0s autopkgtest [17:42:33]: starting date and time: 2025-03-15 17:42:33+0000 0s autopkgtest [17:42:33]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:42:33]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1t2cq28z/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade smalt --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.234 lxd-armhf-10.145.243.234:autopkgtest/ubuntu/plucky/armhf 26s autopkgtest [17:42:59]: testbed dpkg architecture: armhf 28s autopkgtest [17:43:01]: testbed apt version: 2.9.33 32s autopkgtest [17:43:05]: @@@@@@@@@@@@@@@@@@@@ test bed setup 34s autopkgtest [17:43:07]: testbed release detected to be: None 42s autopkgtest [17:43:15]: updating testbed package index (apt update) 44s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 44s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 44s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 45s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 45s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 45s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 45s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 45s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [114 kB] 45s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1832 B] 45s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 45s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [312 kB] 45s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [11.1 kB] 45s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 45s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 45s Get:15 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 45s Get:16 http://ftpmaster.internal/ubuntu plucky/main Sources [1394 kB] 46s Get:17 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 56s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 56s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 56s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 56s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 62s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 63s Fetched 41.0 MB in 20s (2097 kB/s) 65s Reading package lists... 70s autopkgtest [17:43:43]: upgrading testbed (apt dist-upgrade and autopurge) 72s Reading package lists... 73s Building dependency tree... 73s Reading state information... 73s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 73s Starting 2 pkgProblemResolver with broken count: 0 73s Done 74s Entering ResolveByKeep 75s 75s Calculating upgrade... 75s The following packages will be upgraded: 75s libc-bin libc6 locales pinentry-curses python3-jinja2 sos strace 76s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 76s Need to get 8683 kB of archives. 76s After this operation, 23.6 kB of additional disk space will be used. 76s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 78s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 78s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 81s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 81s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 81s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 82s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 82s Preconfiguring packages ... 82s Fetched 8683 kB in 6s (1388 kB/s) 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 83s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 83s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 83s Setting up libc6:armhf (2.41-1ubuntu2) ... 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 83s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 83s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 83s Setting up libc-bin (2.41-1ubuntu2) ... 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 84s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 84s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 84s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 84s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 84s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 84s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 84s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 84s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 84s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 84s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 85s Setting up sos (4.9.0-5) ... 