0s autopkgtest [16:52:04]: starting date and time: 2025-03-15 16:52:04+0000 0s autopkgtest [16:52:04]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [16:52:04]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.nhpvfii1/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade readseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.197 lxd-armhf-10.145.243.197:autopkgtest/ubuntu/plucky/armhf 21s autopkgtest [16:52:25]: testbed dpkg architecture: armhf 23s autopkgtest [16:52:27]: testbed apt version: 2.9.33 27s autopkgtest [16:52:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup 29s autopkgtest [16:52:33]: testbed release detected to be: None 36s autopkgtest [16:52:40]: updating testbed package index (apt update) 38s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 39s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 39s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 39s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 39s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 40s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 40s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 40s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [114 kB] 40s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1832 B] 40s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 40s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [312 kB] 40s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [11.1 kB] 41s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 41s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 41s Get:15 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 41s Get:16 http://ftpmaster.internal/ubuntu plucky/main Sources [1394 kB] 42s Get:17 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 64s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 66s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 66s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 66s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 82s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 84s Fetched 41.0 MB in 46s (895 kB/s) 85s Reading package lists... 91s autopkgtest [16:53:35]: upgrading testbed (apt dist-upgrade and autopurge) 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 94s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 94s Starting 2 pkgProblemResolver with broken count: 0 94s Done 95s Entering ResolveByKeep 95s 95s Calculating upgrade... 96s The following packages will be upgraded: 96s libc-bin libc6 locales pinentry-curses python3-jinja2 sos strace 96s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s Need to get 8683 kB of archives. 96s After this operation, 23.6 kB of additional disk space will be used. 96s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 100s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 100s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 105s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 105s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 105s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 105s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 106s Preconfiguring packages ... 106s Fetched 8683 kB in 10s (912 kB/s) 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 106s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 106s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 107s Setting up libc6:armhf (2.41-1ubuntu2) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 107s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 107s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 107s Setting up libc-bin (2.41-1ubuntu2) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 107s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 107s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 108s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 108s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 108s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 108s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 108s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 108s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 108s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 108s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 108s Setting up sos (4.9.0-5) ... 109s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 109s Setting up locales (2.41-1ubuntu2) ... 110s Generating locales (this might take a while)... 112s en_US.UTF-8... done 112s Generation complete. 112s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 112s Setting up strace (6.13+ds-1ubuntu1) ... 112s Processing triggers for man-db (2.13.0-1) ... 113s Processing triggers for systemd (257.3-1ubuntu3) ... 115s Reading package lists... 116s Building dependency tree... 116s Reading state information... 116s Starting pkgProblemResolver with broken count: 0 116s Starting 2 pkgProblemResolver with broken count: 0 116s Done 117s Solving dependencies... 117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s autopkgtest [16:54:03]: rebooting testbed after setup commands that affected boot 160s autopkgtest [16:54:44]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 185s autopkgtest [16:55:09]: @@@@@@@@@@@@@@@@@@@@ apt-source readseq 195s Get:1 http://ftpmaster.internal/ubuntu plucky/universe readseq 1-15 (dsc) [2069 B] 195s Get:2 http://ftpmaster.internal/ubuntu plucky/universe readseq 1-15 (tar) [54.6 kB] 195s Get:3 http://ftpmaster.internal/ubuntu plucky/universe readseq 1-15 (diff) [18.1 kB] 195s gpgv: Signature made Thu Mar 14 21:24:13 2024 UTC 195s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 195s gpgv: issuer "emollier@debian.org" 195s gpgv: Can't check signature: No public key 195s dpkg-source: warning: cannot verify inline signature for ./readseq_1-15.dsc: no acceptable signature found 195s autopkgtest [16:55:19]: testing package readseq version 1-15 197s autopkgtest [16:55:21]: build not needed 200s autopkgtest [16:55:24]: test Makefile: preparing testbed 202s Reading package lists... 