). 231s MLLLPLPLLLFFLCSRAEAGEIIGGTECKPHSRPYMAYLEIVTSNGPSKS 231s CGGFLIRRNFVLTAVHCAGRSITVTLGAHNITEKEDTWQKLEVIKQFRHP 231s KYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWG 231s RTGVLKPGSDTLQEVKLRLMDPQACSHFRYFDHNLQLCVGNPRKTKSAFK 231s GDSGGPLLCAGVAQGIVSYGRLDAKPPAVFTRISHYRPWINKILQAN 231s >sp|Q06606|GRZ2_RAT Granzyme-like protein 2 precursor (EC 3.4.21.-) (GLP-2) (Granzyme-like protein II) (GLP II) (Mast cell protease X) (rMCP-X) (rMCP-10) - Rattus norvegicus (Rat). 231s MFLFLFFLVAILPVNTEGGEIIWGTESKPHSRPYMAFIKFYDSNSEPHHC 231s GGFLVAKDIVMTAAHCNGRNIKVTLGAHNIKKQENTQVISVVKAKPHENY 231s DRDSHFNDIMLLKLERKAQLNGVVKTIALPRSQDWVKPGQVCTVAGWGRL 231s ANCTSSNTLQEVNLEVQKGQKCQDMSEDYNDSIQLCVGNPSEGKATGKGD 231s SGGPFVCDGVAQGIVSYRLCTGTLPRVFTRISSFIPWIQKTMKVLQQS 231s >sp|P13366|GRAG_MOUSE Granzyme G precursor (EC 3.4.21.-) (CTL serine protease 1) (MCSP-1) - Mus musculus (Mouse). 231s MPPILILLTLLLPLRAGAEEIIGGHEVKPHSRPYMAFIKSVDIEGKKKYC 231s GGFLVQDDFVLTAAHCRNRSMTVTLGAHNIKAKEETQQIIPVAKAIPHPA 231s FNRKHGTNDIMLLKLESKAKRTKAVRPLKLPRPNARVKPGDVCSVAGWGK 231s TSINATKASARLREAQLIIQEDEECKKLWYTYSKTTQICAGDPKKVQAPY 231s EGESGGPLVCDNLAYGVVSYGINRTITPGVFTKVVHFLPWISTNMKLL 231s >sp|P79204|MCPT2_SHEEP Mast cell protease 2 precursor (EC 3.4.21.-) (SMCP-2) - Ovis aries (Sheep). 231s MHRPPLPLVLLLLCCRAQAGEIIGGTESKPHSRPYMAYLEIVTSQEKQVA 231s CGGFLIRRDFVLTAAHCAGRSVTVTLGAHNIQKKEDTWQRLEVIKQFPYP 231s KYEPVGVHDIMLLKLKEKANLTLAVGTLPLPPHVTFIRPGRMCQVAGWGR 231s TGVKEPASSTLQEVKLRLMEPRACRHFRAFDHNLQLCVGNPQSTKSAFKG 231s DSGGPLLCAGVAQGIVSYGLSSAKPPAVFTRISPYRPWIDEVLKEN 231s >sp|P11034|MCPT1_MOUSE Mast cell protease 1 precursor (EC 3.4.21.-) (MMCP-1) - Mus musculus (Mouse). 231s MQALLFLMALLLPSGAGAEEIIGGVEARPHSRPYMAHLKIITDRGSEDRC 231s GGFLIAPQFVLTAAHCKGREITVTLGAHDVSKSESTQQRIKVEKQIIHKN 231s YNVSFNLYDIMLLKLEEKAELTPTVDVIPLPGPSDFIDPGKMCWTAGWGK 231s TGEKEPTSETLREVELRIMDKEACKMYKHYDYNFQVCVGSSTKLKTAYMG 231s DSGGPLLCAGVAHGIVSYGDSHGKPPAVFTRISAYVPWIKTVINGK 231s >sp|P21842|MCPT1_CANFA Chymase precursor (EC 3.4.21.39) (Mast cell protease I) - Canis familiaris (Dog). 231s MHCLPLTLLLLLLCSRAEAEEIIGGTESKPHSRPYMAHLEILTLRNHLAS 231s CGGFLIRRNFVLTAAHCAGRFIMVTLGAHNIQKKEDTWQKLEVIKQFPHP 231s KYDDLTLRHDIMLLKLKEKANLTLAVGTLPLSPQFNFVPPGRMCRVAGWG 231s KRQVNGSGSDTLQEVKLRLMDPQACRHYMAFDHNLQLCVGNPRKTKSAFK 231s GDSGGPLLCAGVAQGIVSYGQNDAKPPAVFTRISHYRPWINKVLKQNKA 231s >sp|P08882|GRAC_MOUSE Granzyme C precursor (EC 3.4.21.-) (Cytotoxic cell protease 2) (CCP2) (B10) - Mus musculus (Mouse). 231s MPPVLILLTLLLPLRAGAEEIIGGNEISPHSRPYMAYYEFLKVGGKKMFC 231s GGFLVRDKFVLTAAHCKGSSMTVTLGAHNIKAKEETQQIIPVAKAIPHPD 231s YNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGK 231s VTPDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICVGDSKIKGASF 231s EEDSGGPLVCKRAAAGIVSYGQTDGSAPQVFTRVLSFVSWIKKTMKHS 231s >sp|P97594|MCPT8_RAT Mast cell protease 8 precursor (EC 3.4.21.-) (Mast cell protease VIII) (rMCP-VIII) (rMCP-8) - Rattus norvegicus (Rat). 231s MFLFLFFLVAILPVNTEGGEIIWGTESKPHSRPYMASLMFYYGNSYRHYC 231s GGFLVAKDIVMTAAHCNGSNIKVTLGAHNIKKQEKTQVIAVVKAKPHENY 231s DRHSRFNDIMLLKLERKAQLNGAVKTIALPRSQDWVKPGQVCTVAGWGCL 231s ANCSLSNTLQEVNLEVQEGQKCEDMSRNYNDSIQLCVGNPSEGKATGKGD 231s SGGPFVCDGVAQGIVSYRLCTGTLPRVFTRISSFIPWIQKTMKLLQQS 231s >sp|P09650|MCPT1_RAT Mast cell protease 1 precursor (EC 3.4.21.39) (Mast cell protease I) (RMCP-I) (RMCP-1) (Chymase) (Chymotrysin-like protease) (CLIP protein) - Rattus norvegicus (Rat). 