85s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 85s Setting up locales (2.41-1ubuntu2) ... 86s Generating locales (this might take a while)... 88s en_US.UTF-8... done 88s Generation complete. 88s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 89s Setting up strace (6.13+ds-1ubuntu1) ... 89s Processing triggers for man-db (2.13.0-1) ... 90s Processing triggers for systemd (257.3-1ubuntu3) ... 92s Reading package lists... 93s Building dependency tree... 93s Reading state information... 94s Starting pkgProblemResolver with broken count: 0 94s Starting 2 pkgProblemResolver with broken count: 0 95s Done 95s Solving dependencies... 97s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s autopkgtest [17:44:12]: rebooting testbed after setup commands that affected boot 139s autopkgtest [17:44:52]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 164s autopkgtest [17:45:17]: @@@@@@@@@@@@@@@@@@@@ apt-source smalt 249s Get:1 http://ftpmaster.internal/ubuntu plucky/universe smalt 0.7.6-13 (dsc) [2100 B] 249s Get:2 http://ftpmaster.internal/ubuntu plucky/universe smalt 0.7.6-13 (tar) [72.3 MB] 249s Get:3 http://ftpmaster.internal/ubuntu plucky/universe smalt 0.7.6-13 (diff) [9876 B] 249s gpgv: Signature made Fri Jan 12 06:08:11 2024 UTC 249s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 249s gpgv: issuer "tillea@rki.de" 249s gpgv: Can't check signature: No public key 249s dpkg-source: warning: cannot verify inline signature for ./smalt_0.7.6-13.dsc: no acceptable signature found 251s autopkgtest [17:46:44]: testing package smalt version 0.7.6-13 253s autopkgtest [17:46:46]: build not needed 257s autopkgtest [17:46:50]: test run-unit-test: preparing testbed 258s Reading package lists... 259s Building dependency tree... 259s Reading state information... 260s Starting pkgProblemResolver with broken count: 0 260s Starting 2 pkgProblemResolver with broken count: 0 260s Done 262s The following NEW packages will be installed: 262s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 262s cpp-14-arm-linux-gnueabihf cpp-arm-linux-gnueabihf debhelper debugedit 262s dh-autoreconf dh-strip-nondeterminism dwz g++ g++-14 262s g++-14-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc gcc-14 262s gcc-14-arm-linux-gnueabihf gcc-arm-linux-gnueabihf gettext intltool-debian 262s libarchive-zip-perl libasan8 libbambamc-dev libbambamc0 libc-dev-bin 262s libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl libdeflate0 libdw1t64 262s libfile-stripnondeterminism-perl libgcc-14-dev libgomp1 libhts3t64 262s libhtscodecs2 libisl23 libmpc3 libpkgconf3 libstdc++-14-dev libtool 262s libubsan1 linux-libc-dev m4 pkg-config pkgconf pkgconf-bin po-debconf 262s rpcsvc-proto samtools smalt smalt-examples zlib1g-dev 262s 0 upgraded, 57 newly installed, 0 to remove and 0 not upgraded. 262s Need to get 129 MB of archives. 262s After this operation, 237 MB of additional disk space will be used. 262s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf m4 armhf 1.4.19-7 [238 kB] 262s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf autoconf all 2.72-3ubuntu1 [383 kB] 263s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf autotools-dev all 20220109.1 [44.9 kB] 263s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf automake all 1:1.17-3ubuntu1 [572 kB] 263s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf autopoint all 0.23.1-1 [619 kB] 264s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-dev-bin armhf 2.41-1ubuntu2 [23.0 kB] 264s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf linux-libc-dev armhf 6.14.0-10.10 [1683 kB] 265s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libcrypt-dev armhf 1:4.4.38-1 [120 kB] 265s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB] 265s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6-dev armhf 2.41-1ubuntu2 [1396 kB] 266s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libisl23 armhf 0.27-1 [546 kB] 267s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libmpc3 armhf 1.3.1-1build2 [47.1 kB] 267s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [9220 