0s autopkgtest [16:29:43]: starting date and time: 2025-03-15 16:29:43+0000 0s autopkgtest [16:29:43]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [16:29:43]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rwfto65e/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-qtl --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.188 lxd-armhf-10.145.243.188:autopkgtest/ubuntu/plucky/armhf 24s autopkgtest [16:30:07]: testbed dpkg architecture: armhf 26s autopkgtest [16:30:09]: testbed apt version: 2.9.33 29s autopkgtest [16:30:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 31s autopkgtest [16:30:14]: testbed release detected to be: None 39s autopkgtest [16:30:22]: updating testbed package index (apt update) 41s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 41s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 42s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 42s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 42s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 42s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 42s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 42s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [114 kB] 42s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1832 B] 42s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 42s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [312 kB] 43s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [11.1 kB] 43s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 43s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 43s Get:15 http://ftpmaster.internal/ubuntu plucky/main Sources [1394 kB] 44s Get:16 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 45s Get:17 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 68s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 69s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 69s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 69s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 85s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 87s Fetched 41.0 MB in 46s (897 kB/s) 88s Reading package lists... 94s autopkgtest [16:31:17]: upgrading testbed (apt dist-upgrade and autopurge) 95s Reading package lists... 96s Building dependency tree... 96s Reading state information... 96s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 96s Starting 2 pkgProblemResolver with broken count: 0 96s Done 97s Entering ResolveByKeep 97s 98s Calculating upgrade... 98s The following packages will be upgraded: 98s libc-bin libc6 locales pinentry-curses python3-jinja2 sos strace 98s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 98s Need to get 8683 kB of archives. 98s After this operation, 23.6 kB of additional disk space will be used. 98s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 102s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 102s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 106s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 107s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 107s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 107s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 108s Preconfiguring packages ... 108s Fetched 8683 kB in 9s (915 kB/s) 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 108s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 109s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 109s Setting up libc6:armhf (2.41-1ubuntu2) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 109s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 109s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 109s Setting up libc-bin (2.41-1ubuntu2) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 110s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 110s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 110s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 110s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 110s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 110s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 110s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 110s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 110s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 110s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 110s Setting up sos (4.9.0-5) ... 111s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 111s Setting up locales (2.41-1ubuntu2) ... 112s Generating locales (this might take a while)... 114s en_US.UTF-8... done 114s Generation complete. 114s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 114s Setting up strace (6.13+ds-1ubuntu1) ... 114s Processing triggers for man-db (2.13.0-1) ... 115s Processing triggers for systemd (257.3-1ubuntu3) ... 118s Reading package lists... 119s Building dependency tree... 119s Reading state information... 120s Starting pkgProblemResolver with broken count: 0 120s Starting 2 pkgProblemResolver with broken count: 0 120s Done 121s Solving dependencies... 122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 124s autopkgtest [16:31:47]: rebooting testbed after setup commands that affected boot 165s autopkgtest [16:32:28]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 190s autopkgtest [16:32:53]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-qtl 204s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-qtl 1.70-1 (dsc) [2088 B] 204s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-qtl 1.70-1 (tar) [4373 kB] 204s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-qtl 1.70-1 (diff) [7308 B] 204s gpgv: Signature made Fri Sep 6 01:43:46 2024 UTC 204s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 204s gpgv: issuer "plessy@debian.org" 204s gpgv: Can't check signature: No public key 204s dpkg-source: warning: cannot verify inline signature for ./r-cran-qtl_1.70-1.dsc: no acceptable signature found 205s autopkgtest [16:33:08]: testing package r-cran-qtl version 1.70-1 207s autopkgtest [16:33:10]: build not needed 211s autopkgtest [16:33:14]: test run-unit-test: preparing testbed 213s Reading package lists... 213s Building dependency tree... 213s Reading state information... 213s Starting pkgProblemResolver with broken count: 0 213s Starting 2 pkgProblemResolver with broken count: 0 213s Done 214s The following NEW packages will be installed: 214s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 214s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgfortran5 214s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 214s libjpeg8 liblapack3 liblerc4 libpango-1.0-0 libpangocairo-1.0-0 214s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libruby libruby3.3 214s libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 214s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 214s r-base-core r-cran-brio r-cran-callr r-cran-cli r-cran-crayon r-cran-desc 214s r-cran-diffobj r-cran-digest r-cran-evaluate r-cran-fs r-cran-glue 214s r-cran-jsonlite r-cran-lifecycle r-cran-magrittr r-cran-pkgbuild 214s r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps r-cran-qtl r-cran-r6 214s r-cran-rlang r-cran-rprojroot r-cran-testthat r-cran-waldo r-cran-withr rake 214s ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert 214s ruby-rubygems ruby-sdbm ruby-test-unit ruby-webrick ruby-xmlrpc ruby3.3 214s rubygems-integration unzip x11-common xdg-utils zip 214s 0 upgraded, 85 newly installed, 0 to remove and 0 not upgraded. 