0s autopkgtest [12:23:37]: starting date and time: 2024-11-03 12:23:37+0000 0s autopkgtest [12:23:37]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [12:23:37]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qves5rho/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:r-cran-seurat,src:r-cran-seuratobject --apt-upgrade r-cran-seurat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-cran-seurat/5.1.0-1 r-cran-seuratobject/5.0.2-1' -- lxd -r lxd-armhf-10.145.243.142 lxd-armhf-10.145.243.142:autopkgtest/ubuntu/plucky/armhf 60s autopkgtest [12:24:37]: testbed dpkg architecture: armhf 62s autopkgtest [12:24:39]: testbed apt version: 2.9.8 62s autopkgtest [12:24:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup 75s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 75s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [177 kB] 76s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2268 kB] 85s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 85s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [31.2 kB] 85s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [209 kB] 86s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [1640 kB] 93s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [23.9 kB] 93s Fetched 4430 kB in 19s (238 kB/s) 94s Reading package lists... 113s tee: /proc/self/fd/2: Permission denied 303s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 303s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 303s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 303s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 304s Reading package lists... 304s Reading package lists... 304s Building dependency tree... 304s Reading state information... 305s Calculating upgrade... 305s The following packages were automatically installed and are no longer required: 305s libperl5.38t64 perl-modules-5.38 305s Use 'apt autoremove' to remove them. 305s The following NEW packages will be installed: 305s libperl5.40 perl-modules-5.40 305s The following packages will be upgraded: 305s base-files distro-info-data fwupd gcc-14-base info install-info iproute2 305s libatomic1 libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 305s libblockdev-mdraid3 libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 305s libblockdev-utils3 libblockdev3 libdb5.3t64 libdw1t64 libelf1t64 libevdev2 305s libftdi1-2 libfwupd2 libgcc-s1 libinih1 libkeyutils1 liblocale-gettext-perl 305s libpipeline1 libsgutils2-1.46-2 libstdc++6 libtext-charwidth-perl 305s libtext-iconv-perl motd-news-config nano perl perl-base python3-configobj 305s python3-json-pointer python3-lazr.uri python3-zipp sg3-utils sg3-utils-udev 305s vim-common vim-tiny xxd 306s 45 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 306s Need to get 19.6 MB of archives. 306s After this operation, 42.8 MB of additional disk space will be used. 306s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf motd-news-config all 13.5ubuntu2 [5274 B] 306s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf base-files armhf 13.5ubuntu2 [68.6 kB] 306s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-6 [3214 kB] 308s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-6 [4140 kB] 309s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-6 [262 kB] 310s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-6 [1674 kB] 310s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf liblocale-gettext-perl armhf 1.07-7build1 [15.0 kB] 310s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-iconv-perl armhf 1.7-8build4 [12.8 kB] 310s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-charwidth-perl armhf 0.04-11build4 [9128 B] 310s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [655 kB] 310s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-7ubuntu1 [7842 B] 310s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-7ubuntu1 [51.2 kB] 310s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-7ubuntu1 [711 kB] 310s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-7ubuntu1 [40.8 kB] 310s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf install-info armhf 7.1.1-1 [61.4 kB] 310s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf distro-info-data all 0.63 [6588 B] 310s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB] 310s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libelf1t64 armhf 0.192-4 [50.2 kB] 310s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf iproute2 armhf 6.10.0-2ubuntu1 [1082 kB] 310s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libkeyutils1 armhf 1.6.3-4ubuntu2 [8712 B] 310s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf vim-tiny armhf 2:9.1.0777-1ubuntu1 [693 kB] 310s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf vim-common all 2:9.1.0777-1ubuntu1 [394 kB] 310s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf xxd armhf 2:9.1.0777-1ubuntu1 [66.8 kB] 310s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf info armhf 7.1.1-1 [126 kB] 310s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libevdev2 armhf 1.13.3+dfsg-1 [29.7 kB] 310s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libpipeline1 armhf 1.5.8-1 [26.9 kB] 310s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.2-1 [276 kB] 310s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd2 armhf 1.9.26-2 [125 kB] 310s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 1.9.26-2 [4404 kB] 311s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-utils3 armhf 3.2.0-2 [17.4 kB] 311s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-crypto3 armhf 3.2.0-2 [22.3 kB] 311s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-fs3 armhf 3.2.0-2 [34.3 kB] 311s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-loop3 armhf 3.2.0-2 [6552 B] 311s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-mdraid3 armhf 3.2.0-2 [13.4 kB] 311s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-nvme3 armhf 3.2.0-2 [17.6 kB] 311s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-part3 armhf 3.2.0-2 [16.5 kB] 311s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-swap3 armhf 3.2.0-2 [8942 B] 311s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev3 armhf 3.2.0-2 [44.2 kB] 311s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7 [25.7 kB] 311s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libinih1 armhf 58-1ubuntu1 [6750 B] 311s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libsgutils2-1.46-2 armhf 1.46-3ubuntu5 [82.5 kB] 311s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf python3-configobj all 5.0.9-1 [33.9 kB] 311s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-2 [8396 B] 311s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.uri all 1.0.6-4 [13.6 kB] 311s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf python3-zipp all 3.20.2-1 [10.1 kB] 311s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils armhf 1.46-3ubuntu5 [816 kB] 311s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils-udev all 1.46-3ubuntu5 [5916 B] 311s Preconfiguring packages ... 311s Fetched 19.6 MB in 5s (3649 kB/s) 311s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 311s Preparing to unpack .../motd-news-config_13.5ubuntu2_all.deb ... 311s Unpacking motd-news-config (13.5ubuntu2) over (13.3ubuntu6) ... 311s Preparing to unpack .../base-files_13.5ubuntu2_armhf.deb ... 311s Unpacking base-files (13.5ubuntu2) over (13.3ubuntu6) ... 312s Setting up base-files (13.5ubuntu2) ... 312s Installing new version of config file /etc/issue ... 312s Installing new version of config file /etc/issue.net ... 312s Installing new version of config file /etc/lsb-release ... 312s motd-news.service is a disabled or a static unit not running, not starting it. 312s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 312s Preparing to unpack .../perl_5.40.0-6_armhf.deb ... 312s Unpacking perl (5.40.0-6) over (5.38.2-5) ... 312s Selecting previously unselected package perl-modules-5.40. 312s Preparing to unpack .../perl-modules-5.40_5.40.0-6_all.deb ... 312s Unpacking perl-modules-5.40 (5.40.0-6) ... 313s Selecting previously unselected package libperl5.40:armhf. 313s Preparing to unpack .../libperl5.40_5.40.0-6_armhf.deb ... 313s Unpacking libperl5.40:armhf (5.40.0-6) ... 313s Preparing to unpack .../perl-base_5.40.0-6_armhf.deb ... 313s Unpacking perl-base (5.40.0-6) over (5.38.2-5) ... 313s Setting up perl-base (5.40.0-6) ... 313s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 313s Preparing to unpack .../liblocale-gettext-perl_1.07-7build1_armhf.deb ... 313s Unpacking liblocale-gettext-perl (1.07-7build1) over (1.07-7) ... 313s Preparing to unpack .../libtext-iconv-perl_1.7-8build4_armhf.deb ... 313s Unpacking libtext-iconv-perl:armhf (1.7-8build4) over (1.7-8build3) ... 313s Preparing to unpack .../libtext-charwidth-perl_0.04-11build4_armhf.deb ... 313s Unpacking libtext-charwidth-perl:armhf (0.04-11build4) over (0.04-11build3) ... 313s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-9_armhf.deb ... 313s Unpacking libdb5.3t64:armhf (5.3.28+dfsg2-9) over (5.3.28+dfsg2-7) ... 313s Setting up libdb5.3t64:armhf (5.3.28+dfsg2-9) ... 313s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 313s Preparing to unpack .../libatomic1_14.2.0-7ubuntu1_armhf.deb ... 313s Unpacking libatomic1:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ... 313s Preparing to unpack .../gcc-14-base_14.2.0-7ubuntu1_armhf.deb ... 313s Unpacking gcc-14-base:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ... 313s Setting up gcc-14-base:armhf (14.2.0-7ubuntu1) ... 313s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 313s Preparing to unpack .../libstdc++6_14.2.0-7ubuntu1_armhf.deb ... 313s Unpacking libstdc++6:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ... 313s Setting up libstdc++6:armhf (14.2.0-7ubuntu1) ... 313s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 313s Preparing to unpack .../libgcc-s1_14.2.0-7ubuntu1_armhf.deb ... 313s Unpacking libgcc-s1:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ... 313s Setting up libgcc-s1:armhf (14.2.0-7ubuntu1) ... 314s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 314s Preparing to unpack .../install-info_7.1.1-1_armhf.deb ... 314s Unpacking install-info (7.1.1-1) over (7.1-3build2) ... 314s Setting up install-info (7.1.1-1) ... 314s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 314s Preparing to unpack .../00-distro-info-data_0.63_all.deb ... 314s Unpacking distro-info-data (0.63) over (0.62) ... 314s Preparing to unpack .../01-libdw1t64_0.192-4_armhf.deb ... 314s Unpacking libdw1t64:armhf (0.192-4) over (0.191-2) ... 314s Preparing to unpack .../02-libelf1t64_0.192-4_armhf.deb ... 314s Unpacking libelf1t64:armhf (0.192-4) over (0.191-2) ... 314s Preparing to unpack .../03-iproute2_6.10.0-2ubuntu1_armhf.deb ... 314s Unpacking iproute2 (6.10.0-2ubuntu1) over (6.10.0-2) ... 314s Preparing to unpack .../04-libkeyutils1_1.6.3-4ubuntu2_armhf.deb ... 314s Unpacking libkeyutils1:armhf (1.6.3-4ubuntu2) over (1.6.3-3build1) ... 314s Preparing to unpack .../05-vim-tiny_2%3a9.1.0777-1ubuntu1_armhf.deb ... 314s Unpacking vim-tiny (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ... 314s Preparing to unpack .../06-vim-common_2%3a9.1.0777-1ubuntu1_all.deb ... 314s Unpacking vim-common (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ... 314s Preparing to unpack .../07-xxd_2%3a9.1.0777-1ubuntu1_armhf.deb ... 314s Unpacking xxd (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ... 314s Preparing to unpack .../08-info_7.1.1-1_armhf.deb ... 314s Unpacking info (7.1.1-1) over (7.1-3build2) ... 314s Preparing to unpack .../09-libevdev2_1.13.3+dfsg-1_armhf.deb ... 314s Unpacking libevdev2:armhf (1.13.3+dfsg-1) over (1.13.2+dfsg-1) ... 314s Preparing to unpack .../10-libpipeline1_1.5.8-1_armhf.deb ... 314s Unpacking libpipeline1:armhf (1.5.8-1) over (1.5.7-2) ... 314s Preparing to unpack .../11-nano_8.2-1_armhf.deb ... 314s Unpacking nano (8.2-1) over (8.1-1) ... 314s Preparing to unpack .../12-libfwupd2_1.9.26-2_armhf.deb ... 