0s autopkgtest [16:39:52]: starting date and time: 2025-03-15 16:39:52+0000 0s autopkgtest [16:39:52]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [16:39:52]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.c12jh3it/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-spatstat.univar --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.58 lxd-armhf-10.145.243.58:autopkgtest/ubuntu/plucky/armhf 27s autopkgtest [16:40:19]: testbed dpkg architecture: armhf 29s autopkgtest [16:40:21]: testbed apt version: 2.9.33 33s autopkgtest [16:40:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 34s autopkgtest [16:40:26]: testbed release detected to be: None 42s autopkgtest [16:40:34]: updating testbed package index (apt update) 44s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 44s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 45s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 45s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 45s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 45s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 45s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 45s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [114 kB] 45s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1832 B] 45s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 45s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [312 kB] 46s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [11.1 kB] 46s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 46s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 46s Get:15 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 46s Get:16 http://ftpmaster.internal/ubuntu plucky/main Sources [1394 kB] 47s Get:17 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 69s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 71s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 71s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 71s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 87s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 89s Fetched 41.0 MB in 45s (912 kB/s) 91s Reading package lists... 96s autopkgtest [16:41:28]: upgrading testbed (apt dist-upgrade and autopurge) 98s Reading package lists... 99s Building dependency tree... 99s Reading state information... 100s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 100s Starting 2 pkgProblemResolver with broken count: 0 100s Done 102s Entering ResolveByKeep 102s 103s Calculating upgrade... 104s The following packages will be upgraded: 104s libc-bin libc6 locales pinentry-curses python3-jinja2 sos strace 104s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s Need to get 8683 kB of archives. 104s After this operation, 23.6 kB of additional disk space will be used. 104s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 107s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 108s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 112s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 113s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 113s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 113s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 114s Preconfiguring packages ... 114s Fetched 8683 kB in 9s (915 kB/s) 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 115s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 115s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 115s Setting up libc6:armhf (2.41-1ubuntu2) ... 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 115s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 115s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 115s Setting up libc-bin (2.41-1ubuntu2) ... 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 116s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 116s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 116s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 116s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 116s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 116s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 116s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 116s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 117s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 117s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 117s Setting up sos (4.9.0-5) ... 118s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 118s Setting up locales (2.41-1ubuntu2) ... 119s Generating locales (this might take a while)... 123s en_US.UTF-8... done 123s Generation complete. 123s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 124s Setting up strace (6.13+ds-1ubuntu1) ... 124s Processing triggers for man-db (2.13.0-1) ... 125s Processing triggers for systemd (257.3-1ubuntu3) ... 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 129s Starting pkgProblemResolver with broken count: 0 129s Starting 2 pkgProblemResolver with broken count: 0 129s Done 130s Solving dependencies... 131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s autopkgtest [16:42:05]: rebooting testbed after setup commands that affected boot 172s autopkgtest [16:42:44]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 196s autopkgtest [16:43:08]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-spatstat.univar 207s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.univar 3.1-1-1build1 (dsc) [2194 B] 207s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.univar 3.1-1-1build1 (tar) [67.9 kB] 207s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.univar 3.1-1-1build1 (diff) [3172 B] 207s gpgv: Signature made Sat Feb 22 20:26:45 2025 UTC 207s gpgv: using RSA key 5C7ABEA20F8630459CC8C8B5E27F2CF8458C2FA4 207s gpgv: Can't check signature: No public key 207s dpkg-source: warning: cannot verify inline signature for ./r-cran-spatstat.univar_3.1-1-1build1.dsc: no acceptable signature found 207s autopkgtest [16:43:19]: testing package r-cran-spatstat.univar version 3.1-1-1build1 209s autopkgtest [16:43:21]: build not needed 213s autopkgtest [16:43:25]: test run-unit-test: preparing testbed 214s Reading package lists... 