231s MQALLFLMALLLPSGAGAEEIIGGVESRPHSRPYMAHLEITTERGYKATC 231s GGFLVTRQFVMTAAHCKGRETTVTLGVHDVSKTESTQQKIKVEKQIVHPN 231s YNFYSNLHDIMLLKLQKKAKVTPAVDVIPLPQPSDFLKPGKMCRAAGWGQ 231s TGVTKPTSNTLREVKQRIMDKEACKNYFHYNYNFQVCVGSPRKIRSAYKG 231s DSGGPLVCAGVAHGIVSYGRGDAKPPAVFTRISPYVPWINKVIKGKDLTS 231s LSLHESESPS 231s >sp|P50340|MCPT1_MERUN Mast cell protease 1 precursor (EC 3.4.21.-) - Meriones unguiculatus (Mongolian jird) (Mongolian gerbil). 231s MQALLFLLALLWPPEAGAEEIIGGVESKPHSRPYMAHLTITTKQGFTASC 231s GGFLINPQFVMTAAHCKGREITVTLGAHDVSKKESTQQKIKVAKQIAHPS 231s YSFYSNLHDIMLLKLQKKAKVTASVDVISLPSPSDFINPGKVCRAAGWGR 231s TGVTEPTSDKLREVKLRIMTKAACKNYEHYDYNFQVCVGSPSKIRSAYKG 231s DSGGPLVCAGVAHGIVSYGRIDAKPPAVFTRISPYVPWINLVIRGK 231s >sp|P08883|GRAF_MOUSE Granzyme F precursor (EC 3.4.21.-) (Cytotoxic cell protease 4) (CCP4) (CTL serine protease 3) (C134) (Cytotoxic serine protease 3) (MCSP3) - Mus musculus (Mouse). 231s MPPILILLTLLLPLRAGAEEIIGGHEVKPHSRPYMARVRFVKDNGKRHSC 231s GGFLVQDYFVLTAAHCTGSSMRVILGAHNIRAKEETQQIIPVAKAIPHPA 231s YDDKDNTSDIMLLKLESKAKRTKAVRPLKLPRPNARVKPGHVCSVAGWGR 231s TSINATQRSSCLREAQLIIQKDKECKKYFYKYFKTMQICAGDPKKIQSTY 231s SGDSGGPLVCNNKAYGVLTYGLNRTIGPGVFTKVVHYLPWISRNMKLL 231s >sp|P08884|GRAE_MOUSE Granzyme E precursor (EC 3.4.21.-) (Cytotoxic cell protease 3) (CCP3) (CTL serine protease 2) (D12) (Cytotoxic serine protease 2) (MCSP2) - Mus musculus (Mouse). 231s MPPVLILLTLLLPLGAGAEEIIGGHVVKPHSRPYMAFVKSVDIEGNRRYC 231s GGFLVQDDFVLTAAHCRNRTMTVTLGAHNIKAKEETQQIIPVAKAIPHPD 231s YNATAFFSDIMLLKLESKAKRTKAVRPLKLPRPNARVKPGDVCSVAGWGS 231s RSINDTKASARLREAQLVIQEDEECKKRFRHYTETTEICAGDLKKIKTPF 231s KGDSGGPLVCDNKAYGLLAYAKNRTISSGVFTKIVHFLPWISRNMKLL 231s >sp|P00770|MCPT2_RAT Mast cell protease 2 precursor (EC 3.4.21.-) (Mast cell protease II) (rMCP-II) (rMCP-2) (Group-specific protease) - Rattus norvegicus (Rat). 231s MQALLFLMALLLPSGAGAEEIIGGVESIPHSRPYMAHLDIVTEKGLRVIC 231s GGFLISRQFVLTAAHCKGREITVILGAHDVRKRESTQQKIKVEKQIIHES 231s YNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGK 231s TGVRDPTSYTLREVELRIMDEKACVDYRYYEYKFQVCVGSPTTLRAAFMG 231s DSGGPLLCAGVAHGIVSYGHPDAKPPAIFTRVSTYVPWINAVINTSS 231s >sp|P11033|GRAD_MOUSE Granzyme D precursor (EC 3.4.21.-) - Mus musculus (Mouse). 231s MPPILILLTLLLPLRAGAEEIIGGHVVKPHSRPYMAFVMSVDIKGNRIYC 231s GGFLIQDDFVLTAAHCKNSSMTVTLGAHNITAKEETQQIIPVAKDIPHPD 231s YNATIFYSDIMLLKLESKAKRTKAVRPLKLPRSNARVKPGDVCSVAGWGS 231s RSINDTKASARLREVQLVIQEDEECKKRFRYYTETTEICAGDLKKIKTPF 231s KGDSGGPLVCHNQAYGLFAYAKNGTISSGIFTKVVHFLPWISWNMKLL 231s >sp|P97592|MCPT4_RAT Mast cell protease 4 precursor (EC 3.4.21.-) (Mast cell protease IV) (rMCP-IV) (rMCP-4) - Rattus norvegicus (Rat). 231s MKALLFLMALLLPSGAGAEEIIGGVESIPHSRPYMALLKIVTEEGHVTFC 231s GGFLISLQFVLTAAHCHGREITVTLGAHDMSKRESTQQKIKVVKQIFPLK 231s YNLFSNFRDIMLLKLEQKAVLTPSVNVIPLPQSSDIIKPGTMCLAAGWGQ 231s TGVKEPNSNTLREVMLRIMEMKACKDYRHYDNRFQICVGIPQMLKLAYKG 231s DSGGPLVCAGVAHGIVSHGPGRGIPPIIFTRISSYVSWINRVIRGN 231s >sp|O35164|MCPT9_MOUSE Mast cell protease 9 precursor (EC 3.4.21.-) (MMCP-9) - Mus musculus (Mouse). 231s MQALLFLMALLLPSRAGAEEIIGGVESEPHSRPYMAYVNTFSKKGYVAIC 231s GGFLIAPQFVMTAAHCSGRRMTVTLGAHNVRKRECTQQKIKVEKYILPPN 231s YNVSSKFNDIVLLKLKKQANLTSAVDVVPLPGPSDFAKPGTMCWAAGWGR 231s TGVKKSISHTLREVELKIVGEKACKIFRHYKDSLQICVGSSTKVASVYMG 231s DSGGPLLCAGVAHGIVSSGRGNAKPPAIFTRISPHVPWINRVIKGE 231s >sp|Q00356|MCPTX_MOUSE Mast cell protease-like protein precursor (EC 3.4.21.-) - Mus musculus (Mouse). 231s MQALLFLMALLLPSGAGAEEIIGGVESEPHSRPYMAYVNTFRRKGYVAIC 231s GGFLITPQFVMTAAHCRGRRMTVTLGAHNVRKRECTQQKIKVEKYILPPN 231s YNVSSKFNDIVLLKLKKQANLTSAVDVVPLPGPSDFAKPGTMCWAAGWGR 231s TGVKKIISHTLREVELKIVGEKACKIFRHYKDSLQICVGSSTKVASVYMG 231s DSGGPLLCAGVAHGIVSSGRGNAKPPAIFTRISPHVPWINRVIKGK 231s >sp|P50339|MCPT3_RAT Mast cell protease 3 precursor (EC 3.4.21.