0s autopkgtest [12:34:28]: starting date and time: 2025-03-15 12:34:28+0000 0s autopkgtest [12:34:28]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [12:34:28]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.p8g2dj88/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-gstat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.21 lxd-armhf-10.145.243.21:autopkgtest/ubuntu/plucky/armhf 21s autopkgtest [12:34:49]: testbed dpkg architecture: armhf 23s autopkgtest [12:34:51]: testbed apt version: 2.9.33 27s autopkgtest [12:34:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 29s autopkgtest [12:34:57]: testbed release detected to be: None 37s autopkgtest [12:35:05]: updating testbed package index (apt update) 39s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 39s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 39s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 40s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 40s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [46.2 kB] 40s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [410 kB] 40s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 40s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [80.8 kB] 40s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1860 B] 40s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 40s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [332 kB] 41s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [12.1 kB] 41s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 41s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [332 B] 41s Get:15 http://ftpmaster.internal/ubuntu plucky/main Sources [1388 kB] 42s Get:16 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 67s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1379 kB] 68s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 68s Get:19 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 68s Get:20 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [14.9 MB] 85s Fetched 40.3 MB in 46s (870 kB/s) 87s Reading package lists... 92s autopkgtest [12:36:00]: upgrading testbed (apt dist-upgrade and autopurge) 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 95s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 95s Starting 2 pkgProblemResolver with broken count: 0 95s Done 96s Entering ResolveByKeep 96s 96s Calculating upgrade... 97s The following packages will be upgraded: 97s libc-bin libc6 locales python3-jinja2 strace 97s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Need to get 8277 kB of archives. 97s After this operation, 23.6 kB of additional disk space will be used. 97s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 100s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 101s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 105s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 106s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 107s Preconfiguring packages ... 107s Fetched 8277 kB in 9s (915 kB/s) 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 107s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 107s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 107s Setting up libc6:armhf (2.41-1ubuntu2) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 108s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 108s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 108s Setting up libc-bin (2.41-1ubuntu2) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 108s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 108s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 108s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 108s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 109s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 109s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 109s Setting up locales (2.41-1ubuntu2) ... 110s Generating locales (this might take a while)... 112s en_US.UTF-8... done 112s Generation complete. 112s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 112s Setting up strace (6.13+ds-1ubuntu1) ... 112s Processing triggers for man-db (2.13.0-1) ... 113s Processing triggers for systemd (257.3-1ubuntu3) ... 116s Reading package lists... 117s Building dependency tree... 117s Reading state information... 118s Starting pkgProblemResolver with broken count: 0 118s Starting 2 pkgProblemResolver with broken count: 0 118s Done 119s Solving dependencies... 121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s autopkgtest [12:36:31]: rebooting testbed after setup commands that affected boot 163s autopkgtest [12:37:11]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 188s autopkgtest [12:37:36]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-gstat 201s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-3-1 (dsc) [2317 B] 201s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-3-1 (tar) [2283 kB] 201s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-3-1 (diff) [3748 B] 201s gpgv: Signature made Sun Feb 9 23:46:19 2025 UTC 201s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 201s gpgv: issuer "plessy@debian.org" 201s gpgv: Can't check signature: No public key 201s dpkg-source: warning: cannot verify inline signature for ./r-cran-gstat_2.1-3-1.dsc: no acceptable signature found 201s autopkgtest [12:37:49]: testing package r-cran-gstat version 2.1-3-1 203s autopkgtest [12:37:51]: build not needed 207s autopkgtest [12:37:55]: test run-unit-test: preparing testbed 209s Reading package lists... 209s Building dependency tree... 209s Reading state information... 209s Starting pkgProblemResolver with broken count: 0 209s Starting 2 pkgProblemResolver with broken count: 0 209s Done 210s The following NEW packages will be installed: 210s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gdal-data 210s gdal-plugins libabsl20230802 libaec0 libaom3 libarmadillo14 libarpack2t64 210s libavif16 libblas3 libblosc1 libcairo2 libcfitsio10t64 libdatrie1 libdav1d7 210s libde265-0 libdeflate0 libfontconfig1 libfreetype6 libfreexl1 libfyba0t64 210s libgav1-1 libgdal36 libgeos-c1t64 libgeos3.13.1 libgeotiff5 libgfortran5 210s libgif7 libgomp1 libgpgmepp6t64 libgraphite2-3 libharfbuzz0b libhdf4-0-alt 210s libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec libheif-plugin-libde265 210s libheif1 libice6 libjbig0 libjpeg-turbo8 libjpeg8 libkmlbase1t64 210s libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 210s libminizip1t64 libmysqlclient24 libnetcdf22 libodbc2 libodbcinst2 libogdi4.1 210s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 210s libpaper-utils libpaper2 libpixman-1-0 libpoppler147 libpq5 libproj25 210s libqhull-r8.0 librav1e0.7 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 210s libspatialite8t64 libsvtav1enc2 libsz2 libtcl8.6 libthai-data libthai0 210s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 210s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 210s libxt6t64 libyuv0 littler mysql-common proj-data r-base-core r-cran-abind 210s r-cran-class r-cran-classint r-cran-cli r-cran-codetools r-cran-colorspace 210s r-cran-dbi r-cran-digest r-cran-dotcall64 r-cran-e1071 r-cran-fansi 210s r-cran-farver r-cran-fields r-cran-fnn r-cran-future r-cran-future.apply 210s r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gstat r-cran-gtable 210s r-cran-intervals r-cran-isoband r-cran-kernsmooth r-cran-labeling 210s r-cran-lattice r-cran-lifecycle r-cran-listenv r-cran-littler 210s r-cran-magrittr r-cran-mapdata r-cran-maps r-cran-mass r-cran-matrix 210s r-cran-mgcv r-cran-munsell r-cran-nlme r-cran-parallelly r-cran-pillar 210s r-cran-pkgconfig r-cran-pkgkitten r-cran-proxy r-cran-r6 r-cran-raster 210s r-cran-rcolorbrewer r-cran-rcpp r-cran-rlang r-cran-s2 r-cran-scales 210s r-cran-sf r-cran-sftime r-cran-sp r-cran-spacetime r-cran-spam r-cran-stars 210s r-cran-terra r-cran-tibble r-cran-units r-cran-utf8 r-cran-vctrs 210s r-cran-viridislite r-cran-withr r-cran-wk r-cran-xts r-cran-zoo 210s unixodbc-common unzip x11-common xdg-utils zip 211s 0 upgraded, 168 newly installed, 0 to remove and 0 not upgraded. 211s Need to get 168 MB of archives. 211s After this operation, 323 MB of additional disk space will be used. 211s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 211s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 212s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 213s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-2ubuntu1 [37.5 kB] 213s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-2ubuntu1 [114 kB] 213s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig armhf 2.15.0-2ubuntu1 [190 kB] 213s Get:7 http://ftpmaster.internal/ubuntu plucky/universe armhf gdal-data all 3.10.2+dfsg-1build3 [269 kB] 213s Get:8 http://ftpmaster.internal/ubuntu plucky/universe armhf gdal-plugins armhf 3.10.2+dfsg-1build3 [25.7 kB] 213s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libabsl20230802 armhf 20230802.1-4.2 [472 kB] 214s Get:10 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 214s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libaom3 armhf 3.12.0-1 [1235 kB] 215s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.1-2 [132 kB] 215s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 15-20250222-0ubuntu1 [330 kB] 216s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.1-2 [2091 kB] 218s Get:15 http://ftpmaster.internal/ubuntu plucky/universe armhf libarpack2t64 armhf 3.9.1-4 [86.7 kB] 218s Get:16 http://ftpmaster.internal/ubuntu plucky/universe armhf libarmadillo14 armhf 1:14.2.3+dfsg-1 [102 kB] 218s Get:17 http://ftpmaster.internal/ubuntu plucky/universe armhf libdav1d7 armhf 1.5.1-1 [301 kB] 219s Get:18 http://ftpmaster.internal/ubuntu plucky/universe armhf libgav1-1 armhf 0.19.0-3 [329 kB] 219s Get:19 http://ftpmaster.internal/ubuntu plucky/universe armhf librav1e0.7 armhf 0.7.1-9 [690 kB] 220s Get:20 http://ftpmaster.internal/ubuntu plucky/universe armhf libsvtav1enc2 armhf 2.3.0+dfsg-1 [1080 kB] 221s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 221s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 221s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libyuv0 armhf 0.0.1904.20250204-1 [93.1 kB] 221s Get:24 http://ftpmaster.internal/ubuntu plucky/universe armhf libavif16 armhf 1.2.0-1ubuntu1 [99.7 kB] 221s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libsnappy1v5 armhf 1.2.1-1 [28.4 kB] 221s Get:26 http://ftpmaster.internal/ubuntu plucky/universe armhf libblosc1 armhf 1.21.5+ds-1build1 [23.7 kB] 221s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 221s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 221s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 221s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 221s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB] 222s Get:32 http://ftpmaster.internal/ubuntu plucky/universe armhf libcfitsio10t64 armhf 4.5.0-5 [498 kB] 222s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libdatrie1 armhf 0.2.13-3build1 [15.7 kB] 222s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libde265-0 armhf 1.0.15-1build5 [157 kB] 222s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.23-1 [38.5 kB] 222s Get:36 http://ftpmaster.internal/ubuntu plucky/universe armhf libfyba0t64 armhf 4.1.1-11build1 [109 kB] 222s Get:37 http://ftpmaster.internal/ubuntu plucky/universe armhf libminizip1t64 armhf 1:1.3.dfsg+really1.3.1-1ubuntu1 [20.5 kB] 222s Get:38 http://ftpmaster.internal/ubuntu plucky/universe armhf libfreexl1 armhf 2.0.0-1build2 [37.6 kB] 222s Get:39 http://ftpmaster.internal/ubuntu plucky/universe armhf libgeos3.13.1 armhf 3.13.1-1 [946 kB] 223s Get:40 http://ftpmaster.internal/ubuntu plucky/universe armhf libgeos-c1t64 armhf 3.13.1-1 [96.8 kB] 224s Get:41 http://ftpmaster.internal/ubuntu plucky/universe armhf proj-data all 9.5.1-1 [7924 kB] 232s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 232s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 232s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 232s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 232s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 232s Get:47 http://ftpmaster.internal/ubuntu plucky/universe armhf libproj25 armhf 9.5.1-1 [1331 kB] 234s Get:48 http://ftpmaster.internal/ubuntu plucky/universe armhf libgeotiff5 armhf 1.7.4-1 [52.5 kB] 234s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libgif7 armhf 5.2.2-1ubuntu2 [32.5 kB] 234s Get:50 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 234s Get:51 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf4-0-alt armhf 4.3.0-1 [253 kB] 234s Get:52 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-310 armhf 1.14.5+repack-3 [1410 kB] 236s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libheif-plugin-aomdec armhf 1.19.7-1 [10.9 kB] 236s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libheif-plugin-libde265 armhf 1.19.7-1 [11.7 kB] 236s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf libheif1 armhf 1.19.7-1 [479 kB] 236s Get:56 http://ftpmaster.internal/ubuntu plucky/universe armhf liburiparser1 armhf 0.9.8+dfsg-2 [30.3 kB] 237s Get:57 http://ftpmaster.internal/ubuntu plucky/universe armhf libkmlbase1t64 armhf 1.3.0-12build1 [45.0 kB] 237s Get:58 http://ftpmaster.internal/ubuntu plucky/universe armhf libkmldom1t64 armhf 1.3.0-12build1 [145 kB] 237s Get:59 http://ftpmaster.internal/ubuntu plucky/universe armhf libkmlengine1t64 armhf 1.3.0-12build1 [69.6 kB] 237s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf mysql-common all 5.8+1.1.1ubuntu1 [6922 B] 237s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf libmysqlclient24 armhf 8.4.4-0ubuntu2 [1260 kB] 238s Get:62 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-310 armhf 1.14.5+repack-3 [58.8 kB] 238s Get:63 http://ftpmaster.internal/ubuntu plucky/universe armhf libnetcdf22 armhf 1:4.9.3-1 [459 kB] 238s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf libltdl7 armhf 2.5.4-4 [39.8 kB] 238s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf libodbc2 armhf 2.3.12-2ubuntu1 [145 kB] 239s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf unixodbc-common all 2.3.12-2ubuntu1 [9044 B] 239s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf libodbcinst2 armhf 2.3.12-2ubuntu1 [31.1 kB] 239s Get:68 http://ftpmaster.internal/ubuntu plucky/universe armhf libogdi4.1 armhf 4.1.1+ds-5 [185 kB] 239s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf libopenjp2-7 armhf 2.5.3-2 [172 kB] 239s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf libgpgmepp6t64 armhf 1.24.2-1ubuntu2 [115 kB] 239s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 239s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf libpoppler147 armhf 25.03.0-2 [1033 kB] 240s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libpq5 armhf 17.4-1 [125 kB] 241s Get:74 http://ftpmaster.internal/ubuntu plucky/universe armhf libqhull-r8.0 armhf 2020.2-6build1 [173 kB] 241s Get:75 http://ftpmaster.internal/ubuntu plucky/universe armhf librttopo1 armhf 1.1.0-4 [160 kB] 241s Get:76 http://ftpmaster.internal/ubuntu plucky/universe armhf libspatialite8t64 armhf 5.1.0-3build1 [2019 kB] 243s Get:77 http://ftpmaster.internal/ubuntu plucky/universe armhf libxerces-c3.2t64 armhf 3.2.4+debian-1.3build1 [819 kB] 244s Get:78 http://ftpmaster.internal/ubuntu plucky/universe armhf libgdal36 armhf 3.10.2+dfsg-1build3 [8582 kB] 253s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 15-20250222-0ubuntu1 [128 kB] 253s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 253s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.2.0-1 [464 kB] 254s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 254s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf libice6 armhf 2:1.1.1-1 [36.5 kB] 254s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf libthai-data all 0.1.29-2build1 [158 kB] 254s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf libthai0 armhf 0.1.29-2build1 [15.2 kB] 254s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf libpango-1.0-0 armhf 1.56.1-1 [216 kB] 254s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf libpangoft2-1.0-0 armhf 1.56.1-1 [43.5 kB] 254s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf libpangocairo-1.0-0 armhf 1.56.1-1 [25.1 kB] 254s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf libpaper2 armhf 2.2.5-0.3 [16.3 kB] 254s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf libpaper-utils armhf 2.2.5-0.3 [14.2 kB] 254s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf libsm6 armhf 2:1.2.4-1 [15.1 kB] 254s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf libtcl8.6 armhf 8.6.16+dfsg-1 [909 kB] 255s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 255s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 255s Get:95 http://ftpmaster.internal/ubuntu plucky/main armhf libtk8.6 armhf 8.6.16-1 [686 kB] 256s Get:96 http://ftpmaster.internal/ubuntu plucky/universe armhf libudunits2-data all 2.2.28-7build1 [19.4 kB] 256s Get:97 http://ftpmaster.internal/ubuntu plucky/universe armhf libudunits2-0 armhf 2.2.28-7build1 [47.1 kB] 256s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf libxt6t64 armhf 1:1.2.1-1.2build1 [145 kB] 256s Get:99 http://ftpmaster.internal/ubuntu plucky/main armhf zip armhf 3.0-14ubuntu2 [164 kB] 257s Get:100 http://ftpmaster.internal/ubuntu plucky/main armhf unzip armhf 6.0-28ubuntu6 [167 kB] 257s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 257s Get:102 http://ftpmaster.internal/ubuntu plucky/universe armhf r-base-core armhf 4.4.3-1 [28.2 MB] 288s Get:103 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-littler armhf 0.3.20-2 [90.9 kB] 288s Get:104 http://ftpmaster.internal/ubuntu plucky/universe armhf littler all 0.3.20-2 [2554 B] 288s Get:105 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-abind all 1.4-8-1 [66.9 kB] 288s Get:106 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-mass armhf 7.3-64-1 [1105 kB] 290s Get:107 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-class armhf 7.3-23-1 [88.8 kB] 290s Get:108 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-proxy armhf 0.4-27-1 [180 kB] 290s Get:109 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-e1071 armhf 1.7-16-1 [557 kB] 290s Get:110 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-kernsmooth armhf 2.23-26-1 [91.6 kB] 291s Get:111 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-classint armhf 0.4-11+dfsg-1 [108 kB] 291s Get:112 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-cli armhf 3.6.4-1 [1377 kB] 292s Get:113 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-codetools all 0.2-20-1 [90.5 kB] 292s Get:114 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-colorspace armhf 2.1-1+dfsg-1 [1561 kB] 294s Get:115 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-dbi all 1.2.3-1 [853 kB] 295s Get:116 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-digest armhf 0.6.37-1 [207 kB] 296s Get:117 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-dotcall64 armhf 1.2-1 [36.5 kB] 296s Get:118 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-fansi armhf 1.0.5-1 [611 kB] 296s Get:119 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-farver armhf 2.1.2-1 [1355 kB] 298s Get:120 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 298s Get:121 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-rcpp armhf 1.0.14-1 [1976 kB] 300s Get:122 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-spam armhf 2.11-1-1 [2730 kB] 304s Get:123 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-viridislite all 0.4.2-2 [1088 kB] 305s Get:124 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-maps armhf 3.4.2.1-1 [2348 kB] 308s Get:125 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-fields armhf 16.3.1-1 [3760 kB] 312s Get:126 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-fnn armhf 1.1.4.1-1 [119 kB] 312s Get:127 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-globals all 0.16.3-1 [120 kB] 312s Get:128 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 313s Get:129 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-parallelly armhf 1.42.0-1 [540 kB] 313s Get:130 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-future all 1.34.0+dfsg-1 [646 kB] 314s Get:131 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-future.apply all 1.11.3+dfsg-1 [175 kB] 314s Get:132 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-glue armhf 1.8.0-1 [162 kB] 314s Get:133 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-rlang armhf 1.1.5-1 [1701 kB] 317s Get:134 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 317s Get:135 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 317s Get:136 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-isoband armhf 0.2.7-1 [1477 kB] 319s Get:137 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-lattice armhf 0.22-6-1 [1363 kB] 320s Get:138 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-nlme armhf 3.1.167-1 [2306 kB] 323s Get:139 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-matrix armhf 1.7-3-1 [4039 kB] 328s Get:140 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-mgcv armhf 1.9-1-1 [3205 kB] 331s Get:141 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-labeling all 0.4.3-1 [62.1 kB] 331s Get:142 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-munsell all 0.5.1-1 [213 kB] 332s Get:143 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-r6 all 2.6.1-1 [101 kB] 332s Get:144 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 332s Get:145 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-scales all 1.3.0-1 [603 kB] 332s Get:146 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-magrittr armhf 2.0.3-1 [154 kB] 333s Get:147 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-utf8 armhf 1.2.4-1 [136 kB] 333s Get:148 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-vctrs armhf 0.6.5-1 [1310 kB] 335s Get:149 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 335s Get:150 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 335s Get:151 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-tibble armhf 3.2.1+dfsg-3 [420 kB] 336s Get:152 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-withr all 3.0.2+dfsg-1 [214 kB] 337s Get:153 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 341s Get:154 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-sp armhf 1:2.2-0+dfsg-1 [1441 kB] 342s Get:155 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-zoo armhf 1.8-13-1 [996 kB] 344s Get:156 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-wk armhf 0.9.4-1 [1785 kB] 346s Get:157 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-s2 armhf 1.1.7-1 [1927 kB] 349s Get:158 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-units armhf 0.8-5+dfsg-1 [270 kB] 349s Get:159 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-sf armhf 1.0-19+dfsg-1 [3266 kB] 353s Get:160 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-sftime all 0.2-0-6 [168 kB] 354s Get:161 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-xts armhf 0.14.1-1 [1181 kB] 355s Get:162 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-intervals armhf 0.15.5-1 [600 kB] 356s Get:163 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-spacetime all 1.3-3-1 [2780 kB] 359s Get:164 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-stars all 0.6-8-1 [4414 kB] 365s Get:165 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-gstat armhf 2.1-3-1 [2322 kB] 368s Get:166 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-mapdata armhf 2.3.1-1 [23.5 MB] 396s Get:167 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-terra armhf 1.8-29-1 [4053 kB] 401s Get:168 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-raster armhf 3.6-31-1 [3144 kB] 405s Preconfiguring packages ... 405s Fetched 168 MB in 3min 14s (866 kB/s) 405s Selecting previously unselected package libfreetype6:armhf. 405s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 405s Preparing to unpack .../000-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 405s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 405s Selecting previously unselected package fonts-dejavu-mono. 405s Preparing to unpack .../001-fonts-dejavu-mono_2.37-8_all.deb ... 405s Unpacking fonts-dejavu-mono (2.37-8) ... 405s Selecting previously unselected package fonts-dejavu-core. 405s Preparing to unpack .../002-fonts-dejavu-core_2.37-8_all.deb ... 405s Unpacking fonts-dejavu-core (2.37-8) ... 405s Selecting previously unselected package fontconfig-config. 405s Preparing to unpack .../003-fontconfig-config_2.15.0-2ubuntu1_armhf.deb ... 405s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 406s Selecting previously unselected package libfontconfig1:armhf. 406s Preparing to unpack .../004-libfontconfig1_2.15.0-2ubuntu1_armhf.deb ... 406s Unpacking libfontconfig1:armhf (2.15.0-2ubuntu1) ... 406s Selecting previously unselected package fontconfig. 406s Preparing to unpack .../005-fontconfig_2.15.0-2ubuntu1_armhf.deb ... 406s Unpacking fontconfig (2.15.0-2ubuntu1) ... 406s Selecting previously unselected package gdal-data. 406s Preparing to unpack .../006-gdal-data_3.10.2+dfsg-1build3_all.deb ... 406s Unpacking gdal-data (3.10.2+dfsg-1build3) ... 406s Selecting previously unselected package gdal-plugins:armhf. 406s Preparing to unpack .../007-gdal-plugins_3.10.2+dfsg-1build3_armhf.deb ... 406s Unpacking gdal-plugins:armhf (3.10.2+dfsg-1build3) ... 406s Selecting previously unselected package libabsl20230802:armhf. 406s Preparing to unpack .../008-libabsl20230802_20230802.1-4.2_armhf.deb ... 406s Unpacking libabsl20230802:armhf (20230802.1-4.2) ... 406s Selecting previously unselected package libaec0:armhf. 406s Preparing to unpack .../009-libaec0_1.1.3-1_armhf.deb ... 406s Unpacking libaec0:armhf (1.1.3-1) ... 406s Selecting previously unselected package libaom3:armhf. 406s Preparing to unpack .../010-libaom3_3.12.0-1_armhf.deb ... 406s Unpacking libaom3:armhf (3.12.0-1) ... 406s Selecting previously unselected package libblas3:armhf. 406s Preparing to unpack .../011-libblas3_3.12.1-2_armhf.deb ... 406s Unpacking libblas3:armhf (3.12.1-2) ... 406s Selecting previously unselected package libgfortran5:armhf. 406s Preparing to unpack .../012-libgfortran5_15-20250222-0ubuntu1_armhf.deb ... 406s Unpacking libgfortran5:armhf (15-20250222-0ubuntu1) ... 406s Selecting previously unselected package liblapack3:armhf. 406s Preparing to unpack .../013-liblapack3_3.12.1-2_armhf.deb ... 406s Unpacking liblapack3:armhf (3.12.1-2) ... 406s Selecting previously unselected package libarpack2t64:armhf. 406s Preparing to unpack .../014-libarpack2t64_3.9.1-4_armhf.deb ... 406s Unpacking libarpack2t64:armhf (3.9.1-4) ... 406s Selecting previously unselected package libarmadillo14. 406s Preparing to unpack .../015-libarmadillo14_1%3a14.2.3+dfsg-1_armhf.deb ... 406s Unpacking libarmadillo14 (1:14.2.3+dfsg-1) ... 406s Selecting previously unselected package libdav1d7:armhf. 406s Preparing to unpack .../016-libdav1d7_1.5.1-1_armhf.deb ... 