203s Building dependency tree... 203s Reading state information... 203s Starting pkgProblemResolver with broken count: 0 203s Starting 2 pkgProblemResolver with broken count: 0 203s Done 204s The following NEW packages will be installed: 204s libncbi6t64 ncbi-data readseq 204s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 204s Need to get 7669 kB of archives. 204s After this operation, 34.0 MB of additional disk space will be used. 204s Get:1 http://ftpmaster.internal/ubuntu plucky/universe armhf ncbi-data all 6.1.20170106+dfsg2-5 [3966 kB] 209s Get:2 http://ftpmaster.internal/ubuntu plucky/universe armhf libncbi6t64 armhf 6.1.20170106+dfsg2-5 [3649 kB] 213s Get:3 http://ftpmaster.internal/ubuntu plucky/universe armhf readseq armhf 1-15 [54.0 kB] 213s Fetched 7669 kB in 9s (843 kB/s) 213s Selecting previously unselected package ncbi-data. 213s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 213s Preparing to unpack .../ncbi-data_6.1.20170106+dfsg2-5_all.deb ... 213s Unpacking ncbi-data (6.1.20170106+dfsg2-5) ... 213s Selecting previously unselected package libncbi6t64:armhf. 214s Preparing to unpack .../libncbi6t64_6.1.20170106+dfsg2-5_armhf.deb ... 214s Unpacking libncbi6t64:armhf (6.1.20170106+dfsg2-5) ... 214s Selecting previously unselected package readseq. 214s Preparing to unpack .../readseq_1-15_armhf.deb ... 214s Unpacking readseq (1-15) ... 214s Setting up ncbi-data (6.1.20170106+dfsg2-5) ... 214s Setting up libncbi6t64:armhf (6.1.20170106+dfsg2-5) ... 214s Setting up readseq (1-15) ... 214s Processing triggers for man-db (2.13.0-1) ... 214s Processing triggers for libc-bin (2.41-1ubuntu2) ... 222s autopkgtest [16:55:46]: test Makefile: [----------------------- 226s 226s Test for general read/write of all chars: 226s /usr/bin/readseq -p alphabet.std -otest.alpha 226s diff test.alpha alphabet.std 226s 226s Test for valid format conversions: 226s /usr/bin/readseq -v -p -f=ig nucleic.std -otest.ig 226s Sequence 1, length= 228, checksum= 1B5655D0, format= 20. Vienna, id= nucleic/amino test 226s /usr/bin/readseq -v -p -f=gb test.ig -otest.gb 226s /usr/bin/readseq -v -p -f=nbrf test.gb -otest.nbrf 226s Sequence 1, length= 228, checksum= 1B5655D0, format= 1. IG/Stanford, id= nucleic/amino 226s Sequence 1, length= 228, checksum= 1B5655D0, format= 2. GenBank/GB, id= nucleic/amino 228 bp 226s /usr/bin/readseq -v -p -f=embl test.nbrf -otest.embl 226s Sequence 1, length= 228, checksum= 1B5655D0, format= 3. NBRF, id= nucleic/amino 226s /usr/bin/readseq -v -p -f=gcg test.embl -otest.gcg 226s Sequence 1, length= 228, checksum= 1B5655D0, format= 4. EMBL, id= nucleic/amino 226s Sequence 1, length= 228, checksum= 1B5655D0, format= 5. GCG, id= nucleic/amino 226s Sequence 1, length= 228, checksum= 1B5655D0, format= 6. DNAStrider, id= nucleic/amino, 228 bases, 1B5655D0 checksum. 226s Sequence 1, length= 228, checksum= 1B5655D0, format= 7. Fitch, id= nucleic/amino, 228 bases, 1B5655D0 checksum. 226s Sequence 1, length= 228, checksum= 1B5655D0, format= 8. Pearson/Fasta, id= nucleic/amino, 228 bases, 1B5655D0 checksum. 226s Sequence 1, length= 228, checksum= 1B5655D0, format= 14. PIR/CODATA, id= nucleic/amino, 226s /usr/bin/readseq -v -p -f=strider test.gcg -otest.strider 226s /usr/bin/readseq -v -p -f=fitch test.strider -otest.fitch 226s /usr/bin/readseq -v -p -f=fasta test.fitch -otest.fasta 226s /usr/bin/readseq -v -p -f=pir test.fasta -otest.pir 226s /usr/bin/readseq -v -p -f=ig test.pir -otest.ig-b 226s diff test.ig test.ig-b 226s 1,2c1,2 226s < ;nucleic/amino test, 228 bases, 1B5655D0 checksum. 226s < nucleic/amino 226s --- 226s > ;nucleic/amino, , 228 bases, 1B5655D0 checksum. 226s > nucleic/amino, 226s 226s Test for multiple-sequence format conversions: 226s /usr/bin/readseq -p -f=ig multi.std -otest.m-ig 226s /usr/bin/readseq -p -f=gb test.m-ig -otest.m-gb 226s /usr/bin/readseq -p -f=nbrf test.m-gb -otest.m-nbrf 226s /usr/bin/readseq -p -f=embl test.m-nbrf -otest.m-embl 226s /usr/bin/readseq -p -f=fasta test.m-embl -otest.m-fasta 226s /usr/bin/readseq -p -f=pir test.m-fasta -otest.m-pir 226s /usr/bin/readseq -p -f=msf test.m-pir -otest.m-msf 226s /usr/bin/readseq -p -f=paup test.m-msf -otest.m-paup 226s /usr/bin/readseq -p -f=ig test.m-paup -otest.m-ig-b 226s diff test.m-ig test.m-ig-b 226s 1,2c1,2 226s < ;acarr58sst , 183 bases, 64754A4D checksum. 226s < acarr58sst 226s --- 226s > ;acarr58ss, 183 bases, 64754A4D checksum. 226s > acarr58ss 226s 7c7 226s < ;amgrrbst , 183 bases, C886D2FB checksum. 226s --- 226s > ;amgrrbst, 183 bases, C886D2FB checksum. 226s 13c13 226s < ;bmorrbst , 183 bases, 3E9C23D6 checksum. 226s --- 226s > ;bmorrbst, 183 bases, 3E9C23D6 checksum. 226s 19c19 226s < ;crerrbst , 183 bases, AC88A337 checksum. 226s --- 226s > ;crerrbst, 183 bases, AC88A337 checksum. 226s 25,26c25,26 226s < ;ddirr58sst , 183 bases, 1E3D23B8 checksum. 226s < ddirr58sst 226s --- 226s > ;ddirr58ss, 183 bases, 1E3D23B8 checksum. 226s > ddirr58ss 226s 226s Expect differences in the header lines due to 226s different format headers. If any sequence lines 226s differ, or if the checksums differ, there is a problem. 226s ---------------------- 226s make: [/tmp/autopkgtest.3tyEX2/build.3Jh/src/debian/tests/Makefile:26: test] Error 1 (ignored) 226s make: [/tmp/autopkgtest.3tyEX2/build.3Jh/src/debian/tests/Makefile:38: test] Error 1 (ignored) 226s 226s To clean up test files, command me: 226s make clean 226s autopkgtest [16:55:50]: test Makefile: -----------------------] 230s autopkgtest [16:55:54]: test Makefile: - - - - - - - - - - results - - - - - - - - - - 230s Makefile PASS 235s autopkgtest [16:55:59]: @@@@@@@@@@@@@@@@@@@@ summary 235s Makefile PASS