-) (Mast cell protease III) (rMCP-III) (rMCP-3) (Chymase 1) - Rattus norvegicus (Rat). 231s MNLHALCLLLLLLGSSTKAGEIIGGTECIPHSRPYMAYLEIVTSDNYLSA 231s CSGFLIRRNFVLTAAHCAGRSITVLLGAHNKTYKEDTWQKLEVEKQFIHP 231s NYDKRLVLHDIMLLKLKEKAKLTLGVGTLPLSANFNFIPPGRMCRAVGWG 231s RTNVNEPASDTLQEVKMRLQEPQSCKHFTSFQHKSQLCVGNPKKMQNVYK 231s GDSGGPLLCAGIAQGIASYVHPNAKPPAVFTRISHYRPWINKILREN 231s >sp|P21844|MCPT5_MOUSE Mast cell protease 5 precursor (EC 3.4.21.-) (MMCP-5) (Mast cell chymase 1) - Mus musculus (Mouse). 231s MHLLTLHLLLLLLGSSTKAGEIIGGTECIPHSRPYMAYLEIVTSENYLSA 231s CSGFLIRRNFVLTAAHCAGRSITVLLGAHNKTSKEDTWQKLEVEKQFLHP 231s KYDENLVVHDIMLLKLKEKAKLTLGVGTLPLSANFNFIPPGRMCRAVGWG 231s RTNVNEPASDTLQEVKMRLQEPQACKHFTSFRHNSQLCVGNPKKMQNVYK 231s GDSGGPLLCAGIAQGIASYVHRNAKPPAVFTRISHYRPWINKILREN 231s >sp|P50341|MCPT2_MERUN Mast cell protease 2 precursor (EC 3.4.21.-) - Meriones unguiculatus (Mongolian jird) (Mongolian gerbil). 231s MHLLALHLLLFLLGSRAKAGEIIGGTECKPHSRPYMAYLEIATSKNYLST 231s CSGFLIRRNFVLTAAHCSGRSITVLLGAHNKTAKEDTWQKIEVEKQFPHP 231s KYDDYSVLHDIMLLKLKEKAKLTLAVGTLPLPAKFSFIPPGRVCRAVGWG 231s KTNVNEPTSDTLQEVKMRLLEAEGCKHFTNFYHSSQLCVGNPKKMQNVYK 231s GDSGGPLLCAGIAQGIASYVRRNARPPAVFTRISHYRPWINKILREN 231s >sp|P15119|MCPT2_MOUSE Mast cell protease 2 precursor (EC 3.4.21.-) (MMCP-2) - Mus musculus (Mouse). 231s MQALLFLMALLLPSGAGAEEIIGGVEAKPHSRPYMAYLKFTTKNGSKERC 231s GGFLIAPQFVMTAAHCNGSEISVILGAHNINKNEPTQQIIKTEKTFVHPK 231s FQYLSGFYDIMLLKLQKKAELNSDVDVISLPSSSDFIKPGKMCWTAGWGK 231s TGKNNPLSVTLREVELRIMDQEACKDHSDYDYQLQVCAGSPTTSKSIGQG 231s DSGGPLVCDSVAHGIASSYEAKAPAVFTRISYYLPWIYKVLKSK 231s >sp|P35033|TRY3_SALSA Trypsin-3 precursor (EC 3.4.21.4) (Trypsin III) (Fragment) - Salmo salar (Atlantic salmon). 231s FAVAFAAPIDDEDDKIVGGYECRKNSASYQASLQSGYHFCGGSLISSTWV 231s VSAAHCYKSRIQVRLGEHNIAVNEGTEQFIDSVKVIMHPSYNSRNLDNDI 231s MLIKLSKPASLNSYVSTVALPSSCASSGTRCLVSGWGNLSGSSSNYPDTL 231s RCLDLPILSSSSCNSAYPGQITSNMFCAGFMEGGKDSCQGDSGGPVVCNG 231s QLQGVVSWGYGCAQRNKPGVYTKVCNYRSWISSTMSSN 231s >sp|P70059|TRY2_XENLA Trypsin precursor (EC 3.4.21.4) - Xenopus laevis (African clawed frog). 231s MKFLVILVLLGAAVAFEDDDKIVGGFTCAKNAVPYQVSLNAGYHFCGGSL 231s INSQWVVSAAHCYKSRIQVRLGEHNIALNEGTEQFIDSQKVIKHPNYNSR 231s NLDNDIMLIKLSTTARLSANIQSVPLPSACASAGTNCLISGWGNTLSSGT 231s NYPDLLQCLNAPILTDSQCSNSYPGEITKNMFCAGFLAGGKDSCQGDSGG 231s PVVCNGQLQGVVSWGYGCAQRNYPGVYTKVCNFVTWIQSTISSN 231s >sp|P35032|TRY2_SALSA Trypsin-2 precursor (EC 3.4.21.4) (Trypsin II) (Fragment) - Salmo salar (Atlantic salmon). 231s AAFATEDDKIVGGYECKAYSQPHQVSLNSGYHFCGGSLVNENWVVSAAHC 231s YQSRVEVRLGEHNIQVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLS 231s KPATLNTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTADKNKLQCLNIPI 231s LSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGELQGVVS 231s WGYGCAEPGNPGVYAKVCIFNDWLTSTMATY 231s >sp|P00762|TRY1_RAT Anionic trypsin-1 precursor (EC 3.4.21.4) (Anionic trypsin I) (Pretrypsinogen I) - Rattus norvegicus (Rat). 231s MSALLILALVGAAVAFPLEDDDKIVGGYTCPEHSVPYQVSLNSGYHFCGG 231s SLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGDEQFINAAKIIKHPNYS 231s SWTLNNDIMLIKLSSPVKLNARVAPVALPSACAPAGTQCLISGWGNTLSN 231s GVNNPDLLQCVDAPVLSQADCEAAYPGEITSSMICVGFLEGGKDSCQGDS 231s GGPVVCNGQLQGIVSWGYGCALPDNPGVYTKVCNFVGWIQDTIAAN 231s >sp|P35031|TRY1_SALSA Trypsin-1 precursor (EC 3.4.21.4) (Trypsin I) - Salmo salar (Atlantic salmon). 