314s Unpacking libfwupd2:armhf (1.9.26-2) over (1.9.24-1) ... 314s Preparing to unpack .../13-fwupd_1.9.26-2_armhf.deb ... 314s Unpacking fwupd (1.9.26-2) over (1.9.24-1) ... 315s Preparing to unpack .../14-libblockdev-utils3_3.2.0-2_armhf.deb ... 315s Unpacking libblockdev-utils3:armhf (3.2.0-2) over (3.1.1-2) ... 315s Preparing to unpack .../15-libblockdev-crypto3_3.2.0-2_armhf.deb ... 315s Unpacking libblockdev-crypto3:armhf (3.2.0-2) over (3.1.1-2) ... 315s Preparing to unpack .../16-libblockdev-fs3_3.2.0-2_armhf.deb ... 315s Unpacking libblockdev-fs3:armhf (3.2.0-2) over (3.1.1-2) ... 315s Preparing to unpack .../17-libblockdev-loop3_3.2.0-2_armhf.deb ... 315s Unpacking libblockdev-loop3:armhf (3.2.0-2) over (3.1.1-2) ... 315s Preparing to unpack .../18-libblockdev-mdraid3_3.2.0-2_armhf.deb ... 315s Unpacking libblockdev-mdraid3:armhf (3.2.0-2) over (3.1.1-2) ... 315s Preparing to unpack .../19-libblockdev-nvme3_3.2.0-2_armhf.deb ... 315s Unpacking libblockdev-nvme3:armhf (3.2.0-2) over (3.1.1-2) ... 315s Preparing to unpack .../20-libblockdev-part3_3.2.0-2_armhf.deb ... 315s Unpacking libblockdev-part3:armhf (3.2.0-2) over (3.1.1-2) ... 315s Preparing to unpack .../21-libblockdev-swap3_3.2.0-2_armhf.deb ... 315s Unpacking libblockdev-swap3:armhf (3.2.0-2) over (3.1.1-2) ... 315s Preparing to unpack .../22-libblockdev3_3.2.0-2_armhf.deb ... 315s Unpacking libblockdev3:armhf (3.2.0-2) over (3.1.1-2) ... 315s Preparing to unpack .../23-libftdi1-2_1.5-7_armhf.deb ... 315s Unpacking libftdi1-2:armhf (1.5-7) over (1.5-6build5) ... 315s Preparing to unpack .../24-libinih1_58-1ubuntu1_armhf.deb ... 315s Unpacking libinih1:armhf (58-1ubuntu1) over (55-1ubuntu2) ... 315s Preparing to unpack .../25-libsgutils2-1.46-2_1.46-3ubuntu5_armhf.deb ... 315s Unpacking libsgutils2-1.46-2:armhf (1.46-3ubuntu5) over (1.46-3ubuntu4) ... 315s Preparing to unpack .../26-python3-configobj_5.0.9-1_all.deb ... 315s Unpacking python3-configobj (5.0.9-1) over (5.0.8-3) ... 315s Preparing to unpack .../27-python3-json-pointer_2.4-2_all.deb ... 315s Unpacking python3-json-pointer (2.4-2) over (2.0-0ubuntu1) ... 315s Preparing to unpack .../28-python3-lazr.uri_1.0.6-4_all.deb ... 315s Unpacking python3-lazr.uri (1.0.6-4) over (1.0.6-3) ... 315s Preparing to unpack .../29-python3-zipp_3.20.2-1_all.deb ... 315s Unpacking python3-zipp (3.20.2-1) over (3.20.0-1) ... 315s Preparing to unpack .../30-sg3-utils_1.46-3ubuntu5_armhf.deb ... 315s Unpacking sg3-utils (1.46-3ubuntu5) over (1.46-3ubuntu4) ... 315s Preparing to unpack .../31-sg3-utils-udev_1.46-3ubuntu5_all.deb ... 315s Unpacking sg3-utils-udev (1.46-3ubuntu5) over (1.46-3ubuntu4) ... 315s Setting up libpipeline1:armhf (1.5.8-1) ... 315s Setting up motd-news-config (13.5ubuntu2) ... 315s Setting up libtext-iconv-perl:armhf (1.7-8build4) ... 315s Setting up libtext-charwidth-perl:armhf (0.04-11build4) ... 315s Setting up libkeyutils1:armhf (1.6.3-4ubuntu2) ... 315s Setting up distro-info-data (0.63) ... 315s Setting up libinih1:armhf (58-1ubuntu1) ... 315s Setting up libfwupd2:armhf (1.9.26-2) ... 315s Setting up libsgutils2-1.46-2:armhf (1.46-3ubuntu5) ... 315s Setting up python3-lazr.uri (1.0.6-4) ... 316s Setting up python3-zipp (3.20.2-1) ... 316s Setting up xxd (2:9.1.0777-1ubuntu1) ... 316s Setting up libelf1t64:armhf (0.192-4) ... 316s Setting up libdw1t64:armhf (0.192-4) ... 316s Setting up libftdi1-2:armhf (1.5-7) ... 316s Setting up python3-configobj (5.0.9-1) ... 316s Setting up vim-common (2:9.1.0777-1ubuntu1) ... 316s Installing new version of config file /etc/vim/vimrc ... 316s Setting up libblockdev-utils3:armhf (3.2.0-2) ... 316s Setting up libatomic1:armhf (14.2.0-7ubuntu1) ... 316s Setting up libblockdev-nvme3:armhf (3.2.0-2) ... 316s Setting up nano (8.2-1) ... 316s Setting up libblockdev-fs3:armhf (3.2.0-2) ... 316s Setting up perl-modules-5.40 (5.40.0-6) ... 316s Setting up python3-json-pointer (2.4-2) ... 316s Setting up libevdev2:armhf (1.13.3+dfsg-1) ... 316s Setting up fwupd (1.9.26-2) ... 316s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 316s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 318s fwupd.service is a disabled or a static unit not running, not starting it. 318s Setting up info (7.1.1-1) ... 318s Setting up liblocale-gettext-perl (1.07-7build1) ... 318s Setting up sg3-utils (1.46-3ubuntu5) ... 318s Setting up libblockdev-mdraid3:armhf (3.2.0-2) ... 318s Setting up libblockdev-crypto3:armhf (3.2.0-2) ... 318s Setting up libblockdev-swap3:armhf (3.2.0-2) ... 318s Setting up iproute2 (6.10.0-2ubuntu1) ... 318s Setting up libblockdev-loop3:armhf (3.2.0-2) ... 318s Setting up vim-tiny (2:9.1.0777-1ubuntu1) ... 318s Setting up libblockdev3:armhf (3.2.0-2) ... 318s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ... 318s Setting up libblockdev-part3:armhf (3.2.0-2) ... 318s Setting up sg3-utils-udev (1.46-3ubuntu5) ... 318s update-initramfs: deferring update (trigger activated) 318s Setting up libperl5.40:armhf (5.40.0-6) ... 318s Setting up perl (5.40.0-6) ... 318s Processing triggers for dbus (1.14.10-4ubuntu5) ... 318s Processing triggers for install-info (7.1.1-1) ... 318s Processing triggers for initramfs-tools (0.142ubuntu34) ... 318s Processing triggers for libc-bin (2.40-1ubuntu3) ... 318s Processing triggers for man-db (2.12.1-3) ... 318s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-1ubuntu10) ... 318s update-initramfs: deferring update (trigger activated) 318s Processing triggers for initramfs-tools (0.142ubuntu34) ... 319s Reading package lists... 319s Building dependency tree... 319s Reading state information... 319s The following packages will be REMOVED: 319s libperl5.38t64* perl-modules-5.38* 320s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 320s After this operation, 41.6 MB disk space will be freed. 320s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 320s Removing libperl5.38t64:armhf (5.38.2-5) ... 320s Removing perl-modules-5.38 (5.38.2-5) ... 320s Processing triggers for man-db (2.12.1-3) ... 320s Processing triggers for libc-bin (2.40-1ubuntu3) ... 323s autopkgtest [12:29:00]: rebooting testbed after setup commands that affected boot 396s autopkgtest [12:30:13]: testbed running kernel: Linux 6.8.0-47-generic #47~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Oct 2 16:39:14 UTC 2 427s autopkgtest [12:30:44]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-seurat 444s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-seurat 5.1.0-1 (dsc) [3385 B] 444s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-seurat 5.1.0-1 (tar) [2064 kB] 444s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe r-cran-seurat 5.1.0-1 (diff) [4724 B] 444s gpgv: Signature made Tue Sep 10 23:46:06 2024 UTC 444s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 444s gpgv: issuer "plessy@debian.org" 444s gpgv: Can't check signature: No public key 444s dpkg-source: warning: cannot verify inline signature for ./r-cran-seurat_5.1.0-1.dsc: no acceptable signature found 444s autopkgtest [12:31:01]: testing package r-cran-seurat version 5.1.0-1 447s autopkgtest [12:31:04]: build not needed 450s autopkgtest [12:31:07]: test run-unit-test: preparing testbed 462s Reading package lists... 463s Building dependency tree... 463s Reading state information... 463s Starting pkgProblemResolver with broken count: 1 463s Starting 2 pkgProblemResolver with broken count: 1 463s Investigating (0) autopkgtest-satdep:armhf < none -> 0 @un puN Ib > 463s Broken autopkgtest-satdep:armhf Depends on r-cran-seurat:armhf < none | 5.1.0-1 @un uH > 463s Considering r-cran-seurat:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 463s Re-Instated zip:armhf 463s Re-Instated unzip:armhf 463s Re-Instated libpaper1:armhf 463s Re-Instated libpaper-utils:armhf 463s Re-Instated xdg-utils:armhf 463s Re-Instated libblas3:armhf 463s Re-Instated libfreetype6:armhf 463s Re-Instated fonts-dejavu-mono:armhf 463s Re-Instated fonts-dejavu-core:armhf 463s Re-Instated fontconfig-config:armhf 463s Re-Instated libfontconfig1:armhf 463s Re-Instated libpixman-1-0:armhf 463s Re-Instated libxcb-render0:armhf 463s Re-Instated libxcb-shm0:armhf 463s Re-Instated libxrender1:armhf 463s Re-Instated libcairo2:armhf 463s Re-Instated libdeflate0:armhf 463s Re-Instated libgomp1:armhf 463s Re-Instated libjpeg-turbo8:armhf 463s Re-Instated libjpeg8:armhf 463s Re-Instated libgfortran5:armhf 463s Re-Instated liblapack3:armhf 463s Re-Instated fontconfig:armhf 463s Re-Instated libgraphite2-3:armhf 463s Re-Instated libharfbuzz0b:armhf 463s Re-Instated libthai-data:armhf 463s Re-Instated libdatrie1:armhf 463s Re-Instated libthai0:armhf 463s Re-Instated libpango-1.0-0:armhf 463s Re-Instated libpangoft2-1.0-0:armhf 463s Re-Instated libpangocairo-1.0-0:armhf 463s Re-Instated libtcl8.6:armhf 463s Re-Instated libjbig0:armhf 463s Re-Instated liblerc4:armhf 463s Re-Instated libsharpyuv0:armhf 463s Re-Instated libwebp7:armhf 463s Re-Instated libtiff6:armhf 463s Re-Instated libxft2:armhf 463s Re-Instated x11-common:armhf 463s Re-Instated libxss1:armhf 463s Re-Instated libtk8.6:armhf 463s Re-Instated libice6:armhf 463s Re-Instated libsm6:armhf 463s Re-Instated libxt6t64:armhf 463s Re-Instated r-base-core:armhf 463s Re-Instated r-cran-lattice:armhf 463s Re-Instated r-cran-sp:armhf 463s Re-Instated r-cran-digest:armhf 463s Re-Instated r-cran-codetools:armhf 463s Re-Instated r-cran-globals:armhf 463s Re-Instated r-cran-listenv:armhf 463s Re-Instated r-cran-parallelly:armhf 463s Re-Instated r-cran-future:armhf 463s Re-Instated r-cran-future.apply:armhf 463s Re-Instated r-cran-matrix:armhf 463s Re-Instated r-cran-progressr:armhf 463s Re-Instated r-cran-littler:armhf 463s Re-Instated littler:armhf 463s Re-Instated r-cran-pkgkitten:armhf 463s Re-Instated r-cran-rcpp:armhf 463s Re-Instated r-cran-rlang:armhf 463s Re-Instated r-cran-dotcall64:armhf 463s Re-Instated r-cran-spam:armhf 463s Re-Instated r-cran-cli:armhf 463s Re-Instated r-cran-glue:armhf 463s Re-Instated r-cran-lifecycle:armhf 463s Re-Instated r-cran-generics:armhf 463s Re-Instated r-cran-rcppeigen:armhf 463s Re-Instated r-cran-seuratobject:armhf 463s Re-Instated r-cran-cluster:armhf 463s Re-Instated r-cran-gtable:armhf 463s Re-Instated r-cran-isoband:armhf 463s Re-Instated r-cran-mass:armhf 463s Re-Instated r-cran-nlme:armhf 463s Re-Instated r-cran-mgcv:armhf 463s Re-Instated r-cran-farver:armhf 463s Re-Instated r-cran-labeling:armhf 463s Re-Instated r-cran-colorspace:armhf 463s Re-Instated r-cran-munsell:armhf 463s Re-Instated r-cran-r6:armhf 463s Re-Instated r-cran-rcolorbrewer:armhf 463s Re-Instated r-cran-viridislite:armhf 463s Re-Instated r-cran-scales:armhf 463s Re-Instated r-cran-fansi:armhf 463s Re-Instated r-cran-magrittr:armhf 463s Re-Instated r-cran-utf8:armhf 463s Re-Instated r-cran-vctrs:armhf 463s Re-Instated r-cran-pillar:armhf 463s Re-Instated r-cran-pkgconfig:armhf 463s Re-Instated r-cran-tibble:armhf 463s Re-Instated r-cran-withr:armhf 463s Re-Instated r-cran-ggplot2:armhf 463s Re-Instated r-cran-cowplot:armhf 463s Re-Instated r-cran-data.table:armhf 463s Re-Instated r-cran-stringi:armhf 463s Re-Instated r-cran-stringr:armhf 463s Re-Instated r-cran-fastdummies:armhf 463s Re-Instated r-cran-survival:armhf 463s Re-Instated r-cran-fitdistrplus:armhf 463s Re-Instated r-cran-ggrepel:armhf 463s Re-Instated r-cran-ggridges:armhf 463s Re-Instated r-cran-curl:armhf 463s Re-Instated r-cran-jsonlite:armhf 463s Re-Instated r-cran-mime:armhf 463s Re-Instated r-cran-sys:armhf 463s Re-Instated r-cran-askpass:armhf 463s Re-Instated r-cran-openssl:armhf 463s Re-Instated r-cran-httr:armhf 463s Re-Instated r-cran-ica:armhf 463s Re-Instated r-cran-cpp11:armhf 463s Re-Instated libsuitesparseconfig7:armhf 463s Re-Instated libamd3:armhf 463s Re-Instated libcolamd3:armhf 463s Re-Instated libltdl7:armhf 463s Re-Instated libglpk40:armhf 463s Re-Instated r-cran-igraph:armhf 463s Re-Instated r-cran-irlba:armhf 463s Re-Instated r-cran-kernsmooth:armhf 463s Re-Instated r-cran-rcpptoml:armhf 463s Re-Instated r-cran-rprojroot:armhf 463s