214s Need to get 59.5 MB of archives. 214s After this operation, 133 MB of additional disk space will be used. 214s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 215s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 215s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 216s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-2ubuntu1 [37.5 kB] 216s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-2ubuntu1 [114 kB] 216s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig armhf 2.15.0-2ubuntu1 [190 kB] 217s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.1-2 [132 kB] 217s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 217s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 217s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 217s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 217s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB] 217s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libdatrie1 armhf 0.2.13-3build1 [15.7 kB] 217s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.23-1 [38.5 kB] 217s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 15-20250222-0ubuntu1 [330 kB] 218s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 15-20250222-0ubuntu1 [128 kB] 218s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 218s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.2.0-1 [464 kB] 218s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 218s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libice6 armhf 2:1.1.1-1 [36.5 kB] 218s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 219s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 219s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.1-2 [2091 kB] 221s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 221s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libthai-data all 0.1.29-2build1 [158 kB] 221s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libthai0 armhf 0.1.29-2build1 [15.2 kB] 221s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libpango-1.0-0 armhf 1.56.2-1 [216 kB] 221s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libpangoft2-1.0-0 armhf 1.56.2-1 [43.6 kB] 221s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libpangocairo-1.0-0 armhf 1.56.2-1 [25.1 kB] 221s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libpaper2 armhf 2.2.5-0.3 [16.3 kB] 221s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libpaper-utils armhf 2.2.5-0.3 [14.2 kB] 221s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf rubygems-integration all 1.19 [5550 B] 221s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf ruby3.3 armhf 3.3.6-1.1ubuntu1 [49.0 kB] 222s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf ruby-rubygems all 3.6.3-1 [332 kB] 222s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf ruby armhf 1:3.3~ubuntu3 [3618 B] 222s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf rake all 13.2.1-1 [45.8 kB] 222s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf ruby-did-you-mean all 1.6.3-2 [14.8 kB] 222s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf ruby-minitest all 5.25.4-2ubuntu1 [48.9 kB] 222s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf ruby-net-telnet all 0.2.0-1 [13.3 kB] 222s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf ruby-power-assert all 2.0.3-1 [12.0 kB] 222s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf ruby-test-unit all 3.6.2-1 [67.0 kB] 222s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf ruby-webrick all 1.8.1-1ubuntu1 [52.6 kB] 222s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf ruby-xmlrpc all 0.3.3-2 [24.8 kB] 222s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf ruby-sdbm armhf 1.0.0-5build5 [13.9 kB] 222s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libruby3.3 armhf 3.3.6-1.1ubuntu1 [5572 kB] 228s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libruby armhf 1:3.3~ubuntu3 [5038 B] 229s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 229s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf libsm6 armhf 2:1.2.4-1 [15.1 kB] 229s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libtcl8.6 armhf 8.6.16+dfsg-1 [909 kB] 229s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 229s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 229s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 229s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 229s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 229s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf libtk8.6 armhf 8.6.16-1 [686 kB] 230s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libxt6t64 armhf 1:1.2.1-1.2build1 [145 kB] 230s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf zip armhf 3.0-14ubuntu2 [164 kB] 231s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf unzip armhf 6.0-28ubuntu6 [167 kB] 231s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 231s Get:60 http://ftpmaster.internal/ubuntu plucky/universe armhf r-base-core armhf 4.4.3-1 [28.2 MB] 261s Get:61 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-brio armhf 1.1.5-1 [37.9 kB] 262s Get:62 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-ps armhf 1.9.0-1 [403 kB] 262s Get:63 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-r6 all 2.6.1-1 [101 kB] 262s Get:64 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-processx armhf 3.8.6-1 [359 kB] 263s Get:65 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-callr all 3.7.6-1 [458 kB] 263s Get:66 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-cli armhf 3.6.4-1 [1377 kB] 265s Get:67 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-crayon all 1.5.3-1 [165 kB] 265s Get:68 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-desc all 1.4.3-1 [359 kB] 265s Get:69 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-diffobj armhf 0.3.5-1 [1115 kB] 267s Get:70 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-digest armhf 0.6.37-1 [207 kB] 267s Get:71 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-evaluate all 1.0.3-1 [114 kB] 267s Get:72 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-fs armhf 1.6.5+dfsg-1 [242 kB] 267s Get:73 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-glue armhf 1.8.0-1 [162 kB] 268s Get:74 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-jsonlite armhf 1.9.1+dfsg-1 [440 kB] 268s Get:75 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-rlang armhf 1.1.5-1 [1701 kB] 270s Get:76 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 270s Get:77 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-magrittr armhf 2.0.3-1 [154 kB] 271s Get:78 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-pkgbuild all 1.4.6-1 [213 kB] 271s Get:79 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-rprojroot all 2.0.4-2 [125 kB] 271s Get:80 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-withr all 3.0.2+dfsg-1 [214 kB] 271s Get:81 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-pkgload all 1.4.0-1 [247 kB] 272s Get:82 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-praise all 1.0.0-4build1 [20.3 kB] 272s Get:83 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-qtl armhf 1.70-1 [5571 kB] 278s Get:84 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-waldo all 0.6.1-2 [150 kB] 278s Get:85 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-testthat armhf 3.2.3-1 [1633 kB] 280s Preconfiguring packages ... 