215s Building dependency tree... 215s Reading state information... 216s Starting pkgProblemResolver with broken count: 0 216s Starting 2 pkgProblemResolver with broken count: 0 216s Done 218s The following NEW packages will be installed: 218s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 218s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgfortran5 218s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 218s libjpeg8 liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 218s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 218s libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 218s libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 r-base-core 218s r-cran-spatstat.univar r-cran-spatstat.utils unzip x11-common xdg-utils zip 218s 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. 218s Need to get 38.3 MB of archives. 218s After this operation, 71.3 MB of additional disk space will be used. 218s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 219s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 219s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 220s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-2ubuntu1 [37.5 kB] 220s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-2ubuntu1 [114 kB] 220s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig armhf 2.15.0-2ubuntu1 [190 kB] 220s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.1-2 [132 kB] 220s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 221s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 221s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 221s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 221s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB] 221s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libdatrie1 armhf 0.2.13-3build1 [15.7 kB] 221s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.23-1 [38.5 kB] 221s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 15-20250222-0ubuntu1 [330 kB] 221s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 15-20250222-0ubuntu1 [128 kB] 222s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 222s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.2.0-1 [464 kB] 222s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 222s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libice6 armhf 2:1.1.1-1 [36.5 kB] 222s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 222s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 222s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.1-2 [2091 kB] 224s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 224s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libthai-data all 0.1.29-2build1 [158 kB] 224s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libthai0 armhf 0.1.29-2build1 [15.2 kB] 224s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libpango-1.0-0 armhf 1.56.2-1 [216 kB] 225s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libpangoft2-1.0-0 armhf 1.56.2-1 [43.6 kB] 225s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libpangocairo-1.0-0 armhf 1.56.2-1 [25.1 kB] 225s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libpaper2 armhf 2.2.5-0.3 [16.3 kB] 225s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libpaper-utils armhf 2.2.5-0.3 [14.2 kB] 225s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 225s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libsm6 armhf 2:1.2.4-1 [15.1 kB] 225s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libtcl8.6 armhf 8.6.16+dfsg-1 [909 kB] 226s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 226s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 226s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 226s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 226s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 226s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libtk8.6 armhf 8.6.16-1 [686 kB] 226s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libxt6t64 armhf 1:1.2.1-1.2build1 [145 kB] 227s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf zip armhf 3.0-14ubuntu2 [164 kB] 227s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf unzip armhf 6.0-28ubuntu6 [167 kB] 227s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 227s Get:45 http://ftpmaster.internal/ubuntu plucky/universe armhf r-base-core armhf 4.4.3-1 [28.2 MB] 255s Get:46 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-spatstat.utils armhf 3.1-2-1 [379 kB] 255s Get:47 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-spatstat.univar armhf 3.1-1-1build1 [305 kB] 256s Preconfiguring packages ... 256s Fetched 38.3 MB in 38s (1016 kB/s) 256s Selecting previously unselected package libfreetype6:armhf. 256s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 256s Preparing to unpack .../00-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 256s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 256s Selecting previously unselected package fonts-dejavu-mono. 256s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 256s Unpacking fonts-dejavu-mono (2.37-8) ... 257s Selecting previously unselected package fonts-dejavu-core. 257s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 257s Unpacking fonts-dejavu-core (2.37-8) ... 257s Selecting previously unselected package fontconfig-config. 257s Preparing to unpack .../03-fontconfig-config_2.15.0-2ubuntu1_armhf.deb ... 257s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 257s Selecting previously unselected package libfontconfig1:armhf. 257s Preparing to unpack .../04-libfontconfig1_2.15.0-2ubuntu1_armhf.deb ... 257s Unpacking libfontconfig1:armhf (2.15.0-2ubuntu1) ... 257s Selecting previously unselected package fontconfig. 257s Preparing to unpack .../05-fontconfig_2.15.0-2ubuntu1_armhf.deb ... 257s Unpacking fontconfig (2.15.0-2ubuntu1) ... 257s Selecting previously unselected package libblas3:armhf. 257s Preparing to unpack .../06-libblas3_3.12.1-2_armhf.deb ... 257s Unpacking libblas3:armhf (3.12.1-2) ... 257s Selecting previously unselected package libpixman-1-0:armhf. 