406s Unpacking libdav1d7:armhf (1.5.1-1) ... 406s Selecting previously unselected package libgav1-1:armhf. 406s Preparing to unpack .../017-libgav1-1_0.19.0-3_armhf.deb ... 406s Unpacking libgav1-1:armhf (0.19.0-3) ... 406s Selecting previously unselected package librav1e0.7:armhf. 406s Preparing to unpack .../018-librav1e0.7_0.7.1-9_armhf.deb ... 406s Unpacking librav1e0.7:armhf (0.7.1-9) ... 406s Selecting previously unselected package libsvtav1enc2:armhf. 406s Preparing to unpack .../019-libsvtav1enc2_2.3.0+dfsg-1_armhf.deb ... 406s Unpacking libsvtav1enc2:armhf (2.3.0+dfsg-1) ... 406s Selecting previously unselected package libjpeg-turbo8:armhf. 406s Preparing to unpack .../020-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 406s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 406s Selecting previously unselected package libjpeg8:armhf. 406s Preparing to unpack .../021-libjpeg8_8c-2ubuntu11_armhf.deb ... 406s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 406s Selecting previously unselected package libyuv0:armhf. 406s Preparing to unpack .../022-libyuv0_0.0.1904.20250204-1_armhf.deb ... 406s Unpacking libyuv0:armhf (0.0.1904.20250204-1) ... 406s Selecting previously unselected package libavif16:armhf. 406s Preparing to unpack .../023-libavif16_1.2.0-1ubuntu1_armhf.deb ... 406s Unpacking libavif16:armhf (1.2.0-1ubuntu1) ... 406s Selecting previously unselected package libsnappy1v5:armhf. 406s Preparing to unpack .../024-libsnappy1v5_1.2.1-1_armhf.deb ... 406s Unpacking libsnappy1v5:armhf (1.2.1-1) ... 406s Selecting previously unselected package libblosc1:armhf. 407s Preparing to unpack .../025-libblosc1_1.21.5+ds-1build1_armhf.deb ... 407s Unpacking libblosc1:armhf (1.21.5+ds-1build1) ... 407s Selecting previously unselected package libpixman-1-0:armhf. 407s Preparing to unpack .../026-libpixman-1-0_0.44.0-3_armhf.deb ... 407s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 407s Selecting previously unselected package libxcb-render0:armhf. 407s Preparing to unpack .../027-libxcb-render0_1.17.0-2_armhf.deb ... 407s Unpacking libxcb-render0:armhf (1.17.0-2) ... 407s Selecting previously unselected package libxcb-shm0:armhf. 407s Preparing to unpack .../028-libxcb-shm0_1.17.0-2_armhf.deb ... 407s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 407s Selecting previously unselected package libxrender1:armhf. 407s Preparing to unpack .../029-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 407s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 407s Selecting previously unselected package libcairo2:armhf. 407s Preparing to unpack .../030-libcairo2_1.18.2-2_armhf.deb ... 407s Unpacking libcairo2:armhf (1.18.2-2) ... 407s Selecting previously unselected package libcfitsio10t64:armhf. 407s Preparing to unpack .../031-libcfitsio10t64_4.5.0-5_armhf.deb ... 407s Unpacking libcfitsio10t64:armhf (4.5.0-5) ... 407s Selecting previously unselected package libdatrie1:armhf. 407s Preparing to unpack .../032-libdatrie1_0.2.13-3build1_armhf.deb ... 407s Unpacking libdatrie1:armhf (0.2.13-3build1) ... 407s Selecting previously unselected package libde265-0:armhf. 407s Preparing to unpack .../033-libde265-0_1.0.15-1build5_armhf.deb ... 407s Unpacking libde265-0:armhf (1.0.15-1build5) ... 407s Selecting previously unselected package libdeflate0:armhf. 407s Preparing to unpack .../034-libdeflate0_1.23-1_armhf.deb ... 407s Unpacking libdeflate0:armhf (1.23-1) ... 407s Selecting previously unselected package libfyba0t64:armhf. 407s Preparing to unpack .../035-libfyba0t64_4.1.1-11build1_armhf.deb ... 407s Unpacking libfyba0t64:armhf (4.1.1-11build1) ... 407s Selecting previously unselected package libminizip1t64:armhf. 407s Preparing to unpack .../036-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu1_armhf.deb ... 407s Unpacking libminizip1t64:armhf (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 407s Selecting previously unselected package libfreexl1:armhf. 407s Preparing to unpack .../037-libfreexl1_2.0.0-1build2_armhf.deb ... 407s Unpacking libfreexl1:armhf (2.0.0-1build2) ... 407s Selecting previously unselected package libgeos3.13.1:armhf. 407s Preparing to unpack .../038-libgeos3.13.1_3.13.1-1_armhf.deb ... 407s Unpacking libgeos3.13.1:armhf (3.13.1-1) ... 407s Selecting previously unselected package libgeos-c1t64:armhf. 407s Preparing to unpack .../039-libgeos-c1t64_3.13.1-1_armhf.deb ... 407s Unpacking libgeos-c1t64:armhf (3.13.1-1) ... 407s Selecting previously unselected package proj-data. 407s Preparing to unpack .../040-proj-data_9.5.1-1_all.deb ... 407s Unpacking proj-data (9.5.1-1) ... 407s Selecting previously unselected package libjbig0:armhf. 407s Preparing to unpack .../041-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 407s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 407s Selecting previously unselected package liblerc4:armhf. 407s Preparing to unpack .../042-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 407s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 407s Selecting previously unselected package libsharpyuv0:armhf. 407s Preparing to unpack .../043-libsharpyuv0_1.5.0-0.1_armhf.deb ... 408s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 408s Selecting previously unselected package libwebp7:armhf. 408s Preparing to unpack .../044-libwebp7_1.5.0-0.1_armhf.deb ... 408s Unpacking libwebp7:armhf (1.5.0-0.1) ... 408s Selecting previously unselected package libtiff6:armhf. 408s Preparing to unpack .../045-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 408s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 408s Selecting previously unselected package libproj25:armhf. 408s Preparing to unpack .../046-libproj25_9.5.1-1_armhf.deb ... 408s Unpacking libproj25:armhf (9.5.1-1) ... 408s Selecting previously unselected package libgeotiff5:armhf. 408s Preparing to unpack .../047-libgeotiff5_1.7.4-1_armhf.deb ... 408s Unpacking libgeotiff5:armhf (1.7.4-1) ... 408s Selecting previously unselected package libgif7:armhf. 408s Preparing to unpack .../048-libgif7_5.2.2-1ubuntu2_armhf.deb ... 408s Unpacking libgif7:armhf (5.2.2-1ubuntu2) ... 408s Selecting previously unselected package libsz2:armhf. 408s Preparing to unpack .../049-libsz2_1.1.3-1_armhf.deb ... 408s Unpacking libsz2:armhf (1.1.3-1) ... 408s Selecting previously unselected package libhdf4-0-alt:armhf. 408s Preparing to unpack .../050-libhdf4-0-alt_4.3.0-1_armhf.deb ... 408s Unpacking libhdf4-0-alt:armhf (4.3.0-1) ... 408s Selecting previously unselected package libhdf5-310:armhf. 408s Preparing to unpack .../051-libhdf5-310_1.14.5+repack-3_armhf.deb ... 408s Unpacking libhdf5-310:armhf (1.14.5+repack-3) ... 408s Selecting previously unselected package libheif-plugin-aomdec:armhf. 408s Preparing to unpack .../052-libheif-plugin-aomdec_1.19.7-1_armhf.deb ... 408s Unpacking libheif-plugin-aomdec:armhf (1.19.7-1) ... 408s Selecting previously unselected package libheif-plugin-libde265:armhf. 408s Preparing to unpack .../053-libheif-plugin-libde265_1.19.7-1_armhf.deb ... 408s Unpacking libheif-plugin-libde265:armhf (1.19.7-1) ... 408s Selecting previously unselected package libheif1:armhf. 408s Preparing to unpack .../054-libheif1_1.19.7-1_armhf.deb ... 408s Unpacking libheif1:armhf (1.19.7-1) ... 408s Selecting previously unselected package liburiparser1:armhf. 408s Preparing to unpack .../055-liburiparser1_0.9.8+dfsg-2_armhf.deb ... 408s Unpacking liburiparser1:armhf (0.9.8+dfsg-2) ... 408s Selecting previously unselected package libkmlbase1t64:armhf. 408s Preparing to unpack .../056-libkmlbase1t64_1.3.0-12build1_armhf.deb ... 408s Unpacking libkmlbase1t64:armhf (1.3.0-12build1) ... 408s Selecting previously unselected package libkmldom1t64:armhf. 408s Preparing to unpack .../057-libkmldom1t64_1.3.0-12build1_armhf.deb ... 408s Unpacking libkmldom1t64:armhf (1.3.0-12build1) ... 408s Selecting previously unselected package libkmlengine1t64:armhf. 408s Preparing to unpack .../058-libkmlengine1t64_1.3.0-12build1_armhf.deb ... 408s Unpacking libkmlengine1t64:armhf (1.3.0-12build1) ... 408s Selecting previously unselected package mysql-common. 408s Preparing to unpack .../059-mysql-common_5.8+1.1.1ubuntu1_all.deb ... 408s Unpacking mysql-common (5.8+1.1.1ubuntu1) ... 408s Selecting previously unselected package libmysqlclient24:armhf. 408s Preparing to unpack .../060-libmysqlclient24_8.4.4-0ubuntu2_armhf.deb ... 408s Unpacking libmysqlclient24:armhf (8.4.4-0ubuntu2) ... 408s Selecting previously unselected package libhdf5-hl-310:armhf. 408s Preparing to unpack .../061-libhdf5-hl-310_1.14.5+repack-3_armhf.deb ... 408s Unpacking libhdf5-hl-310:armhf (1.14.5+repack-3) ... 408s Selecting previously unselected package libnetcdf22:armhf. 408s Preparing to unpack .../062-libnetcdf22_1%3a4.9.3-1_armhf.deb ... 408s Unpacking libnetcdf22:armhf (1:4.9.3-1) ... 408s Selecting previously unselected package libltdl7:armhf. 408s Preparing to unpack .../063-libltdl7_2.5.4-4_armhf.deb ... 408s Unpacking libltdl7:armhf (2.5.4-4) ... 408s Selecting previously unselected package libodbc2:armhf. 408s Preparing to unpack .../064-libodbc2_2.3.12-2ubuntu1_armhf.deb ... 408s Unpacking libodbc2:armhf (2.3.12-2ubuntu1) ... 408s Selecting previously unselected package unixodbc-common. 408s Preparing to unpack .../065-unixodbc-common_2.3.12-2ubuntu1_all.deb ... 408s Unpacking unixodbc-common (2.3.12-2ubuntu1) ... 408s Selecting previously unselected package libodbcinst2:armhf. 408s Preparing to unpack .../066-libodbcinst2_2.3.12-2ubuntu1_armhf.deb ... 408s Unpacking libodbcinst2:armhf (2.3.12-2ubuntu1) ... 408s Selecting previously unselected package libogdi4.1:armhf. 409s Preparing to unpack .../067-libogdi4.1_4.1.1+ds-5_armhf.deb ... 409s Unpacking libogdi4.1:armhf (4.1.1+ds-5) ... 409s Selecting previously unselected package libopenjp2-7:armhf. 409s Preparing to unpack .../068-libopenjp2-7_2.5.3-2_armhf.deb ... 409s Unpacking libopenjp2-7:armhf (2.5.3-2) ... 409s Selecting previously unselected package libgpgmepp6t64:armhf. 409s Preparing to unpack .../069-libgpgmepp6t64_1.24.2-1ubuntu2_armhf.deb ... 409s Unpacking libgpgmepp6t64:armhf (1.24.2-1ubuntu2) ... 409s Selecting previously unselected package liblcms2-2:armhf. 409s Preparing to unpack .../070-liblcms2-2_2.16-2_armhf.deb ... 409s Unpacking liblcms2-2:armhf (2.16-2) ... 409s Selecting previously unselected package libpoppler147:armhf. 409s Preparing to unpack .../071-libpoppler147_25.03.0-2_armhf.deb ... 409s Unpacking libpoppler147:armhf (25.03.0-2) ... 409s Selecting previously unselected package libpq5:armhf. 409s Preparing to unpack .../072-libpq5_17.4-1_armhf.deb ... 409s Unpacking libpq5:armhf (17.4-1) ... 409s Selecting previously unselected package libqhull-r8.0:armhf. 409s Preparing to unpack .../073-libqhull-r8.0_2020.2-6build1_armhf.deb ... 409s Unpacking libqhull-r8.0:armhf (2020.2-6build1) ... 409s Selecting previously unselected package librttopo1:armhf. 409s Preparing to unpack .../074-librttopo1_1.1.0-4_armhf.deb ... 409s Unpacking librttopo1:armhf (1.1.0-4) ... 409s Selecting previously unselected package libspatialite8t64:armhf. 409s Preparing to unpack .../075-libspatialite8t64_5.1.0-3build1_armhf.deb ... 409s Unpacking libspatialite8t64:armhf (5.1.0-3build1) ... 409s Selecting previously unselected package libxerces-c3.2t64:armhf. 409s Preparing to unpack .../076-libxerces-c3.2t64_3.2.4+debian-1.3build1_armhf.deb ... 409s Unpacking libxerces-c3.2t64:armhf (3.2.4+debian-1.3build1) ... 409s Selecting previously unselected package libgdal36:armhf. 409s Preparing to unpack .../077-libgdal36_3.10.2+dfsg-1build3_armhf.deb ... 409s Unpacking libgdal36:armhf (3.10.2+dfsg-1build3) ... 409s Selecting previously unselected package libgomp1:armhf. 409s Preparing to unpack .../078-libgomp1_15-20250222-0ubuntu1_armhf.deb ... 409s Unpacking libgomp1:armhf (15-20250222-0ubuntu1) ... 409s Selecting previously unselected package libgraphite2-3:armhf. 409s Preparing to unpack .../079-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 409s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 409s Selecting previously unselected package libharfbuzz0b:armhf. 409s Preparing to unpack .../080-libharfbuzz0b_10.2.0-1_armhf.deb ... 409s Unpacking libharfbuzz0b:armhf (10.2.0-1) ... 409s Selecting previously unselected package x11-common. 409s Preparing to unpack .../081-x11-common_1%3a7.7+23ubuntu3_all.deb ... 409s Unpacking x11-common (1:7.7+23ubuntu3) ... 409s Selecting previously unselected package libice6:armhf. 409s Preparing to unpack .../082-libice6_2%3a1.1.1-1_armhf.deb ... 409s Unpacking libice6:armhf (2:1.1.1-1) ... 409s Selecting previously unselected package libthai-data. 409s Preparing to unpack .../083-libthai-data_0.1.29-2build1_all.deb ... 409s Unpacking libthai-data (0.1.29-2build1) ... 409s Selecting previously unselected package libthai0:armhf. 409s Preparing to unpack .../084-libthai0_0.1.29-2build1_armhf.deb ... 409s Unpacking libthai0:armhf (0.1.29-2build1) ... 409s Selecting previously unselected package libpango-1.0-0:armhf. 410s Preparing to unpack .../085-libpango-1.0-0_1.56.1-1_armhf.deb ... 410s Unpacking libpango-1.0-0:armhf (1.56.1-1) ... 410s Selecting previously unselected package libpangoft2-1.0-0:armhf. 410s Preparing to unpack .../086-libpangoft2-1.0-0_1.56.1-1_armhf.deb ... 410s Unpacking libpangoft2-1.0-0:armhf (1.56.1-1) ... 410s Selecting previously unselected package libpangocairo-1.0-0:armhf. 410s Preparing to unpack .../087-libpangocairo-1.0-0_1.56.1-1_armhf.deb ... 