kB] 276s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14 armhf 14.2.0-17ubuntu3 [1030 B] 276s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [5578 B] 276s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf cpp armhf 4:14.2.0-1ubuntu1 [22.4 kB] 276s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libcc1-0 armhf 15-20250222-0ubuntu1 [38.9 kB] 276s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 15-20250222-0ubuntu1 [128 kB] 276s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libasan8 armhf 15-20250222-0ubuntu1 [2955 kB] 279s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libubsan1 armhf 15-20250222-0ubuntu1 [1191 kB] 280s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-14-dev armhf 14.2.0-17ubuntu3 [897 kB] 280s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [18.0 MB] 296s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14 armhf 14.2.0-17ubuntu3 [506 kB] 296s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [1218 B] 296s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf gcc armhf 4:14.2.0-1ubuntu1 [5004 B] 297s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++-14-dev armhf 14.2.0-17ubuntu3 [2573 kB] 299s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [10.5 MB] 308s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14 armhf 14.2.0-17ubuntu3 [21.8 kB] 308s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf g++-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [966 B] 308s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf g++ armhf 4:14.2.0-1ubuntu1 [1084 B] 308s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf build-essential armhf 12.10ubuntu1 [4928 B] 308s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB] 308s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libtool all 2.5.4-4 [168 kB] 308s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf dh-autoreconf all 20 [16.1 kB] 308s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] 308s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB] 308s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf dh-strip-nondeterminism all 1.14.1-2 [5064 B] 308s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB] 308s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf debugedit armhf 1:5.1-2 [46.7 kB] 308s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf dwz armhf 0.15-1build6 [116 kB] 308s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf gettext armhf 0.23.1-1 [1053 kB] 309s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf intltool-debian all 0.35.0+20060710.6 [23.2 kB] 309s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf po-debconf all 1.0.21+nmu1 [233 kB] 309s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf debhelper all 13.24.1ubuntu2 [895 kB] 310s Get:45 http://ftpmaster.internal/ubuntu plucky/universe armhf libbambamc0 armhf 0.0.50-6build1 [34.1 kB] 310s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libpkgconf3 armhf 1.8.1-4 [26.6 kB] 310s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf pkgconf-bin armhf 1.8.1-4 [21.2 kB] 310s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf pkgconf armhf 1.8.1-4 [16.8 kB] 310s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf pkg-config armhf 1.8.1-4 [7362 B] 310s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1ubuntu1 [880 kB] 311s Get:51 http://ftpmaster.internal/ubuntu plucky/universe armhf libbambamc-dev armhf 0.0.50-6build1 [47.1 kB] 311s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.23-1 [38.5 kB] 311s Get:53 http://ftpmaster.internal/ubuntu plucky/universe armhf libhtscodecs2 armhf 1.6.1-2 [67.5 kB] 311s Get:54 http://ftpmaster.internal/ubuntu plucky/universe armhf libhts3t64 armhf 1.21+ds-1 [399 kB] 311s Get:55 http://ftpmaster.internal/ubuntu plucky/universe armhf samtools armhf 1.21-1 [619 kB] 311s Get:56 http://ftpmaster.internal/ubuntu plucky/universe armhf smalt armhf 0.7.6-13 [106 kB] 311s Get:57 http://ftpmaster.internal/ubuntu plucky/universe armhf smalt-examples all 0.7.6-13 [71.9 MB] 375s Fetched 129 MB in 1min 53s (1144 kB/s) 375s Selecting previously unselected package m4. 375s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 375s Preparing to unpack .../00-m4_1.4.19-7_armhf.deb ... 