Re-Instated r-cran-here:armhf 463s Re-Instated r-cran-png:armhf 463s Re-Instated r-cran-rappdirs:armhf 463s Re-Instated r-cran-reticulate:armhf 463s Re-Instated r-cran-leiden:armhf 463s Re-Instated r-cran-zoo:armhf 463s Re-Instated r-cran-lmtest:armhf 463s Re-Instated r-cran-matrixstats:armhf 463s Re-Instated r-cran-later:armhf 463s Re-Instated r-cran-fastmap:armhf 463s Re-Instated r-cran-promises:armhf 463s Re-Instated r-cran-httpuv:armhf 463s Re-Instated r-cran-xtable:armhf 463s Re-Instated r-cran-base64enc:armhf 463s Re-Instated r-cran-htmltools:armhf 463s Re-Instated r-cran-fontawesome:armhf 463s Re-Instated r-cran-sourcetools:armhf 463s Re-Instated r-cran-crayon:armhf 463s Re-Instated r-cran-commonmark:armhf 463s Re-Instated r-cran-cachem:armhf 463s Re-Instated libjs-jquery:armhf 463s Re-Instated r-cran-jquerylib:armhf 463s Re-Instated r-cran-memoise:armhf 463s Re-Instated r-cran-fs:armhf 463s Re-Instated r-cran-sass:armhf 463s Re-Instated node-bootstrap-sass:armhf 463s Re-Instated javascript-common:armhf 463s Re-Instated libjs-popper.js:armhf 463s Re-Instated libjs-bootstrap4:armhf 463s Re-Instated r-cran-bslib:armhf 463s Re-Instated fonts-glyphicons-halflings:armhf 463s Re-Instated libjs-bootstrap:armhf 463s Re-Instated libjs-json:armhf 463s Re-Instated libjs-jquery-datatables:armhf 463s Re-Instated libjs-es5-shim:armhf 463s Re-Instated libjs-jquery-ui:armhf 463s Re-Instated libjs-highlight.js:armhf 463s Re-Instated libjs-twitter-bootstrap-datepicker:armhf 463s Re-Instated libjs-sifter.js:armhf 463s Re-Instated libjs-microplugin.js:armhf 463s Re-Instated libjs-jquery-selectize.js:armhf 463s Re-Instated libjs-d3:armhf 463s Re-Instated node-normalize.css:armhf 463s Re-Instated fonts-font-awesome:armhf 463s Re-Instated node-html5shiv:armhf 463s Re-Instated r-cran-shiny:armhf 463s Re-Instated r-cran-miniui:armhf 463s Re-Instated r-cran-patchwork:armhf 463s Re-Instated r-cran-pbapply:armhf 463s Re-Instated r-cran-evaluate:armhf 463s Re-Instated r-cran-xfun:armhf 463s Re-Instated r-cran-highr:armhf 463s Re-Instated r-cran-yaml:armhf 463s Re-Instated fonts-mathjax:armhf 463s Re-Instated libjs-mathjax:armhf 463s Re-Instated r-cran-knitr:armhf 463s Re-Instated r-cran-tinytex:armhf 463s Re-Instated libjs-modernizr:armhf 463s Re-Instated libjs-prettify:armhf 463s Re-Instated pandoc-data:armhf 463s Re-Instated liblua5.4-0:armhf 463s Re-Instated pandoc:armhf 463s Re-Instated r-cran-rmarkdown:armhf 463s Re-Instated r-cran-htmlwidgets:armhf 463s Re-Instated r-cran-tidyselect:armhf 463s Re-Instated r-cran-dplyr:armhf 463s Re-Instated r-cran-purrr:armhf 463s Re-Instated r-cran-tidyr:armhf 463s Re-Instated r-cran-lazyeval:armhf 463s Re-Instated r-cran-crosstalk:armhf 463s Re-Instated r-cran-shinyjs:armhf 463s Re-Instated r-cran-colourpicker:armhf 463s Re-Instated r-cran-plotly:armhf 463s Re-Instated r-cran-rann:armhf 463s Re-Instated r-cran-rcppannoy:armhf 463s Re-Instated r-cran-rcpphnsw:armhf 463s Re-Instated r-cran-gtools:armhf 463s Re-Instated r-cran-bitops:armhf 463s Re-Instated r-cran-catools:armhf 463s Re-Instated r-cran-gdata:armhf 463s Re-Instated r-cran-gplots:armhf 463s Re-Instated r-cran-rocr:armhf 463s Re-Instated r-cran-rspectra:armhf 463s Re-Instated r-cran-rtsne:armhf 463s Re-Instated r-cran-scattermore:armhf 463s Re-Instated r-cran-plyr:armhf 463s Re-Instated r-cran-reshape2:armhf 463s Re-Instated r-cran-gridextra:armhf 463s Re-Instated r-cran-rcpparmadillo:armhf 463s Re-Instated r-cran-sctransform:armhf 463s Re-Instated r-cran-spatstat.utils:armhf 463s Re-Instated r-cran-spatstat.data:armhf 463s Re-Instated r-cran-deldir:armhf 463s Re-Instated r-cran-polyclip:armhf 463s Re-Instated r-cran-spatstat.geom:armhf 463s Re-Instated r-cran-spatstat.random:armhf 463s Re-Instated r-cran-abind:armhf 463s Re-Instated r-cran-tensor:armhf 463s Re-Instated r-cran-spatstat.sparse:armhf 463s Re-Instated r-cran-goftest:armhf 463s Re-Instated r-cran-spatstat.explore:armhf 463s Re-Instated r-cran-fnn:armhf 463s Re-Instated r-cran-rcppprogress:armhf 463s Re-Instated libasan8:armhf 463s Re-Instated libubsan1:armhf 463s Re-Instated libgcc-14-dev:armhf 463s Re-Instated libc-dev-bin:armhf 463s Re-Instated linux-libc-dev:armhf 463s Re-Instated libcrypt-dev:armhf 463s Re-Instated rpcsvc-proto:armhf 463s Re-Instated libc6-dev:armhf 463s Re-Instated libstdc++-14-dev:armhf 463s Re-Instated libboost1.83-dev:armhf 463s Re-Instated libboost-dev:armhf 463s Re-Instated r-cran-bh:armhf 463s Re-Instated r-cran-sitmo:armhf 463s Re-Instated r-cran-dqrng:armhf 463s Re-Instated r-cran-uwot:armhf 463s Re-Instated r-cran-seurat:armhf 463s Broken autopkgtest-satdep:armhf Depends on r-cran-ape:armhf < none | 5.8-1 @un uH > 463s Considering r-cran-ape:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 463s Re-Instated r-cran-ape:armhf 463s Broken autopkgtest-satdep:armhf Depends on r-cran-rsvd:armhf < none | 1.0.5-1 @un uH > 463s Considering r-cran-rsvd:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 463s Re-Instated r-cran-rsvd:armhf 463s Broken autopkgtest-satdep:armhf Depends on r-cran-testthat:armhf < none | 3.2.1.1-1 @un uH > 463s Considering r-cran-testthat:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 463s Re-Instated r-cran-brio:armhf 463s Re-Instated r-cran-ps:armhf 463s Re-Instated r-cran-processx:armhf 463s Re-Instated r-cran-callr:armhf 463s Re-Instated r-cran-desc:armhf 463s Re-Instated r-cran-pkgbuild:armhf 463s Re-Instated r-cran-pkgload:armhf 463s Re-Instated r-cran-praise:armhf 463s Re-Instated r-cran-diffobj:armhf 463s Re-Instated r-cran-rematch2:armhf 463s Re-Instated r-cran-waldo:armhf 463s Re-Instated r-cran-testthat:armhf 463s Broken autopkgtest-satdep:armhf Depends on r-cran-hdf5r:armhf < none | 1.3.9+dfsg-1build2 @un uH > 463s Considering r-cran-hdf5r:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 463s Re-Instated r-cran-bit:armhf 463s Re-Instated r-cran-bit64:armhf 463s Re-Instated libaec0:armhf 463s Re-Instated libsz2:armhf 463s Re-Instated libhdf5-103-1t64:armhf 463s Re-Instated libhdf5-hl-100t64:armhf 463s Re-Instated r-cran-hdf5r:armhf 463s Broken autopkgtest-satdep:armhf Depends on r-bioc-s4vectors:armhf < none | 0.42.1+dfsg-2 @un uH > 463s Considering r-bioc-s4vectors:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 463s Re-Instated r-bioc-biocgenerics:armhf 463s Re-Instated r-bioc-s4vectors:armhf 463s Broken autopkgtest-satdep:armhf Depends on r-bioc-summarizedexperiment:armhf < none | 1.34.0+dfsg-1 @un uH > 463s Considering r-bioc-summarizedexperiment:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 463s Re-Instated r-bioc-matrixgenerics:armhf 463s Reinst Failed early because of r-bioc-genomicranges:armhf 463s Broken autopkgtest-satdep:armhf Depends on r-bioc-singlecellexperiment:armhf < none | 1.26.0+ds-1 @un uH > 463s Considering r-bioc-singlecellexperiment:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 463s Reinst Failed because of r-bioc-summarizedexperiment:armhf 463s Broken autopkgtest-satdep:armhf Depends on r-bioc-deseq2:armhf < none @un H > 463s Broken autopkgtest-satdep:armhf Depends on r-bioc-genomicranges:armhf < none @un H > 463s Broken autopkgtest-satdep:armhf Depends on r-bioc-genomeinfodb:armhf < none | 1.40.1+dfsg-1 @un uH > 463s Considering r-bioc-genomeinfodb:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 463s Reinst Failed early because of r-bioc-iranges:armhf 463s Broken autopkgtest-satdep:armhf Depends on r-bioc-iranges:armhf < none @un H > 463s Broken autopkgtest-satdep:armhf Depends on r-bioc-rtracklayer:armhf < none @un H > 463s Broken autopkgtest-satdep:armhf Depends on r-bioc-monocle:armhf < none @un H > 463s Broken autopkgtest-satdep:armhf Depends on r-bioc-biobase:armhf < none | 2.64.0-4 @un uH > 463s Considering r-bioc-biobase:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 463s Re-Instated r-bioc-biobase:armhf 463s Broken autopkgtest-satdep:armhf Depends on r-cran-vgam:armhf < none | 1.1-9-1 @un uH > 463s Considering r-cran-vgam:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 463s Re-Instated r-cran-vgam:armhf 463s Broken autopkgtest-satdep:armhf Depends on r-bioc-limma:armhf < none @un H > 463s Broken autopkgtest-satdep:armhf Depends on r-cran-metap:armhf < none | 1.9-1 @un uH > 463s Considering r-cran-metap:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 463s Re-Instated r-cran-rbibutils:armhf 463s Re-Instated r-cran-rdpack:armhf 463s Re-Instated r-cran-mnormt:armhf 463s Re-Instated r-cran-numderiv:armhf 463s Re-Instated r-cran-sparsem:armhf 463s Re-Instated r-cran-matrixmodels:armhf 463s Re-Instated r-cran-class:armhf 463s Re-Instated r-cran-proxy:armhf 463s Re-Instated r-cran-e1071:armhf 463s Re-Instated r-cran-iterators:armhf 463s Re-Instated r-cran-foreach:armhf 463s Re-Instated r-cran-modelmetrics:armhf 463s Re-Instated r-cran-proc:armhf 463s Re-Instated r-cran-tzdb:armhf 463s Re-Instated r-cran-clock:armhf 463s Re-Instated r-cran-ellipsis:armhf 463s Re-Instated r-cran-gower:armhf 463s Re-Instated r-cran-hardhat:armhf 463s Re-Instated r-cran-rpart:armhf 463s Re-Instated r-cran-nnet:armhf 463s Re-Instated r-cran-shape:armhf 463s Re-Instated r-cran-diagram:armhf 463s Re-Instated r-cran-squarem:armhf 463s Re-Instated r-cran-lava:armhf 463s Re-Instated r-cran-prodlim:armhf 463s Re-Instated r-cran-ipred:armhf 463s Re-Instated r-cran-timechange:armhf 463s Re-Instated r-cran-lubridate:armhf 463s Re-Instated r-cran-timedate:armhf 463s Re-Instated r-cran-recipes:armhf 463s Re-Instated r-cran-caret:armhf 463s Re-Instated r-cran-conquer:armhf 463s Re-Instated r-cran-quantreg:armhf 463s Re-Instated r-cran-sn:armhf 463s Re-Instated r-cran-mvtnorm:armhf 463s Re-Instated r-cran-tfisher:armhf 463s Re-Instated r-cran-plotrix:armhf 463s Reinst Failed early because of r-bioc-multtest:armhf 463s Reinst Failed because of r-cran-mutoss:armhf 463s Considering r-cran-metap:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 463s Broken autopkgtest-satdep:armhf Depends on r-cran-mixtools:armhf < none | 2.0.0-1 @un uH > 463s Considering r-cran-mixtools:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 463s Re-Instated r-cran-kernlab:armhf 463s Re-Instated r-cran-segmented:armhf 463s Re-Instated r-cran-mixtools:armhf 463s Broken autopkgtest-satdep:armhf Depends on r-cran-ggrastr:armhf < none | 1.0.2-1 @un uH > 463s Considering r-cran-ggrastr:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 463s Re-Instated r-cran-cairo:armhf 463s Re-Instated r-cran-beeswarm:armhf 463s Re-Instated r-cran-vipor:armhf 463s Re-Instated r-cran-ggbeeswarm:armhf 463s Re-Instated r-cran-systemfonts:armhf 463s Re-Instated r-cran-textshaping:armhf 463s Re-Instated r-cran-ragg:armhf 463s Re-Instated r-cran-ggrastr:armhf 463s Broken autopkgtest-satdep:armhf Depends on r-cran-r.utils:armhf < none | 2.12.3-1 @un uH > 463s Considering r-cran-r.utils:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 463s Re-Instated r-cran-r.methodss3:armhf 463s Re-Instated r-cran-r.oo:armhf 463s Re-Instated r-cran-r.utils:armhf 463s Broken autopkgtest-satdep:armhf Depends on r-bioc-delayedarray:armhf < none @un H > 463s Done 463s Some packages could not be installed. This may mean that you have 463s requested an impossible situation or if you are using the unstable 463s distribution that some required packages have not yet been created 463s or been moved out of Incoming. 463s The following information may help to resolve the situation: 463s 463s The following packages have unmet dependencies: 463s autopkgtest-satdep : Depends: r-bioc-summarizedexperiment but it is not going to be installed 463s Depends: r-bioc-singlecellexperiment but it is not going to be installed 463s Depends: r-bioc-deseq2 but it is not installable 463s Depends: r-bioc-genomicranges but it is not installable 463s Depends: r-bioc-genomeinfodb but it is not going to be installed 463s Depends: r-bioc-iranges but it is not installable 463s Depends: r-bioc-rtracklayer but it is not installable 463s Depends: r-bioc-monocle but it is not installable 463s Depends: r-bioc-limma but it is not installable 463s Depends: r-cran-metap but it is not going to be installed 463s Depends: r-bioc-delayedarray but it is not installable 463s E: Unable to correct problems, you have held broken packages. 