410s Unpacking libpangocairo-1.0-0:armhf (1.56.1-1) ... 410s Selecting previously unselected package libpaper2:armhf. 410s Preparing to unpack .../088-libpaper2_2.2.5-0.3_armhf.deb ... 410s Unpacking libpaper2:armhf (2.2.5-0.3) ... 410s Selecting previously unselected package libpaper-utils. 410s Preparing to unpack .../089-libpaper-utils_2.2.5-0.3_armhf.deb ... 410s Unpacking libpaper-utils (2.2.5-0.3) ... 410s Selecting previously unselected package libsm6:armhf. 410s Preparing to unpack .../090-libsm6_2%3a1.2.4-1_armhf.deb ... 410s Unpacking libsm6:armhf (2:1.2.4-1) ... 410s Selecting previously unselected package libtcl8.6:armhf. 410s Preparing to unpack .../091-libtcl8.6_8.6.16+dfsg-1_armhf.deb ... 410s Unpacking libtcl8.6:armhf (8.6.16+dfsg-1) ... 410s Selecting previously unselected package libxft2:armhf. 410s Preparing to unpack .../092-libxft2_2.3.6-1build1_armhf.deb ... 410s Unpacking libxft2:armhf (2.3.6-1build1) ... 410s Selecting previously unselected package libxss1:armhf. 410s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build3_armhf.deb ... 410s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 410s Selecting previously unselected package libtk8.6:armhf. 410s Preparing to unpack .../094-libtk8.6_8.6.16-1_armhf.deb ... 410s Unpacking libtk8.6:armhf (8.6.16-1) ... 410s Selecting previously unselected package libudunits2-data. 410s Preparing to unpack .../095-libudunits2-data_2.2.28-7build1_all.deb ... 410s Unpacking libudunits2-data (2.2.28-7build1) ... 410s Selecting previously unselected package libudunits2-0. 410s Preparing to unpack .../096-libudunits2-0_2.2.28-7build1_armhf.deb ... 410s Unpacking libudunits2-0 (2.2.28-7build1) ... 410s Selecting previously unselected package libxt6t64:armhf. 410s Preparing to unpack .../097-libxt6t64_1%3a1.2.1-1.2build1_armhf.deb ... 410s Unpacking libxt6t64:armhf (1:1.2.1-1.2build1) ... 410s Selecting previously unselected package zip. 410s Preparing to unpack .../098-zip_3.0-14ubuntu2_armhf.deb ... 410s Unpacking zip (3.0-14ubuntu2) ... 410s Selecting previously unselected package unzip. 410s Preparing to unpack .../099-unzip_6.0-28ubuntu6_armhf.deb ... 410s Unpacking unzip (6.0-28ubuntu6) ... 410s Selecting previously unselected package xdg-utils. 410s Preparing to unpack .../100-xdg-utils_1.2.1-2ubuntu1_all.deb ... 410s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 410s Selecting previously unselected package r-base-core. 410s Preparing to unpack .../101-r-base-core_4.4.3-1_armhf.deb ... 410s Unpacking r-base-core (4.4.3-1) ... 411s Selecting previously unselected package r-cran-littler. 411s Preparing to unpack .../102-r-cran-littler_0.3.20-2_armhf.deb ... 411s Unpacking r-cran-littler (0.3.20-2) ... 411s Selecting previously unselected package littler. 411s Preparing to unpack .../103-littler_0.3.20-2_all.deb ... 411s Unpacking littler (0.3.20-2) ... 411s Selecting previously unselected package r-cran-abind. 411s Preparing to unpack .../104-r-cran-abind_1.4-8-1_all.deb ... 411s Unpacking r-cran-abind (1.4-8-1) ... 411s Selecting previously unselected package r-cran-mass. 411s Preparing to unpack .../105-r-cran-mass_7.3-64-1_armhf.deb ... 411s Unpacking r-cran-mass (7.3-64-1) ... 411s Selecting previously unselected package r-cran-class. 411s Preparing to unpack .../106-r-cran-class_7.3-23-1_armhf.deb ... 411s Unpacking r-cran-class (7.3-23-1) ... 411s Selecting previously unselected package r-cran-proxy. 411s Preparing to unpack .../107-r-cran-proxy_0.4-27-1_armhf.deb ... 411s Unpacking r-cran-proxy (0.4-27-1) ... 411s Selecting previously unselected package r-cran-e1071. 411s Preparing to unpack .../108-r-cran-e1071_1.7-16-1_armhf.deb ... 411s Unpacking r-cran-e1071 (1.7-16-1) ... 411s Selecting previously unselected package r-cran-kernsmooth. 411s Preparing to unpack .../109-r-cran-kernsmooth_2.23-26-1_armhf.deb ... 411s Unpacking r-cran-kernsmooth (2.23-26-1) ... 411s Selecting previously unselected package r-cran-classint. 411s Preparing to unpack .../110-r-cran-classint_0.4-11+dfsg-1_armhf.deb ... 411s Unpacking r-cran-classint (0.4-11+dfsg-1) ... 411s Selecting previously unselected package r-cran-cli. 411s Preparing to unpack .../111-r-cran-cli_3.6.4-1_armhf.deb ... 411s Unpacking r-cran-cli (3.6.4-1) ... 411s Selecting previously unselected package r-cran-codetools. 411s Preparing to unpack .../112-r-cran-codetools_0.2-20-1_all.deb ... 411s Unpacking r-cran-codetools (0.2-20-1) ... 411s Selecting previously unselected package r-cran-colorspace. 411s Preparing to unpack .../113-r-cran-colorspace_2.1-1+dfsg-1_armhf.deb ... 411s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 411s Selecting previously unselected package r-cran-dbi. 411s Preparing to unpack .../114-r-cran-dbi_1.2.3-1_all.deb ... 411s Unpacking r-cran-dbi (1.2.3-1) ... 411s Selecting previously unselected package r-cran-digest. 411s Preparing to unpack .../115-r-cran-digest_0.6.37-1_armhf.deb ... 411s Unpacking r-cran-digest (0.6.37-1) ... 411s Selecting previously unselected package r-cran-dotcall64. 411s Preparing to unpack .../116-r-cran-dotcall64_1.2-1_armhf.deb ... 411s Unpacking r-cran-dotcall64 (1.2-1) ... 411s Selecting previously unselected package r-cran-fansi. 411s Preparing to unpack .../117-r-cran-fansi_1.0.5-1_armhf.deb ... 411s Unpacking r-cran-fansi (1.0.5-1) ... 411s Selecting previously unselected package r-cran-farver. 411s Preparing to unpack .../118-r-cran-farver_2.1.2-1_armhf.deb ... 411s Unpacking r-cran-farver (2.1.2-1) ... 412s Selecting previously unselected package r-cran-pkgkitten. 412s Preparing to unpack .../119-r-cran-pkgkitten_0.2.4-1_all.deb ... 412s Unpacking r-cran-pkgkitten (0.2.4-1) ... 412s Selecting previously unselected package r-cran-rcpp. 412s Preparing to unpack .../120-r-cran-rcpp_1.0.14-1_armhf.deb ... 412s Unpacking r-cran-rcpp (1.0.14-1) ... 412s Selecting previously unselected package r-cran-spam. 412s Preparing to unpack .../121-r-cran-spam_2.11-1-1_armhf.deb ... 412s Unpacking r-cran-spam (2.11-1-1) ... 412s Selecting previously unselected package r-cran-viridislite. 412s Preparing to unpack .../122-r-cran-viridislite_0.4.2-2_all.deb ... 412s Unpacking r-cran-viridislite (0.4.2-2) ... 412s Selecting previously unselected package r-cran-maps. 412s Preparing to unpack .../123-r-cran-maps_3.4.2.1-1_armhf.deb ... 412s Unpacking r-cran-maps (3.4.2.1-1) ... 412s Selecting previously unselected package r-cran-fields. 412s Preparing to unpack .../124-r-cran-fields_16.3.1-1_armhf.deb ... 412s Unpacking r-cran-fields (16.3.1-1) ... 412s Selecting previously unselected package r-cran-fnn. 412s Preparing to unpack .../125-r-cran-fnn_1.1.4.1-1_armhf.deb ... 412s Unpacking r-cran-fnn (1.1.4.1-1) ... 412s Selecting previously unselected package r-cran-globals. 412s Preparing to unpack .../126-r-cran-globals_0.16.3-1_all.deb ... 412s Unpacking r-cran-globals (0.16.3-1) ... 412s Selecting previously unselected package r-cran-listenv. 412s Preparing to unpack .../127-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 412s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 412s Selecting previously unselected package r-cran-parallelly. 412s Preparing to unpack .../128-r-cran-parallelly_1.42.0-1_armhf.deb ... 412s Unpacking r-cran-parallelly (1.42.0-1) ... 412s Selecting previously unselected package r-cran-future. 412s Preparing to unpack .../129-r-cran-future_1.34.0+dfsg-1_all.deb ... 412s Unpacking r-cran-future (1.34.0+dfsg-1) ... 412s Selecting previously unselected package r-cran-future.apply. 412s Preparing to unpack .../130-r-cran-future.apply_1.11.3+dfsg-1_all.deb ... 412s Unpacking r-cran-future.apply (1.11.3+dfsg-1) ... 412s Selecting previously unselected package r-cran-glue. 412s Preparing to unpack .../131-r-cran-glue_1.8.0-1_armhf.deb ... 412s Unpacking r-cran-glue (1.8.0-1) ... 412s Selecting previously unselected package r-cran-rlang. 412s Preparing to unpack .../132-r-cran-rlang_1.1.5-1_armhf.deb ... 412s Unpacking r-cran-rlang (1.1.5-1) ... 412s Selecting previously unselected package r-cran-lifecycle. 412s Preparing to unpack .../133-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 412s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 412s Selecting previously unselected package r-cran-gtable. 413s Preparing to unpack .../134-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 413s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 413s Selecting previously unselected package r-cran-isoband. 413s Preparing to unpack .../135-r-cran-isoband_0.2.7-1_armhf.deb ... 413s Unpacking r-cran-isoband (0.2.7-1) ... 413s Selecting previously unselected package r-cran-lattice. 413s Preparing to unpack .../136-r-cran-lattice_0.22-6-1_armhf.deb ... 413s Unpacking r-cran-lattice (0.22-6-1) ... 413s Selecting previously unselected package r-cran-nlme. 413s Preparing to unpack .../137-r-cran-nlme_3.1.167-1_armhf.deb ... 413s Unpacking r-cran-nlme (3.1.167-1) ... 413s Selecting previously unselected package r-cran-matrix. 413s Preparing to unpack .../138-r-cran-matrix_1.7-3-1_armhf.deb ... 413s Unpacking r-cran-matrix (1.7-3-1) ... 413s Selecting previously unselected package r-cran-mgcv. 413s Preparing to unpack .../139-r-cran-mgcv_1.9-1-1_armhf.deb ... 413s Unpacking r-cran-mgcv (1.9-1-1) ... 413s Selecting previously unselected package r-cran-labeling. 413s Preparing to unpack .../140-r-cran-labeling_0.4.3-1_all.deb ... 413s Unpacking r-cran-labeling (0.4.3-1) ... 413s Selecting previously unselected package r-cran-munsell. 413s Preparing to unpack .../141-r-cran-munsell_0.5.1-1_all.deb ... 413s Unpacking r-cran-munsell (0.5.1-1) ... 413s Selecting previously unselected package r-cran-r6. 413s Preparing to unpack .../142-r-cran-r6_2.6.1-1_all.deb ... 413s Unpacking r-cran-r6 (2.6.1-1) ... 413s Selecting previously unselected package r-cran-rcolorbrewer. 413s Preparing to unpack .../143-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 413s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 413s Selecting previously unselected package r-cran-scales. 413s Preparing to unpack .../144-r-cran-scales_1.3.0-1_all.deb ... 413s Unpacking r-cran-scales (1.3.0-1) ... 413s Selecting previously unselected package r-cran-magrittr. 413s Preparing to unpack .../145-r-cran-magrittr_2.0.3-1_armhf.deb ... 413s Unpacking r-cran-magrittr (2.0.3-1) ... 413s Selecting previously unselected package r-cran-utf8. 413s Preparing to unpack .../146-r-cran-utf8_1.2.4-1_armhf.deb ... 413s Unpacking r-cran-utf8 (1.2.4-1) ... 413s Selecting previously unselected package r-cran-vctrs. 413s Preparing to unpack .../147-r-cran-vctrs_0.6.5-1_armhf.deb ... 413s Unpacking r-cran-vctrs (0.6.5-1) ... 413s Selecting previously unselected package r-cran-pillar. 413s Preparing to unpack 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libheif-plugin-aomdec:armhf (1.19.7-1) ... 419s Setting up libheif-plugin-libde265:armhf (1.19.7-1) ... 419s Setting up libheif1:armhf (1.19.7-1) ... 419s Setting up libgdal36:armhf (3.10.2+dfsg-1build3) ... 419s Setting up r-cran-sf (1.0-19+dfsg-1) ... 419s Setting up r-cran-stars (0.6-8-1) ... 419s Setting up r-cran-sftime (0.2-0-6) ... 419s Setting up r-cran-gstat (2.1-3-1) ... 419s Setting up r-cran-terra (1.8-29-1) ... 419s Setting up r-cran-raster (3.6-31-1) ... 419s Processing triggers for install-info (7.1.1-1) ... 419s Processing triggers for libc-bin (2.41-1ubuntu2) ... 419s Processing triggers for man-db (2.13.0-1) ... 428s autopkgtest [12:41:36]: test run-unit-test: [----------------------- 430s BEGIN TEST allier.R 430s 430s R version 4.4.3 (2025-02-28) -- "Trophy Case" 430s Copyright (C) 2025 The R Foundation for Statistical Computing 430s Platform: arm-unknown-linux-gnueabihf (32-bit) 430s 430s R is free software and comes with ABSOLUTELY NO WARRANTY. 430s You are welcome to redistribute it under certain conditions. 430s Type 'license()' or 'licence()' for distribution details. 430s 430s R is a collaborative project with many contributors. 430s Type 'contributors()' for more information and 430s 'citation()' on how to cite R or R packages in publications. 