375s Unpacking m4 (1.4.19-7) ... 376s Selecting previously unselected package autoconf. 376s Preparing to unpack .../01-autoconf_2.72-3ubuntu1_all.deb ... 376s Unpacking autoconf (2.72-3ubuntu1) ... 376s Selecting previously unselected package autotools-dev. 376s Preparing to unpack .../02-autotools-dev_20220109.1_all.deb ... 376s Unpacking autotools-dev (20220109.1) ... 376s Selecting previously unselected package automake. 376s Preparing to unpack .../03-automake_1%3a1.17-3ubuntu1_all.deb ... 376s Unpacking automake (1:1.17-3ubuntu1) ... 376s Selecting previously unselected package autopoint. 376s Preparing to unpack .../04-autopoint_0.23.1-1_all.deb ... 376s Unpacking autopoint (0.23.1-1) ... 376s Selecting previously unselected package libc-dev-bin. 376s Preparing to unpack .../05-libc-dev-bin_2.41-1ubuntu2_armhf.deb ... 376s Unpacking libc-dev-bin (2.41-1ubuntu2) ... 376s Selecting previously unselected package linux-libc-dev:armhf. 376s Preparing to unpack .../06-linux-libc-dev_6.14.0-10.10_armhf.deb ... 376s Unpacking linux-libc-dev:armhf (6.14.0-10.10) ... 376s Selecting previously unselected package libcrypt-dev:armhf. 376s Preparing to unpack .../07-libcrypt-dev_1%3a4.4.38-1_armhf.deb ... 376s Unpacking libcrypt-dev:armhf (1:4.4.38-1) ... 376s Selecting previously unselected package rpcsvc-proto. 376s Preparing to unpack .../08-rpcsvc-proto_1.4.2-0ubuntu7_armhf.deb ... 376s Unpacking rpcsvc-proto (1.4.2-0ubuntu7) ... 376s Selecting previously unselected package libc6-dev:armhf. 376s Preparing to unpack .../09-libc6-dev_2.41-1ubuntu2_armhf.deb ... 376s Unpacking libc6-dev:armhf (2.41-1ubuntu2) ... 377s Selecting previously unselected package libisl23:armhf. 377s Preparing to unpack .../10-libisl23_0.27-1_armhf.deb ... 377s Unpacking libisl23:armhf (0.27-1) ... 377s Selecting previously unselected package libmpc3:armhf. 377s Preparing to unpack .../11-libmpc3_1.3.1-1build2_armhf.deb ... 377s Unpacking libmpc3:armhf (1.3.1-1build2) ... 377s Selecting previously unselected package cpp-14-arm-linux-gnueabihf. 377s Preparing to unpack .../12-cpp-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 377s Unpacking cpp-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 377s Selecting previously unselected package cpp-14. 377s Preparing to unpack .../13-cpp-14_14.2.0-17ubuntu3_armhf.deb ... 377s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 377s Selecting previously unselected package cpp-arm-linux-gnueabihf. 377s Preparing to unpack .../14-cpp-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 377s Unpacking cpp-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 377s Selecting previously unselected package cpp. 377s Preparing to unpack .../15-cpp_4%3a14.2.0-1ubuntu1_armhf.deb ... 377s Unpacking cpp (4:14.2.0-1ubuntu1) ... 377s Selecting previously unselected package libcc1-0:armhf. 377s Preparing to unpack .../16-libcc1-0_15-20250222-0ubuntu1_armhf.deb ... 377s Unpacking libcc1-0:armhf (15-20250222-0ubuntu1) ... 377s Selecting previously unselected package libgomp1:armhf. 378s Preparing to unpack .../17-libgomp1_15-20250222-0ubuntu1_armhf.deb ... 378s Unpacking libgomp1:armhf (15-20250222-0ubuntu1) ... 378s Selecting previously unselected package libasan8:armhf. 378s Preparing to unpack .../18-libasan8_15-20250222-0ubuntu1_armhf.deb ... 378s Unpacking libasan8:armhf (15-20250222-0ubuntu1) ... 378s Selecting previously unselected package libubsan1:armhf. 378s Preparing to unpack .../19-libubsan1_15-20250222-0ubuntu1_armhf.deb ... 378s Unpacking libubsan1:armhf (15-20250222-0ubuntu1) ... 378s Selecting previously unselected package libgcc-14-dev:armhf. 378s Preparing to unpack .../20-libgcc-14-dev_14.2.0-17ubuntu3_armhf.deb ... 378s Unpacking libgcc-14-dev:armhf (14.2.0-17ubuntu3) ... 378s Selecting previously unselected package gcc-14-arm-linux-gnueabihf. 378s Preparing to unpack .../21-gcc-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 378s Unpacking gcc-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 379s Selecting previously unselected package gcc-14. 379s Preparing to unpack .../22-gcc-14_14.2.0-17ubuntu3_armhf.deb ... 