0s autopkgtest [16:53:24]: starting date and time: 2025-03-15 16:53:24+0000 0s autopkgtest [16:53:24]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [16:53:24]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.eoamo2n9/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade repeatmasker-recon --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.160 lxd-armhf-10.145.243.160:autopkgtest/ubuntu/plucky/armhf 20s autopkgtest [16:53:44]: testbed dpkg architecture: armhf 22s autopkgtest [16:53:46]: testbed apt version: 2.9.33 26s autopkgtest [16:53:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup 27s autopkgtest [16:53:51]: testbed release detected to be: None 35s autopkgtest [16:53:59]: updating testbed package index (apt update) 37s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 37s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 38s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 39s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 39s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 39s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 39s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 39s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [114 kB] 39s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1832 B] 39s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 39s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [312 kB] 39s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [11.1 kB] 39s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 39s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 39s Get:15 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 40s Get:16 http://ftpmaster.internal/ubuntu plucky/main Sources [1394 kB] 41s Get:17 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 67s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 69s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 69s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 69s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 92s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 94s Fetched 41.0 MB in 57s (720 kB/s) 95s Reading package lists... 101s autopkgtest [16:55:05]: upgrading testbed (apt dist-upgrade and autopurge) 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 104s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 104s Starting 2 pkgProblemResolver with broken count: 0 104s Done 104s Entering ResolveByKeep 105s 105s Calculating upgrade... 105s The following packages will be upgraded: 105s libc-bin libc6 locales pinentry-curses python3-jinja2 sos strace 106s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Need to get 8683 kB of archives. 106s After this operation, 23.6 kB of additional disk space will be used. 106s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 109s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 110s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 114s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 115s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 115s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 115s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 116s Preconfiguring packages ... 116s Fetched 8683 kB in 10s (865 kB/s) 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 116s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 116s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 116s Setting up libc6:armhf (2.41-1ubuntu2) ... 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 117s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 117s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 117s Setting up libc-bin (2.41-1ubuntu2) ... 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 117s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 117s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 117s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 117s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 117s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 117s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 117s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 117s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 117s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 118s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 118s Setting up sos (4.9.0-5) ... 118s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 118s Setting up locales (2.41-1ubuntu2) ... 120s Generating locales (this might take a while)... 121s en_US.UTF-8... done 121s Generation complete. 121s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 121s Setting up strace (6.13+ds-1ubuntu1) ... 121s Processing triggers for man-db (2.13.0-1) ... 122s Processing triggers for systemd (257.3-1ubuntu3) ... 125s Reading package lists... 125s Building dependency tree... 125s Reading state information... 125s Starting pkgProblemResolver with broken count: 0 125s Starting 2 pkgProblemResolver with broken count: 0 125s Done 126s Solving dependencies... 126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 129s autopkgtest [16:55:33]: rebooting testbed after setup commands that affected boot 176s autopkgtest [16:56:20]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 200s autopkgtest [16:56:44]: @@@@@@@@@@@@@@@@@@@@ apt-source repeatmasker-recon 210s Get:1 http://ftpmaster.internal/ubuntu plucky/universe repeatmasker-recon 1.08-8 (dsc) [2070 B] 210s Get:2 http://ftpmaster.internal/ubuntu plucky/universe repeatmasker-recon 1.08-8 (tar) [108 kB] 210s Get:3 http://ftpmaster.internal/ubuntu plucky/universe repeatmasker-recon 1.08-8 (diff) [5980 B] 210s gpgv: Signature made Wed Mar 13 15:02:02 2024 UTC 210s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 210s gpgv: Can't check signature: No public key 210s dpkg-source: warning: cannot verify inline signature for ./repeatmasker-recon_1.08-8.dsc: no acceptable signature found 210s autopkgtest [16:56:54]: testing package repeatmasker-recon version 1.08-8 212s autopkgtest [16:56:56]: build not needed 214s autopkgtest [16:56:58]: test run-unit-test: preparing testbed 216s Reading package lists... 216s Building dependency tree... 216s Reading state information... 216s Starting pkgProblemResolver with broken count: 0 216s Starting 2 pkgProblemResolver with broken count: 0 216s Done 217s The following NEW packages will be installed: 217s repeatmasker-recon 217s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 217s Need to get 87.1 kB of archives. 217s After this operation, 417 kB of additional disk space will be used. 217s Get:1 http://ftpmaster.internal/ubuntu plucky/universe armhf repeatmasker-recon armhf 1.08-8 [87.1 kB] 218s Fetched 87.1 kB in 0s (207 kB/s) 218s Selecting previously unselected package repeatmasker-recon. 218s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 218s Preparing to unpack .../repeatmasker-recon_1.08-8_armhf.deb ... 218s Unpacking repeatmasker-recon (1.08-8) ... 218s Setting up repeatmasker-recon (1.08-8) ... 218s Processing triggers for man-db (2.13.0-1) ... 227s autopkgtest [16:57:11]: test run-unit-test: [----------------------- 229s Test Functionality 231s 6 25 1 ChrI 11106918 11109261 231s 6 31 1 ChrI 12899689 12902031 231s 6 40 -1 ChrII 466064 468405 231s 6 49 -1 ChrII 3919509 3921851 231s 6 54 1 ChrII 7492066 7494410 231s 6 80 -1 ChrIV 1196892 1199236 231s 6 204 1 ChrI 457414 459757 231s 6 208 1 ChrI 9599189 9601530 231s 6 211 1 ChrII 15993 18334 231s 6 212 -1 ChrII 2961937 2964280 231s 6 213 -1 ChrII 3210897 3213240 231s 6 214 -1 ChrII 7068729 7071072 231s 6 218 -1 ChrIII 8134611 8136952 231s 6 219 -1 ChrIV 12305535 12307878 231s 6 220 -1 ChrIV 13517354 13519697 231s 6 223 1 ChrV 17019617 17021960 231s 6 224 -1 ChrV 18256414 18258756 231s 6 151 -1 ChrV 18594130 18595569 231s 6 225 -1 ChrV 18593379 18594138 231s 6 158 -1 ChrX 2879613 2880344 231s 6 30 1 ChrI 12640668 12640850 231s 6 157 -1 ChrX 2878776 2879615 231s 6 159 -1 ChrX 2880351 2880555 231s 6 210 -1 ChrI 12639993 12640540 231s 6 227 -1 ChrX 13552995 13553907 231s 6 186 -1 ChrX 13553906 13554422 231s PASS 232s autopkgtest [16:57:16]: test run-unit-test: -----------------------] 235s autopkgtest [16:57:19]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 235s run-unit-test PASS 239s autopkgtest [16:57:23]: @@@@@@@@@@@@@@@@@@@@ summary 239s run-unit-test PASS