0s autopkgtest [17:56:20]: starting date and time: 2025-03-15 17:56:20+0000 0s autopkgtest [17:56:20]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:56:20]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.tg294bpn/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade sweed --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.197 lxd-armhf-10.145.243.197:autopkgtest/ubuntu/plucky/armhf 20s autopkgtest [17:56:40]: testbed dpkg architecture: armhf 22s autopkgtest [17:56:42]: testbed apt version: 2.9.33 26s autopkgtest [17:56:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup 28s autopkgtest [17:56:48]: testbed release detected to be: None 35s autopkgtest [17:56:55]: updating testbed package index (apt update) 38s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 38s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 38s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 38s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 38s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 38s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 38s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 38s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [114 kB] 39s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1832 B] 39s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 39s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [312 kB] 39s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [11.1 kB] 39s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 39s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 39s Get:15 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 39s Get:16 http://ftpmaster.internal/ubuntu plucky/main Sources [1394 kB] 41s Get:17 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 60s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 62s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 62s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 62s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 75s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 77s Fetched 41.0 MB in 40s (1033 kB/s) 78s Reading package lists... 84s autopkgtest [17:57:44]: upgrading testbed (apt dist-upgrade and autopurge) 85s Reading package lists... 86s Building dependency tree... 86s Reading state information... 86s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 86s Starting 2 pkgProblemResolver with broken count: 0 86s Done 87s Entering ResolveByKeep 87s 88s Calculating upgrade... 88s The following packages will be upgraded: 88s libc-bin libc6 locales pinentry-curses python3-jinja2 sos strace 88s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 88s Need to get 8683 kB of archives. 88s After this operation, 23.6 kB of additional disk space will be used. 88s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 91s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 92s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 96s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 96s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 96s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 96s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 97s Preconfiguring packages ... 97s Fetched 8683 kB in 8s (1050 kB/s) 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 97s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 97s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 97s Setting up libc6:armhf (2.41-1ubuntu2) ... 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 98s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 98s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 98s Setting up libc-bin (2.41-1ubuntu2) ... 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 98s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 98s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 98s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 98s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 98s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 98s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 98s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 98s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 99s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 99s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 99s Setting up sos (4.9.0-5) ... 100s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 100s Setting up locales (2.41-1ubuntu2) ... 100s Generating locales (this might take a while)... 102s en_US.UTF-8... done 102s Generation complete. 102s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 102s Setting up strace (6.13+ds-1ubuntu1) ... 102s Processing triggers for man-db (2.13.0-1) ... 104s Processing triggers for systemd (257.3-1ubuntu3) ... 106s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s Starting pkgProblemResolver with broken count: 0 107s Starting 2 pkgProblemResolver with broken count: 0 107s Done 107s Solving dependencies... 