0s autopkgtest [17:21:56]: starting date and time: 2025-03-15 17:21:56+0000 0s autopkgtest [17:21:56]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:21:56]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.h2pqzocf/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade scrappie --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.239 lxd-armhf-10.145.243.239:autopkgtest/ubuntu/plucky/armhf 24s autopkgtest [17:22:20]: testbed dpkg architecture: armhf 27s autopkgtest [17:22:23]: testbed apt version: 2.9.33 32s autopkgtest [17:22:28]: @@@@@@@@@@@@@@@@@@@@ test bed setup 34s autopkgtest [17:22:30]: testbed release detected to be: None 42s autopkgtest [17:22:38]: updating testbed package index (apt update) 44s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 45s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 45s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 45s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 45s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 45s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 45s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 46s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [114 kB] 46s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1832 B] 46s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 46s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [312 kB] 46s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [11.1 kB] 46s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 46s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 46s Get:15 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 47s Get:16 http://ftpmaster.internal/ubuntu plucky/main Sources [1394 kB] 48s Get:17 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 69s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 70s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 70s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 70s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 85s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 87s Fetched 41.0 MB in 43s (963 kB/s) 88s Reading package lists... 93s autopkgtest [17:23:29]: upgrading testbed (apt dist-upgrade and autopurge) 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 96s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 96s Starting 2 pkgProblemResolver with broken count: 0 96s Done 97s Entering ResolveByKeep 97s 97s Calculating upgrade... 98s The following packages will be upgraded: 98s libc-bin libc6 locales pinentry-curses python3-jinja2 sos strace 98s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 98s Need to get 8683 kB of archives. 98s After this operation, 23.6 kB of additional disk space will be used. 98s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 100s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 101s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 104s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 105s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 105s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 105s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 106s Preconfiguring packages ... 106s Fetched 8683 kB in 8s (1137 kB/s) 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 106s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 106s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 107s Setting up libc6:armhf (2.41-1ubuntu2) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 107s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 107s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 107s Setting up libc-bin (2.41-1ubuntu2) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 107s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 107s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 108s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 108s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 108s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 108s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 108s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 108s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 108s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 108s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 108s Setting up sos (4.9.0-5) ... 109s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 109s Setting up locales (2.41-1ubuntu2) ... 110s Generating locales (this might take a while)... 115s en_US.UTF-8... done 115s Generation complete. 115s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 115s Setting up strace (6.13+ds-1ubuntu1) ... 115s Processing triggers for man-db (2.13.0-1) ... 117s Processing triggers for systemd (257.3-1ubuntu3) ... 