281s Fetched 59.5 MB in 1min 6s (905 kB/s) 281s Selecting previously unselected package libfreetype6:armhf. 281s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 281s Preparing to unpack .../00-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 281s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 281s Selecting previously unselected package fonts-dejavu-mono. 281s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 281s Unpacking fonts-dejavu-mono (2.37-8) ... 281s Selecting previously unselected package fonts-dejavu-core. 281s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 281s Unpacking fonts-dejavu-core (2.37-8) ... 281s Selecting previously unselected package fontconfig-config. 281s Preparing to unpack .../03-fontconfig-config_2.15.0-2ubuntu1_armhf.deb ... 281s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 281s Selecting previously unselected package libfontconfig1:armhf. 282s Preparing to unpack .../04-libfontconfig1_2.15.0-2ubuntu1_armhf.deb ... 282s Unpacking libfontconfig1:armhf (2.15.0-2ubuntu1) ... 282s Selecting previously unselected package fontconfig. 282s Preparing to unpack .../05-fontconfig_2.15.0-2ubuntu1_armhf.deb ... 282s Unpacking fontconfig (2.15.0-2ubuntu1) ... 282s Selecting previously unselected package libblas3:armhf. 282s Preparing to unpack .../06-libblas3_3.12.1-2_armhf.deb ... 282s Unpacking libblas3:armhf (3.12.1-2) ... 282s Selecting previously unselected package libpixman-1-0:armhf. 282s Preparing to unpack .../07-libpixman-1-0_0.44.0-3_armhf.deb ... 282s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 282s Selecting previously unselected package libxcb-render0:armhf. 282s Preparing to unpack .../08-libxcb-render0_1.17.0-2_armhf.deb ... 282s Unpacking libxcb-render0:armhf (1.17.0-2) ... 282s Selecting previously unselected package libxcb-shm0:armhf. 282s Preparing to unpack .../09-libxcb-shm0_1.17.0-2_armhf.deb ... 282s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 282s Selecting previously unselected package libxrender1:armhf. 282s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 282s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 282s Selecting previously unselected package libcairo2:armhf. 282s Preparing to unpack .../11-libcairo2_1.18.2-2_armhf.deb ... 282s Unpacking libcairo2:armhf (1.18.2-2) ... 282s Selecting previously unselected package libdatrie1:armhf. 282s Preparing to unpack .../12-libdatrie1_0.2.13-3build1_armhf.deb ... 282s Unpacking libdatrie1:armhf (0.2.13-3build1) ... 282s Selecting previously unselected package libdeflate0:armhf. 282s Preparing to unpack .../13-libdeflate0_1.23-1_armhf.deb ... 282s Unpacking libdeflate0:armhf (1.23-1) ... 282s Selecting previously unselected package libgfortran5:armhf. 282s Preparing to unpack .../14-libgfortran5_15-20250222-0ubuntu1_armhf.deb ... 282s Unpacking libgfortran5:armhf (15-20250222-0ubuntu1) ... 282s Selecting previously unselected package libgomp1:armhf. 282s Preparing to unpack .../15-libgomp1_15-20250222-0ubuntu1_armhf.deb ... 282s Unpacking libgomp1:armhf (15-20250222-0ubuntu1) ... 282s Selecting previously unselected package libgraphite2-3:armhf. 282s Preparing to unpack .../16-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 282s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 282s Selecting previously unselected package libharfbuzz0b:armhf. 282s Preparing to unpack .../17-libharfbuzz0b_10.2.0-1_armhf.deb ... 282s Unpacking libharfbuzz0b:armhf (10.2.0-1) ... 282s Selecting previously unselected package x11-common. 282s Preparing to unpack .../18-x11-common_1%3a7.7+23ubuntu3_all.deb ... 282s Unpacking x11-common (1:7.7+23ubuntu3) ... 282s Selecting previously unselected package libice6:armhf. 282s Preparing to unpack .../19-libice6_2%3a1.1.1-1_armhf.deb ... 282s Unpacking libice6:armhf (2:1.1.1-1) ... 282s Selecting previously unselected package libjpeg-turbo8:armhf. 282s Preparing to unpack .../20-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 282s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 282s Selecting previously unselected package libjpeg8:armhf. 282s Preparing to unpack .../21-libjpeg8_8c-2ubuntu11_armhf.deb ... 282s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 282s Selecting previously unselected package liblapack3:armhf. 282s Preparing to unpack .../22-liblapack3_3.12.1-2_armhf.deb ... 282s Unpacking liblapack3:armhf (3.12.1-2) ... 282s Selecting previously unselected package liblerc4:armhf. 282s Preparing to unpack .../23-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 282s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 282s Selecting previously unselected package libthai-data. 282s Preparing to unpack .../24-libthai-data_0.1.29-2build1_all.deb ... 282s Unpacking libthai-data (0.1.29-2build1) ... 282s Selecting previously unselected package libthai0:armhf. 282s Preparing to unpack .../25-libthai0_0.1.29-2build1_armhf.deb ... 282s Unpacking libthai0:armhf (0.1.29-2build1) ... 282s Selecting previously unselected package libpango-1.0-0:armhf. 282s Preparing to unpack .../26-libpango-1.0-0_1.56.2-1_armhf.deb ... 282s Unpacking libpango-1.0-0:armhf (1.56.2-1) ... 283s Selecting previously unselected package libpangoft2-1.0-0:armhf. 283s Preparing to unpack .../27-libpangoft2-1.0-0_1.56.2-1_armhf.deb ... 283s Unpacking libpangoft2-1.0-0:armhf (1.56.2-1) ... 283s Selecting previously unselected package libpangocairo-1.0-0:armhf. 283s Preparing to unpack .../28-libpangocairo-1.0-0_1.56.2-1_armhf.deb ... 283s Unpacking libpangocairo-1.0-0:armhf (1.56.2-1) ... 283s Selecting previously unselected package libpaper2:armhf. 283s Preparing to unpack .../29-libpaper2_2.2.5-0.3_armhf.deb ... 283s Unpacking libpaper2:armhf (2.2.5-0.3) ... 283s Selecting previously unselected package libpaper-utils. 283s Preparing to unpack .../30-libpaper-utils_2.2.5-0.3_armhf.deb ... 283s Unpacking libpaper-utils (2.2.5-0.3) ... 283s Selecting previously unselected package rubygems-integration. 283s Preparing to unpack .../31-rubygems-integration_1.19_all.deb ... 283s Unpacking rubygems-integration (1.19) ... 283s Selecting previously unselected package ruby3.3. 283s Preparing to unpack .../32-ruby3.3_3.3.6-1.1ubuntu1_armhf.deb ... 283s Unpacking ruby3.3 (3.3.6-1.1ubuntu1) ... 283s Selecting previously unselected package ruby-rubygems. 283s Preparing to unpack .../33-ruby-rubygems_3.6.3-1_all.deb ... 283s Unpacking ruby-rubygems (3.6.3-1) ... 283s Selecting previously unselected package ruby. 283s Preparing to unpack .../34-ruby_1%3a3.3~ubuntu3_armhf.deb ... 283s Unpacking ruby (1:3.3~ubuntu3) ... 283s Selecting previously unselected package rake. 283s Preparing to unpack .../35-rake_13.2.1-1_all.deb ... 283s Unpacking rake (13.2.1-1) ... 283s Selecting previously unselected package ruby-did-you-mean. 283s Preparing to unpack .../36-ruby-did-you-mean_1.6.3-2_all.deb ... 283s Unpacking ruby-did-you-mean (1.6.3-2) ... 283s Selecting previously unselected package ruby-minitest. 283s Preparing to unpack .../37-ruby-minitest_5.25.4-2ubuntu1_all.deb ... 283s Unpacking ruby-minitest (5.25.4-2ubuntu1) ... 283s Selecting previously unselected package ruby-net-telnet. 