430s 430s Type 'demo()' for some demos, 'help()' for on-line help, or 430s 'help.start()' for an HTML browser interface to help. 430s Type 'q()' to quit R. 430s 430s > # Sytze de Bruin's post to r-sig-geo, Nov 16, 2015: 430s > library(sp) 431s > library(gstat) 431s > 431s > # some data 431s > x <- c(215, 330, 410, 470, 545) 431s > y <- c(230, 310, 330, 340, 365) 431s > fc <- c(0.211, 0.251, 0.281, 0.262, 0.242) 431s > por <- c(0.438, 0.457, 0.419, 0.430, 0.468) 431s > Allier <- data.frame(x, y, fc, por) 431s > coordinates(Allier) = ~x+y 431s > 431s > # gstat object for co-kriging using linear model of co-regionalization 431s > g <- gstat(id=c("fc"), formula=fc~1, data=Allier, 431s + model=vgm(0.00247, "Sph", 480, 0.00166)) 431s > g <- gstat(g, id="por", formula=por~1, data=Allier, 431s + model=vgm(0.00239, "Sph", 480, 0.00118)) 431s > g <- gstat(g, id=c("fc", "por"), 431s + model=vgm(0.00151, "Sph", 480, -0.00124)) 431s > 431s > # predict at single point 431s > g$set = list(choleski = 0) # LDL' 431s > A <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 431s Linear Model of Coregionalization found. Good. 431s [using ordinary cokriging] 431s we're at location X: 450 Y: 350 Z: 0 431s zero block size 431s we're at point X: 450 Y: 350 Z: 0 431s 431s # X: 431s #Matrix: 10 by 2 431s rbind( 431s c( 1.000000, 0.000000), # row 1 431s c( 1.000000, 0.000000), # row 2 431s c( 1.000000, 0.000000), # row 3 431s c( 1.000000, 0.000000), # row 4 431s c( 1.000000, 0.000000), # row 5 431s c( 0.000000, 1.000000), # row 6 431s c( 0.000000, 1.000000), # row 7 431s c( 0.000000, 1.000000), # row 8 431s c( 0.000000, 1.000000), # row 9 431s c( 0.000000, 1.000000) # row 10 431s ) 431s [using generalized covariances: max_val - semivariance()] 431s # Covariances (x_i, x_j) matrix C (upper triangle): 431s #Matrix: 10 by 10 431s rbind( 431s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 431s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 431s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 431s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 431s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 431s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 431s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 431s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 431s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 431s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 431s ) 431s 431s # glm->C, LDL' decomposed:: 431s #Matrix: 10 by 10 431s rbind( 431s c( 0.003399, 0.372269, 0.208612, 0.127967, 0.016746, -0.025847, 0.223862, 0.148767, 0.104047, 0.038371), # row 1 431s c( 0.000000, 0.002661, 0.483725, 0.327484, 0.153742, 0.233021, -0.125118, 0.262410, 0.219271, 0.150536), # row 2 431s c( 0.000000, 0.000000, 0.002276, 0.540203, 0.303585, 0.058071, 0.314376, -0.175899, 0.295181, 0.243817), # row 3 431s c( 0.000000, 0.000000, 0.000000, 0.002484, 0.483068, 0.000301, 0.115816, 0.377362, -0.115338, 0.319418), # row 4 431s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.003690, -0.038142, 0.000474, 0.120915, 0.377730, 0.075630), # row 5 431s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003019, 0.354325, 0.235465, 0.164684, 0.060733), # row 6 431s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002623, 0.415337, 0.347059, 0.238266), # row 7 431s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002458, 0.467207, 0.385909), # row 8 431s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002658, 0.505569), # row 9 431s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003570) # row 10 431s ) 431s 431s # X'C-1 X: 431s #Matrix: 2 by 2 431s rbind( 431s c(665.433994, -232.313340), # row 1 431s c(-232.313340, 729.440848) # row 2 431s ) 431s 431s # beta: 431s #Vector: dim: 2 431s c( 0.244216, 0.440933) 431s # Cov(beta), (X'C-1 X)-1: 431s #Matrix: 2 by 2 431s rbind( 431s c( 0.001691, 0.000538), # row 1 431s c( 0.000538, 0.001542) # row 2 431s ) 431s 431s # Corr(beta): 431s #Matrix: 2 by 2 431s rbind( 431s c( 1.000000, 0.333447), # row 1 431s c( 0.333447, 1.000000) # row 2 431s ) 431s 431s # X0 (X values at prediction location x0): 431s #Matrix: 2 by 2 431s rbind( 431s c( 1.000000, 0.000000), # row 1 431s c( 0.000000, 1.000000) # row 2 431s ) 431s 431s # BLUE(mu), E(y(x0)) = X0'beta: 431s #Vector: dim: 2 431s c( 0.244216, 0.440933) 431s # Covariances (x_i, x_0), C0: 431s #Matrix: 10 by 2 431s rbind( 431s c( 0.000638, 0.000390), # row 1 431s c( 0.001516, 0.000927), # row 2 431s c( 0.002126, 0.001300), # row 3 431s c( 0.002298, 0.001405), # row 4 431s c( 0.001738, 0.001062), # row 5 431s c( 0.000390, 0.000618), # row 6 431s c( 0.000927, 0.001467), # row 7 431s c( 0.001300, 0.002057), # row 8 431s c( 0.001405, 0.002223), # row 9 431s c( 0.001062, 0.001681) # row 10 431s ) 431s 431s # C-1 C0: 431s #Matrix: 10 by 2 431s rbind( 431s c( 0.008927, -0.017995), # row 1 431s c( 0.061935, -0.028550), # row 2 431s c( 0.225195, 0.078344), # row 3 431s c( 0.356735, 0.190177), # row 4 431s c( 0.094128, -0.023136), # row 5 431s c(-0.021119, 0.004935), # row 6 431s c(-0.033508, 0.055601), # row 7 431s c( 0.091947, 0.242576), # row 8 431s c( 0.223200, 0.398927), # row 9 431s c(-0.027153, 0.088995) # row 10 431s ) 431s 431s # [a] Cov_ij(B,B) or Cov_ij(0,0): 431s #Matrix: 2 by 2 431s rbind( 431s c( 0.004130, 0.000270), # row 1 431s c( 0.000270, 0.003570) # row 2 431s ) 431s 431s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 431s #Matrix: 2 by 2 431s rbind( 431s c( 0.000129, -0.000107), # row 1 431s c(-0.000107, 0.000089) # row 2 431s ) 431s 431s # [b] c0'C-1 c0: 431s #Matrix: 2 by 2 431s rbind( 431s c( 0.001926, 0.001532), # row 1 431s c( 0.001532, 0.001931) # row 2 431s ) 431s 431s # Best Linear Unbiased Predictor: 431s #Vector: dim: 2 431s c( 0.253090, 0.441258) 431s # MSPE ([a]-[b]+[c]): 431s #Matrix: 2 by 2 431s rbind( 431s c( 0.002332, -0.001369), # row 1 431s c(-0.001369, 0.001729) # row 2 431s ) 431s 431s # kriging weights: 431s #Matrix: 10 by 2 431s rbind( 431s c( 0.071177, -0.064988), # row 1 431s c( 0.108451, -0.066123), # row 2 431s c( 0.268160, 0.043141), # row 3 431s c( 0.401959, 0.153312), # row 4 431s c( 0.150253, -0.065342), # row 5 431s c(-0.076273, 0.056759), # row 6 431s c(-0.077605, 0.093781), # row 7 431s c( 0.050632, 0.277731), # row 8 431s c( 0.179933, 0.435972), # row 9 431s c(-0.076688, 0.135756) # row 10 431s ) 431s 431s 431s > g$set = list(choleski = 1) # Choleski 431s > B <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 431s Linear Model of Coregionalization found. Good. 431s [using ordinary cokriging] 431s we're at location X: 450 Y: 350 Z: 0 431s zero block size 431s we're at point X: 450 Y: 350 Z: 0 431s 431s # X: 431s #Matrix: 10 by 2 431s rbind( 431s c( 1.000000, 0.000000), # row 1 431s c( 1.000000, 0.000000), # row 2 431s c( 1.000000, 0.000000), # row 3 431s c( 1.000000, 0.000000), # row 4 431s c( 1.000000, 0.000000), # row 5 431s c( 0.000000, 1.000000), # row 6 431s c( 0.000000, 1.000000), # row 7 431s c( 0.000000, 1.000000), # row 8 431s c( 0.000000, 1.000000), # row 9 431s c( 0.000000, 1.000000) # row 10 431s ) 431s [using generalized covariances: max_val - semivariance()] 431s # Covariances (x_i, x_j) matrix C (upper triangle): 431s #Matrix: 10 by 10 431s rbind( 431s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 431s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 431s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 431s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 431s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 431s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 431s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 431s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 431s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 431s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 431s ) 431s 431s # glm->C, Choleski decomposed:: 431s #Matrix: 10 by 10 431s rbind( 431s c( 0.064265, 0.022086, 0.013942, 0.008801, 0.003487, 0.004201, 0.013502, 0.008523, 0.005380, 0.002132), # row 1 431s c( 0.000000, 0.060351, 0.025382, 0.019938, 0.013290, 0.012840, -0.000468, 0.015517, 0.012189, 0.008125), # row 2 431s c( 0.000000, 0.000000, 0.057370, 0.023954, 0.018091, 0.002846, 0.016530, -0.004230, 0.014644, 0.011059), # row 3 431s c( 0.000000, 0.000000, 0.000000, 0.055509, 0.020471, -0.000277, 0.006286, 0.016960, -0.006686, 0.012514), # row 4 431s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.056523, -0.001665, 0.001218, 0.006437, 0.014711, -0.005337), # row 5 431s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.058108, 0.022018, 0.011347, 0.006008, 0.001147), # row 6 431s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.050877, 0.027084, 0.018381, 0.010720), # row 7 431s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.045247, 0.026914, 0.017658), # row 8 431s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.042645, 0.023811), # row 9 431s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.046872) # row 10 431s ) 431s 431s # X'C-1 X: 431s #Matrix: 2 by 2 431s rbind( 431s c(665.433994, -232.313340), # row 1 431s c(-232.313340, 729.440848) # row 2 431s ) 431s 431s # beta: 431s #Vector: dim: 2 431s c( 0.244216, 0.440933) 431s # Cov(beta), (X'C-1 X)-1: 431s #Matrix: 2 by 2 431s rbind( 431s c( 0.001691, 0.000538), # row 1 431s c( 0.000538, 0.001542) # row 2 431s ) 431s 431s # Corr(beta): 431s #Matrix: 2 by 2 431s rbind( 431s c( 1.000000, 0.333447), # row 1 431s c( 0.333447, 1.000000) # row 2 431s ) 431s 431s # X0 (X values at prediction location x0): 431s #Matrix: 2 by 2 431s rbind( 431s c( 1.000000, 0.000000), # row 1 431s c( 0.000000, 1.000000) # row 2 431s ) 431s 431s # BLUE(mu), E(y(x0)) = X0'beta: 431s #Vector: dim: 2 431s c( 0.244216, 0.440933) 431s # Covariances (x_i, x_0), C0: 431s #Matrix: 10 by 2 431s rbind( 431s c( 0.000638, 0.000390), # row 1 431s c( 0.001516, 0.000927), # row 2 431s c( 0.002126, 0.001300), # row 3 431s c( 0.002298, 0.001405), # row 4 431s c( 0.001738, 0.001062), # row 5 431s c( 0.000390, 0.000618), # row 6 431s c( 0.000927, 0.001467), # row 7 431s c( 0.001300, 0.002057), # row 8 431s c( 0.001405, 0.002223), # row 9 431s c( 0.001062, 0.001681) # row 10 431s ) 431s 431s # C-1 C0: 431s #Matrix: 10 by 2 431s rbind( 431s c( 0.008927, -0.017995), # row 1 431s c( 0.061935, -0.028550), # row 2 431s c( 0.225195, 0.078344), # row 3 431s c( 0.356735, 0.190177), # row 4 431s c( 0.094128, -0.023136), # row 5 431s c(-0.021119, 0.004935), # row 6 431s c(-0.033508, 0.055601), # row 7 431s c( 0.091947, 0.242576), # row 8 431s c( 0.223200, 0.398927), # row 9 431s c(-0.027153, 0.088995) # row 10 431s ) 431s 431s # [a] Cov_ij(B,B) or Cov_ij(0,0): 431s #Matrix: 2 by 2 431s rbind( 431s c( 0.004130, 0.000270), # row 1 431s c( 0.000270, 0.003570) # row 2 431s ) 431s 431s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 431s #Matrix: 2 by 2 431s rbind( 431s c( 0.000129, -0.000107), # row 1 431s c(-0.000107, 0.000089) # row 2 431s ) 431s 431s # [b] c0'C-1 c0: 431s #Matrix: 2 by 2 431s rbind( 431s c( 0.001926, 0.001532), # row 1 431s c( 0.001532, 0.001931) # row 2 431s ) 431s 431s # Best Linear Unbiased Predictor: 431s #Vector: dim: 2 431s c( 0.253090, 0.441258) 431s # MSPE ([a]-[b]+[c]): 431s #Matrix: 2 by 2 431s rbind( 431s c( 0.002332, -0.001369), # row 1 431s c(-0.001369, 0.001729) # row 2 431s ) 431s 431s # kriging weights: 431s #Matrix: 10 by 2 431s rbind( 431s c( 0.071177, -0.064988), # row 1 431s c( 0.108451, -0.066123), # row 2 431s c( 0.268160, 0.043141), # row 3 431s c( 0.401959, 0.153312), # row 4 431s c( 0.150253, -0.065342), # row 5 431s c(-0.076273, 0.056759), # row 6 431s c(-0.077605, 0.093781), # row 7 431s c( 0.050632, 0.277731), # row 8 431s c( 0.179933, 0.435972), # row 9 431s c(-0.076688, 0.135756) # row 10 431s ) 431s 431s 431s > all.equal(A,B) 431s [1] TRUE 431s > 431s > # TRUE 431s > 431s BEGIN TEST blockkr.R 431s 431s R version 4.4.3 (2025-02-28) -- "Trophy Case" 431s Copyright (C) 2025 The R Foundation for Statistical Computing 431s Platform: arm-unknown-linux-gnueabihf (32-bit) 431s 431s R is free software and comes with ABSOLUTELY NO WARRANTY. 431s You are welcome to redistribute it under certain conditions. 431s Type 'license()' or 'licence()' for distribution details. 431s 431s R is a collaborative project with many contributors. 431s Type 'contributors()' for more information and 431s 'citation()' on how to cite R or R packages in publications. 431s 431s Type 'demo()' for some demos, 'help()' for on-line help, or 431s 'help.start()' for an HTML browser interface to help. 431s Type 'q()' to quit R. 431s 431s > library(sp) 432s > data(meuse) 432s > coordinates(meuse) = c("x", "y") 432s > new.locs <- SpatialPoints(data.frame( 432s + x = c(181170, 180310, 180205, 178673, 178770, 178270), 432s + y = c(333250, 332189, 331707, 330066, 330675, 331075))) 432s > library(gstat) 432s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 432s + block = c(40,40), nmax = 40) 432s [using ordinary kriging] 432s coordinates var1.pred var1.var 432s 1 (181170, 333250) 268.7576 19447.67 432s 2 (180310, 332189) 663.4915 16991.33 432s 3 (180205, 331707) 251.4606 21579.71 432s 4 (178673, 330066) 532.5776 73807.91 432s 5 (178770, 330675) 664.4039 23589.17 432s 6 (178270, 331075) 565.5436 155113.23 432s > 432s > new.locs <- SpatialPoints(data.frame(x = c(181170), y = c(333250))) 432s > 432s > disc = c(-15,-5,5,15) 432s > block.irreg <- data.frame(expand.grid(x = disc, y = disc)) 432s > block.irreg 432s x y 432s 1 -15 -15 432s 2 -5 -15 432s 3 5 -15 432s 4 15 -15 432s 5 -15 -5 432s 6 -5 -5 432s 7 5 -5 432s 8 15 -5 432s 9 -15 5 432s 10 -5 5 432s 11 5 5 432s 12 15 5 432s 13 -15 15 432s 14 -5 15 432s 15 5 15 432s 16 15 15 432s > 432s > # first disable default Gaussian quadrature used for block integration, by 432s > # setting nblockdiscr explicitly: 432s > krige(zinc ~ 1, meuse, new.locs, model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 432s + block = c(40,40), nmax = 40, set = list(nblockdiscr=4)) 432s [using ordinary kriging] 432s coordinates var1.pred var1.var 432s 1 (181170, 333250) 268.7324 19568.76 432s > # now pass the same block discretization as block.irreg: 432s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 432s + block = block.irreg, nmax = 40) 432s [using ordinary kriging] 432s coordinates var1.pred var1.var 432s 1 (181170, 333250) 268.7324 19568.76 432s > # check weights argument: 432s > block.irreg <- data.frame(expand.grid(x = disc, y = disc), weights = rep(1/16, 16)) 432s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 432s + block = block.irreg, nmax = 40) 432s [using ordinary kriging] 432s coordinates var1.pred var1.var 432s 1 (181170, 333250) 268.7324 19568.76 432s > 432s BEGIN TEST covtable.R 432s 432s R version 4.4.3 (2025-02-28) -- "Trophy Case" 432s Copyright (C) 2025 The R Foundation for Statistical Computing 432s Platform: arm-unknown-linux-gnueabihf (32-bit) 432s 432s R is free software and comes with ABSOLUTELY NO WARRANTY. 