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 120s Starting pkgProblemResolver with broken count: 0 120s Starting 2 pkgProblemResolver with broken count: 0 120s Done 120s Solving dependencies... 121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s autopkgtest [17:23:59]: rebooting testbed after setup commands that affected boot 162s autopkgtest [17:24:38]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 186s autopkgtest [17:25:02]: @@@@@@@@@@@@@@@@@@@@ apt-source scrappie 218s Get:1 http://ftpmaster.internal/ubuntu plucky/universe scrappie 1.4.2-8build3 (dsc) [2184 B] 218s Get:2 http://ftpmaster.internal/ubuntu plucky/universe scrappie 1.4.2-8build3 (tar) [21.8 MB] 218s Get:3 http://ftpmaster.internal/ubuntu plucky/universe scrappie 1.4.2-8build3 (diff) [14.5 kB] 218s gpgv: Signature made Sun Jan 26 11:06:53 2025 UTC 218s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 218s gpgv: Can't check signature: No public key 218s dpkg-source: warning: cannot verify inline signature for ./scrappie_1.4.2-8build3.dsc: no acceptable signature found 219s autopkgtest [17:25:35]: testing package scrappie version 1.4.2-8build3 221s autopkgtest [17:25:37]: build not needed 225s autopkgtest [17:25:41]: test run-unit-test: preparing testbed 227s Reading package lists... 227s Building dependency tree... 227s Reading state information... 227s Starting pkgProblemResolver with broken count: 0 228s Starting 2 pkgProblemResolver with broken count: 0 228s Done 228s The following NEW packages will be installed: 228s libaec0 libblas3 libgomp1 libhdf5-310 libsz2 scrappie 229s 0 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. 229s Need to get 20.2 MB of archives. 229s After this operation, 26.7 MB of additional disk space will be used. 229s Get:1 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 229s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.1-2 [132 kB] 229s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 15-20250222-0ubuntu1 [128 kB] 229s Get:4 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 229s Get:5 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-310 armhf 1.14.5+repack-3 [1410 kB] 230s Get:6 http://ftpmaster.internal/ubuntu plucky/universe armhf scrappie armhf 1.4.2-8build3 [18.5 MB] 248s Fetched 20.2 MB in 20s (1026 kB/s) 248s Selecting previously unselected package libaec0:armhf. 249s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 249s Preparing to unpack .../0-libaec0_1.1.3-1_armhf.deb ... 249s Unpacking libaec0:armhf (1.1.3-1) ... 249s Selecting previously unselected package libblas3:armhf. 249s Preparing to unpack .../1-libblas3_3.12.1-2_armhf.deb ... 249s Unpacking libblas3:armhf (3.12.1-2) ... 249s Selecting previously unselected package libgomp1:armhf. 249s Preparing to unpack .../2-libgomp1_15-20250222-0ubuntu1_armhf.deb ... 249s Unpacking libgomp1:armhf (15-20250222-0ubuntu1) ... 249s Selecting previously unselected package libsz2:armhf. 249s Preparing to unpack .../3-libsz2_1.1.3-1_armhf.deb ... 249s Unpacking libsz2:armhf (1.1.3-1) ... 249s Selecting previously unselected package libhdf5-310:armhf. 249s Preparing to unpack .../4-libhdf5-310_1.14.5+repack-3_armhf.deb ... 249s Unpacking libhdf5-310:armhf (1.14.5+repack-3) ... 249s Selecting previously unselected package scrappie. 249s Preparing to unpack .../5-scrappie_1.4.2-8build3_armhf.deb ... 249s Unpacking scrappie (1.4.2-8build3) ... 249s Setting up libgomp1:armhf (15-20250222-0ubuntu1) ... 249s Setting up libaec0:armhf (1.1.3-1) ... 249s Setting up libblas3:armhf (3.12.1-2) ... 249s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 249s Setting up libsz2:armhf (1.1.3-1) ... 249s Setting up libhdf5-310:armhf (1.14.5+repack-3) ... 249s Setting up scrappie (1.4.2-8build3) ... 249s Processing triggers for man-db (2.13.0-1) ... 249s Processing triggers for libc-bin (2.41-1ubuntu2) ... 257s autopkgtest [17:26:13]: test run-unit-test: [----------------------- 259s Test functionality 259s Test 1 265s >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0%", "normalised_score" : 0.479833, "nblock" : 5778, "sequence_length" : 2448, "blocks_per_base" : 2.360294, "nsample" : 29150, "trim" : [ 200, 29090 ] } 265s PASS 265s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 265s Test 2 272s >read_ch228_file118.fast5 { "filename" : "read_ch228_file118.fast5", "uuid" : "e47468bf-12e3-4208-a866-babdd780e9c0%", "normalised_score" : 0.459902, "nevent" : 5787, "sequence_length" : 1695, "events_per_base" : 3.414159 } 272s PASS 272s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 272s Skip Test 3 on armhf (see bug #986307) 273s autopkgtest [17:26:29]: test run-unit-test: -----------------------] 277s autopkgtest [17:26:33]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 277s run-unit-test PASS 284s autopkgtest [17:26:40]: @@@@@@@@@@@@@@@@@@@@ summary 284s run-unit-test PASS