283s Preparing to unpack .../38-ruby-net-telnet_0.2.0-1_all.deb ... 283s Unpacking ruby-net-telnet (0.2.0-1) ... 283s Selecting previously unselected package ruby-power-assert. 283s Preparing to unpack .../39-ruby-power-assert_2.0.3-1_all.deb ... 283s Unpacking ruby-power-assert (2.0.3-1) ... 283s Selecting previously unselected package ruby-test-unit. 283s Preparing to unpack .../40-ruby-test-unit_3.6.2-1_all.deb ... 283s Unpacking ruby-test-unit (3.6.2-1) ... 283s Selecting previously unselected package ruby-webrick. 283s Preparing to unpack .../41-ruby-webrick_1.8.1-1ubuntu1_all.deb ... 283s Unpacking ruby-webrick (1.8.1-1ubuntu1) ... 283s Selecting previously unselected package ruby-xmlrpc. 283s Preparing to unpack .../42-ruby-xmlrpc_0.3.3-2_all.deb ... 283s Unpacking ruby-xmlrpc (0.3.3-2) ... 283s Selecting previously unselected package ruby-sdbm:armhf. 283s Preparing to unpack .../43-ruby-sdbm_1.0.0-5build5_armhf.deb ... 283s Unpacking ruby-sdbm:armhf (1.0.0-5build5) ... 283s Selecting previously unselected package libruby3.3:armhf. 283s Preparing to unpack .../44-libruby3.3_3.3.6-1.1ubuntu1_armhf.deb ... 283s Unpacking libruby3.3:armhf (3.3.6-1.1ubuntu1) ... 284s Selecting previously unselected package libruby:armhf. 284s Preparing to unpack .../45-libruby_1%3a3.3~ubuntu3_armhf.deb ... 284s Unpacking libruby:armhf (1:3.3~ubuntu3) ... 284s Selecting previously unselected package libsharpyuv0:armhf. 284s Preparing to unpack .../46-libsharpyuv0_1.5.0-0.1_armhf.deb ... 284s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 284s Selecting previously unselected package libsm6:armhf. 284s Preparing to unpack .../47-libsm6_2%3a1.2.4-1_armhf.deb ... 284s Unpacking libsm6:armhf (2:1.2.4-1) ... 284s Selecting previously unselected package libtcl8.6:armhf. 284s Preparing to unpack .../48-libtcl8.6_8.6.16+dfsg-1_armhf.deb ... 284s Unpacking libtcl8.6:armhf (8.6.16+dfsg-1) ... 284s Selecting previously unselected package libjbig0:armhf. 284s Preparing to unpack .../49-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 284s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 284s Selecting previously unselected package libwebp7:armhf. 284s Preparing to unpack .../50-libwebp7_1.5.0-0.1_armhf.deb ... 284s Unpacking libwebp7:armhf (1.5.0-0.1) ... 284s Selecting previously unselected package libtiff6:armhf. 284s Preparing to unpack .../51-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 284s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 284s Selecting previously unselected package libxft2:armhf. 284s Preparing to unpack .../52-libxft2_2.3.6-1build1_armhf.deb ... 284s Unpacking libxft2:armhf (2.3.6-1build1) ... 284s Selecting previously unselected package libxss1:armhf. 284s Preparing to unpack .../53-libxss1_1%3a1.2.3-1build3_armhf.deb ... 284s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 284s Selecting previously unselected package libtk8.6:armhf. 284s Preparing to unpack .../54-libtk8.6_8.6.16-1_armhf.deb ... 284s Unpacking libtk8.6:armhf (8.6.16-1) ... 284s Selecting previously unselected package libxt6t64:armhf. 284s Preparing to unpack .../55-libxt6t64_1%3a1.2.1-1.2build1_armhf.deb ... 284s Unpacking libxt6t64:armhf (1:1.2.1-1.2build1) ... 284s Selecting previously unselected package zip. 284s Preparing to unpack .../56-zip_3.0-14ubuntu2_armhf.deb ... 284s Unpacking zip (3.0-14ubuntu2) ... 284s Selecting previously unselected package unzip. 284s Preparing to unpack .../57-unzip_6.0-28ubuntu6_armhf.deb ... 284s Unpacking unzip (6.0-28ubuntu6) ... 284s Selecting previously unselected package xdg-utils. 285s Preparing to unpack .../58-xdg-utils_1.2.1-2ubuntu1_all.deb ... 285s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 285s Selecting previously unselected package r-base-core. 285s Preparing to unpack .../59-r-base-core_4.4.3-1_armhf.deb ... 285s Unpacking r-base-core (4.4.3-1) ... 285s Selecting previously unselected package r-cran-brio. 285s Preparing to unpack .../60-r-cran-brio_1.1.5-1_armhf.deb ... 285s Unpacking r-cran-brio (1.1.5-1) ... 285s Selecting previously unselected package r-cran-ps. 285s Preparing to unpack .../61-r-cran-ps_1.9.0-1_armhf.deb ... 285s Unpacking r-cran-ps (1.9.0-1) ... 285s Selecting previously unselected package r-cran-r6. 285s Preparing to unpack .../62-r-cran-r6_2.6.1-1_all.deb ... 285s Unpacking r-cran-r6 (2.6.1-1) ... 285s Selecting previously unselected package r-cran-processx. 285s Preparing to unpack .../63-r-cran-processx_3.8.6-1_armhf.deb ... 285s Unpacking r-cran-processx (3.8.6-1) ... 285s Selecting previously unselected package r-cran-callr. 285s Preparing to unpack .../64-r-cran-callr_3.7.6-1_all.deb ... 285s Unpacking r-cran-callr (3.7.6-1) ... 285s Selecting previously unselected package r-cran-cli. 285s Preparing to unpack .../65-r-cran-cli_3.6.4-1_armhf.deb ... 285s Unpacking r-cran-cli (3.6.4-1) ... 285s Selecting previously unselected package r-cran-crayon. 285s Preparing to unpack .../66-r-cran-crayon_1.5.3-1_all.deb ... 285s Unpacking r-cran-crayon (1.5.3-1) ... 285s Selecting previously unselected package r-cran-desc. 285s Preparing to unpack .../67-r-cran-desc_1.4.3-1_all.deb ... 285s Unpacking r-cran-desc (1.4.3-1) ... 285s Selecting previously unselected package r-cran-diffobj. 285s Preparing to unpack .../68-r-cran-diffobj_0.3.5-1_armhf.deb ... 285s Unpacking r-cran-diffobj (0.3.5-1) ... 286s Selecting previously unselected package r-cran-digest. 286s Preparing to unpack .../69-r-cran-digest_0.6.37-1_armhf.deb ... 286s Unpacking r-cran-digest (0.6.37-1) ... 286s Selecting previously unselected package r-cran-evaluate. 286s Preparing to unpack .../70-r-cran-evaluate_1.0.3-1_all.deb ... 286s Unpacking r-cran-evaluate (1.0.3-1) ... 286s Selecting previously unselected package r-cran-fs. 286s Preparing to unpack .../71-r-cran-fs_1.6.5+dfsg-1_armhf.deb ... 286s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 286s Selecting previously unselected package r-cran-glue. 286s Preparing to unpack .../72-r-cran-glue_1.8.0-1_armhf.deb ... 286s Unpacking r-cran-glue (1.8.0-1) ... 286s Selecting previously unselected package r-cran-jsonlite. 286s Preparing to unpack .../73-r-cran-jsonlite_1.9.1+dfsg-1_armhf.deb ... 286s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 286s Selecting previously unselected package r-cran-rlang. 286s Preparing to unpack .../74-r-cran-rlang_1.1.5-1_armhf.deb ... 286s Unpacking r-cran-rlang (1.1.5-1) ... 286s Selecting previously unselected package r-cran-lifecycle. 286s Preparing to unpack .../75-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 286s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 286s Selecting previously unselected package r-cran-magrittr. 286s Preparing to unpack .../76-r-cran-magrittr_2.0.3-1_armhf.deb ... 286s Unpacking r-cran-magrittr (2.0.3-1) ... 286s Selecting previously unselected package r-cran-pkgbuild. 286s Preparing to unpack .../77-r-cran-pkgbuild_1.4.6-1_all.deb ... 286s Unpacking r-cran-pkgbuild (1.4.6-1) ... 286s Selecting previously unselected package r-cran-rprojroot. 286s Preparing to unpack .../78-r-cran-rprojroot_2.0.4-2_all.deb ... 286s Unpacking r-cran-rprojroot (2.0.4-2) ... 286s Selecting previously unselected package r-cran-withr. 286s Preparing to unpack .../79-r-cran-withr_3.0.2+dfsg-1_all.deb ... 