379s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 379s Selecting previously unselected package gcc-arm-linux-gnueabihf. 379s Preparing to unpack .../23-gcc-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 379s Unpacking gcc-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 379s Selecting previously unselected package gcc. 379s Preparing to unpack .../24-gcc_4%3a14.2.0-1ubuntu1_armhf.deb ... 379s Unpacking gcc (4:14.2.0-1ubuntu1) ... 379s Selecting previously unselected package libstdc++-14-dev:armhf. 379s Preparing to unpack .../25-libstdc++-14-dev_14.2.0-17ubuntu3_armhf.deb ... 379s Unpacking libstdc++-14-dev:armhf (14.2.0-17ubuntu3) ... 380s Selecting previously unselected package g++-14-arm-linux-gnueabihf. 380s Preparing to unpack .../26-g++-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 380s Unpacking g++-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 380s Selecting previously unselected package g++-14. 380s Preparing to unpack .../27-g++-14_14.2.0-17ubuntu3_armhf.deb ... 380s Unpacking g++-14 (14.2.0-17ubuntu3) ... 380s Selecting previously unselected package g++-arm-linux-gnueabihf. 380s Preparing to unpack .../28-g++-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 380s Unpacking g++-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 380s Selecting previously unselected package g++. 380s Preparing to unpack .../29-g++_4%3a14.2.0-1ubuntu1_armhf.deb ... 380s Unpacking g++ (4:14.2.0-1ubuntu1) ... 380s Selecting previously unselected package build-essential. 380s Preparing to unpack .../30-build-essential_12.10ubuntu1_armhf.deb ... 380s Unpacking build-essential (12.10ubuntu1) ... 380s Selecting previously unselected package libdebhelper-perl. 380s Preparing to unpack .../31-libdebhelper-perl_13.24.1ubuntu2_all.deb ... 380s Unpacking libdebhelper-perl (13.24.1ubuntu2) ... 381s Selecting previously unselected package libtool. 381s Preparing to unpack .../32-libtool_2.5.4-4_all.deb ... 381s Unpacking libtool (2.5.4-4) ... 381s Selecting previously unselected package dh-autoreconf. 381s Preparing to unpack .../33-dh-autoreconf_20_all.deb ... 381s Unpacking dh-autoreconf (20) ... 381s Selecting previously unselected package libarchive-zip-perl. 381s Preparing to unpack .../34-libarchive-zip-perl_1.68-1_all.deb ... 381s Unpacking libarchive-zip-perl (1.68-1) ... 381s Selecting previously unselected package libfile-stripnondeterminism-perl. 381s Preparing to unpack .../35-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... 381s Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... 381s Selecting previously unselected package dh-strip-nondeterminism. 381s Preparing to unpack .../36-dh-strip-nondeterminism_1.14.1-2_all.deb ... 381s Unpacking dh-strip-nondeterminism (1.14.1-2) ... 381s Selecting previously unselected package libdw1t64:armhf. 381s Preparing to unpack .../37-libdw1t64_0.192-4_armhf.deb ... 381s Unpacking libdw1t64:armhf (0.192-4) ... 381s Selecting previously unselected package debugedit. 381s Preparing to unpack .../38-debugedit_1%3a5.1-2_armhf.deb ... 381s Unpacking debugedit (1:5.1-2) ... 381s Selecting previously unselected package dwz. 381s Preparing to unpack .../39-dwz_0.15-1build6_armhf.deb ... 381s Unpacking dwz (0.15-1build6) ... 381s Selecting previously unselected package gettext. 381s Preparing to unpack .../40-gettext_0.23.1-1_armhf.deb ... 381s Unpacking gettext (0.23.1-1) ... 382s Selecting previously unselected package intltool-debian. 382s Preparing to unpack .../41-intltool-debian_0.35.0+20060710.6_all.deb ... 382s Unpacking intltool-debian (0.35.0+20060710.6) ... 382s Selecting previously unselected package po-debconf. 382s Preparing to unpack .../42-po-debconf_1.0.21+nmu1_all.deb ... 382s Unpacking po-debconf (1.0.21+nmu1) ... 382s Selecting previously unselected package debhelper. 382s Preparing to unpack .../43-debhelper_13.24.1ubuntu2_all.deb ... 382s Unpacking debhelper (13.24.1ubuntu2) ... 382s Selecting previously unselected package libbambamc0:armhf. 382s Preparing to unpack .../44-libbambamc0_0.0.50-6build1_armhf.deb ... 382s Unpacking libbambamc0:armhf (0.0.50-6build1) ... 382s Selecting previously unselected package libpkgconf3:armhf. 