231s MISLVFVLLIGAAFATEDDKIVGGYECKAYSQTHQVSLNSGYHFCGGSLV 231s NENWVVSAAHCYKSRVEVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYN 231s IDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTAD 231s SNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV 231s VCNGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMASY 231s >sp|P06872|TRY2_CANFA Anionic trypsin precursor (EC 3.4.21.4) - Canis familiaris (Dog). 231s MNPLLILAFLGAAVATPTDDDDKIVGGYTCEENSVPYQVSLNAGYHFCGG 231s SLISDQWVVSAAHCYKSRIQVRLGEYNIDVLEGNEQFINSAKVIRHPNYN 231s SWILDNDIMLIKLSSPAVLNARVATISLPRACAAPGTQCLISGWGNTLSS 231s GTNYPELLQCLDAPILTQAQCEASYPGQITENMICAGFLEGGKDSCQGDS 231s GGPVVCNGELQGIVSWGYGCAQKNKPGVYTKVCNFVDWIQSTIAANS 231s >sp|P24158|PRTN3_HUMAN Myeloblastin precursor (EC 3.4.21.76) (Leukocyte proteinase 3) (PR-3) (PR3) (AGP7) (Wegener's autoantigen) (P29) (C-ANCA antigen) (Neutrophil proteinase 4) (NP-4) - Homo sapiens (Human). 231s MAHRPPSPALASVLLALLLSGAARAAEIVGGHEAQPHSRPYMASLQMRGN 231s PGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAHNVRTQEPTQQHF 231s SVAQVFLNNYDAENKLNDVLLIQLSSPANLSASVATVQLPQQDQPVPHGT 231s QCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHNICTFVPRRKAGICF 231s GDSGGPLICDGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLRRV 231s EAKGRP 231s >sp|P07477|TRY1_HUMAN Trypsin-1 precursor (EC 3.4.21.4) (Trypsin I) (Cationic trypsinogen) - Homo sapiens (Human). 231s MNPLLILTFVAAALAAPFDDDDKIVGGYNCEENSVPYQVSLNSGYHFCGG 231s SLINEQWVVSAGHCYKSRIQVRLGEHNIEVLEGNEQFINAAKIIRHPQYD 231s RKTLNNDIMLIKLSSRAVINARVSTISLPTAPPATGTKCLISGWGNTASS 231s GADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDS 231s GGPVVCNGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAANS 231s >sp|P16049|TRY1_GADMO Trypsin-1 precursor (EC 3.4.21.4) (Trypsin I) - Gadus morhua (Atlantic cod). 231s MKSLIFVLLLGAVFAEEDKIVGGYECTKHSQAHQVSLNSGYHFCGGSLVS 231s KDWVVSAAHCYKSVLRVRLGEHHIRVNEGTEQYISSSSVIRHPNYSSYNI 231s NNDIMLIKLTKPATLNQYVHAVALPTECAADATMCTVSGWGNTMSSVADG 231s DKLQCLSLPILSHADCANSYPGMITQSMFCAGYLEGGKDSCQGDSGGPVV 231s CNGVLQGVVSWGYGCAERDHPGVYAKVCVLSGWVRDTMANY 231s >sp|Q9UKR3|KLK13_HUMAN Kallikrein-13 precursor (EC 3.4.21.-) (Kallikrein-like protein 4) (KLK-L4) - Homo sapiens (Human). 231s MWPLALVIASLTLALSGGVSQESSKVLNTNGTSGFLPGGYTCFPHSQPWQ 231s AALLVQGRLLCGGVLVHPKWVLTAAHCLKEGLKVYLGKHALGRVEAGEQV 231s REVVHSIPHPEYRRSPTHLNHDHDIMLLELQSPVQLTGYIQTLPLSHNNR 231s LTPGTTCRVSGWGTTTSPQVNYPKTLQCANIQLRSDEECRQVYPGKITDN 231s MLCAGTKEGGKDSCEGDSGGPLVCNRTLYGIVSWGDFPCGQPDRPGVYTR 231s VSRYVLWIRETIRKYETQQQKWLKGPQ 231s >sp|Q91041|TRYX_GADMO Trypsin-10 precursor (EC 3.4.21.4) (Trypsin X) - Gadus morhua (Atlantic cod). 231s MKSLIFVLLLGAVFAEEDKIVGGYECTRHSQAHQVSLNSGYHFCGGSLVS 231s KDWVVSAAHCYKSVLRVRLGEHHIRVNEGTEQFISSSSVIRHPNYSSYNI 231s DNDIMLIKLTEPATLNQYVHAVALPTECAADATMCTVSGWGNTMSSVDDG 231s DKLQCLNLPILSHADCANSYPGMITQSMFCAGYLEGGKDSCQGDSGGPVV 231s CNGVLQGVVSWGYGCAERDNPGVYAKVCVLSGWVRDTMASY 231s >sp|Q90627|TRY1_CHICK Trypsin I-P1 precursor (EC 3.4.21.4) - Gallus gallus (Chicken). 231s MKFLVLVAFVGVTVAFPISDEDDDKIVGGYSCARSAAPYQVSLNSGYHFC 231s GGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSG 231s YNANTLNNDIMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTL 231s SSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQG 231s DSGGPVVCNGQLQGIVSWGIGCAQKGYPGVYTKVCNYVSWIKTTMSSN 231s >sp|P51779|CFAD_PIG Complement factor D precursor (EC 3.4.21.46) (C3 convertase activator) (Properdin factor D) (Adipsin) - Sus scrofa (Pig). 