286s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 286s Selecting previously unselected package r-cran-pkgload. 287s Preparing to unpack .../80-r-cran-pkgload_1.4.0-1_all.deb ... 287s Unpacking r-cran-pkgload (1.4.0-1) ... 287s Selecting previously unselected package r-cran-praise. 287s Preparing to unpack .../81-r-cran-praise_1.0.0-4build1_all.deb ... 287s Unpacking r-cran-praise (1.0.0-4build1) ... 287s Selecting previously unselected package r-cran-qtl. 287s Preparing to unpack .../82-r-cran-qtl_1.70-1_armhf.deb ... 287s Unpacking r-cran-qtl (1.70-1) ... 287s Selecting previously unselected package r-cran-waldo. 287s Preparing to unpack .../83-r-cran-waldo_0.6.1-2_all.deb ... 287s Unpacking r-cran-waldo (0.6.1-2) ... 287s Selecting previously unselected package r-cran-testthat. 287s Preparing to unpack .../84-r-cran-testthat_3.2.3-1_armhf.deb ... 287s Unpacking r-cran-testthat (3.2.3-1) ... 287s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 287s Setting up libpixman-1-0:armhf (0.44.0-3) ... 287s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 287s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 287s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 287s Setting up libdatrie1:armhf (0.2.13-3build1) ... 287s Setting up ruby-power-assert (2.0.3-1) ... 287s Setting up libxcb-render0:armhf (1.17.0-2) ... 287s Setting up unzip (6.0-28ubuntu6) ... 287s Setting up x11-common (1:7.7+23ubuntu3) ... 287s Setting up libdeflate0:armhf (1.23-1) ... 287s Setting up rubygems-integration (1.19) ... 287s Setting up libxcb-shm0:armhf (1.17.0-2) ... 287s Setting up libgomp1:armhf (15-20250222-0ubuntu1) ... 287s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 287s Setting up ruby-minitest (5.25.4-2ubuntu1) ... 287s Setting up zip (3.0-14ubuntu2) ... 287s Setting up libblas3:armhf (3.12.1-2) ... 287s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 287s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 287s Setting up ruby-test-unit (3.6.2-1) ... 287s Setting up ruby-net-telnet (0.2.0-1) ... 287s Setting up fonts-dejavu-mono (2.37-8) ... 287s Setting up libtcl8.6:armhf (8.6.16+dfsg-1) ... 287s Setting up fonts-dejavu-core (2.37-8) ... 287s Setting up libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 287s Setting up libgfortran5:armhf (15-20250222-0ubuntu1) ... 287s Setting up libwebp7:armhf (1.5.0-0.1) ... 287s Setting up ruby-webrick (1.8.1-1ubuntu1) ... 287s Setting up libharfbuzz0b:armhf (10.2.0-1) ... 287s Setting up libthai-data (0.1.29-2build1) ... 287s Setting up libxss1:armhf (1:1.2.3-1build3) ... 287s Setting up libpaper2:armhf (2.2.5-0.3) ... 288s Setting up ruby-did-you-mean (1.6.3-2) ... 288s Setting up ruby-xmlrpc (0.3.3-2) ... 288s Setting up xdg-utils (1.2.1-2ubuntu1) ... 288s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 288s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 288s Setting up libice6:armhf (2:1.1.1-1) ... 288s Setting up liblapack3:armhf (3.12.1-2) ... 288s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 288s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 288s Setting up libpaper-utils (2.2.5-0.3) ... 288s Setting up libthai0:armhf (0.1.29-2build1) ... 288s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 288s Setting up libfontconfig1:armhf (2.15.0-2ubuntu1) ... 288s Setting up libsm6:armhf (2:1.2.4-1) ... 288s Setting up fontconfig (2.15.0-2ubuntu1) ... 290s Regenerating fonts cache... done. 290s Setting up libxft2:armhf (2.3.6-1build1) ... 290s Setting up libtk8.6:armhf (8.6.16-1) ... 290s Setting up libpango-1.0-0:armhf (1.56.2-1) ... 290s Setting up libcairo2:armhf (1.18.2-2) ... 290s Setting up libxt6t64:armhf (1:1.2.1-1.2build1) ... 290s Setting up libpangoft2-1.0-0:armhf (1.56.2-1) ... 290s Setting up libpangocairo-1.0-0:armhf (1.56.2-1) ... 290s Setting up r-base-core (4.4.3-1) ... 290s Creating config file /etc/R/Renviron with new version 290s Setting up r-cran-crayon (1.5.3-1) ... 290s Setting up r-cran-ps (1.9.0-1) ... 290s Setting up r-cran-r6 (2.6.1-1) ... 290s Setting up r-cran-magrittr (2.0.3-1) ... 290s Setting up r-cran-fs (1.6.5+dfsg-1) ... 290s Setting up r-cran-brio (1.1.5-1) ... 290s Setting up r-cran-diffobj (0.3.5-1) ... 290s Setting up r-cran-rlang (1.1.5-1) ... 290s Setting up r-cran-withr (3.0.2+dfsg-1) ... 290s Setting up r-cran-processx (3.8.6-1) ... 290s Setting up r-cran-praise (1.0.0-4build1) ... 290s Setting up r-cran-digest (0.6.37-1) ... 290s Setting up r-cran-evaluate (1.0.3-1) ... 290s Setting up r-cran-glue (1.8.0-1) ... 290s Setting up r-cran-cli (3.6.4-1) ... 290s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 290s Setting up r-cran-rprojroot (2.0.4-2) ... 290s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 290s Setting up r-cran-waldo (0.6.1-2) ... 290s Setting up r-cran-callr (3.7.6-1) ... 290s Setting up r-cran-desc (1.4.3-1) ... 290s Setting up r-cran-pkgbuild (1.4.6-1) ... 290s Setting up r-cran-pkgload (1.4.0-1) ... 290s Setting up r-cran-testthat (3.2.3-1) ... 290s Setting up libruby:armhf (1:3.3~ubuntu3) ... 290s Setting up ruby-rubygems (3.6.3-1) ... 290s Setting up ruby (1:3.3~ubuntu3) ... 290s Setting up rake (13.2.1-1) ... 290s Setting up ruby-sdbm:armhf (1.0.0-5build5) ... 290s Setting up r-cran-qtl (1.70-1) ... 290s Setting up libruby3.3:armhf (3.3.6-1.1ubuntu1) ... 290s Setting up ruby3.3 (3.3.6-1.1ubuntu1) ... 290s Processing triggers for install-info (7.1.1-1) ... 291s Processing triggers for libc-bin (2.41-1ubuntu2) ... 291s Processing triggers for man-db (2.13.0-1) ... 299s autopkgtest [16:34:42]: test run-unit-test: [----------------------- 301s Warning message: 301s In fixXgeno.f2(cross, alleles) : 301s --Assuming that all individuals are female. 301s 301s Warning message: 301s In fixXgeno.f2(cross, alleles) : 301s --Assuming that all individuals are female. 301s 301s Warning message: 301s In fixXgeno.f2(cross, alleles) : 301s --Assuming that all individuals are female. 301s 301s Warning message: 301s In fixXgeno.f2(cross, alleles) : 301s --Assuming that all individuals are female. 301s 301s Crosses are identical. 301s Test test_io.R passed 304s Crosses are identical. 304s Test test_mapqtl_io.R passed 304s Warning message: 304s In checkcovar(cross, pheno.col, addcovar, intcovar, perm.strata, : 304s Dropping 4 individuals with missing phenotypes. 304s 304s Warning message: 304s In mqmaugment(listeria, minprob = 1, verbose = TRUE) : 304s MQM not yet available for the X chromosome; omitting chr X 305s Warning message: 305s In omit_x_chr(cross) : Omitting X chromosome (X) 307s Warning message: 307s In omit_x_chr(cross) : Omitting X chromosome (X) 307s Test test_qtl.R passed 315s Test test_scanonevar.R passed 315s Crosses are identical. 315s Test test_tidyIO.R passed 317s Warning message: 317s In mqmaugment(cross, ...) : 317s MQM not yet available for the X chromosome; omitting chr X 317s Test testaugmentation.R passed 317s Loading required package: qtl 338s Test testthat.R passed 338s autopkgtest [16:35:21]: test run-unit-test: -----------------------] 342s run-unit-test PASS 342s autopkgtest [16:35:25]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 349s autopkgtest [16:35:32]: test pkg-r-autopkgtest: preparing testbed 354s Reading package lists... 354s Building dependency tree... 354s Reading state information... 