464s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 470s Reading package lists... 470s Building dependency tree... 470s Reading state information... 471s Starting pkgProblemResolver with broken count: 1 471s Starting 2 pkgProblemResolver with broken count: 1 471s Investigating (0) autopkgtest-satdep:armhf < none -> 0 @un puN Ib > 471s Broken autopkgtest-satdep:armhf Depends on r-cran-seurat:armhf < none | 5.1.0-1 @un uH > 471s Considering r-cran-seurat:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 471s Re-Instated zip:armhf 471s Re-Instated unzip:armhf 471s Re-Instated libpaper1:armhf 471s Re-Instated libpaper-utils:armhf 471s Re-Instated xdg-utils:armhf 471s Re-Instated libblas3:armhf 471s Re-Instated libfreetype6:armhf 471s Re-Instated fonts-dejavu-mono:armhf 471s Re-Instated fonts-dejavu-core:armhf 471s Re-Instated fontconfig-config:armhf 471s Re-Instated libfontconfig1:armhf 471s Re-Instated libpixman-1-0:armhf 471s Re-Instated libxcb-render0:armhf 471s Re-Instated libxcb-shm0:armhf 471s Re-Instated libxrender1:armhf 471s Re-Instated libcairo2:armhf 471s Re-Instated libdeflate0:armhf 471s Re-Instated libgomp1:armhf 471s Re-Instated libjpeg-turbo8:armhf 471s Re-Instated libjpeg8:armhf 471s Re-Instated libgfortran5:armhf 471s Re-Instated liblapack3:armhf 471s Re-Instated fontconfig:armhf 471s Re-Instated libgraphite2-3:armhf 471s Re-Instated libharfbuzz0b:armhf 471s Re-Instated libthai-data:armhf 471s Re-Instated libdatrie1:armhf 471s Re-Instated libthai0:armhf 471s Re-Instated libpango-1.0-0:armhf 471s Re-Instated libpangoft2-1.0-0:armhf 471s Re-Instated libpangocairo-1.0-0:armhf 471s Re-Instated libtcl8.6:armhf 471s Re-Instated libjbig0:armhf 471s Re-Instated liblerc4:armhf 471s Re-Instated libsharpyuv0:armhf 471s Re-Instated libwebp7:armhf 471s Re-Instated libtiff6:armhf 471s Re-Instated libxft2:armhf 471s Re-Instated x11-common:armhf 471s Re-Instated libxss1:armhf 471s Re-Instated libtk8.6:armhf 471s Re-Instated libice6:armhf 471s Re-Instated libsm6:armhf 471s Re-Instated libxt6t64:armhf 471s Re-Instated r-base-core:armhf 471s Re-Instated r-cran-lattice:armhf 471s Re-Instated r-cran-sp:armhf 471s Re-Instated r-cran-digest:armhf 471s Re-Instated r-cran-codetools:armhf 471s Re-Instated r-cran-globals:armhf 471s Re-Instated r-cran-listenv:armhf 471s Re-Instated r-cran-parallelly:armhf 471s Re-Instated r-cran-future:armhf 471s Re-Instated r-cran-future.apply:armhf 471s Re-Instated r-cran-matrix:armhf 471s Re-Instated r-cran-progressr:armhf 471s Re-Instated r-cran-littler:armhf 471s Re-Instated littler:armhf 471s Re-Instated r-cran-pkgkitten:armhf 471s Re-Instated r-cran-rcpp:armhf 471s Re-Instated r-cran-rlang:armhf 471s Re-Instated r-cran-dotcall64:armhf 471s Re-Instated r-cran-spam:armhf 471s Re-Instated r-cran-cli:armhf 471s Re-Instated r-cran-glue:armhf 471s Re-Instated r-cran-lifecycle:armhf 471s Re-Instated r-cran-generics:armhf 471s Re-Instated r-cran-rcppeigen:armhf 471s Re-Instated r-cran-seuratobject:armhf 471s Re-Instated r-cran-cluster:armhf 471s Re-Instated r-cran-gtable:armhf 471s Re-Instated r-cran-isoband:armhf 471s Re-Instated r-cran-mass:armhf 471s Re-Instated r-cran-nlme:armhf 471s Re-Instated r-cran-mgcv:armhf 471s Re-Instated r-cran-farver:armhf 471s Re-Instated r-cran-labeling:armhf 471s Re-Instated r-cran-colorspace:armhf 471s Re-Instated r-cran-munsell:armhf 471s Re-Instated r-cran-r6:armhf 471s Re-Instated r-cran-rcolorbrewer:armhf 471s Re-Instated r-cran-viridislite:armhf 471s Re-Instated r-cran-scales:armhf 471s Re-Instated r-cran-fansi:armhf 471s Re-Instated r-cran-magrittr:armhf 471s Re-Instated r-cran-utf8:armhf 471s Re-Instated r-cran-vctrs:armhf 471s Re-Instated r-cran-pillar:armhf 471s Re-Instated r-cran-pkgconfig:armhf 471s Re-Instated r-cran-tibble:armhf 471s Re-Instated r-cran-withr:armhf 471s Re-Instated r-cran-ggplot2:armhf 471s Re-Instated r-cran-cowplot:armhf 471s Re-Instated r-cran-data.table:armhf 471s Re-Instated r-cran-stringi:armhf 471s Re-Instated r-cran-stringr:armhf 471s Re-Instated r-cran-fastdummies:armhf 471s Re-Instated r-cran-survival:armhf 471s Re-Instated r-cran-fitdistrplus:armhf 471s Re-Instated r-cran-ggrepel:armhf 471s Re-Instated r-cran-ggridges:armhf 471s Re-Instated r-cran-curl:armhf 471s Re-Instated r-cran-jsonlite:armhf 471s Re-Instated r-cran-mime:armhf 471s Re-Instated r-cran-sys:armhf 471s Re-Instated r-cran-askpass:armhf 471s Re-Instated r-cran-openssl:armhf 471s Re-Instated r-cran-httr:armhf 471s Re-Instated r-cran-ica:armhf 471s Re-Instated r-cran-cpp11:armhf 471s Re-Instated libsuitesparseconfig7:armhf 471s Re-Instated libamd3:armhf 471s Re-Instated libcolamd3:armhf 471s Re-Instated libltdl7:armhf 471s Re-Instated libglpk40:armhf 471s Re-Instated r-cran-igraph:armhf 471s Re-Instated r-cran-irlba:armhf 471s Re-Instated r-cran-kernsmooth:armhf 471s Re-Instated r-cran-rcpptoml:armhf 471s Re-Instated r-cran-rprojroot:armhf 471s Re-Instated r-cran-here:armhf 471s Re-Instated r-cran-png:armhf 471s Re-Instated r-cran-rappdirs:armhf 471s Re-Instated r-cran-reticulate:armhf 471s Re-Instated r-cran-leiden:armhf 471s Re-Instated r-cran-zoo:armhf 471s Re-Instated r-cran-lmtest:armhf 471s Re-Instated r-cran-matrixstats:armhf 471s Re-Instated r-cran-later:armhf 471s Re-Instated r-cran-fastmap:armhf 471s Re-Instated r-cran-promises:armhf 471s Re-Instated r-cran-httpuv:armhf 471s Re-Instated r-cran-xtable:armhf 471s Re-Instated r-cran-base64enc:armhf 471s Re-Instated r-cran-htmltools:armhf 471s Re-Instated r-cran-fontawesome:armhf 471s Re-Instated r-cran-sourcetools:armhf 471s Re-Instated r-cran-crayon:armhf 471s Re-Instated r-cran-commonmark:armhf 471s Re-Instated r-cran-cachem:armhf 471s Re-Instated libjs-jquery:armhf 471s Re-Instated r-cran-jquerylib:armhf 471s Re-Instated r-cran-memoise:armhf 471s Re-Instated r-cran-fs:armhf 471s Re-Instated r-cran-sass:armhf 471s Re-Instated node-bootstrap-sass:armhf 471s Re-Instated javascript-common:armhf 471s Re-Instated libjs-popper.js:armhf 471s Re-Instated libjs-bootstrap4:armhf 471s Re-Instated r-cran-bslib:armhf 471s Re-Instated fonts-glyphicons-halflings:armhf 471s Re-Instated libjs-bootstrap:armhf 471s Re-Instated libjs-json:armhf 471s Re-Instated libjs-jquery-datatables:armhf 471s Re-Instated libjs-es5-shim:armhf 471s Re-Instated libjs-jquery-ui:armhf 471s Re-Instated libjs-highlight.js:armhf 471s Re-Instated libjs-twitter-bootstrap-datepicker:armhf 471s Re-Instated libjs-sifter.js:armhf 471s Re-Instated libjs-microplugin.js:armhf 471s Re-Instated libjs-jquery-selectize.js:armhf 471s Re-Instated libjs-d3:armhf 471s Re-Instated node-normalize.css:armhf 471s Re-Instated fonts-font-awesome:armhf 471s Re-Instated node-html5shiv:armhf 471s Re-Instated r-cran-shiny:armhf 471s Re-Instated r-cran-miniui:armhf 471s Re-Instated r-cran-patchwork:armhf 471s Re-Instated r-cran-pbapply:armhf 471s Re-Instated r-cran-evaluate:armhf 471s Re-Instated r-cran-xfun:armhf 471s Re-Instated r-cran-highr:armhf 471s Re-Instated r-cran-yaml:armhf 471s Re-Instated fonts-mathjax:armhf 471s Re-Instated libjs-mathjax:armhf 471s Re-Instated r-cran-knitr:armhf 471s Re-Instated r-cran-tinytex:armhf 471s Re-Instated libjs-modernizr:armhf 471s Re-Instated libjs-prettify:armhf 471s Re-Instated pandoc-data:armhf 471s Re-Instated liblua5.4-0:armhf 471s Re-Instated pandoc:armhf 471s Re-Instated r-cran-rmarkdown:armhf 471s Re-Instated r-cran-htmlwidgets:armhf 471s Re-Instated r-cran-tidyselect:armhf 471s Re-Instated r-cran-dplyr:armhf 471s Re-Instated r-cran-purrr:armhf 471s Re-Instated r-cran-tidyr:armhf 471s Re-Instated r-cran-lazyeval:armhf 471s Re-Instated r-cran-crosstalk:armhf 471s Re-Instated r-cran-shinyjs:armhf 471s Re-Instated r-cran-colourpicker:armhf 471s Re-Instated r-cran-plotly:armhf 471s Re-Instated r-cran-rann:armhf 471s Re-Instated r-cran-rcppannoy:armhf 471s Re-Instated r-cran-rcpphnsw:armhf 471s Re-Instated r-cran-gtools:armhf 471s Re-Instated r-cran-bitops:armhf 471s Re-Instated r-cran-catools:armhf 471s Re-Instated r-cran-gdata:armhf 471s Re-Instated r-cran-gplots:armhf 471s Re-Instated r-cran-rocr:armhf 471s Re-Instated r-cran-rspectra:armhf 471s Re-Instated r-cran-rtsne:armhf 471s Re-Instated r-cran-scattermore:armhf 471s Re-Instated r-cran-plyr:armhf 471s Re-Instated r-cran-reshape2:armhf 471s Re-Instated r-cran-gridextra:armhf 471s Re-Instated r-cran-rcpparmadillo:armhf 471s Re-Instated r-cran-sctransform:armhf 471s Re-Instated r-cran-spatstat.utils:armhf 471s Re-Instated r-cran-spatstat.data:armhf 471s Re-Instated r-cran-deldir:armhf 471s Re-Instated r-cran-polyclip:armhf 471s Re-Instated r-cran-spatstat.geom:armhf 471s Re-Instated r-cran-spatstat.random:armhf 471s Re-Instated r-cran-abind:armhf 471s Re-Instated r-cran-tensor:armhf 471s Re-Instated r-cran-spatstat.sparse:armhf 471s Re-Instated r-cran-goftest:armhf 471s Re-Instated r-cran-spatstat.explore:armhf 471s Re-Instated r-cran-fnn:armhf 471s Re-Instated libasan8:armhf 471s Re-Instated libubsan1:armhf 471s Re-Instated libgcc-14-dev:armhf 471s Re-Instated libc-dev-bin:armhf 471s Re-Instated linux-libc-dev:armhf 471s Re-Instated libcrypt1:armhf 471s Re-Instated libcrypt-dev:armhf 471s Re-Instated rpcsvc-proto:armhf 471s Re-Instated libc6-dev:armhf 471s Re-Instated libstdc++-14-dev:armhf 471s Re-Instated libboost1.83-dev:armhf 471s Re-Instated libboost-dev:armhf 471s Re-Instated r-cran-bh:armhf 471s Re-Instated r-cran-sitmo:armhf 471s Re-Instated r-cran-dqrng:armhf 471s Re-Instated r-cran-rcppprogress:armhf 471s Re-Instated r-cran-uwot:armhf 471s Re-Instated r-cran-seurat:armhf 471s Broken autopkgtest-satdep:armhf Depends on r-cran-ape:armhf < none | 5.8-1 @un uH > 471s Considering r-cran-ape:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 471s Re-Instated r-cran-ape:armhf 471s Broken autopkgtest-satdep:armhf Depends on r-cran-rsvd:armhf < none | 1.0.5-1 @un uH > 471s Considering r-cran-rsvd:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 471s Re-Instated r-cran-rsvd:armhf 471s Broken autopkgtest-satdep:armhf Depends on r-cran-testthat:armhf < none | 3.2.1.1-1 @un uH > 471s Considering r-cran-testthat:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 471s Re-Instated r-cran-brio:armhf 471s Re-Instated r-cran-ps:armhf 471s Re-Instated r-cran-processx:armhf 471s Re-Instated r-cran-callr:armhf 471s Re-Instated r-cran-desc:armhf 471s Re-Instated r-cran-pkgbuild:armhf 471s Re-Instated r-cran-pkgload:armhf 471s Re-Instated r-cran-praise:armhf 471s Re-Instated r-cran-diffobj:armhf 471s Re-Instated r-cran-rematch2:armhf 471s Re-Instated r-cran-waldo:armhf 471s Re-Instated r-cran-testthat:armhf 471s Broken autopkgtest-satdep:armhf Depends on r-cran-hdf5r:armhf < none | 1.3.11+dfsg-1 @un uH > 471s Considering r-cran-hdf5r:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 471s Re-Instated r-cran-bit:armhf 471s Re-Instated r-cran-bit64:armhf 471s Re-Instated libaec0:armhf 471s Re-Instated libsz2:armhf 471s Re-Instated libhdf5-103-1t64:armhf 471s Re-Instated libhdf5-hl-100t64:armhf 471s Re-Instated r-cran-hdf5r:armhf 471s Broken autopkgtest-satdep:armhf Depends on r-bioc-s4vectors:armhf < none | 0.42.1+dfsg-2 @un uH > 471s Considering r-bioc-s4vectors:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 471s Re-Instated r-bioc-biocgenerics:armhf 471s Re-Instated r-bioc-s4vectors:armhf 471s Broken autopkgtest-satdep:armhf Depends on r-bioc-summarizedexperiment:armhf < none | 1.34.0+dfsg-1 @un uH > 471s Considering r-bioc-summarizedexperiment:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 471s Re-Instated r-bioc-matrixgenerics:armhf 471s Reinst Failed early because of r-bioc-genomicranges:armhf 471s Broken autopkgtest-satdep:armhf Depends on r-bioc-singlecellexperiment:armhf < none | 1.26.0+ds-1 @un uH > 471s Considering r-bioc-singlecellexperiment:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 471s Reinst Failed