231s MADRSGHLAALILLGAAVCVAQPRGRILGGQEAKSHERPYMASVQVNGKH 231s VCGGFLVSEQWVLSAAHCLEDVAEGKLQVLLGAHSLSQPEPSKRLYDVLR 231s AVPHPDSQPDTIDHDLLLLKLSEKAELGPAVQPLAWQREDHEVPAGTLCD 231s VAGWGVVSHTGRRPDRLQHLLLPVLDRTTCNLRTYHDGTITERMMCAESN 231s RRDSCKGDSGGPLVCGGVAEGVVTSGSRVCGNRKKPGIYTRLASYVAWID 231s GVMADSAAA 231s >sp|P00746|CFAD_HUMAN Complement factor D precursor (EC 3.4.21.46) (C3 convertase activator) (Properdin factor D) (Adipsin) - Homo sapiens (Human). 231s MHSSVYFAVLVLLGAAACAARPRGRILGGREAEAHARPYMASVQLNGAHL 231s CGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRA 231s VPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDV 231s AGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNR 231s RDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDS 231s VLA 231s >sp|Q9H2R5|KLK15_HUMAN Kallikrein-15 precursor (EC 3.4.21.-) (ACO protease) - Homo sapiens (Human). 231s MWLLLTLSFLLASTAAQDGDKLLEGDECAPHSQPWQVALYERGRFNCGAS 231s LISPHWVLSAAHCQSRFMRVRLGEHNLRKRDGPEQLRTTSRVIPHPRYEA 231s RSHRNDIMLLRLVQPARLNPQVRPAVLPTRCPHPGEACVVSGWGLVSHNE 231s PGTAGSPRSQVSLPDTLHCANISIISDTSCDKSYPGRLTNTMVCAGAEGR 231s GAESCEGDSGGPLVCGGILQGIVSWGDVPCDNTTKPGVYTKVCHYLEWIR 231s ETMKRN 231s >sp|P00761|TRYP_PIG Trypsin precursor (EC 3.4.21.4) - Sus scrofa (Pig). 231s FPTDDDDKIVGGYTCAANSIPYQVSLNSGSHFCGGSLINSQWVVSAAHCY 231s KSRIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSS 231s PATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPV 231s LSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPVVCNGQLQGIVS 231s WGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN 231s >sp|P08426|TRY3_RAT Cationic trypsin-3 precursor (EC 3.4.21.4) (Cationic trypsin III) (Pretrypsinogen III) - Rattus norvegicus (Rat). 231s MKALIFLAFLGAAVALPLDDDDDKIVGGYTCQKNSLPYQVSLNAGYHFCG 231s GSLINSQWVVSAAHCYKSRIQVRLGEHNIDVVEGGEQFIDAAKIIRHPSY 231s NANTFDNDIMLIKLNSPATLNSRVSTVSLPRSCGSSGTKCLVSGWGNTLS 231s SGTNYPSLLQCLDAPVLSDSSCKSSYPGKITSNMFCLGFLEGGKDSCQGD 231s SGGPVVCNGQLQGVVSWGYGCAQKGKPGVYTKVCNYVNWIQQTVAAN 231s >sp|P12544|GRAA_HUMAN Granzyme A precursor (EC 3.4.21.78) (Cytotoxic T-lymphocyte proteinase 1) (Hanukkah factor) (H factor) (HF) (Granzyme-1) (CTL tryptase) (Fragmentin-1) - Homo sapiens (Human). 231s MRNSYRFLASSLSVVVSLLLIPEDVCEKIIGGNEVTPHSRPYMVLLSLDR 231s KTICAGALIAKDWVLTAAHCNLNKRSQVILGAHSITREEPTKQIMLVKKE 231s FPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQV 231s AGWGRTHNSASWSDTLREVNITIIDRKVCNDRNHYNFNPVIGMNMVCAGS 231s LRGGRDSCNGDSGSPLLCEGVFRGVTSFGLENKCGDPRGPGVYILLSKKH 231s LNWIIMTIKGAV 231s >sp|Q90628|TRY2_CHICK Trypsin I-P38 precursor (EC 3.4.21.4) - Gallus gallus (Chicken). 231s MKFLVLVAFLGVAVAFPISDEDDDKIVGGYSCARSAAPYQVSLNSGYHFC 231s GGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSG 231s YNANTLNNDIMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTL 231s SSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQG 231s DSGGPVVCNGQLQGFVSWGIGCAQKGYPGVYTKVCNYVSWIKTTMSSN 231s >sp|Q9P0G3|KLK14_HUMAN Kallikrein-14 precursor (EC 3.4.21.-) (Kallikrein-like protein 6) (KLK-L6) - Homo sapiens (Human). 231s MFLLLTALQVLAIAMTQSQEDENKIIGGHTCTRSSQPWQAALLAGPRRRF 231s LCGGALLSGQWVITAAHCGRPILQVALGKHNLRRWEATQQVLRVVRQVTH 231s PNYNSRTHDNDLMLLQLQQPARIGRAVRPIEVTQACASPGTSCRVSGWGT 231s ISSPIARYPASLQCVNINISPDEVCQKAYPRTITPGMVCAGVPQGGKDSC 231s QGDSGGPLVCRGQLQGLVSWGMERCALPGYPGVYTNLCKYRSWIEETMRD 231s K 231s >sp|P00763|TRY2_RAT Anionic trypsin-2 precursor (EC 3.4.21.4) (Anionic trypsin II) (Pretrypsinogen II) - Rattus norvegicus (Rat). 