354s Starting pkgProblemResolver with broken count: 0 355s Starting 2 pkgProblemResolver with broken count: 0 355s Done 355s The following NEW packages will be installed: 355s build-essential cpp cpp-14 cpp-14-arm-linux-gnueabihf 355s cpp-arm-linux-gnueabihf dctrl-tools g++ g++-14 g++-14-arm-linux-gnueabihf 355s g++-arm-linux-gnueabihf gcc gcc-14 gcc-14-arm-linux-gnueabihf 355s gcc-arm-linux-gnueabihf gfortran gfortran-14 gfortran-14-arm-linux-gnueabihf 355s gfortran-arm-linux-gnueabihf icu-devtools libasan8 libblas-dev libbz2-dev 355s libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdeflate-dev libgcc-14-dev 355s libgfortran-14-dev libicu-dev libisl23 libjpeg-dev libjpeg-turbo8-dev 355s libjpeg8-dev liblapack-dev liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 355s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev 355s libreadline-dev libstdc++-14-dev libtirpc-dev libubsan1 linux-libc-dev 355s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 356s 0 upgraded, 55 newly installed, 0 to remove and 0 not upgraded. 356s Need to get 78.1 MB of archives. 356s After this operation, 243 MB of additional disk space will be used. 356s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-dev-bin armhf 2.41-1ubuntu2 [23.0 kB] 356s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf linux-libc-dev armhf 6.14.0-10.10 [1683 kB] 358s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libcrypt-dev armhf 1:4.4.38-1 [120 kB] 358s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB] 358s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6-dev armhf 2.41-1ubuntu2 [1396 kB] 360s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libisl23 armhf 0.27-1 [546 kB] 361s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libmpc3 armhf 1.3.1-1build2 [47.1 kB] 361s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [9220 kB] 372s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14 armhf 14.2.0-17ubuntu3 [1030 B] 372s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [5578 B] 372s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf cpp armhf 4:14.2.0-1ubuntu1 [22.4 kB] 372s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libcc1-0 armhf 15-20250222-0ubuntu1 [38.9 kB] 372s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libasan8 armhf 15-20250222-0ubuntu1 [2955 kB] 375s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libubsan1 armhf 15-20250222-0ubuntu1 [1191 kB] 376s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-14-dev armhf 14.2.0-17ubuntu3 [897 kB] 377s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [18.0 MB] 400s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14 armhf 14.2.0-17ubuntu3 [506 kB] 401s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [1218 B] 401s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf gcc armhf 4:14.2.0-1ubuntu1 [5004 B] 401s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++-14-dev armhf 14.2.0-17ubuntu3 [2573 kB] 405s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [10.5 MB] 422s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14 armhf 14.2.0-17ubuntu3 [21.8 kB] 422s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf g++-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [966 B] 422s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf g++ armhf 4:14.2.0-1ubuntu1 [1084 B] 422s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf build-essential armhf 12.10ubuntu1 [4928 B] 422s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf dctrl-tools armhf 2.24-3build3 [94.7 kB] 422s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran-14-dev armhf 14.2.0-17ubuntu3 [370 kB] 423s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf gfortran-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [9763 kB] 436s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf gfortran-14 armhf 14.2.0-17ubuntu3 [13.6 kB] 436s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf gfortran-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [1026 B] 436s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf gfortran armhf 4:14.2.0-1ubuntu1 [1166 B] 436s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf icu-devtools armhf 76.1-1ubuntu2 [206 kB] 437s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libblas-dev armhf 3.12.1-2 [141 kB] 437s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libbz2-dev armhf 1.0.8-6 [30.9 kB] 437s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate-dev armhf 1.23-1 [45.0 kB] 437s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libicu-dev armhf 76.1-1ubuntu2 [12.0 MB] 452s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8-dev armhf 2.1.5-3ubuntu2 [265 kB] 452s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8-dev armhf 8c-2ubuntu11 [1484 B] 452s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-dev armhf 8c-2ubuntu11 [1482 B] 452s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack-dev armhf 3.12.1-2 [2207 kB] 454s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libncurses-dev armhf 6.5+20250216-2 [345 kB] 455s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-16-0 armhf 10.45-1 [207 kB] 455s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-32-0 armhf 10.45-1 [197 kB] 455s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-posix3 armhf 10.45-1 [6300 B] 455s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-dev armhf 10.45-1 [752 kB] 456s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libpkgconf3 armhf 1.8.1-4 [26.6 kB] 456s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1ubuntu1 [880 kB] 457s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf libpng-dev armhf 1.6.47-1 [251 kB] 457s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libreadline-dev armhf 8.2-6 [153 kB] 457s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf liblzma-dev armhf 5.6.4-1 [166 kB] 458s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf pkgconf-bin armhf 1.8.1-4 [21.2 kB] 458s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf pkgconf armhf 1.8.1-4 [16.8 kB] 458s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libtirpc-dev armhf 1.3.4+ds-1.3 [184 kB] 458s Get:54 http://ftpmaster.internal/ubuntu plucky/universe armhf r-base-dev all 4.4.3-1 [4176 B] 458s Get:55 http://ftpmaster.internal/ubuntu plucky/universe armhf pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 458s Fetched 78.1 MB in 1min 42s (762 kB/s) 458s Selecting previously unselected package libc-dev-bin. 459s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73257 files and directories currently installed.) 459s Preparing to unpack .../00-libc-dev-bin_2.41-1ubuntu2_armhf.deb ... 459s Unpacking libc-dev-bin (2.41-1ubuntu2) ... 459s Selecting previously unselected package linux-libc-dev:armhf. 459s Preparing to unpack .../01-linux-libc-dev_6.14.0-10.10_armhf.deb ... 459s Unpacking linux-libc-dev:armhf (6.14.0-10.10) ... 459s Selecting previously unselected package libcrypt-dev:armhf. 459s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.38-1_armhf.deb ... 459s Unpacking libcrypt-dev:armhf (1:4.4.38-1) ... 459s Selecting previously unselected package rpcsvc-proto. 459s Preparing to unpack .../03-rpcsvc-proto_1.4.2-0ubuntu7_armhf.deb ... 459s Unpacking rpcsvc-proto (1.4.2-0ubuntu7) ... 459s Selecting previously unselected package libc6-dev:armhf. 459s Preparing to unpack .../04-libc6-dev_2.41-1ubuntu2_armhf.deb ... 