0s autopkgtest [17:18:12]: starting date and time: 2025-03-15 17:18:12+0000 0s autopkgtest [17:18:12]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:18:12]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.mki4oqdw/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade samblaster --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.142 lxd-armhf-10.145.243.142:autopkgtest/ubuntu/plucky/armhf 20s autopkgtest [17:18:32]: testbed dpkg architecture: armhf 22s autopkgtest [17:18:34]: testbed apt version: 2.9.33 25s autopkgtest [17:18:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup 27s autopkgtest [17:18:39]: testbed release detected to be: None 35s autopkgtest [17:18:47]: updating testbed package index (apt update) 36s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 37s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 37s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 37s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 37s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 37s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 38s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 38s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [114 kB] 38s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1832 B] 38s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 38s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [312 kB] 38s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [11.1 kB] 38s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 38s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 38s Get:15 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 56s Get:16 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 56s Get:17 http://ftpmaster.internal/ubuntu plucky/main Sources [1394 kB] 57s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 58s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 58s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 58s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 70s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 72s Fetched 41.0 MB in 36s (1150 kB/s) 73s Reading package lists... 79s autopkgtest [17:19:31]: upgrading testbed (apt dist-upgrade and autopurge) 81s Reading package lists... 81s Building dependency tree... 81s Reading state information... 82s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 82s Starting 2 pkgProblemResolver with broken count: 0 82s Done 83s Entering ResolveByKeep 83s 83s Calculating upgrade... 84s The following packages will be upgraded: 84s libc-bin libc6 locales pinentry-curses python3-jinja2 sos strace 84s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 84s Need to get 8683 kB of archives. 84s After this operation, 23.6 kB of additional disk space will be used. 84s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 86s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 87s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 90s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 91s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 91s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 91s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 91s Preconfiguring packages ... 92s Fetched 8683 kB in 7s (1185 kB/s) 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 92s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 92s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 92s Setting up libc6:armhf (2.41-1ubuntu2) ... 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 92s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 92s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 92s Setting up libc-bin (2.41-1ubuntu2) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 93s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 93s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 93s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 93s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 93s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 93s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 93s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 93s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 93s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 93s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 94s Setting up sos (4.9.0-5) ... 94s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 94s Setting up locales (2.41-1ubuntu2) ... 95s Generating locales (this might take a while)... 97s en_US.UTF-8... done 97s Generation complete. 97s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 97s Setting up strace (6.13+ds-1ubuntu1) ... 97s Processing triggers for man-db (2.13.0-1) ... 98s Processing triggers for systemd (257.3-1ubuntu3) ... 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 102s Starting pkgProblemResolver with broken count: 0 102s Starting 2 pkgProblemResolver with broken count: 0 102s Done 102s Solving dependencies... 103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 105s autopkgtest [17:19:57]: rebooting testbed after setup commands that affected boot 146s autopkgtest [17:20:38]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 172s autopkgtest [17:21:04]: @@@@@@@@@@@@@@@@@@@@ apt-source samblaster 182s Get:1 http://ftpmaster.internal/ubuntu plucky/universe samblaster 0.1.26-4 (dsc) [2029 B] 182s Get:2 http://ftpmaster.internal/ubuntu plucky/universe samblaster 0.1.26-4 (tar) [133 kB] 182s Get:3 http://ftpmaster.internal/ubuntu plucky/universe samblaster 0.1.26-4 (diff) [5256 B] 182s gpgv: Signature made Tue Dec 6 14:37:10 2022 UTC 182s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 182s gpgv: issuer "tille@debian.org" 182s gpgv: Can't check signature: No public key 182s dpkg-source: warning: cannot verify inline signature for ./samblaster_0.1.26-4.dsc: no acceptable signature found 182s autopkgtest [17:21:14]: testing package samblaster version 0.1.26-4 184s autopkgtest [17:21:16]: build not needed 186s autopkgtest [17:21:18]: test run-unit-test: preparing testbed 188s Reading package lists... 189s Building dependency tree... 189s Reading state information... 190s Starting pkgProblemResolver with broken count: 0 190s Starting 2 pkgProblemResolver with broken count: 0 190s Done 192s The following NEW packages will be installed: 192s libdeflate0 libhts3t64 libhtscodecs2 samblaster samtools 193s 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. 193s Need to get 1148 kB of archives. 193s After this operation, 2873 kB of additional disk space will be used. 193s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.23-1 [38.5 kB] 193s Get:2 http://ftpmaster.internal/ubuntu plucky/universe armhf libhtscodecs2 armhf 1.6.1-2 [67.5 kB] 193s Get:3 http://ftpmaster.internal/ubuntu plucky/universe armhf libhts3t64 armhf 1.21+ds-1 [399 kB] 193s Get:4 http://ftpmaster.internal/ubuntu plucky/universe armhf samblaster armhf 0.1.26-4 [24.4 kB] 193s Get:5 http://ftpmaster.internal/ubuntu plucky/universe armhf samtools armhf 1.21-1 [619 kB] 194s Fetched 1148 kB in 1s (1049 kB/s) 194s Selecting previously unselected package libdeflate0:armhf. 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 194s Preparing to unpack .../libdeflate0_1.23-1_armhf.deb ... 194s Unpacking libdeflate0:armhf (1.23-1) ... 194s Selecting previously unselected package libhtscodecs2:armhf. 194s Preparing to unpack .../libhtscodecs2_1.6.1-2_armhf.deb ... 194s Unpacking libhtscodecs2:armhf (1.6.1-2) ... 194s Selecting previously unselected package libhts3t64:armhf. 194s Preparing to unpack .../libhts3t64_1.21+ds-1_armhf.deb ... 194s Unpacking libhts3t64:armhf (1.21+ds-1) ... 194s Selecting previously unselected package samblaster. 194s Preparing to unpack .../samblaster_0.1.26-4_armhf.deb ... 194s Unpacking samblaster (0.1.26-4) ... 194s Selecting previously unselected package samtools. 194s Preparing to unpack .../samtools_1.21-1_armhf.deb ... 194s Unpacking samtools (1.21-1) ... 194s Setting up libhtscodecs2:armhf (1.6.1-2) ... 194s Setting up samblaster (0.1.26-4) ... 194s Setting up libdeflate0:armhf (1.23-1) ... 194s Setting up libhts3t64:armhf (1.21+ds-1) ... 194s Setting up samtools (1.21-1) ... 194s Processing triggers for man-db (2.13.0-1) ... 195s Processing triggers for libc-bin (2.41-1ubuntu2) ... 203s autopkgtest [17:21:35]: test run-unit-test: [----------------------- 205s samblaster: Version 0.1.26 205s samblaster: Opening read.sam for read. 205s samblaster: Opening output for write. 205s samblaster: Loaded 2 header sequence entries. 205s Unknown opcode 'P' in CIGAR string: '1S2I6M1P1I1P1I4M2I' 205s Unknown opcode 'P' in CIGAR string: '1S2I6M1P1I1P1I4M2I' 205s samblaster: Found 2 of 12 (16.667%) total read ids are marked paired yet are unmated. 205s samblaster: Please double check that input file is read-id (QNAME) grouped. 205s samblaster: Marked 0 of 12 (0.000%) total read ids as duplicates using 2432k memory in 0.000S CPU seconds and 0S wall time. 205s PASS Test 205s autopkgtest [17:21:37]: test run-unit-test: -----------------------] 209s run-unit-test PASS 209s autopkgtest [17:21:41]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 213s autopkgtest [17:21:45]: @@@@@@@@@@@@@@@@@@@@ summary 213s run-unit-test PASS