because of r-bioc-summarizedexperiment:armhf 471s Broken autopkgtest-satdep:armhf Depends on r-bioc-deseq2:armhf < none @un H > 471s Broken autopkgtest-satdep:armhf Depends on r-bioc-genomicranges:armhf < none @un H > 471s Broken autopkgtest-satdep:armhf Depends on r-bioc-genomeinfodb:armhf < none | 1.40.1+dfsg-1 @un uH > 471s Considering r-bioc-genomeinfodb:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 471s Reinst Failed early because of r-bioc-iranges:armhf 471s Broken autopkgtest-satdep:armhf Depends on r-bioc-iranges:armhf < none @un H > 471s Broken autopkgtest-satdep:armhf Depends on r-bioc-rtracklayer:armhf < none @un H > 471s Broken autopkgtest-satdep:armhf Depends on r-bioc-monocle:armhf < none @un H > 471s Broken autopkgtest-satdep:armhf Depends on r-bioc-biobase:armhf < none | 2.64.0-4 @un uH > 471s Considering r-bioc-biobase:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 471s Re-Instated r-bioc-biobase:armhf 471s Broken autopkgtest-satdep:armhf Depends on r-cran-vgam:armhf < none | 1.1-11-1 @un uH > 471s Considering r-cran-vgam:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 471s Re-Instated r-cran-vgam:armhf 471s Broken autopkgtest-satdep:armhf Depends on r-bioc-limma:armhf < none @un H > 471s Broken autopkgtest-satdep:armhf Depends on r-cran-metap:armhf < none | 1.11-1 @un uH > 471s Considering r-cran-metap:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 471s Re-Instated r-cran-rbibutils:armhf 471s Re-Instated r-cran-rdpack:armhf 471s Re-Instated r-cran-mnormt:armhf 471s Re-Instated r-cran-numderiv:armhf 471s Re-Instated r-cran-sparsem:armhf 471s Re-Instated r-cran-matrixmodels:armhf 471s Re-Instated r-cran-class:armhf 471s Re-Instated r-cran-proxy:armhf 471s Re-Instated r-cran-e1071:armhf 471s Re-Instated r-cran-iterators:armhf 471s Re-Instated r-cran-foreach:armhf 471s Re-Instated r-cran-modelmetrics:armhf 471s Re-Instated r-cran-proc:armhf 471s Re-Instated r-cran-tzdb:armhf 471s Re-Instated r-cran-clock:armhf 471s Re-Instated r-cran-gower:armhf 471s Re-Instated r-cran-hardhat:armhf 471s Re-Instated r-cran-rpart:armhf 471s Re-Instated r-cran-nnet:armhf 471s Re-Instated r-cran-shape:armhf 471s Re-Instated r-cran-diagram:armhf 471s Re-Instated r-cran-squarem:armhf 471s Re-Instated r-cran-lava:armhf 471s Re-Instated r-cran-prodlim:armhf 471s Re-Instated r-cran-ipred:armhf 471s Re-Instated r-cran-timechange:armhf 471s Re-Instated r-cran-lubridate:armhf 471s Re-Instated r-cran-timedate:armhf 471s Re-Instated r-cran-recipes:armhf 471s Re-Instated r-cran-caret:armhf 471s Re-Instated r-cran-conquer:armhf 471s Re-Instated r-cran-quantreg:armhf 471s Re-Instated r-cran-sn:armhf 471s Re-Instated r-cran-mvtnorm:armhf 471s Re-Instated r-cran-tfisher:armhf 471s Re-Instated r-cran-plotrix:armhf 471s Reinst Failed early because of r-bioc-multtest:armhf 471s Reinst Failed because of r-cran-mutoss:armhf 471s Considering r-cran-metap:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 471s Broken autopkgtest-satdep:armhf Depends on r-cran-mixtools:armhf < none | 2.0.0-1 @un uH > 471s Considering r-cran-mixtools:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 471s Re-Instated r-cran-kernlab:armhf 471s Re-Instated r-cran-segmented:armhf 471s Re-Instated r-cran-mixtools:armhf 471s Broken autopkgtest-satdep:armhf Depends on r-cran-ggrastr:armhf < none | 1.0.2-1 @un uH > 471s Considering r-cran-ggrastr:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 471s Re-Instated r-cran-cairo:armhf 471s Re-Instated r-cran-beeswarm:armhf 471s Re-Instated r-cran-vipor:armhf 471s Re-Instated r-cran-ggbeeswarm:armhf 471s Re-Instated r-cran-systemfonts:armhf 471s Re-Instated r-cran-textshaping:armhf 471s Re-Instated r-cran-ragg:armhf 471s Re-Instated r-cran-ggrastr:armhf 471s Broken autopkgtest-satdep:armhf Depends on r-cran-r.utils:armhf < none | 2.12.3-1 @un uH > 471s Considering r-cran-r.utils:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 471s Re-Instated r-cran-r.methodss3:armhf 471s Re-Instated r-cran-r.oo:armhf 471s Re-Instated r-cran-r.utils:armhf 471s Broken autopkgtest-satdep:armhf Depends on r-bioc-delayedarray:armhf < none @un H > 471s Done 471s Some packages could not be installed. This may mean that you have 471s requested an impossible situation or if you are using the unstable 471s distribution that some required packages have not yet been created 471s or been moved out of Incoming. 471s The following information may help to resolve the situation: 471s 471s The following packages have unmet dependencies: 471s autopkgtest-satdep : Depends: r-bioc-summarizedexperiment but it is not going to be installed 471s Depends: r-bioc-singlecellexperiment but it is not going to be installed 471s Depends: r-bioc-deseq2 but it is not installable 471s Depends: r-bioc-genomicranges but it is not installable 471s Depends: r-bioc-genomeinfodb but it is not going to be installed 471s Depends: r-bioc-iranges but it is not installable 471s Depends: r-bioc-rtracklayer but it is not installable 471s Depends: r-bioc-monocle but it is not installable 471s Depends: r-bioc-limma but it is not installable 471s Depends: r-cran-metap but it is not going to be installed 471s Depends: r-bioc-delayedarray but it is not installable 471s E: Unable to correct problems, you have held broken packages. 471s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 474s Reading package lists... 475s Building dependency tree... 475s Reading state information... 475s Package r-bioc-deseq2 is not available, but is referred to by another package. 475s This may mean that the package is missing, has been obsoleted, or 475s is only available from another source 475s 475s Package r-bioc-limma is not available, but is referred to by another package. 475s This may mean that the package is missing, has been obsoleted, or 475s is only available from another source 475s 475s Package r-bioc-rtracklayer is not available, but is referred to by another package. 475s This may mean that the package is missing, has been obsoleted, or 475s is only available from another source 475s 475s Package r-bioc-genomicranges is not available, but is referred to by another package. 475s This may mean that the package is missing, has been obsoleted, or 475s is only available from another source 475s 475s Package r-bioc-iranges is not available, but is referred to by another package. 475s This may mean that the package is missing, has been obsoleted, or 475s is only available from another source 475s 475s Package r-bioc-delayedarray is not available, but is referred to by another package. 475s This may mean that the package is missing, has been obsoleted, or 475s is only available from another source 475s 475s Package r-bioc-monocle is not available, but is referred to by another package. 475s This may mean that the package is missing, has been obsoleted, or 475s is only available from another source 475s 475s E: Package 'r-bioc-deseq2' has no installation candidate 475s E: Package 'r-bioc-genomicranges' has no installation candidate 475s E: Package 'r-bioc-iranges' has no installation candidate 475s E: Package 'r-bioc-rtracklayer' has no installation candidate 475s E: Package 'r-bioc-monocle' has no installation candidate 475s E: Package 'r-bioc-limma' has no installation candidate 475s E: Package 'r-bioc-delayedarray' has no installation candidate 475s run-unit-test FAIL badpkg 475s blame: r-cran-seurat 475s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 475s autopkgtest [12:31:32]: test pkg-r-autopkgtest: preparing testbed 529s autopkgtest [12:32:26]: testbed dpkg architecture: armhf 531s autopkgtest [12:32:28]: testbed apt version: 2.9.8 531s autopkgtest [12:32:28]: @@@@@@@@@@@@@@@@@@@@ test bed setup 540s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 540s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [177 kB] 541s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2268 kB] 553s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 553s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [31.2 kB] 553s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [209 kB] 554s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [1640 kB] 560s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [23.9 kB] 560s Fetched 4430 kB in 21s (214 kB/s) 560s Reading package lists... 579s tee: /proc/self/fd/2: Permission denied 604s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 604s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 605s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 605s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 606s Reading package lists... 606s Reading package lists... 606s Building dependency tree... 606s Reading state information... 607s Calculating upgrade... 607s The following packages were automatically installed and are no longer required: 607s libperl5.38t64 perl-modules-5.38 607s Use 'apt autoremove' to remove them. 607s The following NEW packages will be installed: 607s libperl5.40 perl-modules-5.40 607s The following packages will be upgraded: 607s base-files distro-info-data fwupd gcc-14-base info install-info iproute2 607s libatomic1 libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 607s libblockdev-mdraid3 libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 607s libblockdev-utils3 libblockdev3 libdb5.3t64 libdw1t64 libelf1t64 libevdev2 607s libftdi1-2 libfwupd2 libgcc-s1 libinih1 libkeyutils1 liblocale-gettext-perl 607s libpipeline1 libsgutils2-1.46-2 libstdc++6 libtext-charwidth-perl 607s libtext-iconv-perl motd-news-config nano perl perl-base python3-configobj 607s python3-json-pointer python3-lazr.uri python3-zipp sg3-utils sg3-utils-udev 607s vim-common vim-tiny xxd 607s 45 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 607s Need to get 19.6 MB of archives. 607s After this operation, 42.8 MB of additional disk space will be used. 607s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf motd-news-config all 13.5ubuntu2 [5274 B] 607s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf base-files armhf 13.5ubuntu2 [68.6 kB] 608s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-6 [3214 kB] 609s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-6 [4140 kB] 609s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-6 [262 kB] 609s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-6 [1674 kB] 610s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf liblocale-gettext-perl armhf 1.07-7build1 [15.0 kB] 610s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-iconv-perl armhf 1.7-8build4 [12.8 kB] 610s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-charwidth-perl armhf 0.04-11build4 [9128 B] 610s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [655 kB] 610s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-7ubuntu1 [7842 B] 610s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-7ubuntu1 [51.2 kB] 610s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-7ubuntu1 [711 kB] 610s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-7ubuntu1 [40.8 kB] 610s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf install-info armhf 7.1.1-1 [61.4 kB] 610s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf distro-info-data all 0.63 [6588 B] 610s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB] 610s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libelf1t64 armhf 0.192-4 [50.2 kB] 610s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf iproute2 armhf 6.10.0-2ubuntu1 [1082 kB] 610s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libkeyutils1 armhf 1.6.3-4ubuntu2 [8712 B] 610s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf vim-tiny armhf 2:9.1.0777-1ubuntu1 [693 kB] 610s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf vim-common all 2:9.1.0777-1ubuntu1 [394 kB] 610s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf xxd armhf 2:9.1.0777-1ubuntu1 [66.8 kB] 610s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf info armhf 7.1.1-1 [126 kB] 610s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libevdev2 