257s Preparing to unpack .../07-libpixman-1-0_0.44.0-3_armhf.deb ... 257s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 257s Selecting previously unselected package libxcb-render0:armhf. 257s Preparing to unpack .../08-libxcb-render0_1.17.0-2_armhf.deb ... 257s Unpacking libxcb-render0:armhf (1.17.0-2) ... 257s Selecting previously unselected package libxcb-shm0:armhf. 257s Preparing to unpack .../09-libxcb-shm0_1.17.0-2_armhf.deb ... 257s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 257s Selecting previously unselected package libxrender1:armhf. 257s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 257s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 257s Selecting previously unselected package libcairo2:armhf. 257s Preparing to unpack .../11-libcairo2_1.18.2-2_armhf.deb ... 257s Unpacking libcairo2:armhf (1.18.2-2) ... 257s Selecting previously unselected package libdatrie1:armhf. 257s Preparing to unpack .../12-libdatrie1_0.2.13-3build1_armhf.deb ... 257s Unpacking libdatrie1:armhf (0.2.13-3build1) ... 257s Selecting previously unselected package libdeflate0:armhf. 258s Preparing to unpack .../13-libdeflate0_1.23-1_armhf.deb ... 258s Unpacking libdeflate0:armhf (1.23-1) ... 258s Selecting previously unselected package libgfortran5:armhf. 258s Preparing to unpack .../14-libgfortran5_15-20250222-0ubuntu1_armhf.deb ... 258s Unpacking libgfortran5:armhf (15-20250222-0ubuntu1) ... 258s Selecting previously unselected package libgomp1:armhf. 258s Preparing to unpack .../15-libgomp1_15-20250222-0ubuntu1_armhf.deb ... 258s Unpacking libgomp1:armhf (15-20250222-0ubuntu1) ... 258s Selecting previously unselected package libgraphite2-3:armhf. 258s Preparing to unpack .../16-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 258s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 258s Selecting previously unselected package libharfbuzz0b:armhf. 258s Preparing to unpack .../17-libharfbuzz0b_10.2.0-1_armhf.deb ... 258s Unpacking libharfbuzz0b:armhf (10.2.0-1) ... 258s Selecting previously unselected package x11-common. 258s Preparing to unpack .../18-x11-common_1%3a7.7+23ubuntu3_all.deb ... 258s Unpacking x11-common (1:7.7+23ubuntu3) ... 258s Selecting previously unselected package libice6:armhf. 258s Preparing to unpack .../19-libice6_2%3a1.1.1-1_armhf.deb ... 258s Unpacking libice6:armhf (2:1.1.1-1) ... 258s Selecting previously unselected package libjpeg-turbo8:armhf. 258s Preparing to unpack .../20-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 258s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 258s Selecting previously unselected package libjpeg8:armhf. 258s Preparing to unpack .../21-libjpeg8_8c-2ubuntu11_armhf.deb ... 258s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 258s Selecting previously unselected package liblapack3:armhf. 258s Preparing to unpack .../22-liblapack3_3.12.1-2_armhf.deb ... 258s Unpacking liblapack3:armhf (3.12.1-2) ... 258s Selecting previously unselected package liblerc4:armhf. 258s Preparing to unpack .../23-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 258s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 258s Selecting previously unselected package libthai-data. 258s Preparing to unpack .../24-libthai-data_0.1.29-2build1_all.deb ... 258s Unpacking libthai-data (0.1.29-2build1) ... 258s Selecting previously unselected package libthai0:armhf. 258s Preparing to unpack .../25-libthai0_0.1.29-2build1_armhf.deb ... 258s Unpacking libthai0:armhf (0.1.29-2build1) ... 258s Selecting previously unselected package libpango-1.0-0:armhf. 258s Preparing to unpack .../26-libpango-1.0-0_1.56.2-1_armhf.deb ... 258s Unpacking libpango-1.0-0:armhf (1.56.2-1) ... 258s Selecting previously unselected package libpangoft2-1.0-0:armhf. 258s Preparing to unpack .../27-libpangoft2-1.0-0_1.56.2-1_armhf.deb ... 258s Unpacking libpangoft2-1.0-0:armhf (1.56.2-1) ... 258s Selecting previously unselected package libpangocairo-1.0-0:armhf. 258s Preparing to unpack .../28-libpangocairo-1.0-0_1.56.2-1_armhf.deb ... 258s Unpacking libpangocairo-1.0-0:armhf (1.56.2-1) ... 258s Selecting previously 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(4.4.3-1) ... 263s Creating config file /etc/R/Renviron with new version 264s Setting up r-cran-spatstat.utils (3.1-2-1) ... 264s Setting up r-cran-spatstat.univar (3.1-1-1build1) ... 264s Processing triggers for man-db (2.13.0-1) ... 264s Processing triggers for install-info (7.1.1-1) ... 264s Processing triggers for libc-bin (2.41-1ubuntu2) ... 272s autopkgtest [16:44:24]: test run-unit-test: [----------------------- 274s BEGIN TEST all.R 274s 274s R version 4.4.3 (2025-02-28) -- "Trophy Case" 274s Copyright (C) 2025 The R Foundation for Statistical Computing 274s Platform: arm-unknown-linux-gnueabihf (32-bit) 274s 274s R is free software and comes with ABSOLUTELY NO WARRANTY. 274s You are welcome to redistribute it under certain conditions. 274s Type 'license()' or 'licence()' for distribution details. 274s 274s R is a collaborative project with many contributors. 274s Type 'contributors()' for more information and 274s 'citation()' on how to cite R or R packages in publications. 274s 274s Type 'demo()' for some demos, 'help()' for on-line help, or 274s 'help.start()' for an HTML browser interface to help. 274s Type 'q()' to quit R. 274s 275s > #' 275s > #' Header for all (concatenated) test files 275s > #' 275s > #' Require spatstat.univar 275s > #' Obtain environment variable controlling tests. 