231s MRALLFLALVGAAVAFPVDDDDKIVGGYTCQENSVPYQVSLNSGYHFCGG 231s SLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIKHPNFD 231s RKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSS 231s GVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDS 231s GGPVVCNGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 231s >sp|P07146|TRY2_MOUSE Anionic trypsin-2 precursor (EC 3.4.21.4) (Anionic trypsin II) (Pretrypsinogen II) - Mus musculus (Mouse). 231s MSALLILALVGAAVAFPVDDDDKIVGGYTCRESSVPYQVSLNAGYHFCGG 231s SLINDQWVVSAAHCYKYRIQVRLGEHNINVLEGNEQFVDSAKIIRHPNYN 231s SWTLDNDIMLIKLASPVTLNARVASVPLPSSCAPAGTQCLISGWGNTLSN 231s GVNNPDLLQCVDAPVLPQADCEASYPGDITNNMICVGFLEGGKDSCQGDS 231s GGPVVCNGELQGIVSWGYGCAQPDAPGVYTKVCNYVDWIQNTIADN 231s >sp|P35030|TRY3_HUMAN Trypsin-3 precursor (EC 3.4.21.4) (Trypsin III) (Brain trypsinogen) (Mesotrypsinogen) (Trypsin IV) - Homo sapiens (Human). 231s MCGPDDRCPARWPGPGRAVKCGKGLAAARPGRVERGGAQRGGAGLELHPL 231s LGGRTWRAARDADGCEALGTVAVPFDDDDKIVGGYTCEENSLPYQVSLNS 231s GSHFCGGSLISEQWVVSAAHCYKTRIQVRLGEHNIKVLEGNEQFINAAKI 231s IRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTECLISG 231s WGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVGFLEGGK 231s DSCQRDSGGPVVCNGQLQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTI 231s AANS 231s >sp|Q7JIG6|KLK15_SAGOE Kallikrein-15 precursor (EC 3.4.21.-) - Saguinus oedipus (Cotton-top tamarin). 231s MWLLLPLSFLLTSTAQDGGKLLEGEECAPHSQPWQVALYERGRFNCGASL 231s ISPHWVLSAAHCQSRFMRVRLGEHNLRKRDGPEQLRTASRVIPHPRYEAR 231s SHRHDIMLLRLVQPARLTPQVRPVVLPTRCPHPGEACVVSGWGLVSHNEP 231s GTTGRPQSQVSLPDTLHCANISIISDASCDKNYPGRLTNTMVCAGAEGRG 231s AESCEGDSGGPLVCGGILQGIVSWGDVPCDNTTKPGVYTKVCRYVKWIRE 231s TMKRN 231s >sp_vs|P35030-2|P35030 Isoform B of P35030 231s MELHPLLGGRTWRAARDADGCEALGTVAVPFDDDDKIVGGYTCEENSLPY 231s QVSLNSGSHFCGGSLISEQWVVSAAHCYKTRIQVRLGEHNIKVLEGNEQF 231s INAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGT 231s ECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVG 231s FLEGGKDSCQRDSGGPVVCNGQLQGVVSWGHGCAWKNRPGVYTKVYNYVD 231s WIKDTIAANS 231s >sp_vs|P35030-3|P35030 Isoform C of P35030 231s MNPFLILAFVGAAVAVPFDDDDKIVGGYTCEENSLPYQVSLNSGSHFCGG 231s SLISEQWVVSAAHCYKTRIQVRLGEHNIKVLEGNEQFINAAKIIRHPKYN 231s RDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTECLISGWGNTLSF 231s GADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVGFLEGGKDSCQRDS 231s GGPVVCNGQLQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIAANS 231s >sp|P11032|GRAA_MOUSE Granzyme A precursor (EC 3.4.21.78) (T cell-specific serine protease 1) (TSP-1) (CTLA-3) (Fragmentin-1) (Autocrine thymic lymphoma granzyme-like serine protease) - Mus musculus (Mouse). 231s MRNASGPRGPSLATLLFLLLIPEGGCERIIGGDTVVPHSRPYMALLKLSS 231s NTICAGALIEKNWVLTAAHCNVGKRSKFILGAHSINKEPEQQILTVKKAF 231s PYPCYDEYTREGDLQLVRLKKKATVNRNVAILHLPKKGDDVKPGTRCRVA 231s GWGRFGNKSAPSETLREVNITVIDRKICNDEKHYNFHPVIGLNMICAGDL 231s RGGKDSCNGDSGSPLLCDGILRGITSFGGEKCGDRRWPGVYTFLSDKHLN 231s WIKKIMKGSV 231s >sp_vs|P11032-2|P11032 Isoform HF2 of P11032 231s MSKEMNEILLSWEINLSSKRGGCERIIGGDTVVPHSRPYMALLKLSSNTI 231s CAGALIEKNWVLTAAHCNVGKRSKFILGAHSINKEPEQQILTVKKAFPYP 231s CYDEYTREGDLQLVRLKKKATVNRNVAILHLPKKGDDVKPGTRCRVAGWG 231s RFGNKSAPSETLREVNITVIDRKICNDEKHYNFHPVIGLNMICAGDLRGG 231s KDSCNGDSGSPLLCDGILRGITSFGGEKCGDRRWPGVYTFLSDKHLNWIK 231s KIMKGSV 231s >sp|P06871|TRY1_CANFA Cationic trypsin precursor (EC 3.4.21.4) - Canis familiaris (Dog). 231s MKTFIFLALLGATVAFPIDDDDKIVGGYTCSRNSVPYQVSLNSGYHFCGG 231s SLINSQWVVSAAHCYKSRIQVRLGEYNIAVSEGGEQFINAAKIIRHPRYN 231s ANTIDNDIMLIKLSSPATLNSRVSAIALPKSCPAAGTQCLISGWGNTQSI 231s GQNYPDVLQCLKAPILSDSVCRNAYPGQISSNMMCLGYMEGGKDSCQGDS 231s GGPVVCNGELQGVVSWGAGCAQKGKPGVSPKVCKYVSWIQQTIAAN 231s >sp|P07478|TRY2_HUMAN Trypsin-2 precursor (EC 3.4.21.4) (Trypsin II) (Anionic trypsinogen) - Homo sapiens (Human). 