432s You are welcome to redistribute it under certain conditions. 432s Type 'license()' or 'licence()' for distribution details. 432s 432s R is a collaborative project with many contributors. 432s Type 'contributors()' for more information and 432s 'citation()' on how to cite R or R packages in publications. 432s 432s Type 'demo()' for some demos, 'help()' for on-line help, or 432s 'help.start()' for an HTML browser interface to help. 432s Type 'q()' to quit R. 432s 432s > library(gstat) 433s > d=expand.grid(x=c(-.5,.5), y=c(-.5,.5)) 433s > d$z=1:4 433s > vv=vgm(model = "Tab", covtable = 433s + variogramLine(vgm(1, "Sph", 1), 1, n=1e4,min = 0, covariance = TRUE)) 433s > vv 433s model psill maxdist 433s 1 Tab NA 1 433s covariance table: 433s [1] 1.0000000 0.7039712 0.4319496 0.2080384 0.0560108 0.0000000 433s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vgm(1, "Sph", 1)) 433s [using ordinary kriging] 433s x y var1.pred var1.var 433s 1 0 0 2.5 1.017767 433s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vv) 433s [using ordinary kriging] 433s x y var1.pred var1.var 433s 1 0 0 2.5 1.017863 433s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vgm(1, "Sph", 1)) 433s [using ordinary kriging] 433s x y var1.pred var1.var 433s 1 0 0 1.5 1.267767 433s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vv) 433s [using ordinary kriging] 433s x y var1.pred var1.var 433s 1 0 0 1.5 1.267863 433s > 433s BEGIN TEST cv.R 433s 433s R version 4.4.3 (2025-02-28) -- "Trophy Case" 433s Copyright (C) 2025 The R Foundation for Statistical Computing 433s Platform: arm-unknown-linux-gnueabihf (32-bit) 433s 433s R is free software and comes with ABSOLUTELY NO WARRANTY. 433s You are welcome to redistribute it under certain conditions. 433s Type 'license()' or 'licence()' for distribution details. 433s 433s R is a collaborative project with many contributors. 433s Type 'contributors()' for more information and 433s 'citation()' on how to cite R or R packages in publications. 433s 433s Type 'demo()' for some demos, 'help()' for on-line help, or 433s 'help.start()' for an HTML browser interface to help. 433s Type 'q()' to quit R. 433s 433s > # try bivariate cokriging; cross validate first variable 433s > library(sp) 434s > data(meuse) 434s > library(gstat) 434s > g=gstat(NULL, "log-zinc", log(zinc)~1, ~x+y, meuse, nmax=10) 434s > g=gstat(g, "log-lead", log(lead)~1, ~x+y, meuse, nmax=10) 434s > g=gstat(g, "log-copper", log(copper)~1, ~x+y, meuse, nmax=10) 434s > v=variogram(g) 434s > g=gstat(g, model=vgm(1, "Sph", 1000), fill.all=T) 434s > g=fit.lmc(v, g) 434s > g 434s data: 434s log-zinc : formula = log(zinc)`~`1 ; data dim = 155 x 12 nmax = 10 434s log-lead : formula = log(lead)`~`1 ; data dim = 155 x 12 nmax = 10 434s log-copper : formula = log(copper)`~`1 ; data dim = 155 x 12 nmax = 10 434s variograms: 434s model psill range 434s log-zinc Sph 0.7132435 1000 434s log-lead Sph 0.6133020 1000 434s log-copper Sph 0.3634211 1000 434s log-zinc.log-lead Sph 0.6367012 1000 434s log-zinc.log-copper Sph 0.4570044 1000 434s log-lead.log-copper Sph 0.3934910 1000 434s ~x + y 434s > set.seed(13131) 434s > summary(gstat.cv(g, remove.all=TRUE, nfold=5)) 434s Intrinsic Correlation found. Good. 434s [using ordinary cokriging] 434s Intrinsic Correlation found. Good. 434s [using ordinary cokriging] 434s Intrinsic Correlation found. Good. 434s [using ordinary cokriging] 434s Intrinsic Correlation found. Good. 434s [using ordinary cokriging] 434s Intrinsic Correlation found. Good. 434s [using ordinary cokriging] 434s Warning message: 434s In checkNames(value) : 434s attempt to set invalid names: this may lead to problems later on. See ?make.names 434s log.zinc.pred log.zinc.var observed residual 434s Min. :4.779 Min. :0.05426 Min. :4.727 Min. :-1.317697 434s 1st Qu.:5.396 1st Qu.:0.10872 1st Qu.:5.288 1st Qu.:-0.230224 434s Median :5.858 Median :0.13745 Median :5.787 Median :-0.034374 434s Mean :5.895 Mean :0.15249 Mean :5.886 Mean :-0.009094 434s 3rd Qu.:6.367 3rd Qu.:0.18303 3rd Qu.:6.514 3rd Qu.: 0.244075 434s Max. :7.358 Max. :0.60571 Max. :7.517 Max. : 1.414147 434s zscore fold x y 434s Min. :-3.35764 Min. :1.000 Min. :178605 Min. :329714 434s 1st Qu.:-0.58683 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 434s Median :-0.10755 Median :3.000 Median :179991 Median :331633 434s Mean :-0.02766 Mean :2.852 Mean :180005 Mean :331635 434s 3rd Qu.: 0.70691 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 434s Max. : 3.43370 Max. :5.000 Max. :181390 Max. :333611 434s > summary(gstat.cv(g, remove.all=FALSE, nfold=5)) 434s Intrinsic Correlation found. Good. 434s [using ordinary cokriging] 434s Intrinsic Correlation found. Good. 434s [using ordinary cokriging] 434s Intrinsic Correlation found. Good. 434s [using ordinary cokriging] 434s Intrinsic Correlation found. Good. 434s [using ordinary cokriging] 434s Intrinsic Correlation found. Good. 434s [using ordinary cokriging] 435s Warning message: 435s In checkNames(value) : 435s attempt to set invalid names: this may lead to problems later on. See ?make.names 435s log.zinc.pred log.zinc.var observed residual 435s Min. :4.644 Min. :0.002371 Min. :4.727 Min. :-0.4190977 435s 1st Qu.:5.308 1st Qu.:0.004975 1st Qu.:5.288 1st Qu.:-0.0773273 435s Median :5.777 Median :0.005875 Median :5.787 Median : 0.0006165 435s Mean :5.883 Mean :0.006609 Mean :5.886 Mean : 0.0026164 435s 3rd Qu.:6.422 3rd Qu.:0.007419 3rd Qu.:6.514 3rd Qu.: 0.0825770 435s Max. :7.676 Max. :0.027247 Max. :7.517 Max. : 0.4659503 435s zscore fold x y 435s Min. :-4.793253 Min. :1.000 Min. :178605 Min. :329714 435s 1st Qu.:-1.080725 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 435s Median : 0.007242 Median :3.000 Median :179991 Median :331633 435s Mean : 0.050487 Mean :2.974 Mean :180005 Mean :331635 435s 3rd Qu.: 1.117469 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 435s Max. : 6.475831 Max. :5.000 Max. :181390 Max. :333611 435s > 435s BEGIN TEST cv3d.R 435s 435s R version 4.4.3 (2025-02-28) -- "Trophy Case" 435s Copyright (C) 2025 The R Foundation for Statistical Computing 435s Platform: arm-unknown-linux-gnueabihf (32-bit) 435s 435s R is free software and comes with ABSOLUTELY NO WARRANTY. 435s You are welcome to redistribute it under certain conditions. 435s Type 'license()' or 'licence()' for distribution details. 435s 435s R is a collaborative project with many contributors. 435s Type 'contributors()' for more information and 435s 'citation()' on how to cite R or R packages in publications. 435s 435s Type 'demo()' for some demos, 'help()' for on-line help, or 435s 'help.start()' for an HTML browser interface to help. 435s Type 'q()' to quit R. 435s 435s > options(digits = 4) 435s > set.seed(1131) 435s > d = data.frame(x=runif(50),y=runif(50),z=runif(50),v=rnorm(50)) 435s > library(gstat) 435s > xx = krige.cv(v~1,~x+y+z,d,model=vgm(1,"Exp",1), verbose=F, set=list(debug=0)) 436s > summary(xx) 436s var1.pred var1.var observed residual 436s Min. :-1.163 Min. :0.116 Min. :-2.240 Min. :-2.1755 436s 1st Qu.:-0.571 1st Qu.:0.175 1st Qu.:-0.876 1st Qu.:-0.7881 436s Median :-0.201 Median :0.192 Median :-0.219 Median : 0.1175 436s Mean :-0.165 Mean :0.208 Mean :-0.142 Mean : 0.0233 436s 3rd Qu.: 0.161 3rd Qu.:0.240 3rd Qu.: 0.500 3rd Qu.: 0.8508 436s Max. : 1.085 Max. :0.426 Max. : 1.857 Max. : 2.5224 436s zscore fold x y 436s Min. :-5.168 Min. : 1.0 Min. :0.0068 Min. :0.0034 436s 1st Qu.:-1.875 1st Qu.:13.2 1st Qu.:0.2397 1st Qu.:0.2466 436s Median : 0.245 Median :25.5 Median :0.4867 Median :0.4525 436s Mean : 0.017 Mean :25.5 Mean :0.4997 Mean :0.4969 436s 3rd Qu.: 2.020 3rd Qu.:37.8 3rd Qu.:0.7473 3rd Qu.:0.7394 436s Max. : 7.354 Max. :50.0 Max. :0.9875 Max. :0.9872 436s z 436s Min. :0.0016 436s 1st Qu.:0.1865 436s Median :0.4485 436s Mean :0.4714 436s 3rd Qu.:0.7240 436s Max. :0.9942 436s > 436s BEGIN TEST fit.R 436s 436s R version 4.4.3 (2025-02-28) -- "Trophy Case" 436s Copyright (C) 2025 The R Foundation for Statistical Computing 436s Platform: arm-unknown-linux-gnueabihf (32-bit) 436s 436s R is free software and comes with ABSOLUTELY NO WARRANTY. 436s You are welcome to redistribute it under certain conditions. 436s Type 'license()' or 'licence()' for distribution details. 436s 436s R is a collaborative project with many contributors. 436s Type 'contributors()' for more information and 436s 'citation()' on how to cite R or R packages in publications. 436s 436s Type 'demo()' for some demos, 'help()' for on-line help, or 436s 'help.start()' for an HTML browser interface to help. 436s Type 'q()' to quit R. 436s 436s > library(sp) 436s > data(meuse) 436s > library(gstat) 437s > v=variogram(log(zinc)~1,~x+y,meuse,cutoff=500,wi=100) 437s > v$gamma=c(0.5,1,2,3,3) 437s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=TRUE) 437s model psill range 437s 1 Nug 0.000000 0.00 437s 2 Sph 7.878195 1567.77 437s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=FALSE) 437s model psill range 437s 1 Nug 0.000000 0.00 437s 2 Sph 7.878195 1567.77 437s > 437s Warning message: 437s In fit.variogram(v, vgm(1, "Sph", 300, 0), warn.if.neg = TRUE) : 437s partial sill or nugget fixed at zero value 437s BEGIN TEST krige0.R 437s 437s R version 4.4.3 (2025-02-28) -- "Trophy Case" 437s Copyright (C) 2025 The R Foundation for Statistical Computing 437s Platform: arm-unknown-linux-gnueabihf (32-bit) 437s 437s R is free software and comes with ABSOLUTELY NO WARRANTY. 437s You are welcome to redistribute it under certain conditions. 437s Type 'license()' or 'licence()' for distribution details. 437s 437s R is a collaborative project with many contributors. 437s Type 'contributors()' for more information and 437s 'citation()' on how to cite R or R packages in publications. 437s 437s Type 'demo()' for some demos, 'help()' for on-line help, or 437s 'help.start()' for an HTML browser interface to help. 437s Type 'q()' to quit R. 437s 437s > # test -- load data: 437s > library(sp) 437s > data(meuse) 437s > coordinates(meuse) = ~x+y 437s > data(meuse.grid) 437s > gridded(meuse.grid) = ~x+y 437s > 437s > library(gstat) 438s > # test -- idw 438s > meuse.grid$idw <- idw0(zinc~1, meuse, meuse.grid)[,1] 438s > x <- idw(zinc~1, meuse, meuse.grid) 438s [inverse distance weighted interpolation] 438s > all.equal(x$var1.pred, meuse.grid$idw) 438s [1] TRUE 438s > spplot(meuse.grid["idw"],col.regions=bpy.colors()) 438s > v = vgm(1, "Exp", 500) 438s > # test sk: 438s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, beta = 500, computeVar = TRUE) 438s > rownames(x0$pred)=NULL 438s > x <- krige(zinc~1, meuse, meuse.grid, v, beta = 500) 438s [using simple kriging] 438s > all.equal(x$var1.pred, x0$pred[,1]) 438s [1] TRUE 438s > all.equal(x$var1.var, x0$var) 438s [1] TRUE 438s > # test ok: 438s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, computeVar = TRUE) 439s > rownames(x0$pred)=NULL 439s > names(x0$var)=NULL 439s > x <- krige(zinc~1, meuse, meuse.grid, v) 439s [using ordinary kriging] 439s > all.equal(x$var1.pred, x0$pred[,1]) 439s [1] TRUE 439s > all.equal(x$var1.var, x0$var) 439s [1] TRUE 439s > # test uk: 439s > x0 <- krige0(zinc~sqrt(dist), meuse, meuse.grid, v, computeVar = TRUE) 439s > rownames(x0$pred)=NULL 439s > names(x0$var)=NULL 439s > x <- krige(zinc~sqrt(dist), meuse, meuse.grid, v) 439s [using universal kriging] 439s > all.equal(x$var1.pred, x0$pred[,1]) 439s [1] TRUE 439s > all.equal(x$var1.var, x0$var) 439s [1] TRUE 439s > 439s BEGIN TEST line.R 439s 439s R version 4.4.3 (2025-02-28) -- "Trophy Case" 439s Copyright (C) 2025 The R Foundation for Statistical Computing 439s Platform: arm-unknown-linux-gnueabihf (32-bit) 439s 439s R is free software and comes with ABSOLUTELY NO WARRANTY. 439s You are welcome to redistribute it under certain conditions. 439s Type 'license()' or 'licence()' for distribution details. 439s 439s R is a collaborative project with many contributors. 439s Type 'contributors()' for more information and 439s 'citation()' on how to cite R or R packages in publications. 