275s > #' 275s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 275s > 275s > require(spatstat.univar) 275s Loading required package: spatstat.univar 275s spatstat.univar 3.1-1 275s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 275s > ALWAYS <- TRUE 275s > cat(paste("--------- Executing", 275s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 275s + "test code -----------\n")) 275s --------- Executing **RESTRICTED** subset of test code ----------- 275s > # tests/weightedstats.R 275s > # $Revision: 1.2 $ $Date: 2023/11/05 01:40:53 $ 275s > 275s > local({ 275s + if(ALWAYS) { # depends on hardware 275s + ## whist() 275s + ## check agreement between C and interpreted code for whist() 275s + set.seed(98123) 275s + x <- runif(1000) 275s + w <- sample(1:5, 1000, replace=TRUE) 275s + b <- seq(0,1,length=101) 275s + aC <- whist(x,b,w, method="C") 275s + aR <- whist(x,b,w, method="interpreted") 275s + if(!all(aC == aR)) 275s + stop("Algorithms for whist disagree") 275s + } 275s + if(FULLTEST) { 275s + ## cases of 'unnormdensity()' 275s + x <- rnorm(20) 275s + d0 <- unnormdensity(x, weights=rep(0, 20)) 275s + dneg <- unnormdensity(x, weights=c(-runif(19), 0)) 275s + } 275s + 275s + }) 275s > 275s > #' 275s > #' tests/parzen.R 275s > #' 275s > #' Tests of the Parzen-Rosenblatt estimator 275s > #' (fixed bandwidth, no boundary correction) 275s > #' 275s > #' $Revision: 1.1 $ $Date: 2023/10/22 02:39:49 $ 275s > 275s > local({ 275s + if(FULLTEST) { 275s + #' code in kernels.R 275s + kernames <- c("gaussian", "rectangular", "triangular", 275s + "epanechnikov", "biweight", "cosine", "optcosine") 275s + X <- rnorm(20) 275s + U <- runif(20) 275s + for(ker in kernames) { 275s + dX <- dkernel(X, ker) 275s + fX <- pkernel(X, ker) 275s + qU <- qkernel(U, ker) 275s + m0 <- kernel.moment(0, 0, ker) 275s + m1 <- kernel.moment(1, 0, ker) 275s + m2 <- kernel.moment(2, 0, ker) 275s + m3 <- kernel.moment(3, 0, ker) 275s + fa <- kernel.factor(ker) 275s + sq <- kernel.squint(ker) 275s + } 275s + } 275s + }) 275s > 275s > local({ 275s + if(ALWAYS) { 275s + ## unnormdensity 275s + x <- rnorm(20) 275s + d0 <- unnormdensity(x, weights=rep(0, 20)) 275s + dneg <- unnormdensity(x, weights=c(-runif(19), 0)) 275s + } 275s + }) 275s > # 275s > # tests/NAinCov.R 275s > # 275s > # Testing the response to the presence of NA's in covariates 275s > # 275s > # $Revision: 1.10 $ $Date: 2024/09/30 23:13:54 $ 275s > 275s > if(FULLTEST) { 275s + local({ 275s + #' quantile.ewcdf 275s + f <- ewcdf(runif(100), runif(100)) 275s + qf <- quantile(f, probs=c(0.1, NA, 0.8)) 275s + #' quantile.density 275s + f <- density(runif(100)) 275s + qf <- quantile(f, probs=c(0.1, NA, 0.8)) 275s + }) 275s + } 275s > 275s > #' tests/direct.R 275s > #' 275s > #' Check output of densityBC() by comparing with 275s > #' kernel estimates computed directly in R code. 275s > #' 275s > #' $Revision: 1.2 $ $Date: 2023/10/22 02:39:35 $ 275s > 275s > INTERACTIVE <- FALSE 275s > 275s > #' ...... direct implementation ........................ 275s > #' 275s > #' Biweight boundary kernel (for estimation at point r) 275s > 275s > bdry.bwt <- function(x,r,h=1){ 275s + u <- x/h 275s + k <- (15/(16*h))*(1-u^2)^2*(u^2<1) 275s + p <- r/h 275s + p[p>1] <- 1 275s + a0 <- (3*p^5 - 10*p^3 + 15*p + 8)/16 275s + a1 <- (5*p^6 - 15*p^4 + 15*p^2 -5)/32 275s + a2 <- (15*p^7 - 42*p^5 + 35*p^3 + 8)/112 275s + bk <- (a2-a1*u)*k*(u 275s > #' Standard biweight kernel 275s > 275s > bwt <- function(x,r,h=1){ 275s + # r is ignored 275s + u <- x/h 275s + k <- (15/(16*h))*(1-u^2)^2*(u^2<1) 275s + k 275s + } 275s > 275s > #' Kernel estimate 275s > 275s > kernR <- function(x, h, kname="bwt", from, to, nr=200) { 275s + ker <- get(kname, mode="function") 275s + fhat <- numeric(0) 275s + rvalues <- seq(from, to, length=nr) 275s + for (r in rvalues) 275s + fhat <- c(fhat,mean(ker(r-x, r, h=h))) 275s + return(list(x=rvalues, y=fhat)) 275s + } 275s > 275s > #' ...................... RUN EXAMPLE ....................... 275s > 275s > sim.dat <- rexp(500) 275s > 275s > from <- 0.01 275s > to <- 5 275s > nr <- 200 275s > 275s > if(INTERACTIVE) opa <- par(ask=TRUE) 275s > 275s > cat("--- Fixed bandwidth ---\n") 275s --- Fixed bandwidth --- 275s > 275s > fhatR <- kernR(sim.dat, 0.4, "bwt", from=from, to=to, nr=nr) 275s > fhatC <- densityBC(sim.dat, "biweight", h=0.4, from=from, to=to, n=nr) 275s > 275s > stopifnot(length(fhatR$x) == length(fhatC$x)) 275s > stopifnot(all(fhatR$x == fhatC$x)) 275s > rvalues <- fhatR$x 275s > ftrue <- dexp(rvalues) 275s > 275s > if(INTERACTIVE) { 275s + plot(c(from, to), c(0, 1.1), type="n", xlab="r", ylab="density", 275s + main="Fixed bandwidth") 275s + lines(rvalues, fhatR$y, col=1) 275s + lines(rvalues, fhatC$x, col=2) 275s + lines(rvalues, ftrue, col=3) 275s + } 275s > 275s > cat("Range of absolute discrepancies between estimates (fixed bandwidth):\n") 275s Range of absolute discrepancies between estimates (fixed bandwidth): 275s > print(range(fhatC$y - fhatR$y)) 275s [1] -6.661338e-16 4.440892e-16 275s > 275s > cat("\n--- Boundary kernel ---\n") 275s 275s --- Boundary kernel --- 275s > 275s > fhat.R <- kernR(sim.dat, 0.4, "bdry.bwt", from=from, to=to, nr=nr) 275s > fhat.C <- densityBC(sim.dat, "biweight", h=0.4, from=from, to=to, n=nr, 275s + zerocor="bdrykern") 275s > 275s > stopifnot(length(fhat.R$x) == length(fhat.C$x)) 275s > stopifnot(all(fhat.R$x == fhat.C$x)) 275s > 275s > rvalues <- fhat.R$x 275s > ftrue <- dexp(rvalues) 275s > 275s > if(INTERACTIVE) { 275s + plot(c(from, to), c(0, 1.1), type="n", xlab="r", ylab="density", 275s + main="Boundary kernel") 275s + lines(rvalues, fhat.R$y, col=1) 275s + lines(rvalues, fhat.C$y, col=2) 275s + lines(rvalues, ftrue, col=3) 275s + } 275s > 275s > cat("Range of absolute discrepancies between estimates (boundary kernel):\n") 275s Range of absolute discrepancies between estimates (boundary kernel): 275s > print(range(fhat.C$y - fhat.R$y)) 275s [1] -7.771561e-16 4.440892e-16 275s > 275s > rel.discrep <- (fhat.C$y - fhat.R$y)/ftrue 275s > rel.discrep <- rel.discrep[ftrue > 0.1] 275s > cat("Range of relative discrepancies between estimates (boundary kernel):\n") 275s Range of relative discrepancies between estimates (boundary kernel): 275s > print(range(rel.discrep)) 275s [1] -1.330394e-15 1.061620e-15 275s > if(max(abs(rel.discrep)) > 0.01) 275s + stop("Relative discrepancies between C and R code exceed 1 percent") 275s > 275s > if(INTERACTIVE) par(opa) 275s > 275s > #' tests/kermom.R 275s > #' 275s > #' Check R function kernel.moment() against C function kermom () 275s > #' 275s > #' $Revision: 1.2 $ $Date: 2024/10/31 