231s MNLLLILTFVAAAVAAPFDDDDKIVGGYICEENSVPYQVSLNSGYHFCGG 231s SLISEQWVVSAGHCYKSRIQVRLGEHNIEVLEGNEQFINAAKIIRHPKYN 231s SRTLDNDILLIKLSSPAVINSRVSAISLPTAPPAAGTESLISGWGNTLSS 231s GADYPDELQCLDAPVLSQAECEASYPGKITNNMFCVGFLEGGKDSCQGDS 231s GGPVVSNGELQGIVSWGYGCAQKNRPGVYTKVYNYVDWIKDTIAANS 231s >sp|P19799|TRY1_XENLA Trypsin precursor (EC 3.4.21.4) - Xenopus laevis (African clawed frog). 231s MKFLLLCVLLGAAAAFDDDKIIGGATCAKSSVPYIVSLNSGYHFCGGSLI 231s TNQWVVSAAHCYKASIQVRLGEHNIALSEGTEQFISSSKVIRHSGYNSYT 231s LDNDIMLIKLSSPASLNAAVNTVPLPSGCSAAGTSCLISGWGNTLSNGSN 231s YPDLLQCLNAPILTNAQCNSAYPGEITANMICVGYMEGGKDSCQGDSGGP 231s VVCNGQLQGVVSWGYGCAMRNYPGVYTKVCNYNAWIQNTIAAN 231s >sp|P49864|GRAK_RAT Granzyme K precursor (EC 3.4.21.-) (NK-tryptase-2) (NK-Tryp-2) - Rattus norvegicus (Rat). 231s MSFSSSALVFLVAGIYMSSESFHTEIIGGREVQPHSRPFMASIQYRGKHI 231s CGGVLIHPQWVLTAAHCYSRGHSPTVVLGAHSLSKNEPMKQTFEIKEFIP 231s FSGFKSGTNDIMLIKLRTAAELNKHVQLLHLRSKNYIRDGTKCQVTGWGS 231s TKPDVLTTSDTLQEVTVTIISRKRCNSQSYYNHKPVITKDMICAGDRRGE 231s KDSCKGDSGGPLICKGVFHALVSGGYKCGISNKPGVYTLLTKKYQTWIKS 231s KLAPSSAH 231s >sp|Q90629|TRY3_CHICK Trypsin II-P29 precursor (EC 3.4.21.4) - Gallus gallus (Chicken). 231s MKFLFLILSCLGAAVAFPGGADDDKIVGGYTCPEHSVPYQVSLNSGYHFC 231s GGSLINSQWVLSAAHCYKSRIQVRLGEYNIDVQEDSEVVRSSSVIIRHPK 231s YSSITLNNDIMLIKLASAVEYSADIQPIALPSSCAKAGTECLISGWGNTL 231s SNGYNYPELLQCLNAPILSDQECQEAYPGDITSNMICVGFLEGGKDSCQG 231s DSGGPVVCNGELQGIVSWGIGCALKGYPGVYTKVCNYVDWIQETIAAY 231s >sp|P49863|GRAK_HUMAN Granzyme K precursor (EC 3.4.21.-) (Granzyme-3) (NK-tryptase-2) (NK- TRYP-2) (Fragmentin-3) - Homo sapiens (Human). 231s MTKFSSFSLFFLIVGAYMTHVCFNMEIIGGKEVSPHSRPFMASIQYGGHH 231s VCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIK 231s KFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCK 231s VTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCA 231s GDAKGQKDSCKGDSGGPLICKGVFHAIVSGGHECGVATKPGIYTLLTKKY 231s QTWIKSNLVPPHTN 231s >sp|O35205|GRAK_MOUSE Granzyme K precursor (EC 3.4.21.-) - Mus musculus (Mouse). 231s MRFSSWALVSLVAGVYMSSECFHTEIIGGREVQPHSRPFMASIQYRSKHI 231s CGGVLIHPQWVLTAAHCYSWFPRGHSPTVVLGAHSLSKNEPMKQTFEIKK 231s FIPFSRLQSGSASHDIMLIKLRTAAELNKNVQLLHLGSKNYLRDGTKCQV 231s TGWGTTKPDLLTASDTLREVTVTIISRKRCNSQSYYNHKPVITKDMICAG 231s DARGQKDSCKGDSGGPLICKGIFHALVSQGYKCGIAKKPGIYTLLTKKYQ 231s TWIKSKLAPSRAH 231s >sp|P32822|TRYB_RAT Trypsin V-B precursor (EC 3.4.21.4) - Rattus norvegicus (Rat). 231s MKICIFFTLLGTVAAFPTEDNDDRIVGGYTCQEHSVPYQVSLNAGSHICG 231s GSLITDQWVLSAAHCYHPQLQVRLGEHNIYEIEGAEQFIDAAKMILHPDY 231s DKWTVDNDIMLIKLKSPATLNSKVSTIPLPQYCPTAGTECLVSGWGVLKF 231s GFESPSVLQCLDAPVLSDSVCHKAYPRQITNNMFCLGFLEGGKDSCQYDS 231s GGPVVCNGEVQGIVSWGDGCALEGKPGVYTKVCNYLNWIQQTVAAN 231s >sp|P00760|TRY1_BOVIN Cationic trypsin precursor (EC 3.4.21.4) (Beta-trypsin) [Contains: Alpha-trypsin chain 1; Alpha-trypsin chain 2] (Fragment) - Bos taurus (Bovine). 231s FIFLALLGAAVAFPVDDDDKIVGGYTCGANTVPYQVSLNSGYHFCGGSLI 231s NSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNT 231s LNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTS 231s YPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGP 231s VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 231s >sp|Q92876|KLK6_HUMAN Kallikrein-6 precursor (EC 3.4.21.-) (Protease M) (Neurosin) (Zyme) (SP59) - Homo sapiens (Human). 