439s 439s Type 'demo()' for some demos, 'help()' for on-line help, or 439s 'help.start()' for an HTML browser interface to help. 439s Type 'q()' to quit R. 439s 439s > options(digits=5) 439s > library(sp) 439s > data(meuse.grid) 439s > gridded(meuse.grid) = ~x+y 440s > data(meuse) 440s > coordinates(meuse) = ~x+y 440s > 440s > # choose arbitrary line over the grid: 440s > image(meuse.grid["dist"],axes=T) 440s > pp = rbind(c(180000,331000),c(180000,332000),c(181000,333500)) 440s > Sl = SpatialLines(list(Lines(list(Line(pp)), "a"))) 440s > plot(Sl,add=T,col='green') 440s > 440s > # use the default spsample arguments of predict.gstat: 440s > pts=spsample(Sl,n=500,'regular',offset=c(.5,.5)) 440s > plot(pts, pch=3, cex=.2, add=T) 440s > 440s > library(gstat) 440s > v = vgm(.6, "Sph", 900, .06) 440s > out1 = krige(log(zinc)~1, meuse, Sl, v) 440s [using ordinary kriging] 440s > out1 440s An object of class "SpatialLinesDataFrame" 440s Slot "data": 440s x y var1.pred var1.var 440s a 180333 332167 6.1618 0.008025 440s 440s Slot "lines": 440s [[1]] 440s An object of class "Lines" 440s Slot "Lines": 440s [[1]] 440s An object of class "Line" 440s Slot "coords": 440s [,1] [,2] 440s [1,] 180000 331000 440s [2,] 180000 332000 440s [3,] 181000 333500 440s 440s 440s 440s Slot "ID": 440s [1] "a" 440s 440s 440s 440s Slot "bbox": 440s min max 440s x 180000 181000 440s y 331000 333500 440s 440s Slot "proj4string": 440s Coordinate Reference System: 440s Deprecated Proj.4 representation: NA 440s 440s > 440s > points(180333,332167,pch=3,cex=2) 440s > 440s > # use the same line as block discretization, and predict for (0,0) 440s > # (because the block discretizing points are not centered) 440s > out2 = krige(log(zinc)~1, meuse, SpatialPoints(matrix(0,1,2)), v, block=coordinates(pts)) 440s [using ordinary kriging] 440s > out2 440s coordinates var1.pred var1.var 440s 1 (0, 0) 6.1618 0.008025 440s > 440s > compare.krigingLines = function(formula, data, newdata, model) { 440s + out1 = krige(formula, data, newdata, model) 440s + pts = spsample(newdata, n=500, 'regular', offset=.5) 440s + out2 = krige(formula, data, SpatialPoints(matrix(0,1,2)), model, block = coordinates(pts)) 440s + print("difference:") 440s + as.data.frame(out1)[3:4]- as.data.frame(out2)[3:4] 440s + } 440s > 440s > compare.krigingLines(log(zinc)~1, meuse, Sl, v) 440s [using ordinary kriging] 440s [using ordinary kriging] 440s [1] "difference:" 440s var1.pred var1.var 440s a 0 0 440s > 440s > # one line, consisting of two line segments: 440s > pp2 = rbind(c(181000,333500),c(181000,332500)) 440s > Sl2 = SpatialLines(list(Lines(list(Line(pp),Line(pp2)), "a"))) 440s > krige(log(zinc)~1, meuse, Sl2, v) 440s [using ordinary kriging] 440s An object of class "SpatialLinesDataFrame" 440s Slot "data": 440s x y var1.pred var1.var 440s a 180667 332583 6.0424 0.0053191 440s 440s Slot "lines": 440s [[1]] 440s An object of class "Lines" 440s Slot "Lines": 440s [[1]] 440s An object of class "Line" 440s Slot "coords": 440s [,1] [,2] 440s [1,] 180000 331000 440s [2,] 180000 332000 440s [3,] 181000 333500 440s 440s 440s [[2]] 440s An object of class "Line" 440s Slot "coords": 440s [,1] [,2] 440s [1,] 181000 333500 440s [2,] 181000 332500 440s 440s 440s 440s Slot "ID": 440s [1] "a" 440s 440s 440s 440s Slot "bbox": 440s min max 440s x 180000 181000 440s y 331000 333500 440s 440s Slot "proj4string": 440s Coordinate Reference System: 440s Deprecated Proj.4 representation: NA 440s 440s > compare.krigingLines(log(zinc)~1, meuse, Sl2, v) 440s [using ordinary kriging] 440s [using ordinary kriging] 440s [1] "difference:" 440s var1.pred var1.var 440s a 0 0 440s > 440s > # two seperate line segments: 440s > Sl3 = SpatialLines(list(Lines(list(Line(pp)), "a"),Lines(list(Line(pp2)),"b"))) 440s > krige(log(zinc)~1, meuse, Sl3, v) 440s [using ordinary kriging] 440s An object of class "SpatialLinesDataFrame" 440s Slot "data": 440s x y var1.pred var1.var 440s a 180333 332167 6.1618 0.008025 440s b 181000 333000 5.7060 0.011043 440s 440s Slot "lines": 440s [[1]] 440s An object of class "Lines" 440s Slot "Lines": 440s [[1]] 440s An object of class "Line" 440s Slot "coords": 440s [,1] [,2] 440s [1,] 180000 331000 440s [2,] 180000 332000 440s [3,] 181000 333500 440s 440s 440s 440s Slot "ID": 440s [1] "a" 440s 440s 440s [[2]] 440s An object of class "Lines" 440s Slot "Lines": 440s [[1]] 440s An object of class "Line" 440s Slot "coords": 440s [,1] [,2] 440s [1,] 181000 333500 440s [2,] 181000 332500 440s 440s 440s 440s Slot "ID": 440s [1] "b" 440s 440s 440s 440s Slot "bbox": 440s min max 440s x 180000 181000 440s y 331000 333500 440s 440s Slot "proj4string": 440s Coordinate Reference System: 440s Deprecated Proj.4 representation: NA 440s 440s > 440s BEGIN TEST merge.R 440s 440s R version 4.4.3 (2025-02-28) -- "Trophy Case" 440s Copyright (C) 2025 The R Foundation for Statistical Computing 440s Platform: arm-unknown-linux-gnueabihf (32-bit) 440s 440s R is free software and comes with ABSOLUTELY NO WARRANTY. 440s You are welcome to redistribute it under certain conditions. 440s Type 'license()' or 'licence()' for distribution details. 440s 440s R is a collaborative project with many contributors. 440s Type 'contributors()' for more information and 440s 'citation()' on how to cite R or R packages in publications. 440s 440s Type 'demo()' for some demos, 'help()' for on-line help, or 440s 'help.start()' for an HTML browser interface to help. 440s Type 'q()' to quit R. 440s 441s > options(digits=6) 441s > # illustrates the use of merge, for merging parameters accross variables: 441s > # Z1=m+e1(s) 441s > # Z2=m+e2(s) 441s > # Z1 and Z2 each have a different variogram, but share the parameter m 441s > # see documentation of gstat() function 441s > library(gstat) 441s > d1 = data.frame(x=c(0,2),y=c(0,0),z=c(0,1)) 441s > d2 = data.frame(x=c(0,2),y=c(2,2),z=c(4,5)) 441s > g = gstat(NULL,"d1", z~1,~x+y,d1,model=vgm(1, "Exp", 1)) 441s > g = gstat(g,"d2", z~1,~x+y,d2,model=vgm(1, "Exp", 1), merge=c("d1","d2")) 441s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 441s > predict(g, data.frame(x=1,y=1), debug = 32) 441s Intrinsic Correlation found. Good. 441s [using ordinary cokriging] 441s we're at location X: 1 Y: 1 Z: 0 441s zero block size 441s we're at point X: 1 Y: 1 Z: 0 441s 441s # X: 441s #Matrix: 4 by 1 441s rbind( 441s c( 1.000000), # row 1 441s c( 1.000000), # row 2 441s c( 1.000000), # row 3 441s c( 1.000000) # row 4 441s ) 441s [using generalized covariances: max_val - semivariance()] 441s # Covariances (x_i, x_j) matrix C (upper triangle): 441s #Matrix: 4 by 4 441s rbind( 441s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 441s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 441s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 441s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 441s ) 441s 441s # glm->C, Choleski decomposed:: 441s #Matrix: 4 by 4 441s rbind( 441s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 441s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 441s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 441s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 441s ) 441s 441s # X'C-1 X: 441s #Matrix: 1 by 1 441s rbind( 441s c( 3.245289) # row 1 441s ) 441s 441s # beta: 441s #Vector: dim: 1 441s c( 2.500000) 441s # Cov(beta), (X'C-1 X)-1: 441s #Matrix: 1 by 1 441s rbind( 441s c( 0.308139) # row 1 441s ) 441s 441s # Corr(beta): 441s #Matrix: 1 by 1 441s rbind( 441s c( 1.000000) # row 1 441s ) 441s 441s # X0 (X values at prediction location x0): 441s #Matrix: 1 by 2 441s rbind( 441s c( 1.000000, 1.000000) # row 1 441s ) 441s 441s # BLUE(mu), E(y(x0)) = X0'beta: 441s #Vector: dim: 2 441s c( 2.500000, 2.500000) 441s # Covariances (x_i, x_0), C0: 441s #Matrix: 4 by 2 441s rbind( 441s c( 0.243117, 0.121558), # row 1 441s c( 0.243117, 0.121558), # row 2 441s c( 0.121558, 0.243117), # row 3 441s c( 0.121558, 0.243117) # row 4 441s ) 441s 441s # C-1 C0: 441s #Matrix: 4 by 2 441s rbind( 441s c( 0.206482, 0.089387), # row 1 441s c( 0.206482, 0.089387), # row 2 441s c( 0.089387, 0.206482), # row 3 441s c( 0.089387, 0.206482) # row 4 441s ) 441s 441s # [a] Cov_ij(B,B) or Cov_ij(0,0): 441s #Matrix: 2 by 2 441s rbind( 441s c( 1.000000, 0.500000), # row 1 441s c( 0.500000, 1.000000) # row 2 441s ) 441s 441s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 441s #Matrix: 2 by 2 441s rbind( 441s c( 0.051360, 0.051360), # row 1 441s c( 0.051360, 0.051360) # row 2 441s ) 441s 441s # [b] c0'C-1 c0: 441s #Matrix: 2 by 2 441s rbind( 441s c( 0.122130, 0.093662), # row 1 441s c( 0.093662, 0.122130) # row 2 441s ) 441s 441s # Best Linear Unbiased Predictor: 441s #Vector: dim: 2 441s c( 2.031619, 2.968381) 441s # MSPE ([a]-[b]+[c]): 441s #Matrix: 2 by 2 441s rbind( 441s c( 0.929230, 0.457698), # row 1 441s c( 0.457698, 0.929230) # row 2 441s ) 441s 441s # kriging weights: 441s #Matrix: 4 by 2 441s rbind( 441s c( 0.308548, 0.191452), # row 1 441s c( 0.308548, 0.191452), # row 2 441s c( 0.191452, 0.308548), # row 3 441s c( 0.191452, 0.308548) # row 4 441s ) 441s 441s 441s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 441s 1 1 1 2.03162 0.92923 2.96838 0.92923 0.457698 441s > 441s > # Z1 and Z2 share a regression slope: 441s > g = gstat(NULL,"d1", z~x,~x+y,d1,model=vgm(1, "Exp", 1)) 441s > g = gstat(g,"d2", z~x,~x+y,d2,model=vgm(1, "Exp", 1), 441s + merge=list(c("d1",2,"d2",2))) 441s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 441s > predict(g, data.frame(x=1,y=1), debug = 32) 441s Intrinsic Correlation found. Good. 441s [using universal cokriging] 441s we're at location X: 1 Y: 1 Z: 0 441s zero block size 441s we're at point X: 1 Y: 1 Z: 0 441s 441s # X: 441s #Matrix: 4 by 3 441s rbind( 441s c( 1.000000, 0.000000, 0.000000), # row 1 441s c( 1.000000, 2.000000, 0.000000), # row 2 441s c( 0.000000, 0.000000, 1.000000), # row 3 441s c( 0.000000, 2.000000, 1.000000) # row 4 441s ) 441s [using generalized covariances: max_val - semivariance()] 441s # Covariances (x_i, x_j) matrix C (upper triangle): 441s #Matrix: 4 by 4 441s rbind( 441s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 441s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 441s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 441s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 441s ) 441s 441s # glm->C, Choleski decomposed:: 441s #Matrix: 4 by 4 441s rbind( 441s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 441s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 441s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 441s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 441s ) 441s 441s # X'C-1 X: 441s #Matrix: 3 by 3 441s rbind( 441s c( 1.774607, 1.622645, -0.151962), # row 1 441s c( 1.622645, 7.676050, 1.622645), # row 2 441s c(-0.151962, 1.622645, 1.774607) # row 3 441s ) 441s 441s # beta: 441s #Vector: dim: 3 441s c( 0.000000, 0.500000, 4.000000) 441s # Cov(beta), (X'C-1 X)-1: 441s #Matrix: 3 by 3 441s rbind( 441s c( 0.793363, -0.225695, 0.274305), # row 1 441s c(-0.225695, 0.225695, -0.225695), # row 2 441s c( 0.274305, -0.225695, 0.793363) # row 3 441s ) 441s 441s # Corr(beta): 441s #Matrix: 3 by 3 441s rbind( 441s c( 1.000000, -0.533366, 0.345750), # row 1 441s c(-0.533366, 1.000000, -0.533366), # row 2 441s c( 0.345750, -0.533366, 1.000000) # row 3 441s ) 441s 441s # X0 (X values at prediction location x0): 441s #Matrix: 3 by 2 441s rbind( 441s c( 1.000000, 0.000000), # row 1 441s c( 1.000000, 1.000000), # row 2 441s c( 0.000000, 1.000000) # row 3 441s ) 441s 441s # BLUE(mu), E(y(x0)) = X0'beta: 441s #Vector: dim: 2 441s c( 0.500000, 4.500000) 441s # Covariances (x_i, x_0), C0: 441s #Matrix: 4 by 2 441s rbind( 441s c( 0.243117, 0.121558), # row 1 441s c( 0.243117, 0.121558), # row 2 441s c( 0.121558, 0.243117), # row 3 441s c( 0.121558, 0.243117) # row 4 441s ) 441s 441s # C-1 C0: 441s #Matrix: 4 by 2 441s rbind( 441s c( 0.206482, 0.089387), # row 1 441s c( 0.206482, 0.089387), # row 2 441s c( 0.089387, 0.206482), # row 3 441s c( 0.089387, 0.206482) # row 4 441s ) 441s 441s # [a] Cov_ij(B,B) or Cov_ij(0,0): 441s #Matrix: 2 by 2 441s rbind( 441s c( 1.000000, 0.500000), # row 1 441s c( 0.500000, 1.000000) # row 2 441s ) 441s 441s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 441s #Matrix: 2 by 2 441s rbind( 441s c( 0.203564, -0.100844), # row 1 441s c(-0.100844, 0.203564) # row 2 441s ) 441s 441s # [b] c0'C-1 c0: 441s #Matrix: 2 by 2 441s rbind( 441s c( 0.122130, 0.093662), # row 1 441s c( 0.093662, 0.122130) # row 2 441s ) 441s 441s # Best Linear Unbiased Predictor: 441s #Vector: dim: 2 441s c( 0.500000, 4.500000) 441s # MSPE ([a]-[b]+[c]): 441s #Matrix: 2 by 2 441s rbind( 441s c( 1.081434, 0.305494), # row 1 441s c( 0.305494, 1.081434) # row 2 441s ) 441s 441s # kriging weights: 441s #Matrix: 4 by 2 441s rbind( 441s c( 0.500000, 0.000000), # row 1 441s c( 0.500000, 0.000000), # row 2 441s c( 0.000000, 0.500000), # row 3 441s c( 0.000000, 0.500000) # row 4 441s ) 441s 441s 441s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 441s 1 1 1 0.5 1.08143 4.5 1.08143 0.305494 441s > 441s BEGIN TEST na.action.R 441s 441s R version 4.4.3 (2025-02-28) -- "Trophy Case" 441s Copyright (C) 2025 The R Foundation for Statistical Computing 441s Platform: arm-unknown-linux-gnueabihf (32-bit) 441s 441s R is free software and comes with ABSOLUTELY NO WARRANTY. 441s You are welcome to redistribute it under certain conditions. 441s Type 'license()' or 'licence()' for distribution details. 441s 441s R is a collaborative project with many contributors. 441s Type 'contributors()' for more information and 441s 'citation()' on how to cite R or R packages in publications. 