10:36:27 $ 275s > #' 275s > 275s > moo <- 1 275s > sdee <- 0.5 275s > xx <- seq(moo - 4 * sdee, moo + 4 * sdee, length=512) 275s > 275s > kernames <- c("gaussian", "rectangular", "triangular", 275s + "epanechnikov", "biweight", "cosine", "optcosine") 275s > 275s > eps <- sqrt(.Machine$double.eps) 275s > 275s > for(m in 0:2) { 275s + cat("Incomplete moment of order", m, fill=TRUE) 275s + for(ker in kernames) { 275s + Rvalues <- kernel.moment(m, xx, ker, mean=moo, sd=sdee) 275s + Cvalues <- kermom(m, xx, ker, mean=moo, sd=sdee) 275s + discrep <- max(abs(Rvalues-Cvalues)) 275s + if(discrep > eps) 275s + stop(paste("kernel.moment and kermom disagree", 275s + "for m =", m, "for kernel", sQuote(ker), 275s + "\n\tDiscrepancy", discrep)) 275s + cat("Kernel", sQuote(ker), "\tdiscrepancy", discrep, fill=TRUE) 275s + } 275s + } 275s Incomplete moment of order 0 275s Kernel ‘gaussian’ discrepancy 0 275s Kernel ‘rectangular’ discrepancy 0 275s Kernel ‘triangular’ discrepancy 2.220446e-16 275s Kernel ‘epanechnikov’ discrepancy 1.110223e-16 275s Kernel ‘biweight’ discrepancy 1.110223e-16 275s Kernel ‘cosine’ discrepancy 0 275s Kernel ‘optcosine’ discrepancy 0 275s Incomplete moment of order 1 275s Kernel ‘gaussian’ discrepancy 0 275s Kernel ‘rectangular’ discrepancy 0 275s Kernel ‘triangular’ discrepancy 3.330669e-16 275s Kernel ‘epanechnikov’ discrepancy 2.220446e-16 275s Kernel ‘biweight’ discrepancy 2.220446e-16 275s Kernel ‘cosine’ discrepancy 2.333721e-17 275s Kernel ‘optcosine’ discrepancy 0 275s Incomplete moment of order 2 275s Kernel ‘gaussian’ discrepancy 0 275s Kernel ‘rectangular’ discrepancy 2.220446e-16 275s Kernel ‘triangular’ discrepancy 4.440892e-16 275s Kernel ‘epanechnikov’ discrepancy 4.440892e-16 275s Kernel ‘biweight’ discrepancy 4.440892e-16 275s Kernel ‘cosine’ discrepancy 2.220446e-16 275s Kernel ‘optcosine’ discrepancy 5.938278e-17 275s > 275s autopkgtest [16:44:27]: test run-unit-test: -----------------------] 279s run-unit-test PASS 279s autopkgtest [16:44:31]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 283s autopkgtest [16:44:35]: test pkg-r-autopkgtest: preparing testbed 285s Reading package lists... 285s Building dependency tree... 285s Reading state information... 286s Starting pkgProblemResolver with broken count: 0 286s Starting 2 pkgProblemResolver with broken count: 0 286s Done 288s The following NEW packages will be installed: 288s build-essential cpp cpp-14 cpp-14-arm-linux-gnueabihf 288s cpp-arm-linux-gnueabihf dctrl-tools g++ g++-14 g++-14-arm-linux-gnueabihf 288s g++-arm-linux-gnueabihf gcc gcc-14 gcc-14-arm-linux-gnueabihf 288s gcc-arm-linux-gnueabihf gfortran gfortran-14 gfortran-14-arm-linux-gnueabihf 288s gfortran-arm-linux-gnueabihf icu-devtools libasan8 libblas-dev libbz2-dev 288s libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdeflate-dev libgcc-14-dev 288s libgfortran-14-dev libicu-dev libisl23 libjpeg-dev libjpeg-turbo8-dev 288s libjpeg8-dev liblapack-dev liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 288s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev 288s libreadline-dev libstdc++-14-dev libtirpc-dev libubsan1 linux-libc-dev 288s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 288s 0 upgraded, 55 newly installed, 0 to remove and 0 not upgraded. 288s Need to get 78.1 MB of archives. 288s After this operation, 243 MB of additional disk space will be used. 288s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-dev-bin armhf 2.41-1ubuntu2 [23.0 kB] 288s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf linux-libc-dev armhf 6.14.0-10.10 [1683 kB] 290s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libcrypt-dev armhf 1:4.4.38-1 [120 kB] 290s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB] 290s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6-dev armhf 2.41-1ubuntu2 [1396 kB] 292s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libisl23 armhf 0.27-1 [546 kB] 293s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libmpc3 armhf 1.3.1-1build2 [47.1 kB] 293s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [9220 kB] 302s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14 armhf 14.2.0-17ubuntu3 [1030 B] 302s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [5578 B] 302s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf cpp armhf 4:14.2.0-1ubuntu1 [22.4 kB] 302s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libcc1-0 armhf 15-20250222-0ubuntu1 [38.9 kB] 302s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libasan8 armhf 15-20250222-0ubuntu1 [2955 kB] 305s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libubsan1 armhf 15-20250222-0ubuntu1 [1191 kB] 306s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-14-dev armhf 14.2.0-17ubuntu3 [897 kB] 307s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [18.0 MB] 327s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14 armhf 14.2.0-17ubuntu3 [506 kB] 327s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [1218 B] 327s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf gcc armhf 4:14.2.0-1ubuntu1 [5004 B] 327s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++-14-dev armhf 14.2.0-17ubuntu3 [2573 kB] 330s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [10.5 MB] 342s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14 armhf 14.2.0-17ubuntu3 [21.8 kB] 342s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf g++-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [966 B] 342s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf g++ armhf 4:14.2.0-1ubuntu1 [1084 B] 342s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf build-essential armhf 12.10ubuntu1 [4928 B] 342s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf dctrl-tools armhf 2.24-3build3 [94.7 kB] 342s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran-14-dev armhf 14.2.0-17ubuntu3 [370 kB] 342s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf gfortran-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [9763 kB] 354s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf gfortran-14 armhf 14.2.0-17ubuntu3 [13.6 kB] 354s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf gfortran-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [1026 B] 354s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf gfortran armhf 4:14.2.0-1ubuntu1 [1166 B] 354s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf icu-devtools armhf 76.1-1ubuntu2 [206 kB] 354s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libblas-dev armhf 3.12.1-2 [141 kB] 354s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libbz2-dev armhf 1.0.8-6 [30.9 kB] 354s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate-dev armhf 1.23-1 [45.0 kB] 354s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libicu-dev armhf 76.1-1ubuntu2 [12.0 MB] 368s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8-dev armhf 2.1.5-3ubuntu2 [265 kB] 368s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8-dev armhf 8c-2ubuntu11 [1484 B] 368s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-dev armhf 8c-2ubuntu11 [1482 B] 368s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack-dev armhf 3.12.1-2 [2207 kB] 371s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libncurses-dev armhf 6.5+20250216-2 [345 kB] 371s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-16-0 armhf 10.45-1 [207 kB] 372s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-32-0 armhf 10.45-1 [197 kB] 372s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-posix3 armhf 10.45-1 [6300 B] 372s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-dev armhf 10.45-1 [752 kB] 373s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libpkgconf3 armhf 1.8.1-4 [26.6 kB] 373s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1ubuntu1 [880 kB] 374s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf libpng-dev armhf 1.6.47-1 [251 kB] 374s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libreadline-dev armhf 8.2-6 [153 kB] 374s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf liblzma-dev armhf 5.6.4-1 [166 kB] 374s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf pkgconf-bin armhf 1.8.1-4 [21.2 kB] 374s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf pkgconf armhf 1.8.1-4 [16.8 kB] 374s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libtirpc-dev armhf 1.3.4+ds-1.3 [184 kB] 375s Get:54 http://ftpmaster.internal/ubuntu plucky/universe armhf r-base-dev all 4.4.3-1 [4176 B] 375s Get:55 http://ftpmaster.internal/ubuntu plucky/universe armhf pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 375s Fetched 78.1 MB in 1min 26s (904 kB/s) 375s Selecting previously unselected package libc-dev-bin. 375s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66905 files and directories currently installed.) 375s Preparing to unpack .../00-libc-dev-bin_2.41-1ubuntu2_armhf.deb ... 376s Unpacking libc-dev-bin (2.41-1ubuntu2) ... 376s Selecting previously unselected package linux-libc-dev:armhf. 376s Preparing to unpack .../01-linux-libc-dev_6.14.0-10.10_armhf.deb ... 376s Unpacking linux-libc-dev:armhf (6.14.0-10.10) ... 376s Selecting previously unselected package libcrypt-dev:armhf. 376s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.38-1_armhf.deb ... 376s Unpacking libcrypt-dev:armhf (1:4.4.38-1) ... 376s Selecting previously unselected package rpcsvc-proto. 376s Preparing to unpack .../03-rpcsvc-proto_1.4.2-0ubuntu7_armhf.deb ... 376s Unpacking rpcsvc-proto (1.4.2-0ubuntu7) ... 376s Selecting previously unselected package libc6-dev:armhf. 376s Preparing to unpack .../04-libc6-dev_2.41-1ubuntu2_armhf.deb ... 376s Unpacking libc6-dev:armhf (2.41-1ubuntu2) ... 376s Selecting previously unselected package libisl23:armhf. 376s Preparing to unpack .../05-libisl23_0.27-1_armhf.deb ... 376s Unpacking libisl23:armhf (0.27-1) ... 376s Selecting previously unselected package libmpc3:armhf. 376s Preparing to unpack .../06-libmpc3_1.3.1-1build2_armhf.deb ... 376s Unpacking libmpc3:armhf (1.3.1-1build2) ... 376s Selecting previously unselected package cpp-14-arm-linux-gnueabihf. 376s Preparing to unpack .../07-cpp-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 376s Unpacking cpp-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 377s Selecting previously unselected package cpp-14. 377s Preparing to unpack .../08-cpp-14_14.2.0-17ubuntu3_armhf.deb ... 377s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 377s Selecting previously unselected package cpp-arm-linux-gnueabihf. 377s Preparing to unpack .../09-cpp-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 377s Unpacking cpp-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 377s Selecting previously unselected package cpp. 377s Preparing to unpack .../10-cpp_4%3a14.2.0-1ubuntu1_armhf.deb ... 377s Unpacking cpp (4:14.2.0-1ubuntu1) ... 377s Selecting previously unselected package libcc1-0:armhf. 377s Preparing to unpack .../11-libcc1-0_15-20250222-0ubuntu1_armhf.deb ... 377s Unpacking libcc1-0:armhf (15-20250222-0ubuntu1) ... 377s Selecting previously unselected package libasan8:armhf. 377s Preparing to unpack .../12-libasan8_15-20250222-0ubuntu1_armhf.deb ... 377s Unpacking libasan8:armhf (15-20250222-0ubuntu1) ... 377s Selecting previously unselected package libubsan1:armhf. 377s Preparing to unpack .../13-libubsan1_15-20250222-0ubuntu1_armhf.deb ... 377s Unpacking libubsan1:armhf (15-20250222-0ubuntu1) ... 377s Selecting previously unselected package libgcc-14-dev:armhf. 377s Preparing to unpack .../14-libgcc-14-dev_14.2.0-17ubuntu3_armhf.deb ... 377s Unpacking libgcc-14-dev:armhf (14.2.0-17ubuntu3) ... 377s Selecting previously unselected package gcc-14-arm-linux-gnueabihf. 377s Preparing to unpack .../15-gcc-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 377s Unpacking gcc-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 378s Selecting previously unselected package gcc-14. 378s Preparing to unpack .../16-gcc-14_14.2.0-17ubuntu3_armhf.deb ... 378s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 378s Selecting previously unselected package gcc-arm-linux-gnueabihf. 