armhf 1.13.3+dfsg-1 [29.7 kB] 610s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libpipeline1 armhf 1.5.8-1 [26.9 kB] 610s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.2-1 [276 kB] 610s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd2 armhf 1.9.26-2 [125 kB] 610s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 1.9.26-2 [4404 kB] 612s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-utils3 armhf 3.2.0-2 [17.4 kB] 612s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-crypto3 armhf 3.2.0-2 [22.3 kB] 612s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-fs3 armhf 3.2.0-2 [34.3 kB] 612s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-loop3 armhf 3.2.0-2 [6552 B] 612s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-mdraid3 armhf 3.2.0-2 [13.4 kB] 612s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-nvme3 armhf 3.2.0-2 [17.6 kB] 612s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-part3 armhf 3.2.0-2 [16.5 kB] 612s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-swap3 armhf 3.2.0-2 [8942 B] 612s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev3 armhf 3.2.0-2 [44.2 kB] 612s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7 [25.7 kB] 612s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libinih1 armhf 58-1ubuntu1 [6750 B] 612s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libsgutils2-1.46-2 armhf 1.46-3ubuntu5 [82.5 kB] 613s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf python3-configobj all 5.0.9-1 [33.9 kB] 613s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-2 [8396 B] 613s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.uri all 1.0.6-4 [13.6 kB] 613s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf python3-zipp all 3.20.2-1 [10.1 kB] 613s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils armhf 1.46-3ubuntu5 [816 kB] 613s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils-udev all 1.46-3ubuntu5 [5916 B] 614s Preconfiguring packages ... 614s Fetched 19.6 MB in 6s (3200 kB/s) 614s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 614s Preparing to unpack .../motd-news-config_13.5ubuntu2_all.deb ... 614s Unpacking motd-news-config (13.5ubuntu2) over (13.3ubuntu6) ... 614s Preparing to unpack .../base-files_13.5ubuntu2_armhf.deb ... 614s Unpacking base-files (13.5ubuntu2) over (13.3ubuntu6) ... 614s Setting up base-files (13.5ubuntu2) ... 614s Installing new version of config file /etc/issue ... 614s Installing new version of config file /etc/issue.net ... 614s Installing new version of config file /etc/lsb-release ... 615s motd-news.service is a disabled or a static unit not running, not starting it. 615s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 615s Preparing to unpack .../perl_5.40.0-6_armhf.deb ... 615s Unpacking perl (5.40.0-6) over (5.38.2-5) ... 615s Selecting previously unselected package perl-modules-5.40. 615s Preparing to unpack .../perl-modules-5.40_5.40.0-6_all.deb ... 615s Unpacking perl-modules-5.40 (5.40.0-6) ... 615s Selecting previously unselected package libperl5.40:armhf. 615s Preparing to unpack .../libperl5.40_5.40.0-6_armhf.deb ... 615s Unpacking libperl5.40:armhf (5.40.0-6) ... 615s Preparing to unpack .../perl-base_5.40.0-6_armhf.deb ... 615s Unpacking perl-base (5.40.0-6) over (5.38.2-5) ... 616s Setting up perl-base (5.40.0-6) ... 616s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 616s Preparing to unpack .../liblocale-gettext-perl_1.07-7build1_armhf.deb ... 616s Unpacking liblocale-gettext-perl (1.07-7build1) over (1.07-7) ... 616s Preparing to unpack .../libtext-iconv-perl_1.7-8build4_armhf.deb ... 616s Unpacking libtext-iconv-perl:armhf (1.7-8build4) over (1.7-8build3) ... 616s Preparing to unpack .../libtext-charwidth-perl_0.04-11build4_armhf.deb ... 616s Unpacking libtext-charwidth-perl:armhf (0.04-11build4) over (0.04-11build3) ... 616s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-9_armhf.deb ... 616s Unpacking libdb5.3t64:armhf (5.3.28+dfsg2-9) over (5.3.28+dfsg2-7) ... 616s Setting up libdb5.3t64:armhf (5.3.28+dfsg2-9) ... 616s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 616s Preparing to unpack .../libatomic1_14.2.0-7ubuntu1_armhf.deb ... 616s Unpacking libatomic1:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ... 616s Preparing to unpack .../gcc-14-base_14.2.0-7ubuntu1_armhf.deb ... 616s Unpacking gcc-14-base:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ... 616s Setting up gcc-14-base:armhf (14.2.0-7ubuntu1) ... 616s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 616s Preparing to unpack .../libstdc++6_14.2.0-7ubuntu1_armhf.deb ... 616s Unpacking libstdc++6:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ... 616s Setting up libstdc++6:armhf (14.2.0-7ubuntu1) ... 616s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 616s Preparing to unpack .../libgcc-s1_14.2.0-7ubuntu1_armhf.deb ... 616s Unpacking libgcc-s1:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ... 616s Setting up libgcc-s1:armhf (14.2.0-7ubuntu1) ... 616s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 616s Preparing to unpack .../install-info_7.1.1-1_armhf.deb ... 616s Unpacking install-info (7.1.1-1) over (7.1-3build2) ... 616s Setting up install-info (7.1.1-1) ... 616s (Reading database ... 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information... 622s The following packages will be REMOVED: 622s libperl5.38t64* perl-modules-5.38* 623s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 623s After this operation, 41.6 MB disk space will be freed. 623s (Reading database ... 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pkgProblemResolver with broken count: 1 744s Starting 2 pkgProblemResolver with broken count: 1 744s Investigating (0) autopkgtest-satdep:armhf < none -> 0 @un puN Ib > 744s Broken autopkgtest-satdep:armhf Depends on r-cran-seurat:armhf < none | 5.1.0-1 @un uH > 744s Considering r-cran-seurat:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 744s Re-Instated zip:armhf 744s Re-Instated unzip:armhf 744s Re-Instated libpaper1:armhf 744s Re-Instated libpaper-utils:armhf 744s Re-Instated xdg-utils:armhf 744s Re-Instated libblas3:armhf 744s Re-Instated libfreetype6:armhf 744s Re-Instated fonts-dejavu-mono:armhf 744s Re-Instated fonts-dejavu-core:armhf 744s Re-Instated fontconfig-config:armhf 744s Re-Instated libfontconfig1:armhf 744s Re-Instated libpixman-1-0:armhf 744s Re-Instated libxcb-render0:armhf 744s Re-Instated libxcb-shm0:armhf 744s Re-Instated libxrender1:armhf 744s Re-Instated libcairo2:armhf 744s Re-Instated libdeflate0:armhf 744s Re-Instated libgomp1:armhf 744s Re-Instated 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r-cran-rtsne:armhf 744s Re-Instated r-cran-scattermore:armhf 744s Re-Instated r-cran-plyr:armhf 744s Re-Instated r-cran-reshape2:armhf 744s Re-Instated r-cran-gridextra:armhf 744s Re-Instated r-cran-rcpparmadillo:armhf 744s Re-Instated r-cran-sctransform:armhf 744s Re-Instated r-cran-spatstat.utils:armhf 744s Re-Instated r-cran-spatstat.data:armhf 744s Re-Instated r-cran-deldir:armhf 744s Re-Instated r-cran-polyclip:armhf 744s Re-Instated r-cran-spatstat.geom:armhf 744s Re-Instated r-cran-spatstat.random:armhf 744s Re-Instated r-cran-abind:armhf 744s Re-Instated r-cran-tensor:armhf 744s Re-Instated r-cran-spatstat.sparse:armhf 744s Re-Instated r-cran-goftest:armhf 744s Re-Instated r-cran-spatstat.explore:armhf 744s Re-Instated r-cran-fnn:armhf 744s Re-Instated r-cran-rcppprogress:armhf 744s Re-Instated libasan8:armhf 744s Re-Instated libubsan1:armhf 744s Re-Instated libgcc-14-dev:armhf 744s Re-Instated libc-dev-bin:armhf 744s Re-Instated linux-libc-dev:armhf 744s Re-Instated libcrypt-dev:armhf 744s Re-Instated rpcsvc-proto:armhf 744s Re-Instated libc6-dev:armhf 744s Re-Instated libstdc++-14-dev:armhf 744s Re-Instated libboost1.83-dev:armhf 744s Re-Instated libboost-dev:armhf 744s Re-Instated r-cran-bh:armhf 744s Re-Instated r-cran-sitmo:armhf 744s Re-Instated r-cran-dqrng:armhf 744s Re-Instated r-cran-uwot:armhf 744s Re-Instated r-cran-seurat:armhf 744s Broken autopkgtest-satdep:armhf Depends on r-cran-ape:armhf < none | 5.8-1 @un uH > 744s Considering r-cran-ape:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 744s Re-Instated r-cran-ape:armhf 744s Broken autopkgtest-satdep:armhf Depends on r-cran-rsvd:armhf < none | 1.0.5-1 @un uH > 744s Considering r-cran-rsvd:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 744s Re-Instated r-cran-rsvd:armhf 744s Broken autopkgtest-satdep:armhf Depends on r-cran-testthat:armhf < none | 3.2.1.1-1 @un uH > 744s Considering r-cran-testthat:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 744s Re-Instated r-cran-brio:armhf 744s Re-Instated r-cran-ps:armhf 744s Re-Instated r-cran-processx:armhf 744s Re-Instated r-cran-callr:armhf 744s Re-Instated r-cran-desc:armhf 744s Re-Instated r-cran-pkgbuild:armhf 744s Re-Instated r-cran-pkgload:armhf 744s Re-Instated r-cran-praise:armhf 744s Re-Instated r-cran-diffobj:armhf 744s Re-Instated r-cran-rematch2:armhf 744s Re-Instated r-cran-waldo:armhf 744s Re-Instated r-cran-testthat:armhf 744s Broken autopkgtest-satdep:armhf Depends on r-bioc-s4vectors:armhf < none | 0.42.1+dfsg-2 @un uH > 744s Considering r-bioc-s4vectors:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 744s Re-Instated r-bioc-biocgenerics:armhf 744s Re-Instated r-bioc-s4vectors:armhf 744s Broken autopkgtest-satdep:armhf Depends on r-bioc-summarizedexperiment:armhf < none | 1.34.0+dfsg-1 @un uH > 744s Considering r-bioc-summarizedexperiment:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 744s Re-Instated r-bioc-matrixgenerics:armhf 744s Reinst Failed early because of r-bioc-genomicranges:armhf 744s Broken autopkgtest-satdep:armhf Depends on r-bioc-deseq2:armhf < none @un H > 744s Broken autopkgtest-satdep:armhf Depends on r-bioc-genomicranges:armhf < none @un H > 744s Broken autopkgtest-satdep:armhf Depends on r-bioc-genomeinfodb:armhf < none | 1.40.1+dfsg-1 @un uH > 744s Considering r-bioc-genomeinfodb:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 744s Reinst Failed early because of r-bioc-iranges:armhf 744s Broken autopkgtest-satdep:armhf Depends on r-bioc-iranges:armhf < none @un H > 744s Broken autopkgtest-satdep:armhf Depends on r-bioc-rtracklayer:armhf < none @un H > 744s Broken autopkgtest-satdep:armhf Depends on r-bioc-biobase:armhf < none | 2.64.0-4 @un uH > 744s Considering r-bioc-biobase:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 744s Re-Instated r-bioc-biobase:armhf 744s Broken autopkgtest-satdep:armhf Depends on r-cran-vgam:armhf < none | 1.1-9-1 @un uH > 744s Considering r-cran-vgam:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 744s Re-Instated r-cran-vgam:armhf 744s Broken autopkgtest-satdep:armhf Depends on r-bioc-limma:armhf < none @un H > 744s Broken autopkgtest-satdep:armhf Depends on r-cran-metap:armhf < none | 1.9-1 @un uH > 744s Considering r-cran-metap:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 744s Re-Instated r-cran-rbibutils:armhf 744s Re-Instated r-cran-rdpack:armhf 744s Re-Instated r-cran-mnormt:armhf 744s Re-Instated r-cran-numderiv:armhf 744s Re-Instated r-cran-sparsem:armhf 744s Re-Instated r-cran-matrixmodels:armhf 744s Re-Instated r-cran-class:armhf 744s Re-Instated r-cran-proxy:armhf 744s Re-Instated r-cran-e1071:armhf 744s Re-Instated r-cran-iterators:armhf 744s Re-Instated r-cran-foreach:armhf 744s Re-Instated r-cran-modelmetrics:armhf 744s Re-Instated r-cran-proc:armhf 744s Re-Instated r-cran-tzdb:armhf 744s Re-Instated r-cran-clock:armhf 744s Re-Instated r-cran-ellipsis:armhf 744s Re-Instated r-cran-gower:armhf 744s Re-Instated r-cran-hardhat:armhf 744s Re-Instated r-cran-rpart:armhf 744s Re-Instated r-cran-nnet:armhf 744s Re-Instated r-cran-shape:armhf 744s Re-Instated r-cran-diagram:armhf 744s Re-Instated r-cran-squarem:armhf 744s Re-Instated r-cran-lava:armhf 744s Re-Instated r-cran-prodlim:armhf 744s Re-Instated r-cran-ipred:armhf 744s Re-Instated r-cran-timechange:armhf 744s Re-Instated r-cran-lubridate:armhf 