459s Unpacking libc6-dev:armhf (2.41-1ubuntu2) ... 459s Selecting previously unselected package libisl23:armhf. 459s Preparing to unpack .../05-libisl23_0.27-1_armhf.deb ... 459s Unpacking libisl23:armhf (0.27-1) ... 459s Selecting previously unselected package libmpc3:armhf. 459s Preparing to unpack .../06-libmpc3_1.3.1-1build2_armhf.deb ... 459s Unpacking libmpc3:armhf (1.3.1-1build2) ... 459s Selecting previously unselected package cpp-14-arm-linux-gnueabihf. 459s Preparing to unpack .../07-cpp-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 459s Unpacking cpp-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 459s Selecting previously unselected package cpp-14. 459s Preparing to unpack .../08-cpp-14_14.2.0-17ubuntu3_armhf.deb ... 459s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 459s Selecting previously unselected package cpp-arm-linux-gnueabihf. 459s Preparing to unpack .../09-cpp-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 459s Unpacking cpp-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 459s Selecting previously unselected package cpp. 459s Preparing to unpack .../10-cpp_4%3a14.2.0-1ubuntu1_armhf.deb ... 459s Unpacking cpp (4:14.2.0-1ubuntu1) ... 459s Selecting previously unselected package libcc1-0:armhf. 459s Preparing to unpack .../11-libcc1-0_15-20250222-0ubuntu1_armhf.deb ... 459s Unpacking libcc1-0:armhf (15-20250222-0ubuntu1) ... 459s Selecting previously unselected package libasan8:armhf. 459s Preparing to unpack .../12-libasan8_15-20250222-0ubuntu1_armhf.deb ... 459s Unpacking libasan8:armhf (15-20250222-0ubuntu1) ... 460s Selecting previously unselected package libubsan1:armhf. 460s Preparing to unpack .../13-libubsan1_15-20250222-0ubuntu1_armhf.deb ... 460s Unpacking libubsan1:armhf (15-20250222-0ubuntu1) ... 460s Selecting previously unselected package libgcc-14-dev:armhf. 460s Preparing to unpack .../14-libgcc-14-dev_14.2.0-17ubuntu3_armhf.deb ... 460s Unpacking libgcc-14-dev:armhf (14.2.0-17ubuntu3) ... 460s Selecting previously unselected package gcc-14-arm-linux-gnueabihf. 460s Preparing to unpack .../15-gcc-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 460s Unpacking gcc-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 460s Selecting previously unselected package gcc-14. 460s Preparing to unpack .../16-gcc-14_14.2.0-17ubuntu3_armhf.deb ... 460s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 460s Selecting previously unselected package gcc-arm-linux-gnueabihf. 460s Preparing to unpack .../17-gcc-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 460s Unpacking gcc-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 460s Selecting previously unselected package gcc. 460s Preparing to unpack .../18-gcc_4%3a14.2.0-1ubuntu1_armhf.deb ... 460s Unpacking gcc (4:14.2.0-1ubuntu1) ... 460s Selecting previously unselected package libstdc++-14-dev:armhf. 460s Preparing to unpack .../19-libstdc++-14-dev_14.2.0-17ubuntu3_armhf.deb ... 460s Unpacking libstdc++-14-dev:armhf (14.2.0-17ubuntu3) ... 461s Selecting previously unselected package g++-14-arm-linux-gnueabihf. 461s Preparing to unpack .../20-g++-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 461s Unpacking g++-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 461s Selecting previously unselected package g++-14. 461s Preparing to unpack .../21-g++-14_14.2.0-17ubuntu3_armhf.deb ... 461s Unpacking g++-14 (14.2.0-17ubuntu3) ... 461s Selecting previously unselected package g++-arm-linux-gnueabihf. 461s Preparing to unpack .../22-g++-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 461s Unpacking g++-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 461s Selecting previously unselected package g++. 461s Preparing to unpack .../23-g++_4%3a14.2.0-1ubuntu1_armhf.deb ... 461s Unpacking g++ (4:14.2.0-1ubuntu1) ... 461s Selecting previously unselected package build-essential. 461s Preparing to unpack .../24-build-essential_12.10ubuntu1_armhf.deb ... 461s Unpacking build-essential (12.10ubuntu1) ... 461s Selecting previously unselected package dctrl-tools. 461s Preparing to unpack .../25-dctrl-tools_2.24-3build3_armhf.deb ... 461s Unpacking dctrl-tools (2.24-3build3) ... 461s Selecting previously unselected package libgfortran-14-dev:armhf. 461s Preparing to unpack .../26-libgfortran-14-dev_14.2.0-17ubuntu3_armhf.deb ... 461s Unpacking libgfortran-14-dev:armhf (14.2.0-17ubuntu3) ... 461s Selecting previously unselected package gfortran-14-arm-linux-gnueabihf. 461s Preparing to unpack .../27-gfortran-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 461s Unpacking gfortran-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 461s Selecting previously unselected package gfortran-14. 461s Preparing to unpack .../28-gfortran-14_14.2.0-17ubuntu3_armhf.deb ... 461s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 461s Selecting previously unselected package gfortran-arm-linux-gnueabihf. 461s Preparing to unpack .../29-gfortran-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 461s Unpacking gfortran-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 461s Selecting previously unselected package gfortran. 461s Preparing to unpack .../30-gfortran_4%3a14.2.0-1ubuntu1_armhf.deb ... 461s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 462s Selecting previously unselected package icu-devtools. 462s Preparing to unpack .../31-icu-devtools_76.1-1ubuntu2_armhf.deb ... 462s Unpacking icu-devtools (76.1-1ubuntu2) ... 462s Selecting previously unselected package libblas-dev:armhf. 462s Preparing to unpack .../32-libblas-dev_3.12.1-2_armhf.deb ... 462s Unpacking libblas-dev:armhf (3.12.1-2) ... 462s Selecting previously unselected package libbz2-dev:armhf. 462s Preparing to unpack .../33-libbz2-dev_1.0.8-6_armhf.deb ... 462s Unpacking libbz2-dev:armhf (1.0.8-6) ... 462s Selecting previously unselected package libdeflate-dev:armhf. 462s Preparing to unpack .../34-libdeflate-dev_1.23-1_armhf.deb ... 462s Unpacking libdeflate-dev:armhf (1.23-1) ... 462s Selecting previously unselected package libicu-dev:armhf. 462s Preparing to unpack .../35-libicu-dev_76.1-1ubuntu2_armhf.deb ... 462s Unpacking libicu-dev:armhf (76.1-1ubuntu2) ... 462s Selecting previously unselected package libjpeg-turbo8-dev:armhf. 462s Preparing to unpack .../36-libjpeg-turbo8-dev_2.1.5-3ubuntu2_armhf.deb ... 462s Unpacking libjpeg-turbo8-dev:armhf (2.1.5-3ubuntu2) ... 462s Selecting previously unselected package libjpeg8-dev:armhf. 462s Preparing to unpack .../37-libjpeg8-dev_8c-2ubuntu11_armhf.deb ... 462s Unpacking libjpeg8-dev:armhf (8c-2ubuntu11) ... 462s Selecting previously unselected package libjpeg-dev:armhf. 462s Preparing to unpack .../38-libjpeg-dev_8c-2ubuntu11_armhf.deb ... 462s Unpacking libjpeg-dev:armhf (8c-2ubuntu11) ... 462s Selecting previously unselected package liblapack-dev:armhf. 462s Preparing to unpack .../39-liblapack-dev_3.12.1-2_armhf.deb ... 462s Unpacking liblapack-dev:armhf (3.12.1-2) ... 462s Selecting previously unselected package libncurses-dev:armhf. 462s Preparing to unpack .../40-libncurses-dev_6.5+20250216-2_armhf.deb ... 462s Unpacking libncurses-dev:armhf (6.5+20250216-2) ... 462s Selecting previously unselected package libpcre2-16-0:armhf. 462s Preparing to unpack .../41-libpcre2-16-0_10.45-1_armhf.deb ... 462s Unpacking libpcre2-16-0:armhf (10.45-1) ... 