382s Preparing to unpack .../45-libpkgconf3_1.8.1-4_armhf.deb ... 382s Unpacking libpkgconf3:armhf (1.8.1-4) ... 382s Selecting previously unselected package pkgconf-bin. 382s Preparing to unpack .../46-pkgconf-bin_1.8.1-4_armhf.deb ... 382s Unpacking pkgconf-bin (1.8.1-4) ... 382s Selecting previously unselected package pkgconf:armhf. 382s Preparing to unpack .../47-pkgconf_1.8.1-4_armhf.deb ... 382s Unpacking pkgconf:armhf (1.8.1-4) ... 382s Selecting previously unselected package pkg-config:armhf. 382s Preparing to unpack .../48-pkg-config_1.8.1-4_armhf.deb ... 382s Unpacking pkg-config:armhf (1.8.1-4) ... 382s Selecting previously unselected package zlib1g-dev:armhf. 382s Preparing to unpack .../49-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_armhf.deb ... 382s Unpacking zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 382s Selecting previously unselected package libbambamc-dev:armhf. 382s Preparing to unpack .../50-libbambamc-dev_0.0.50-6build1_armhf.deb ... 382s Unpacking libbambamc-dev:armhf (0.0.50-6build1) ... 383s Selecting previously unselected package libdeflate0:armhf. 383s Preparing to unpack .../51-libdeflate0_1.23-1_armhf.deb ... 383s Unpacking libdeflate0:armhf (1.23-1) ... 383s Selecting previously unselected package libhtscodecs2:armhf. 383s Preparing to unpack .../52-libhtscodecs2_1.6.1-2_armhf.deb ... 383s Unpacking libhtscodecs2:armhf (1.6.1-2) ... 383s Selecting previously unselected package libhts3t64:armhf. 383s Preparing to unpack .../53-libhts3t64_1.21+ds-1_armhf.deb ... 383s Unpacking libhts3t64:armhf (1.21+ds-1) ... 383s Selecting previously unselected package samtools. 383s Preparing to unpack .../54-samtools_1.21-1_armhf.deb ... 383s Unpacking samtools (1.21-1) ... 383s Selecting previously unselected package smalt. 383s Preparing to unpack .../55-smalt_0.7.6-13_armhf.deb ... 383s Unpacking smalt (0.7.6-13) ... 383s Selecting previously unselected package smalt-examples. 383s Preparing to unpack .../56-smalt-examples_0.7.6-13_all.deb ... 383s Unpacking smalt-examples (0.7.6-13) ... 384s Setting up libhtscodecs2:armhf (1.6.1-2) ... 384s Setting up libarchive-zip-perl (1.68-1) ... 384s Setting up libdebhelper-perl (13.24.1ubuntu2) ... 384s Setting up libdeflate0:armhf (1.23-1) ... 384s Setting up linux-libc-dev:armhf (6.14.0-10.10) ... 384s Setting up m4 (1.4.19-7) ... 384s Setting up libgomp1:armhf (15-20250222-0ubuntu1) ... 384s Setting up libdw1t64:armhf (0.192-4) ... 384s Setting up autotools-dev (20220109.1) ... 384s Setting up libpkgconf3:armhf (1.8.1-4) ... 384s Setting up rpcsvc-proto (1.4.2-0ubuntu7) ... 384s Setting up smalt-examples (0.7.6-13) ... 384s Setting up libbambamc0:armhf (0.0.50-6build1) ... 384s Setting up libmpc3:armhf (1.3.1-1build2) ... 384s Setting up autopoint (0.23.1-1) ... 384s Setting up pkgconf-bin (1.8.1-4) ... 384s Setting up autoconf (2.72-3ubuntu1) ... 384s Setting up libubsan1:armhf (15-20250222-0ubuntu1) ... 384s Setting up dwz (0.15-1build6) ... 384s Setting up libcrypt-dev:armhf (1:4.4.38-1) ... 384s Setting up libasan8:armhf (15-20250222-0ubuntu1) ... 384s Setting up debugedit (1:5.1-2) ... 384s Setting up libhts3t64:armhf (1.21+ds-1) ... 384s Setting up libgcc-14-dev:armhf (14.2.0-17ubuntu3) ... 384s Setting up libisl23:armhf (0.27-1) ... 384s Setting up libc-dev-bin (2.41-1ubuntu2) ... 384s Setting up libcc1-0:armhf (15-20250222-0ubuntu1) ... 384s Setting up cpp-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 384s Setting up automake (1:1.17-3ubuntu1) ... 384s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 384s Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... 384s Setting up smalt (0.7.6-13) ... 384s Setting up gettext (0.23.1-1) ... 384s Setting up gcc-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 384s Setting up pkgconf:armhf (1.8.1-4) ... 384s Setting up samtools (1.21-1) ... 384s Setting up intltool-debian (0.35.0+20060710.6) ... 384s Setting up pkg-config:armhf (1.8.1-4) ... 384s Setting up cpp-14 (14.2.0-17ubuntu3) ... 384s Setting up dh-strip-nondeterminism (1.14.1-2) ... 384s Setting up libc6-dev:armhf (2.41-1ubuntu2) ... 384s Setting up libstdc++-14-dev:armhf (14.2.0-17ubuntu3) ... 