744s Re-Instated r-cran-timedate:armhf 744s Re-Instated r-cran-recipes:armhf 744s Re-Instated r-cran-caret:armhf 744s Re-Instated r-cran-conquer:armhf 744s Re-Instated r-cran-quantreg:armhf 744s Re-Instated r-cran-sn:armhf 744s Re-Instated r-cran-mvtnorm:armhf 744s Re-Instated r-cran-tfisher:armhf 744s Re-Instated r-cran-plotrix:armhf 744s Reinst Failed early because of r-bioc-multtest:armhf 744s Reinst Failed because of r-cran-mutoss:armhf 744s Considering r-cran-metap:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 744s Broken autopkgtest-satdep:armhf Depends on r-cran-mixtools:armhf < none | 2.0.0-1 @un uH > 744s Considering r-cran-mixtools:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 744s Re-Instated r-cran-kernlab:armhf 744s Re-Instated r-cran-segmented:armhf 744s Re-Instated r-cran-mixtools:armhf 744s Broken autopkgtest-satdep:armhf Depends on r-cran-r.utils:armhf < none | 2.12.3-1 @un uH > 744s Considering r-cran-r.utils:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 744s Re-Instated r-cran-r.methodss3:armhf 744s Re-Instated r-cran-r.oo:armhf 744s Re-Instated r-cran-r.utils:armhf 744s Broken autopkgtest-satdep:armhf Depends on r-bioc-delayedarray:armhf < none @un H > 744s Broken autopkgtest-satdep:armhf Depends on pkg-r-autopkgtest:armhf < none | 20231212ubuntu1 @un uH > 744s Considering pkg-r-autopkgtest:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 744s Re-Instated dctrl-tools:armhf 744s Re-Instated libisl23:armhf 744s Re-Instated libmpc3:armhf 744s Re-Instated cpp-14-arm-linux-gnueabihf:armhf 744s Re-Instated cpp-14:armhf 744s Re-Instated cpp-arm-linux-gnueabihf:armhf 744s Re-Instated cpp:armhf 744s Re-Instated libcc1-0:armhf 744s Re-Instated gcc-14-arm-linux-gnueabihf:armhf 744s Re-Instated gcc-14:armhf 744s Re-Instated gcc-arm-linux-gnueabihf:armhf 744s Re-Instated gcc:armhf 744s Re-Instated g++-14-arm-linux-gnueabihf:armhf 744s Re-Instated g++-14:armhf 744s Re-Instated g++-arm-linux-gnueabihf:armhf 744s Re-Instated g++:armhf 744s Re-Instated build-essential:armhf 744s Re-Instated libgfortran-14-dev:armhf 744s Re-Instated gfortran-14-arm-linux-gnueabihf:armhf 744s Re-Instated gfortran-14:armhf 744s Re-Instated gfortran-arm-linux-gnueabihf:armhf 744s Re-Instated gfortran:armhf 744s Re-Instated libblas-dev:armhf 744s Re-Instated liblapack-dev:armhf 744s Re-Instated libncurses-dev:armhf 744s Re-Instated libreadline-dev:armhf 744s Re-Instated libjpeg-turbo8-dev:armhf 744s Re-Instated libjpeg8-dev:armhf 744s Re-Instated libjpeg-dev:armhf 744s Re-Instated libpcre2-16-0:armhf 744s Re-Instated libpcre2-32-0:armhf 744s Re-Instated libpcre2-posix3:armhf 744s Re-Instated libpcre2-dev:armhf 744s Re-Instated zlib1g-dev:armhf 744s Re-Instated libpng-dev:armhf 744s Re-Instated libbz2-dev:armhf 744s Re-Instated liblzma-dev:armhf 744s Re-Instated icu-devtools:armhf 744s Re-Instated libicu-dev:armhf 744s Re-Instated libpkgconf3:armhf 744s Re-Instated pkgconf-bin:armhf 744s Re-Instated pkgconf:armhf 744s Re-Instated libtirpc-dev:armhf 744s Re-Instated libdeflate-dev:armhf 744s Re-Instated r-base-dev:armhf 744s Re-Instated pkg-r-autopkgtest:armhf 744s Done 744s Some packages could not be installed. This may mean that you have 744s requested an impossible situation or if you are using the unstable 744s distribution that some required packages have not yet been created 744s or been moved out of Incoming. 744s The following information may help to resolve the situation: 744s 744s The following packages have unmet dependencies: 744s autopkgtest-satdep : Depends: r-bioc-summarizedexperiment but it is not going to be installed 744s Depends: r-bioc-deseq2 but it is not installable 744s Depends: r-bioc-genomicranges but it is not installable 744s Depends: r-bioc-genomeinfodb but it is not going to be installed 744s Depends: r-bioc-iranges but it is not installable 744s Depends: r-bioc-rtracklayer but it is not installable 744s Depends: r-bioc-limma but it is not installable 744s Depends: r-cran-metap but it is not going to be installed 744s Depends: r-bioc-delayedarray but it is not installable 744s E: Unable to correct problems, you have held broken packages. 744s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 750s Reading package lists... 751s Building dependency tree... 751s Reading state information... 751s Starting pkgProblemResolver with broken count: 1 751s Starting 2 pkgProblemResolver with broken count: 1 751s Investigating (0) autopkgtest-satdep:armhf < none -> 0 @un puN Ib > 751s Broken autopkgtest-satdep:armhf Depends on r-cran-seurat:armhf < none | 5.1.0-1 @un uH > 751s Considering r-cran-seurat:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 751s Re-Instated zip:armhf 751s Re-Instated unzip:armhf 751s Re-Instated libpaper1:armhf 751s Re-Instated libpaper-utils:armhf 751s Re-Instated xdg-utils:armhf 751s Re-Instated libblas3:armhf 751s Re-Instated libfreetype6:armhf 751s Re-Instated fonts-dejavu-mono:armhf 751s Re-Instated fonts-dejavu-core:armhf 751s Re-Instated fontconfig-config:armhf 751s Re-Instated libfontconfig1:armhf 751s Re-Instated libpixman-1-0:armhf 751s Re-Instated libxcb-render0:armhf 751s Re-Instated libxcb-shm0:armhf 751s Re-Instated libxrender1:armhf 751s Re-Instated libcairo2:armhf 751s Re-Instated libdeflate0:armhf 751s Re-Instated libgomp1:armhf 751s Re-Instated libjpeg-turbo8:armhf 751s Re-Instated libjpeg8:armhf 751s Re-Instated libgfortran5:armhf 751s Re-Instated liblapack3:armhf 751s Re-Instated fontconfig:armhf 751s Re-Instated libgraphite2-3:armhf 751s Re-Instated libharfbuzz0b:armhf 751s Re-Instated libthai-data:armhf 751s Re-Instated libdatrie1:armhf 751s Re-Instated libthai0:armhf 751s Re-Instated libpango-1.0-0:armhf 751s Re-Instated libpangoft2-1.0-0:armhf 751s Re-Instated libpangocairo-1.0-0:armhf 751s Re-Instated libtcl8.6:armhf 751s Re-Instated libjbig0:armhf 751s Re-Instated liblerc4:armhf 751s Re-Instated libsharpyuv0:armhf 751s Re-Instated libwebp7:armhf 751s Re-Instated libtiff6:armhf 751s Re-Instated libxft2:armhf 751s Re-Instated x11-common:armhf 751s Re-Instated libxss1:armhf 751s Re-Instated libtk8.6:armhf 751s Re-Instated libice6:armhf 751s Re-Instated libsm6:armhf 751s Re-Instated libxt6t64:armhf 751s Re-Instated r-base-core:armhf 751s Re-Instated r-cran-lattice:armhf 751s Re-Instated r-cran-sp:armhf 751s Re-Instated r-cran-digest:armhf 751s Re-Instated r-cran-codetools:armhf 751s Re-Instated r-cran-globals:armhf 751s Re-Instated r-cran-listenv:armhf 751s Re-Instated r-cran-parallelly:armhf 751s Re-Instated r-cran-future:armhf 751s Re-Instated r-cran-future.apply:armhf 751s Re-Instated r-cran-matrix:armhf 751s Re-Instated r-cran-progressr:armhf 751s Re-Instated r-cran-littler:armhf 751s Re-Instated littler:armhf 751s Re-Instated r-cran-pkgkitten:armhf 751s Re-Instated r-cran-rcpp:armhf 751s Re-Instated r-cran-rlang:armhf 751s Re-Instated r-cran-dotcall64:armhf 751s Re-Instated r-cran-spam:armhf 751s Re-Instated r-cran-cli:armhf 751s Re-Instated r-cran-glue:armhf 751s Re-Instated r-cran-lifecycle:armhf 751s Re-Instated r-cran-generics:armhf 751s Re-Instated r-cran-rcppeigen:armhf 751s Re-Instated r-cran-seuratobject:armhf 751s Re-Instated r-cran-cluster:armhf 751s Re-Instated r-cran-gtable:armhf 751s Re-Instated r-cran-isoband:armhf 751s Re-Instated r-cran-mass:armhf 751s Re-Instated r-cran-nlme:armhf 751s Re-Instated r-cran-mgcv:armhf 751s Re-Instated r-cran-farver:armhf 751s Re-Instated r-cran-labeling:armhf 751s Re-Instated r-cran-colorspace:armhf 751s Re-Instated r-cran-munsell:armhf 751s Re-Instated r-cran-r6:armhf 751s Re-Instated r-cran-rcolorbrewer:armhf 751s Re-Instated r-cran-viridislite:armhf 751s Re-Instated r-cran-scales:armhf 751s Re-Instated r-cran-fansi:armhf 751s Re-Instated r-cran-magrittr:armhf 751s Re-Instated r-cran-utf8:armhf 751s Re-Instated r-cran-vctrs:armhf 751s Re-Instated r-cran-pillar:armhf 751s Re-Instated r-cran-pkgconfig:armhf 751s Re-Instated r-cran-tibble:armhf 751s Re-Instated r-cran-withr:armhf 751s Re-Instated r-cran-ggplot2:armhf 751s Re-Instated r-cran-cowplot:armhf 751s Re-Instated r-cran-data.table:armhf 751s Re-Instated r-cran-stringi:armhf 751s Re-Instated r-cran-stringr:armhf 751s Re-Instated r-cran-fastdummies:armhf 751s Re-Instated r-cran-survival:armhf 751s Re-Instated r-cran-fitdistrplus:armhf 751s Re-Instated r-cran-ggrepel:armhf 751s Re-Instated r-cran-ggridges:armhf 751s Re-Instated r-cran-curl:armhf 751s Re-Instated r-cran-jsonlite:armhf 751s Re-Instated r-cran-mime:armhf 751s Re-Instated r-cran-sys:armhf 751s Re-Instated r-cran-askpass:armhf 751s Re-Instated r-cran-openssl:armhf 751s Re-Instated r-cran-httr:armhf 751s Re-Instated r-cran-ica:armhf 751s Re-Instated r-cran-cpp11:armhf 751s Re-Instated libsuitesparseconfig7:armhf 751s Re-Instated libamd3:armhf 751s Re-Instated libcolamd3:armhf 751s Re-Instated libltdl7:armhf 751s Re-Instated libglpk40:armhf 751s Re-Instated r-cran-igraph:armhf 751s Re-Instated r-cran-irlba:armhf 751s Re-Instated r-cran-kernsmooth:armhf 751s Re-Instated r-cran-rcpptoml:armhf 751s Re-Instated r-cran-rprojroot:armhf 751s Re-Instated r-cran-here:armhf 751s Re-Instated r-cran-png:armhf 751s Re-Instated r-cran-rappdirs:armhf 751s Re-Instated r-cran-reticulate:armhf 751s Re-Instated r-cran-leiden:armhf 751s Re-Instated r-cran-zoo:armhf 751s Re-Instated r-cran-lmtest:armhf 751s Re-Instated r-cran-matrixstats:armhf 751s Re-Instated r-cran-later:armhf 751s Re-Instated r-cran-fastmap:armhf 751s Re-Instated r-cran-promises:armhf 751s Re-Instated r-cran-httpuv:armhf 751s Re-Instated r-cran-xtable:armhf 751s Re-Instated r-cran-base64enc:armhf 751s Re-Instated r-cran-htmltools:armhf 751s Re-Instated r-cran-fontawesome:armhf 751s Re-Instated r-cran-sourcetools:armhf 751s Re-Instated r-cran-crayon:armhf 751s Re-Instated r-cran-commonmark:armhf 751s Re-Instated r-cran-cachem:armhf 751s Re-Instated libjs-jquery:armhf 751s Re-Instated r-cran-jquerylib:armhf 751s Re-Instated r-cran-memoise:armhf 751s Re-Instated r-cran-fs:armhf 751s Re-Instated r-cran-sass:armhf 751s Re-Instated node-bootstrap-sass:armhf 751s Re-Instated javascript-common:armhf 751s Re-Instated libjs-popper.js:armhf 751s Re-Instated libjs-bootstrap4:armhf 751s Re-Instated r-cran-bslib:armhf 751s Re-Instated fonts-glyphicons-halflings:armhf 751s Re-Instated libjs-bootstrap:armhf 751s Re-Instated libjs-json:armhf 751s Re-Instated libjs-jquery-datatables:armhf 751s Re-Instated libjs-es5-shim:armhf 751s Re-Instated libjs-jquery-ui:armhf 751s Re-Instated libjs-highlight.js:armhf 751s Re-Instated libjs-twitter-bootstrap-datepicker:armhf 751s Re-Instated libjs-sifter.js:armhf 751s Re-Instated libjs-microplugin.js:armhf 751s Re-Instated libjs-jquery-selectize.js:armhf 751s Re-Instated libjs-d3:armhf 751s Re-Instated node-normalize.css:armhf 751s Re-Instated fonts-font-awesome:armhf 751s Re-Instated node-html5shiv:armhf 751s Re-Instated r-cran-shiny:armhf 751s Re-Instated r-cran-miniui:armhf 751s Re-Instated r-cran-patchwork:armhf 751s Re-Instated r-cran-pbapply:armhf 751s Re-Instated r-cran-evaluate:armhf 751s Re-Instated r-cran-xfun:armhf 751s Re-Instated r-cran-highr:armhf 751s Re-Instated r-cran-yaml:armhf 751s Re-Instated fonts-mathjax:armhf 751s Re-Instated libjs-mathjax:armhf 751s Re-Instated r-cran-knitr:armhf 751s Re-Instated r-cran-tinytex:armhf 751s Re-Instated libjs-modernizr:armhf 751s Re-Instated libjs-prettify:armhf 751s Re-Instated pandoc-data:armhf 751s Re-Instated liblua5.4-0:armhf 751s Re-Instated pandoc:armhf 751s Re-Instated r-cran-rmarkdown:armhf 751s Re-Instated r-cran-htmlwidgets:armhf 751s Re-Instated r-cran-tidyselect:armhf 751s Re-Instated r-cran-dplyr:armhf 751s Re-Instated r-cran-purrr:armhf 751s Re-Instated r-cran-tidyr:armhf 751s Re-Instated r-cran-lazyeval:armhf 751s Re-Instated r-cran-crosstalk:armhf 751s Re-Instated r-cran-shinyjs:armhf 751s Re-Instated r-cran-colourpicker:armhf 751s Re-Instated r-cran-plotly:armhf 751s Re-Instated r-cran-rann:armhf 751s Re-Instated r-cran-rcppannoy:armhf 751s Re-Instated r-cran-rcpphnsw:armhf 751s Re-Instated