378s Preparing to unpack .../17-gcc-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 378s Unpacking gcc-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 378s Selecting previously unselected package gcc. 378s Preparing to unpack .../18-gcc_4%3a14.2.0-1ubuntu1_armhf.deb ... 378s Unpacking gcc (4:14.2.0-1ubuntu1) ... 378s Selecting previously unselected package libstdc++-14-dev:armhf. 378s Preparing to unpack .../19-libstdc++-14-dev_14.2.0-17ubuntu3_armhf.deb ... 378s Unpacking libstdc++-14-dev:armhf (14.2.0-17ubuntu3) ... 379s Selecting previously unselected package g++-14-arm-linux-gnueabihf. 379s Preparing to unpack .../20-g++-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 379s Unpacking g++-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 379s Selecting previously unselected package g++-14. 379s Preparing to unpack .../21-g++-14_14.2.0-17ubuntu3_armhf.deb ... 379s Unpacking g++-14 (14.2.0-17ubuntu3) ... 379s Selecting previously unselected package g++-arm-linux-gnueabihf. 379s Preparing to unpack .../22-g++-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 379s Unpacking g++-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 379s Selecting previously unselected package g++. 379s Preparing to unpack .../23-g++_4%3a14.2.0-1ubuntu1_armhf.deb ... 379s Unpacking g++ (4:14.2.0-1ubuntu1) ... 379s Selecting previously unselected package build-essential. 379s Preparing to unpack .../24-build-essential_12.10ubuntu1_armhf.deb ... 379s Unpacking build-essential (12.10ubuntu1) ... 379s Selecting previously unselected package dctrl-tools. 379s Preparing to unpack .../25-dctrl-tools_2.24-3build3_armhf.deb ... 379s Unpacking dctrl-tools (2.24-3build3) ... 379s Selecting previously unselected package libgfortran-14-dev:armhf. 379s Preparing to unpack .../26-libgfortran-14-dev_14.2.0-17ubuntu3_armhf.deb ... 379s Unpacking libgfortran-14-dev:armhf (14.2.0-17ubuntu3) ... 379s Selecting previously unselected package gfortran-14-arm-linux-gnueabihf. 379s Preparing to unpack .../27-gfortran-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 379s Unpacking gfortran-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 380s Selecting previously unselected package gfortran-14. 380s Preparing to unpack .../28-gfortran-14_14.2.0-17ubuntu3_armhf.deb ... 380s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 380s Selecting previously unselected package gfortran-arm-linux-gnueabihf. 380s Preparing to unpack .../29-gfortran-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 380s Unpacking gfortran-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 380s Selecting previously unselected package gfortran. 380s Preparing to unpack .../30-gfortran_4%3a14.2.0-1ubuntu1_armhf.deb ... 380s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 380s Selecting previously unselected package icu-devtools. 380s Preparing to unpack .../31-icu-devtools_76.1-1ubuntu2_armhf.deb ... 380s Unpacking icu-devtools (76.1-1ubuntu2) ... 380s Selecting previously unselected package libblas-dev:armhf. 380s Preparing to unpack .../32-libblas-dev_3.12.1-2_armhf.deb ... 380s Unpacking libblas-dev:armhf (3.12.1-2) ... 380s Selecting previously unselected package libbz2-dev:armhf. 380s Preparing to unpack .../33-libbz2-dev_1.0.8-6_armhf.deb ... 380s Unpacking libbz2-dev:armhf (1.0.8-6) ... 380s Selecting previously unselected package libdeflate-dev:armhf. 380s Preparing to unpack .../34-libdeflate-dev_1.23-1_armhf.deb ... 380s Unpacking libdeflate-dev:armhf (1.23-1) ... 380s Selecting previously unselected package libicu-dev:armhf. 380s Preparing to unpack .../35-libicu-dev_76.1-1ubuntu2_armhf.deb ... 380s Unpacking libicu-dev:armhf (76.1-1ubuntu2) ... 381s Selecting previously unselected package libjpeg-turbo8-dev:armhf. 381s Preparing to unpack .../36-libjpeg-turbo8-dev_2.1.5-3ubuntu2_armhf.deb ... 381s Unpacking libjpeg-turbo8-dev:armhf (2.1.5-3ubuntu2) ... 381s Selecting previously unselected package libjpeg8-dev:armhf. 381s Preparing to unpack .../37-libjpeg8-dev_8c-2ubuntu11_armhf.deb ... 381s Unpacking libjpeg8-dev:armhf (8c-2ubuntu11) ... 381s Selecting previously unselected package libjpeg-dev:armhf. 381s Preparing to unpack .../38-libjpeg-dev_8c-2ubuntu11_armhf.deb ... 381s Unpacking libjpeg-dev:armhf (8c-2ubuntu11) ... 381s Selecting previously unselected package liblapack-dev:armhf. 381s Preparing to unpack .../39-liblapack-dev_3.12.1-2_armhf.deb ... 381s Unpacking liblapack-dev:armhf (3.12.1-2) ... 381s Selecting previously unselected package libncurses-dev:armhf. 381s Preparing to unpack .../40-libncurses-dev_6.5+20250216-2_armhf.deb ... 381s Unpacking libncurses-dev:armhf (6.5+20250216-2) ... 381s Selecting previously unselected package libpcre2-16-0:armhf. 381s Preparing to unpack .../41-libpcre2-16-0_10.45-1_armhf.deb ... 381s Unpacking libpcre2-16-0:armhf (10.45-1) ... 381s Selecting previously unselected package libpcre2-32-0:armhf. 381s Preparing to unpack .../42-libpcre2-32-0_10.45-1_armhf.deb ... 381s Unpacking libpcre2-32-0:armhf (10.45-1) ... 381s Selecting previously unselected package libpcre2-posix3:armhf. 381s Preparing to unpack .../43-libpcre2-posix3_10.45-1_armhf.deb ... 381s Unpacking libpcre2-posix3:armhf (10.45-1) ... 381s Selecting previously unselected package libpcre2-dev:armhf. 381s Preparing to unpack .../44-libpcre2-dev_10.45-1_armhf.deb ... 381s Unpacking libpcre2-dev:armhf (10.45-1) ... 381s Selecting previously unselected package libpkgconf3:armhf. 381s Preparing to unpack .../45-libpkgconf3_1.8.1-4_armhf.deb ... 381s Unpacking libpkgconf3:armhf (1.8.1-4) ... 382s Selecting previously unselected package zlib1g-dev:armhf. 382s Preparing to unpack .../46-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_armhf.deb ... 382s Unpacking zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 382s Selecting previously unselected package libpng-dev:armhf. 382s Preparing to unpack .../47-libpng-dev_1.6.47-1_armhf.deb ... 382s Unpacking libpng-dev:armhf (1.6.47-1) ... 382s Selecting previously unselected package libreadline-dev:armhf. 382s Preparing to unpack .../48-libreadline-dev_8.2-6_armhf.deb ... 