384s Setting up cpp-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 384s Setting up gcc-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 384s Setting up g++-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 384s Setting up po-debconf (1.0.21+nmu1) ... 384s Setting up gcc-14 (14.2.0-17ubuntu3) ... 384s Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 384s Setting up cpp (4:14.2.0-1ubuntu1) ... 384s Setting up g++-14 (14.2.0-17ubuntu3) ... 384s Setting up g++-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 384s Setting up libtool (2.5.4-4) ... 384s Setting up libbambamc-dev:armhf (0.0.50-6build1) ... 384s Setting up gcc (4:14.2.0-1ubuntu1) ... 384s Setting up dh-autoreconf (20) ... 384s Setting up g++ (4:14.2.0-1ubuntu1) ... 384s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 384s Setting up build-essential (12.10ubuntu1) ... 384s Setting up debhelper (13.24.1ubuntu2) ... 384s Processing triggers for install-info (7.1.1-1) ... 384s Processing triggers for libc-bin (2.41-1ubuntu2) ... 384s Processing triggers for man-db (2.13.0-1) ... 396s autopkgtest [17:49:09]: test run-unit-test: [----------------------- 398s /tmp/autopkgtest.O6Vk37/autopkgtest_tmp/SAM.py:5: SyntaxWarning: invalid escape sequence '\S' 398s SAMSTR = re.compile("^(\S+)\t(\d+)\t(\S+)\t(\d+)\t(\d+)\t(\S+)\t(\S+)\t"\ 398s /tmp/autopkgtest.O6Vk37/autopkgtest_tmp/SAM.py:6: SyntaxWarning: invalid escape sequence '\d' 398s "(\d+)\t([\+\-]*\d+)\t(\S+)\t(\S+)"\ 398s /tmp/autopkgtest.O6Vk37/autopkgtest_tmp/SAM.py:8: SyntaxWarning: invalid escape sequence '\S' 398s TAGSTR = re.compile("^(\S{2}):([iZ]):(\S+)") 398s /tmp/autopkgtest.O6Vk37/autopkgtest_tmp/SAM.py:13: SyntaxWarning: invalid escape sequence '\S' 398s QNAMSTR = re.compile("^(\S+)\/([12])$") 398s /tmp/autopkgtest.O6Vk37/autopkgtest_tmp/SAM.py:14: SyntaxWarning: invalid escape sequence '\d' 398s ALISCOR = re.compile("\tAS:i:(\d+)") 398s /tmp/autopkgtest.O6Vk37/autopkgtest_tmp/SAM.py:15: SyntaxWarning: invalid escape sequence '\d' 398s CLIPSTART = re.compile("^(\d+)([HS])") 398s /tmp/autopkgtest.O6Vk37/autopkgtest_tmp/SAM.py:16: SyntaxWarning: invalid escape sequence '\d' 398s CLIPEND = re.compile("(\d+)([HS])$") 596s /tmp/autopkgtest.O6Vk37/autopkgtest_tmp/formats.py:32: SyntaxWarning: invalid escape sequence '\d' 596s CIGARSTR = compile("^cigar:([ABCDNRSP]):(\d{2})\s+(\S+)\s+(\d+)\s+(\d+)\s+([*+-])\s+" \ 596s /tmp/autopkgtest.O6Vk37/autopkgtest_tmp/formats.py:33: SyntaxWarning: invalid escape sequence '\S' 596s "(\S+)\s+(\d+)\s+(\d+)\s+\+\s+(\d+)\s+(.+)$") 600s /tmp/autopkgtest.O6Vk37/autopkgtest_tmp/results_split_test.py:13: SyntaxWarning: invalid escape sequence '\d' 600s "Bbf^BcfBbdcfBdcfcddYbaB\dfYcc\ec_efeed\_cTebcacced"\ 600s /tmp/autopkgtest.O6Vk37/autopkgtest_tmp/results_split_test.py:14: SyntaxWarning: invalid escape sequence '\e' 600s "bebf`^fa^cV`fde^\ecc`d`cbccfeTbdbeZcefccf^fccbfBc!\n", 600s /tmp/autopkgtest.O6Vk37/autopkgtest_tmp/results_split_test.py:20: SyntaxWarning: invalid escape sequence '\`' 600s "edff^Yc^`dY`\\fefa^ddcYb^ef`adfdB\`f\`c`defce`adde!\n", 600s /tmp/autopkgtest.O6Vk37/autopkgtest_tmp/results_split_test.py:25: SyntaxWarning: invalid escape sequence '\B' 600s "Yfffcc\BYBf`dedBeeaZf^c^adff`BbfeTB_bdf\`YfdeBfBdd"\ 600s /tmp/autopkgtest.O6Vk37/autopkgtest_tmp/results_split_test.py:26: SyntaxWarning: invalid escape sequence '\e' 600s "eB_ae\eVff]dTedc_dcff^cVa_^d\\affdfdfddcadbbBT^fBd!\n", 600s /tmp/autopkgtest.O6Vk37/autopkgtest_tmp/results_split_test.py:32: SyntaxWarning: invalid escape sequence '\c' 600s "B``bdZffbeMUcUaTfeceb`V^fecaddde\cfW^de[Bececec`B!\n", 600s /tmp/autopkgtest.O6Vk37/autopkgtest_tmp/results_split_test.py:37: SyntaxWarning: invalid escape sequence '\e' 600s "daBZddeYdBfe`fBf`ecfdfcf`c\eacXdbLe^b``ccadK]e]^_T"\ 600s /tmp/autopkgtest.O6Vk37/autopkgtest_tmp/results_split_test.py:38: SyntaxWarning: invalid escape sequence '\T' 600s "fccbcd\Tffb^Yfdfdf^efa\[fbfdad`X\\Ue_^eBfcfcfNfdf^!\n" 726s autopkgtest [17:54:39]: test run-unit-test: -----------------------] 730s autopkgtest [17:54:43]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 730s run-unit-test PASS 733s autopkgtest [17:54:46]: @@@@@@@@@@@@@@@@@@@@ summary 733s run-unit-test PASS