231s MKKLMVVLSLIAAAWAEEQNKLVHGGPCDKTSHPYQAALYTSGHLLCGGV 231s LIHPLWVLTAAHCKKPNLQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDA 231s ASHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHILGWGKTADGD 231s FPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGP 231s LVCGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQAK 231s >sp|Q9Y5K2|KLK4_HUMAN Kallikrein-4 precursor (EC 3.4.21.-) (Prostase) (Kallikrein-like protein 1) (KLK-L1) (Enamel matrix serine proteinase 1) - Homo sapiens (Human). 231s MATAGNPWGWFLGYLILGVAGSLVSGSCSQIINGEDCSPHSQPWQAALVM 231s ENELFCSGVLVHPQWVLSAAHCFQNSYTIGLGLHSLEADQEPGSQMVEAS 231s LSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCPTAGNSCLV 231s SGWGLLANGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQDQK 231s DSCNGDSGGPLICNGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKT 231s VQAS 231s >sp|P32821|TRYA_RAT Trypsin V-A precursor (EC 3.4.21.4) - Rattus norvegicus (Rat). 231s MKICIFFTLLGTVAAFPTEDNDDRIVGGYTCQEHSVPYQVSLNAGSHICG 231s GSLITDQWVLSAAHCYHPQLQVRLGEHNIYEIEGAEQFIDAAKMILHPDY 231s DKWTVDNDIMLIKLKSPATLNSKVSTIPLPQYCPTAGTECLVSGWGVLKF 231s GFESPSVLQCLDAPVLSDSVCHKAYPRQITNNMFCLGFLEGGKDSCQYDS 231s GGPVVCNGEVQGIVSWGDGCALEGKPGVYTKVCNYLNWIHQTIAEN 231s >sp|P12788|TRY4_RAT Trypsin-4 precursor (EC 3.4.21.4) (Trypsin IV) (Pretrypsinogen IV) - Rattus norvegicus (Rat). 231s MKISIFFAFLGAAVALPVNDDDKIVGGYTCPKHLVPYQVSLHDGISHQCG 231s GSLISDQWVLSAAHCYKRKLQVRLGEHNIHVLEGGEQFIDAEKIIRHPEY 231s NKDTLDNDIMLIKLKSPAVLNSQVSTVSLPRSCASTDAQCLVSGWGNTVS 231s IGGKYPALLQCLEAPVLSASSCKKSYPGQITSNMFCLGFLEGGKDSCDGD 231s SGGPVVCNGEIQGIVSWGSVCAMRGKPGVYTKVCNYLSWIQETMANN 231s >sp|Q61096|PRTN3_MOUSE Myeloblastin precursor (EC 3.4.21.76) (Proteinase 3) (PR-3) - Mus musculus (Mouse). 231s MSGSYPSPKGIHPFLLLALVVGGAVQASKIVGGHEARPHSRPYVASLQLS 231s RFPGSHFCGGTLIHPRFVLTAAHCLQDISWQLVTVVLGAHDLLSSEPEQQ 231s KFTISQVFQNNYNPEENLNDVLLLQLNRTASLGKEVAVASLPQQDQTLSQ 231s GTQCLAMGWGRLGTQAPTPRVLQELNVTVVTFLCREHNVCTLVPRRAAGI 231s CFGDSGGPLICNGILHGVDSFVIRECASLQFPDFFARVSMYVDWIQNVLR 231s GAEP 231s >sp|P00764|TRYP_SQUAC Trypsin precursor (EC 3.4.21.4) - Squalus acanthias (Spiny dogfish). 231s APDDDDKIVGGYECPKHAAPWTVSLNVGYHFCGGSLIAPGWVVSAAHCYQ 231s RRIQVRLGEHDISANEGDETYIDSSMVIRHPNYSGYDLDNDIMLIKLSKP 231s AALNRNVDLISLPTGCAYAGEMCLISGWGNTMDGAVSGDQLQCLDAPVLS 231s DAECKGAYPGMITNNMMCVGYMEGGKDSCQGDSGGPVVCNGMLQGIVSWG 231s YGCAERDHPGVYTRVCHYVSWIHETIASV 231s >sp|P32038|CFAD_RAT Complement factor D precursor (EC 3.4.21.46) (C3 convertase activator) (Properdin factor D) (Adipsin) (Endogenous vascular elastase) - Rattus norvegicus (Rat). 231s MHSSVYLVALVVLEAAVCVAQPRGRILGGQEAMAHARPYMASVQVNGTHV 231s CGGTLVDEQWVLSAAHCMDGVTKDEVVQVLLGAHSLSSPEPYKHLYDVQS 231s VVLHPGSRPDSVEDDLMLFKLSHNASLGPHVRPLPLQREDREVKPGTLCD 231s VAGWGVVTHAGRRPDVLQQLTVSIMDRNTCNLRTYHDGAITKNMMCAESN 231s RRDTCRGDSGGPLVCGDAVEAVVTWGSRVCGNRRKPGVFTRVATYVPWIE 231s NVLSGNVSVNVTA 231s >sp|Q7YRZ7|GRAA_BOVIN Granzyme A precursor (EC 3.4.21.78) - Bos taurus (Bovine). 231s MNIPFPFSFPPAICLLLIPGVFPVSCEGIIGGNEVAPHTRRYMALIKGLK 231s LCAGALIKENWVLTAAHCDLKGNPQVILGAHSTSHKEKLDQVFSIKKAIP 231s YPCFDPQTFEGDLQLLQLEGKATMTKAVGILQLPRTEDDVKPHTKCHVAG 231s WGSTKKDACQMSNALREANVTVIDRKICNDAQHYNFNPVIDLSMICAGGR 231s KGEDDSCEGDSGSPLICDNVFRGVTSFGKCGNPQKPGIYILLTKKHLNWI 231s KKTIAGAI 234s autopkgtest [18:09:35]: test run-unit-test: -----------------------] 238s autopkgtest [18:09:39]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 238s run-unit-test PASS 242s autopkgtest [18:09:43]: @@@@@@@@@@@@@@@@@@@@ summary 242s run-unit-test PASS