382s Unpacking libreadline-dev:armhf (8.2-6) ... 382s Selecting previously unselected package liblzma-dev:armhf. 382s Preparing to unpack .../49-liblzma-dev_5.6.4-1_armhf.deb ... 382s Unpacking liblzma-dev:armhf (5.6.4-1) ... 382s Selecting previously unselected package pkgconf-bin. 382s Preparing to unpack .../50-pkgconf-bin_1.8.1-4_armhf.deb ... 382s Unpacking pkgconf-bin (1.8.1-4) ... 382s Selecting previously unselected package pkgconf:armhf. 382s Preparing to unpack .../51-pkgconf_1.8.1-4_armhf.deb ... 382s Unpacking pkgconf:armhf (1.8.1-4) ... 382s Selecting previously unselected package libtirpc-dev:armhf. 382s Preparing to unpack .../52-libtirpc-dev_1.3.4+ds-1.3_armhf.deb ... 382s Unpacking libtirpc-dev:armhf (1.3.4+ds-1.3) ... 382s Selecting previously unselected package r-base-dev. 382s Preparing to unpack .../53-r-base-dev_4.4.3-1_all.deb ... 382s Unpacking r-base-dev (4.4.3-1) ... 382s Selecting previously unselected package pkg-r-autopkgtest. 382s Preparing to unpack .../54-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 382s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 382s Setting up linux-libc-dev:armhf (6.14.0-10.10) ... 382s Setting up libpcre2-16-0:armhf (10.45-1) ... 382s Setting up libpcre2-32-0:armhf (10.45-1) ... 382s Setting up libtirpc-dev:armhf (1.3.4+ds-1.3) ... 382s Setting up libpkgconf3:armhf (1.8.1-4) ... 382s Setting up rpcsvc-proto (1.4.2-0ubuntu7) ... 382s Setting up libmpc3:armhf (1.3.1-1build2) ... 382s Setting up icu-devtools (76.1-1ubuntu2) ... 382s Setting up pkgconf-bin (1.8.1-4) ... 382s Setting up liblzma-dev:armhf (5.6.4-1) ... 382s Setting up libubsan1:armhf (15-20250222-0ubuntu1) ... 382s Setting up libpcre2-posix3:armhf (10.45-1) ... 382s Setting up libcrypt-dev:armhf (1:4.4.38-1) ... 382s Setting up libasan8:armhf (15-20250222-0ubuntu1) ... 382s Setting up libgcc-14-dev:armhf (14.2.0-17ubuntu3) ... 382s Setting up libisl23:armhf (0.27-1) ... 382s Setting up libc-dev-bin (2.41-1ubuntu2) ... 382s Setting up libdeflate-dev:armhf (1.23-1) ... 382s Setting up libcc1-0:armhf (15-20250222-0ubuntu1) ... 382s Setting up libblas-dev:armhf (3.12.1-2) ... 382s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode 382s Setting up dctrl-tools (2.24-3build3) ... 382s Setting up cpp-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 382s Setting up libgfortran-14-dev:armhf (14.2.0-17ubuntu3) ... 382s Setting up gcc-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 382s Setting up pkgconf:armhf (1.8.1-4) ... 382s Setting up liblapack-dev:armhf (3.12.1-2) ... 382s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode 382s Setting up cpp-14 (14.2.0-17ubuntu3) ... 382s Setting up libc6-dev:armhf (2.41-1ubuntu2) ... 382s Setting up libstdc++-14-dev:armhf (14.2.0-17ubuntu3) ... 382s Setting up libicu-dev:armhf (76.1-1ubuntu2) ... 382s Setting up cpp-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 382s Setting up gfortran-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 382s Setting up libbz2-dev:armhf (1.0.8-6) ... 382s Setting up gcc-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 382s Setting up g++-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 382s Setting up libjpeg-turbo8-dev:armhf (2.1.5-3ubuntu2) ... 382s Setting up libncurses-dev:armhf (6.5+20250216-2) ... 382s Setting up libpcre2-dev:armhf (10.45-1) ... 382s Setting up libreadline-dev:armhf (8.2-6) ... 382s Setting up gcc-14 (14.2.0-17ubuntu3) ... 382s Setting up gfortran-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 382s Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 382s Setting up cpp (4:14.2.0-1ubuntu1) ... 382s Setting up g++-14 (14.2.0-17ubuntu3) ... 382s Setting up libjpeg8-dev:armhf (8c-2ubuntu11) ... 382s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 382s Setting up g++-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 382s Setting up libpng-dev:armhf (1.6.47-1) ... 382s Setting up libjpeg-dev:armhf (8c-2ubuntu11) ... 382s Setting up gcc (4:14.2.0-1ubuntu1) ... 382s Setting up g++ (4:14.2.0-1ubuntu1) ... 382s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 382s Setting up build-essential (12.10ubuntu1) ... 382s Setting up gfortran (4:14.2.0-1ubuntu1) ... 382s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 382s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 382s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 382s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 382s Setting up r-base-dev (4.4.3-1) ... 382s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 382s Processing triggers for libc-bin (2.41-1ubuntu2) ... 382s Processing triggers for man-db (2.13.0-1) ... 384s Processing triggers for install-info (7.1.1-1) ... 392s autopkgtest [16:46:24]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 392s autopkgtest [16:46:24]: test pkg-r-autopkgtest: [----------------------- 394s Test: Try to load the R library spatstat.univar 394s 394s R version 4.4.3 (2025-02-28) -- "Trophy Case" 394s Copyright (C) 2025 The R Foundation for Statistical Computing 394s Platform: arm-unknown-linux-gnueabihf (32-bit) 394s 394s R is free software and comes with ABSOLUTELY NO WARRANTY. 394s You are welcome to redistribute it under certain conditions. 394s Type 'license()' or 'licence()' for distribution details. 394s 394s R is a collaborative project with many contributors. 394s Type 'contributors()' for more information and 394s 'citation()' on how to cite R or R packages in publications. 394s 394s Type 'demo()' for some demos, 'help()' for on-line help, or 394s 'help.start()' for an HTML browser interface to help. 394s Type 'q()' to quit R. 394s 394s > library('spatstat.univar') 394s spatstat.univar 3.1-1 394s > 394s > 394s Other tests are currently unsupported! 394s They will be progressively added. 395s autopkgtest [16:46:27]: test pkg-r-autopkgtest: -----------------------] 398s autopkgtest [16:46:30]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 398s pkg-r-autopkgtest PASS 402s autopkgtest [16:46:34]: @@@@@@@@@@@@@@@@@@@@ summary 402s run-unit-test PASS 402s pkg-r-autopkgtest PASS