108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s autopkgtest [17:58:10]: rebooting testbed after setup commands that affected boot 148s autopkgtest [17:58:48]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 173s autopkgtest [17:59:13]: @@@@@@@@@@@@@@@@@@@@ apt-source sweed 183s Get:1 http://ftpmaster.internal/ubuntu plucky/universe sweed 3.2.1+dfsg-6 (dsc) [1978 B] 183s Get:2 http://ftpmaster.internal/ubuntu plucky/universe sweed 3.2.1+dfsg-6 (tar) [62.1 kB] 183s Get:3 http://ftpmaster.internal/ubuntu plucky/universe sweed 3.2.1+dfsg-6 (diff) [7784 B] 183s gpgv: Signature made Tue Dec 3 10:24:07 2024 UTC 183s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 183s gpgv: issuer "tille@debian.org" 183s gpgv: Can't check signature: No public key 183s dpkg-source: warning: cannot verify inline signature for ./sweed_3.2.1+dfsg-6.dsc: no acceptable signature found 183s autopkgtest [17:59:23]: testing package sweed version 3.2.1+dfsg-6 185s autopkgtest [17:59:25]: build not needed 187s autopkgtest [17:59:27]: test run-unit-test: preparing testbed 189s Reading package lists... 189s Building dependency tree... 189s Reading state information... 189s Starting pkgProblemResolver with broken count: 0 190s Starting 2 pkgProblemResolver with broken count: 0 190s Done 190s The following NEW packages will be installed: 190s sweed 191s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 191s Need to get 59.2 kB of archives. 191s After this operation, 109 kB of additional disk space will be used. 191s Get:1 http://ftpmaster.internal/ubuntu plucky/universe armhf sweed armhf 3.2.1+dfsg-6 [59.2 kB] 191s Fetched 59.2 kB in 0s (190 kB/s) 191s Selecting previously unselected package sweed. 191s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 191s Preparing to unpack .../sweed_3.2.1+dfsg-6_armhf.deb ... 191s Unpacking sweed (3.2.1+dfsg-6) ... 191s Setting up sweed (3.2.1+dfsg-6) ... 191s Processing triggers for man-db (2.13.0-1) ... 199s autopkgtest [17:59:39]: test run-unit-test: [----------------------- 201s Test 1 201s 201s 201s _______________ 201s 201s SweeD 201s _______________ 201s 201s 201s 201s SweeD version 3.1 released by Nikolaos Alachiotis and Pavlos Pavlidis in January 2013. 201s 201s 201s Command: 201s 201s SweeD -name test1 -input ms.out -grid 15 -length 1000 201s 201s 201s Alignment 1 201s 201s Sequences: 5 201s Sites: 6 201s Discarded sites: 0 201s 201s Processing: 0.00 seconds 201s 201s Position: 7.360000e+02 201s Likelihood: 1.716739e-01 201s Alpha: 1.012449e-01 201s 201s 201s Alignment 2 201s 201s Sequences: 5 201s Sites: 4 201s Discarded sites: 0 201s 201s Processing: 0.00 seconds 201s 201s Position: 4.260000e+02 201s Likelihood: 6.774829e-03 201s Alpha: 2.089549e-01 201s 201s 201s Total elapsed time 0.00 seconds. 201s 201s 201s PASS 201s Test 2 201s 201s 201s _______________ 201s 201s SweeD 201s _______________ 201s 201s 201s 201s SweeD version 3.1 released by Nikolaos Alachiotis and Pavlos Pavlidis in January 2013. 201s 201s 201s Command: 201s 201s SweeD -name test3 -input macs.out -length 10000 -grid 100 201s 201s 201s Alignment 1 201s 201s Sequences: 40 201s Sites: 6 201s Discarded sites: 0 201s 201s Processing: 0.02 seconds 201s 201s Position: 1.197000e+03 201s Likelihood: 8.400463e-05 201s Alpha: 6.762359e-03 201s 201s 201s Alignment 2 201s 201s Sequences: 40 201s Sites: 5 201s Discarded sites: 0 201s 201s Processing: 0.02 seconds 201s 201s Position: 7.045000e+03 201s Likelihood: 9.184610e-01 201s Alpha: 5.543519e-03 201s 201s 201s Total elapsed time 0.03 seconds. 201s 201s 201s PASS 201s Test 3 201s 201s 201s _______________ 201s 201s SweeD 201s _______________ 201s 201s 201s 201s SweeD version 3.1 released by Nikolaos Alachiotis and Pavlos Pavlidis in January 2013. 201s 201s 201s Command: 201s 201s SweeD -name test -input data.VCF -grid 15 201s 201s 201s Alignment 1 201s 201s Chromosome: 20 201s Sequences: 6 201s Sites: 3 201s Discarded sites: 2 201s 201s Processing: 0.00 seconds 201s 201s Position: 0.000000e+00 201s Likelihood: 0.000000e+00 201s Alpha: 0.000000e+00 201s 201s 201s Total elapsed time 0.00 seconds. 201s 201s 201s PASS 201s Test 4 201s 201s 201s _______________ 201s 201s SweeD 201s _______________ 201s 201s 201s 201s SweeD version 3.1 released by Nikolaos Alachiotis and Pavlos Pavlidis in January 2013. 201s 201s 201s Command: 201s 201s SweeD -name test -input data.FA -grid 15 201s 201s 201s Alignment 1 201s segsites: 60 length: 60 201s Outgroup: none 201s 201s Sequences: 4 201s Sites: 60 201s Discarded sites: 26 201s 201s Processing: 0.00 seconds 201s 201s Position: 0.000000e+00 201s Likelihood: 0.000000e+00 201s Alpha: 0.000000e+00 201s 201s 201s Alignment 2 201s segsites: 60 length: 60 201s Outgroup: none 201s 201s Sequences: 4 201s Sites: 60 201s Discarded sites: 26 201s 201s Processing: 0.00 seconds 201s 201s Position: 0.000000e+00 201s Likelihood: 0.000000e+00 201s Alpha: 0.000000e+00 201s 201s 201s Total elapsed time 0.00 seconds. 201s 201s 201s PASS 202s autopkgtest [17:59:42]: test run-unit-test: -----------------------] 205s autopkgtest [17:59:45]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 205s run-unit-test PASS 209s autopkgtest [17:59:49]: @@@@@@@@@@@@@@@@@@@@ summary 209s run-unit-test PASS