462s Selecting previously unselected package libpcre2-32-0:armhf. 462s Preparing to unpack .../42-libpcre2-32-0_10.45-1_armhf.deb ... 462s Unpacking libpcre2-32-0:armhf (10.45-1) ... 462s Selecting previously unselected package libpcre2-posix3:armhf. 463s Preparing to unpack .../43-libpcre2-posix3_10.45-1_armhf.deb ... 463s Unpacking libpcre2-posix3:armhf (10.45-1) ... 463s Selecting previously unselected package libpcre2-dev:armhf. 463s Preparing to unpack .../44-libpcre2-dev_10.45-1_armhf.deb ... 463s Unpacking libpcre2-dev:armhf (10.45-1) ... 463s Selecting previously unselected package libpkgconf3:armhf. 463s Preparing to unpack .../45-libpkgconf3_1.8.1-4_armhf.deb ... 463s Unpacking libpkgconf3:armhf (1.8.1-4) ... 463s Selecting previously unselected package zlib1g-dev:armhf. 463s Preparing to unpack .../46-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_armhf.deb ... 463s Unpacking zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 463s Selecting previously unselected package libpng-dev:armhf. 463s Preparing to unpack .../47-libpng-dev_1.6.47-1_armhf.deb ... 463s Unpacking libpng-dev:armhf (1.6.47-1) ... 463s Selecting previously unselected package libreadline-dev:armhf. 463s Preparing to unpack .../48-libreadline-dev_8.2-6_armhf.deb ... 463s Unpacking libreadline-dev:armhf (8.2-6) ... 463s Selecting previously unselected package liblzma-dev:armhf. 463s Preparing to unpack .../49-liblzma-dev_5.6.4-1_armhf.deb ... 463s Unpacking liblzma-dev:armhf (5.6.4-1) ... 463s Selecting previously unselected package pkgconf-bin. 463s Preparing to unpack .../50-pkgconf-bin_1.8.1-4_armhf.deb ... 463s Unpacking pkgconf-bin (1.8.1-4) ... 463s Selecting previously unselected package pkgconf:armhf. 463s Preparing to unpack .../51-pkgconf_1.8.1-4_armhf.deb ... 463s Unpacking pkgconf:armhf (1.8.1-4) ... 463s Selecting previously unselected package libtirpc-dev:armhf. 463s Preparing to unpack .../52-libtirpc-dev_1.3.4+ds-1.3_armhf.deb ... 463s Unpacking libtirpc-dev:armhf (1.3.4+ds-1.3) ... 463s Selecting previously unselected package r-base-dev. 463s Preparing to unpack .../53-r-base-dev_4.4.3-1_all.deb ... 463s Unpacking r-base-dev (4.4.3-1) ... 463s Selecting previously unselected package pkg-r-autopkgtest. 463s Preparing to unpack .../54-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 463s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 463s Setting up linux-libc-dev:armhf (6.14.0-10.10) ... 463s Setting up libpcre2-16-0:armhf (10.45-1) ... 463s Setting up libpcre2-32-0:armhf (10.45-1) ... 463s Setting up libtirpc-dev:armhf (1.3.4+ds-1.3) ... 463s Setting up libpkgconf3:armhf (1.8.1-4) ... 463s Setting up rpcsvc-proto (1.4.2-0ubuntu7) ... 463s Setting up libmpc3:armhf (1.3.1-1build2) ... 463s Setting up icu-devtools (76.1-1ubuntu2) ... 463s Setting up pkgconf-bin (1.8.1-4) ... 463s Setting up liblzma-dev:armhf (5.6.4-1) ... 463s Setting up libubsan1:armhf (15-20250222-0ubuntu1) ... 463s Setting up libpcre2-posix3:armhf (10.45-1) ... 463s Setting up libcrypt-dev:armhf (1:4.4.38-1) ... 463s Setting up libasan8:armhf (15-20250222-0ubuntu1) ... 463s Setting up libgcc-14-dev:armhf (14.2.0-17ubuntu3) ... 463s Setting up libisl23:armhf (0.27-1) ... 463s Setting up libc-dev-bin (2.41-1ubuntu2) ... 463s Setting up libdeflate-dev:armhf (1.23-1) ... 463s Setting up libcc1-0:armhf (15-20250222-0ubuntu1) ... 463s Setting up libblas-dev:armhf (3.12.1-2) ... 463s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode 463s Setting up dctrl-tools (2.24-3build3) ... 463s Setting up cpp-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 463s Setting up libgfortran-14-dev:armhf (14.2.0-17ubuntu3) ... 463s Setting up gcc-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 463s Setting up pkgconf:armhf (1.8.1-4) ... 463s Setting up liblapack-dev:armhf (3.12.1-2) ... 463s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode 463s Setting up cpp-14 (14.2.0-17ubuntu3) ... 463s Setting up libc6-dev:armhf (2.41-1ubuntu2) ... 463s Setting up libstdc++-14-dev:armhf (14.2.0-17ubuntu3) ... 463s Setting up libicu-dev:armhf (76.1-1ubuntu2) ... 463s Setting up cpp-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 463s Setting up gfortran-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 463s Setting up libbz2-dev:armhf (1.0.8-6) ... 463s Setting up gcc-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 463s Setting up g++-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 463s Setting up libjpeg-turbo8-dev:armhf (2.1.5-3ubuntu2) ... 463s Setting up libncurses-dev:armhf (6.5+20250216-2) ... 463s Setting up libpcre2-dev:armhf (10.45-1) ... 463s Setting up libreadline-dev:armhf (8.2-6) ... 463s Setting up gcc-14 (14.2.0-17ubuntu3) ... 463s Setting up gfortran-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 463s Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 463s Setting up cpp (4:14.2.0-1ubuntu1) ... 463s Setting up g++-14 (14.2.0-17ubuntu3) ... 463s Setting up libjpeg8-dev:armhf (8c-2ubuntu11) ... 463s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 463s Setting up g++-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 463s Setting up libpng-dev:armhf (1.6.47-1) ... 463s Setting up libjpeg-dev:armhf (8c-2ubuntu11) ... 463s Setting up gcc (4:14.2.0-1ubuntu1) ... 463s Setting up g++ (4:14.2.0-1ubuntu1) ... 463s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 463s Setting up build-essential (12.10ubuntu1) ... 463s Setting up gfortran (4:14.2.0-1ubuntu1) ... 463s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 463s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 463s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 463s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 463s Setting up r-base-dev (4.4.3-1) ... 463s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 463s Processing triggers for libc-bin (2.41-1ubuntu2) ... 463s Processing triggers for man-db (2.13.0-1) ... 465s Processing triggers for install-info (7.1.1-1) ... 472s autopkgtest [16:37:35]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 472s autopkgtest [16:37:35]: test pkg-r-autopkgtest: [----------------------- 474s Test: Try to load the R library qtl 474s 474s R version 4.4.3 (2025-02-28) -- "Trophy Case" 474s Copyright (C) 2025 The R Foundation for Statistical Computing 474s Platform: arm-unknown-linux-gnueabihf (32-bit) 474s 474s R is free software and comes with ABSOLUTELY NO WARRANTY. 474s You are welcome to redistribute it under certain conditions. 474s Type 'license()' or 'licence()' for distribution details. 474s 474s R is a collaborative project with many contributors. 474s Type 'contributors()' for more information and 474s 'citation()' on how to cite R or R packages in publications. 474s 474s Type 'demo()' for some demos, 'help()' for on-line help, or 474s 'help.start()' for an HTML browser interface to help. 474s Type 'q()' to quit R. 474s 474s > library('qtl') 474s > 474s > 474s Other tests are currently unsupported! 474s They will be progressively added. 475s autopkgtest [16:37:38]: test pkg-r-autopkgtest: -----------------------] 478s pkg-r-autopkgtest PASS 478s autopkgtest [16:37:41]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 482s autopkgtest [16:37:45]: @@@@@@@@@@@@@@@@@@@@ summary 482s run-unit-test PASS 482s pkg-r-autopkgtest PASS