r-cran-gtools:armhf 751s Re-Instated r-cran-bitops:armhf 751s Re-Instated r-cran-catools:armhf 751s Re-Instated r-cran-gdata:armhf 751s Re-Instated r-cran-gplots:armhf 751s Re-Instated r-cran-rocr:armhf 751s Re-Instated r-cran-rspectra:armhf 751s Re-Instated r-cran-rtsne:armhf 751s Re-Instated r-cran-scattermore:armhf 751s Re-Instated r-cran-plyr:armhf 751s Re-Instated r-cran-reshape2:armhf 751s Re-Instated r-cran-gridextra:armhf 751s Re-Instated r-cran-rcpparmadillo:armhf 751s Re-Instated r-cran-sctransform:armhf 751s Re-Instated r-cran-spatstat.utils:armhf 751s Re-Instated r-cran-spatstat.data:armhf 751s Re-Instated r-cran-deldir:armhf 751s Re-Instated r-cran-polyclip:armhf 751s Re-Instated r-cran-spatstat.geom:armhf 751s Re-Instated r-cran-spatstat.random:armhf 751s Re-Instated r-cran-abind:armhf 751s Re-Instated r-cran-tensor:armhf 751s Re-Instated r-cran-spatstat.sparse:armhf 751s Re-Instated r-cran-goftest:armhf 751s Re-Instated r-cran-spatstat.explore:armhf 751s Re-Instated r-cran-fnn:armhf 751s Re-Instated libasan8:armhf 751s Re-Instated libubsan1:armhf 751s Re-Instated libgcc-14-dev:armhf 751s Re-Instated libc-dev-bin:armhf 751s Re-Instated linux-libc-dev:armhf 751s Re-Instated libcrypt1:armhf 751s Re-Instated libcrypt-dev:armhf 751s Re-Instated rpcsvc-proto:armhf 751s Re-Instated libc6-dev:armhf 751s Re-Instated libstdc++-14-dev:armhf 751s Re-Instated libboost1.83-dev:armhf 751s Re-Instated libboost-dev:armhf 751s Re-Instated r-cran-bh:armhf 751s Re-Instated r-cran-sitmo:armhf 751s Re-Instated r-cran-dqrng:armhf 751s Re-Instated r-cran-rcppprogress:armhf 751s Re-Instated r-cran-uwot:armhf 751s Re-Instated r-cran-seurat:armhf 751s Broken autopkgtest-satdep:armhf Depends on r-cran-ape:armhf < none | 5.8-1 @un uH > 751s Considering r-cran-ape:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 751s Re-Instated r-cran-ape:armhf 751s Broken autopkgtest-satdep:armhf Depends on r-cran-rsvd:armhf < none | 1.0.5-1 @un uH > 751s Considering r-cran-rsvd:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 751s Re-Instated r-cran-rsvd:armhf 751s Broken autopkgtest-satdep:armhf Depends on r-cran-testthat:armhf < none | 3.2.1.1-1 @un uH > 751s Considering r-cran-testthat:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 751s Re-Instated r-cran-brio:armhf 751s Re-Instated r-cran-ps:armhf 751s Re-Instated r-cran-processx:armhf 751s Re-Instated r-cran-callr:armhf 751s Re-Instated r-cran-desc:armhf 751s Re-Instated r-cran-pkgbuild:armhf 751s Re-Instated r-cran-pkgload:armhf 751s Re-Instated r-cran-praise:armhf 751s Re-Instated r-cran-diffobj:armhf 751s Re-Instated r-cran-rematch2:armhf 751s Re-Instated r-cran-waldo:armhf 751s Re-Instated r-cran-testthat:armhf 751s Broken autopkgtest-satdep:armhf Depends on r-bioc-s4vectors:armhf < none | 0.42.1+dfsg-2 @un uH > 751s Considering r-bioc-s4vectors:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 751s Re-Instated r-bioc-biocgenerics:armhf 751s Re-Instated r-bioc-s4vectors:armhf 751s Broken autopkgtest-satdep:armhf Depends on r-bioc-summarizedexperiment:armhf < none | 1.34.0+dfsg-1 @un uH > 751s Considering r-bioc-summarizedexperiment:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 751s Re-Instated r-bioc-matrixgenerics:armhf 751s Reinst Failed early because of r-bioc-genomicranges:armhf 751s Broken autopkgtest-satdep:armhf Depends on r-bioc-deseq2:armhf < none @un H > 751s Broken autopkgtest-satdep:armhf Depends on r-bioc-genomicranges:armhf < none @un H > 751s Broken autopkgtest-satdep:armhf Depends on r-bioc-genomeinfodb:armhf < none | 1.40.1+dfsg-1 @un uH > 751s Considering r-bioc-genomeinfodb:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 751s Reinst Failed early because of r-bioc-iranges:armhf 751s Broken autopkgtest-satdep:armhf Depends on r-bioc-iranges:armhf < none @un H > 751s Broken autopkgtest-satdep:armhf Depends on r-bioc-rtracklayer:armhf < none @un H > 751s Broken autopkgtest-satdep:armhf Depends on r-bioc-biobase:armhf < none | 2.64.0-4 @un uH > 751s Considering r-bioc-biobase:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 751s Re-Instated r-bioc-biobase:armhf 751s Broken autopkgtest-satdep:armhf Depends on r-cran-vgam:armhf < none | 1.1-11-1 @un uH > 751s Considering r-cran-vgam:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 751s Re-Instated r-cran-vgam:armhf 751s Broken autopkgtest-satdep:armhf Depends on r-bioc-limma:armhf < none @un H > 751s Broken autopkgtest-satdep:armhf Depends on r-cran-metap:armhf < none | 1.11-1 @un uH > 751s Considering r-cran-metap:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 751s Re-Instated r-cran-rbibutils:armhf 751s Re-Instated r-cran-rdpack:armhf 751s Re-Instated r-cran-mnormt:armhf 751s Re-Instated r-cran-numderiv:armhf 751s Re-Instated r-cran-sparsem:armhf 751s Re-Instated r-cran-matrixmodels:armhf 751s Re-Instated r-cran-class:armhf 751s Re-Instated r-cran-proxy:armhf 751s Re-Instated r-cran-e1071:armhf 751s Re-Instated r-cran-iterators:armhf 751s Re-Instated r-cran-foreach:armhf 751s Re-Instated r-cran-modelmetrics:armhf 751s Re-Instated r-cran-proc:armhf 751s Re-Instated r-cran-tzdb:armhf 751s Re-Instated r-cran-clock:armhf 751s Re-Instated r-cran-gower:armhf 751s Re-Instated r-cran-hardhat:armhf 751s Re-Instated r-cran-rpart:armhf 751s Re-Instated r-cran-nnet:armhf 751s Re-Instated r-cran-shape:armhf 751s Re-Instated r-cran-diagram:armhf 751s Re-Instated r-cran-squarem:armhf 751s Re-Instated r-cran-lava:armhf 751s Re-Instated r-cran-prodlim:armhf 751s Re-Instated r-cran-ipred:armhf 751s Re-Instated r-cran-timechange:armhf 751s Re-Instated r-cran-lubridate:armhf 751s Re-Instated r-cran-timedate:armhf 751s Re-Instated r-cran-recipes:armhf 751s Re-Instated r-cran-caret:armhf 751s Re-Instated r-cran-conquer:armhf 751s Re-Instated r-cran-quantreg:armhf 751s Re-Instated r-cran-sn:armhf 751s Re-Instated r-cran-mvtnorm:armhf 751s Re-Instated r-cran-tfisher:armhf 751s Re-Instated r-cran-plotrix:armhf 751s Reinst Failed early because of r-bioc-multtest:armhf 751s Reinst Failed because of r-cran-mutoss:armhf 751s Considering r-cran-metap:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 751s Broken autopkgtest-satdep:armhf Depends on r-cran-mixtools:armhf < none | 2.0.0-1 @un uH > 751s Considering r-cran-mixtools:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 751s Re-Instated r-cran-kernlab:armhf 751s Re-Instated r-cran-segmented:armhf 751s Re-Instated r-cran-mixtools:armhf 751s Broken autopkgtest-satdep:armhf Depends on r-cran-r.utils:armhf < none | 2.12.3-1 @un uH > 751s Considering r-cran-r.utils:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 751s Re-Instated r-cran-r.methodss3:armhf 751s Re-Instated r-cran-r.oo:armhf 751s Re-Instated r-cran-r.utils:armhf 751s Broken autopkgtest-satdep:armhf Depends on r-bioc-delayedarray:armhf < none @un H > 751s Broken autopkgtest-satdep:armhf Depends on pkg-r-autopkgtest:armhf < none | 20231212ubuntu1 @un uH > 751s Considering pkg-r-autopkgtest:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 751s Re-Instated dctrl-tools:armhf 751s Re-Instated libisl23:armhf 751s Re-Instated libmpc3:armhf 751s Re-Instated cpp-14-arm-linux-gnueabihf:armhf 751s Re-Instated cpp-14:armhf 751s Re-Instated cpp-arm-linux-gnueabihf:armhf 751s Re-Instated cpp:armhf 751s Re-Instated libcc1-0:armhf 751s Re-Instated gcc-14-arm-linux-gnueabihf:armhf 751s Re-Instated gcc-14:armhf 751s Re-Instated gcc-arm-linux-gnueabihf:armhf 751s Re-Instated gcc:armhf 751s Re-Instated g++-14-arm-linux-gnueabihf:armhf 751s Re-Instated g++-14:armhf 751s Re-Instated g++-arm-linux-gnueabihf:armhf 751s Re-Instated g++:armhf 751s Re-Instated build-essential:armhf 751s Re-Instated libgfortran-14-dev:armhf 751s Re-Instated gfortran-14-arm-linux-gnueabihf:armhf 751s Re-Instated gfortran-14:armhf 751s Re-Instated gfortran-arm-linux-gnueabihf:armhf 751s Re-Instated gfortran:armhf 751s Re-Instated libblas-dev:armhf 751s Re-Instated liblapack-dev:armhf 751s Re-Instated libncurses-dev:armhf 751s Re-Instated libreadline-dev:armhf 751s Re-Instated libjpeg-turbo8-dev:armhf 751s Re-Instated libjpeg8-dev:armhf 751s Re-Instated libjpeg-dev:armhf 751s Re-Instated libpcre2-16-0:armhf 751s Re-Instated libpcre2-32-0:armhf 751s Re-Instated libpcre2-posix3:armhf 751s Re-Instated libpcre2-dev:armhf 751s Re-Instated libpng16-16t64:armhf 751s Re-Instated zlib1g-dev:armhf 751s Re-Instated libpng-dev:armhf 751s Re-Instated libbz2-dev:armhf 751s Re-Instated liblzma5:armhf 751s Re-Instated liblzma-dev:armhf 751s Re-Instated icu-devtools:armhf 751s Re-Instated libicu-dev:armhf 751s Re-Instated libpkgconf3:armhf 751s Re-Instated pkgconf-bin:armhf 751s Re-Instated pkgconf:armhf 751s Re-Instated libtirpc-dev:armhf 751s Re-Instated libdeflate-dev:armhf 751s Re-Instated r-base-dev:armhf 751s Re-Instated pkg-r-autopkgtest:armhf 751s Done 751s Some packages could not be installed. This may mean that you have 751s requested an impossible situation or if you are using the unstable 751s distribution that some required packages have not yet been created 751s or been moved out of Incoming. 751s The following information may help to resolve the situation: 751s 751s The following packages have unmet dependencies: 752s autopkgtest-satdep : Depends: r-bioc-summarizedexperiment but it is not going to be installed 752s Depends: r-bioc-deseq2 but it is not installable 752s Depends: r-bioc-genomicranges but it is not installable 752s Depends: r-bioc-genomeinfodb but it is not going to be installed 752s Depends: r-bioc-iranges but it is not installable 752s Depends: r-bioc-rtracklayer but it is not installable 752s Depends: r-bioc-limma but it is not installable 752s Depends: r-cran-metap but it is not going to be installed 752s Depends: r-bioc-delayedarray but it is not installable 752s E: Unable to correct problems, you have held broken packages. 752s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 754s Reading package lists... 754s Building dependency tree... 754s Reading state information... 754s Package r-bioc-deseq2 is not available, but is referred to by another package. 754s This may mean that the package is missing, has been obsoleted, or 754s is only available from another source 754s 754s Package r-bioc-limma is not available, but is referred to by another package. 754s This may mean that the package is missing, has been obsoleted, or 754s is only available from another source 754s 754s Package r-bioc-rtracklayer is not available, but is referred to by another package. 754s This may mean that the package is missing, has been obsoleted, or 754s is only available from another source 754s 754s Package r-bioc-genomicranges is not available, but is referred to by another package. 754s This may mean that the package is missing, has been obsoleted, or 754s is only available from another source 754s 754s Package r-bioc-iranges is not available, but is referred to by another package. 754s This may mean that the package is missing, has been obsoleted, or 754s is only available from another source 754s 754s Package r-bioc-delayedarray is not available, but is referred to by another package. 754s This may mean that the package is missing, has been obsoleted, or 754s is only available from another source 754s 754s E: Package 'r-bioc-deseq2' has no installation candidate 754s E: Package 'r-bioc-genomicranges' has no installation candidate 754s E: Package 'r-bioc-iranges' has no installation candidate 754s E: Package 'r-bioc-rtracklayer' has no installation candidate 754s E: Package 'r-bioc-limma' has no installation candidate 754s E: Package 'r-bioc-delayedarray' has no installation candidate 755s autopkgtest [12:36:12]: @@@@@@@@@@@@@@@@@@@@ summary 755s run-unit-test FAIL badpkg 755s blame: r-cran-seurat 755s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 755s pkg-r-autopkgtest FAIL badpkg 755s blame: r-cran-seurat 755s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 755s pkg-r-autopkgtest FAIL badpkg 755s blame: r-cran-seurat 755s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.