441s 441s Type 'demo()' for some demos, 'help()' for on-line help, or 441s 'help.start()' for an HTML browser interface to help. 441s Type 'q()' to quit R. 441s 441s > library(sp) 442s > 442s > data(meuse) 442s > data(meuse.grid) 442s > 442s > set.seed(13131) # reproduce results 442s > 442s > # select 10 random rows; 442s > # create two missing values in the coordinates: 442s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 442s > m[c(2,8), "x"] = NA 442s > 442s > library(gstat) 442s > ## this is not allowed anymore: 442s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.pass)) 442s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.omit)) 442s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 442s missing values in object 442s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.exclude)) 442s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 442s missing values in object 442s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.fail)) 442s > 442s > # select 10 random rows; 442s > # create two missing values in the regressor variable: 442s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 442s > m[c(3,7), "dist"] = NA 442s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 442s missing values in object 442s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.pass) 442s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 442s missing values in object 442s [ordinary or weighted least squares prediction] 442s x y var1.pred var1.var 442s 1 178860 330860 6.530134 0.2415196 442s 2 180260 331860 5.389567 0.2406041 442s 3 180100 331860 NA NA 442s 4 180460 331820 5.213370 0.2417197 442s 5 179660 330580 5.550859 0.2398778 442s 6 179740 330300 6.108648 0.2395392 442s 7 180220 330660 NA NA 442s 8 178580 329820 6.533801 0.2415453 442s 9 180100 331900 5.580264 0.2397758 442s 10 180780 331900 5.095967 0.2426499 442s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.omit) 442s [ordinary or weighted least squares prediction] 442s x y var1.pred var1.var 442s 1877 178860 330860 6.530134 0.2415196 442s 1015 180260 331860 5.389567 0.2406041 442s 1056 180460 331820 5.213370 0.2417197 442s 2199 179660 330580 5.550859 0.2398778 442s 2556 179740 330300 6.108648 0.2395392 442s 2985 178580 329820 6.533801 0.2415453 442s 975 180100 331900 5.580264 0.2397758 442s 992 180780 331900 5.095967 0.2426499 442s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.exclude) 442s [ordinary or weighted least squares prediction] 442s x y var1.pred var1.var 442s 1877 178860 330860 6.530134 0.2415196 442s 1015 180260 331860 5.389567 0.2406041 442s 1056 180460 331820 5.213370 0.2417197 442s 2199 179660 330580 5.550859 0.2398778 442s 2556 179740 330300 6.108648 0.2395392 442s 2985 178580 329820 6.533801 0.2415453 442s 975 180100 331900 5.580264 0.2397758 442s 992 180780 331900 5.095967 0.2426499 442s > try(krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.fail)) 442s > 442s Error in na.fail.default(structure(list(dist = c(0.00135803, 0.423804, : 442s missing values in object 442s BEGIN TEST rings.R 442s 442s R version 4.4.3 (2025-02-28) -- "Trophy Case" 442s Copyright (C) 2025 The R Foundation for Statistical Computing 442s Platform: arm-unknown-linux-gnueabihf (32-bit) 442s 442s R is free software and comes with ABSOLUTELY NO WARRANTY. 442s You are welcome to redistribute it under certain conditions. 442s Type 'license()' or 'licence()' for distribution details. 442s 442s R is a collaborative project with many contributors. 442s Type 'contributors()' for more information and 442s 'citation()' on how to cite R or R packages in publications. 442s 442s Type 'demo()' for some demos, 'help()' for on-line help, or 442s 'help.start()' for an HTML browser interface to help. 442s Type 'q()' to quit R. 442s 442s > library(sp) 443s > library(gstat) 443s > set.seed(13331) 443s > 443s > x = runif(10) 443s > y = runif(10) 443s > z = rnorm(10) 443s > d = data.frame(x=x,y=y,z=z) 443s > bl = c(1,1) 443s > 443s > nd = data.frame(x=.5, y=.5) 443s > 443s > # single block: 443s > library(sp) 443s > coordinates(d) = ~x+y 443s > nd = SpatialPoints(nd) 443s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 443s + set = list(nb=4)) 443s [using ordinary kriging] 443s > 443s > ring = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 443s > r1 = SpatialPolygons(list(Polygons(list(Polygon(ring)), ID = "xx"))) 443s > a = data.frame(a = 1, b = 2) 443s > rownames(a) = "xx" 443s > r1df = SpatialPolygonsDataFrame(r1, a) 443s > 443s > g = gstat(formula=z~1, data=d, model=vgm(1, "Exp", 1)) 443s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 443s > yy = predict(g, r1df, block = bl, sps.args = args) 443s [using ordinary kriging] 443s > 443s > xx = as.data.frame(xx) 443s > yy = as.data.frame(yy) 443s > row.names(xx) = row.names(yy) 443s > print(all.equal(xx,yy)) 443s [1] TRUE 443s > 443s > ## multiple blocks of equal size: 443s > nd = data.frame(x= 0:4 + .5, y=rep(.5,5)) 443s > nd = SpatialPoints(nd) 443s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 443s + set = list(nb=4)) 443s [using ordinary kriging] 443s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 443s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 443s > ring2 = cbind(c(2+0,2+bl[1],2+bl[1],2+0,2+0), c(0,0,bl[2],bl[2],0)) 443s > ring3 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 443s > ring4 = cbind(c(4+0,4+bl[1],4+bl[1],4+0,4+0), c(0,0,bl[2],bl[2],0)) 443s > r1 = SpatialPolygons(list( 443s + Polygons(list(Polygon(ring0)), ID = "x0"), 443s + Polygons(list(Polygon(ring1)), ID = "x1"), 443s + Polygons(list(Polygon(ring2)), ID = "x2"), 443s + Polygons(list(Polygon(ring3)), ID = "x3"), 443s + Polygons(list(Polygon(ring4)), ID = "x4") 443s + )) 443s > df = data.frame(a=rep(1,5), b= rep(1,5)) 443s > rownames(df) = c("x0", "x1", "x2", "x3", "x4") 443s > r1df = SpatialPolygonsDataFrame(r1, df) 443s > 443s > yy = predict(g, r1, block = bl, sps.args = args) 443s [using ordinary kriging] 443s > xx = as.data.frame(xx) 443s > yy = as.data.frame(yy) 443s > row.names(xx) = row.names(yy) 443s > all.equal(xx, yy) 443s [1] TRUE 443s > 443s > ## multiple blocks of equal size: 443s > args = list(type = "regular", cellsize=.25, offset=c(0.5,0.5), n=16) 443s > yy = predict(g, r1, block = bl, sps.args = args) 443s [using ordinary kriging] 443s > xx = as.data.frame(xx) 443s > yy = as.data.frame(yy) 443s > row.names(xx) = row.names(yy) 443s > print(all.equal(xx, yy)) 443s [1] TRUE 443s > 443s > ## multiple blocks of varying size: 443s > nd = data.frame(x=c(0.5, 2, 4.5), y=c(0.5, 1, 1.5)) 443s > nd = SpatialPoints(nd) 443s > bl = c(1,1) 443s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 443s > xx1 = krige(z~1, d, nd[1], model=vgm(1, "Exp", 1), block = bl, 443s + set = list(nb=4)) 443s [using ordinary kriging] 443s > bl = c(2,2) 443s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 443s > xx2 = krige(z~1, d, nd[2], model=vgm(1, "Exp", 1), block = bl, 443s + set = list(nb=4)) 443s [using ordinary kriging] 443s > bl = c(3,3) 443s > ring2 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 443s > xx3 = krige(z~1, d, nd[3], model=vgm(1, "Exp", 1), block = bl, 443s + set = list(nb=4)) 443s [using ordinary kriging] 443s > r1 = SpatialPolygons(list( 443s + Polygons(list(Polygon(ring0)), ID = "x0"), 443s + Polygons(list(Polygon(ring1)), ID = "x1"), 443s + Polygons(list(Polygon(ring2)), ID = "x2") 443s + )) 443s > df = data.frame(a = rep(1,3), b = rep(1,3)) 443s > rownames(df) = c("x0", "x1", "x2") 443s > r1df = SpatialPolygonsDataFrame(r1, df) 443s > 443s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 443s > yy = predict(g, r1df, block = bl, sps.args = args) 443s [using ordinary kriging] 443s > xx = rbind(as.data.frame(xx1), as.data.frame(xx2), as.data.frame(xx3)) 443s > row.names(xx) = 1:3 443s > xx = as.data.frame(xx) 443s > yy = as.data.frame(yy) 443s > row.names(xx) = row.names(yy) 443s > print(all.equal(xx, yy)) 443s [1] TRUE 443s > 443s BEGIN TEST sim.R 443s 443s R version 4.4.3 (2025-02-28) -- "Trophy Case" 443s Copyright (C) 2025 The R Foundation for Statistical Computing 443s Platform: arm-unknown-linux-gnueabihf (32-bit) 443s 443s R is free software and comes with ABSOLUTELY NO WARRANTY. 443s You are welcome to redistribute it under certain conditions. 443s Type 'license()' or 'licence()' for distribution details. 443s 443s R is a collaborative project with many contributors. 443s Type 'contributors()' for more information and 443s 'citation()' on how to cite R or R packages in publications. 443s 443s Type 'demo()' for some demos, 'help()' for on-line help, or 443s 'help.start()' for an HTML browser interface to help. 443s Type 'q()' to quit R. 443s 444s > options(digits=6) 444s > library(sp) 444s > data(meuse) 444s > set.seed(158229572) 444s > new.locs <- data.frame(x = c(181170, 180310, 180205, 178673, 178770, 178270), 444s + y = c(333250, 332189, 331707, 330066, 330675, 331075)) 444s > library(gstat) 444s > krige(zinc ~ 1, ~ x + y, meuse, newdata = new.locs, 444s + model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 444s + block = c(40,40), nmax = 40, nsim = 10) 444s drawing 10 GLS realisations of beta... 444s [using conditional Gaussian simulation] 444s x y sim1 sim2 sim3 sim4 sim5 sim6 sim7 444s 1 181170 333250 267.385 27.5686 428.144 381.576 151.119 175.890 293.273 444s 2 180310 332189 429.437 659.6579 564.023 611.666 612.756 619.791 771.961 444s 3 180205 331707 205.978 412.7276 271.827 380.349 169.488 369.822 266.026 444s 4 178673 330066 117.479 684.0663 399.148 585.096 606.396 867.866 807.634 444s 5 178770 330675 780.072 837.4628 682.690 911.052 600.984 783.019 749.476 444s 6 178270 331075 1025.778 1582.0269 614.235 332.377 660.228 589.447 972.018 444s sim8 sim9 sim10 444s 1 294.107 113.347 279.991 444s 2 776.498 724.160 901.692 444s 3 338.021 630.244 140.272 444s 4 127.301 957.242 444.007 444s 5 533.773 748.144 623.960 444s 6 1084.170 537.604 -214.972 444s > 444s BEGIN TEST stars.R 444s 444s R version 4.4.3 (2025-02-28) -- "Trophy Case" 444s Copyright (C) 2025 The R Foundation for Statistical Computing 444s Platform: arm-unknown-linux-gnueabihf (32-bit) 444s 444s R is free software and comes with ABSOLUTELY NO WARRANTY. 444s You are welcome to redistribute it under certain conditions. 444s Type 'license()' or 'licence()' for distribution details. 444s 444s R is a collaborative project with many contributors. 444s Type 'contributors()' for more information and 444s 'citation()' on how to cite R or R packages in publications. 444s 444s Type 'demo()' for some demos, 'help()' for on-line help, or 444s 'help.start()' for an HTML browser interface to help. 444s Type 'q()' to quit R. 444s 444s > Sys.setenv(TZ = "UTC") 444s > 444s > # 0. using sp: 444s > 444s > suppressPackageStartupMessages(library(sp)) 445s > demo(meuse, ask = FALSE) 445s 445s 445s demo(meuse) 445s ---- ~~~~~ 445s 445s > require(sp) 445s 445s > crs = CRS("EPSG:28992") 445s 445s > data("meuse") 445s 445s > coordinates(meuse) <- ~x+y 445s 445s > proj4string(meuse) <- crs 445s 445s > data("meuse.grid") 445s 445s > coordinates(meuse.grid) <- ~x+y 445s 445s > gridded(meuse.grid) <- TRUE 445s 445s > proj4string(meuse.grid) <- crs 445s 445s > data("meuse.riv") 445s 445s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 445s 445s > proj4string(meuse.riv) <- crs 445s 445s > data("meuse.area") 445s 445s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 445s 445s > proj4string(meuse.area) <- crs 445s > suppressPackageStartupMessages(library(gstat)) 446s > v = variogram(log(zinc)~1, meuse) 446s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 446s model psill range 446s 1 Nug 0.05066243 0.0000 446s 2 Sph 0.59060780 897.0209 446s > k_sp = krige(log(zinc)~1, meuse[-(1:5),], meuse[1:5,], v.fit) 446s [using ordinary kriging] 446s > k_sp_grd = krige(log(zinc)~1, meuse, meuse.grid, v.fit) 446s [using ordinary kriging] 446s > 446s > # 1. using sf: 446s > suppressPackageStartupMessages(library(sf)) 446s > demo(meuse_sf, ask = FALSE, echo = FALSE) 446s > # reloads meuse as data.frame, so 446s > demo(meuse, ask = FALSE) 446s 446s 446s demo(meuse) 446s ---- ~~~~~ 446s 446s > require(sp) 446s 446s > crs = CRS("EPSG:28992") 446s 446s > data("meuse") 446s 446s > coordinates(meuse) <- ~x+y 446s 446s > proj4string(meuse) <- crs 446s 446s > data("meuse.grid") 446s 446s > coordinates(meuse.grid) <- ~x+y 446s 446s > gridded(meuse.grid) <- TRUE 446s 446s > proj4string(meuse.grid) <- crs 446s 446s > data("meuse.riv") 446s 446s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 446s 446s > proj4string(meuse.riv) <- crs 446s 446s > data("meuse.area") 446s 446s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 446s 446s > proj4string(meuse.area) <- crs 446s > 446s > v = variogram(log(zinc)~1, meuse_sf) 446s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 446s model psill range 446s 1 Nug 0.05066243 0.0000 446s 2 Sph 0.59060780 897.0209 446s > k_sf = krige(log(zinc)~1, meuse_sf[-(1:5),], meuse_sf[1:5,], v.fit) 447s [using ordinary kriging] 447s > 447s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = FALSE) 447s [1] TRUE 447s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = TRUE) 447s [1] "Attributes: < Component “bbox”: Attributes: < Component “dimnames”: Component 1: 2 string mismatches > >" 447s [2] "Attributes: < Component “coords”: Attributes: < Component “dimnames”: Component 2: 2 string mismatches > >" 447s [3] "Attributes: < Component “coords.nrs”: Numeric: lengths (2, 0) differ >" 447s > 447s > # 2. using stars for grid: 447s > 447s > suppressPackageStartupMessages(library(stars)) 447s > st = st_as_stars(meuse.grid) 447s > st_crs(st) 447s Coordinate Reference System: 447s User input: Amersfoort / RD New 447s wkt: 447s PROJCRS["Amersfoort / RD New", 447s BASEGEOGCRS["Amersfoort", 447s DATUM["Amersfoort", 447s ELLIPSOID["Bessel 1841",6377397.155,299.1528128, 447s LENGTHUNIT["metre",1]]], 447s PRIMEM["Greenwich",0, 447s ANGLEUNIT["degree",0.0174532925199433]], 447s ID["EPSG",4289]], 447s CONVERSION["RD New", 447s METHOD["Oblique Stereographic", 447s ID["EPSG",9809]], 447s PARAMETER["Latitude of natural origin",52.1561605555556, 447s ANGLEUNIT["degree",0.0174532925199433], 447s ID["EPSG",8801]], 447s PARAMETER["Longitude of natural origin",5.38763888888889, 447s ANGLEUNIT["degree",0.0174532925199433], 447s ID["EPSG",8802]], 447s PARAMETER["Scale factor at natural origin",0.9999079, 447s SCALEUNIT["unity",1], 447s ID["EPSG",8805]], 447s PARAMETER["False easting",155000, 447s LENGTHUNIT["metre",1], 447s ID["EPSG",8806]], 447s PARAMETER["False northing",463000, 447s LENGTHUNIT["metre",1], 447s ID["EPSG",8807]]], 447s CS[Cartesian,2], 447s AXIS["easting (X)",east, 447s ORDER[1], 447s LENGTHUNIT["metre",1]], 447s AXIS["northing (Y)",north, 447s ORDER[2], 447s LENGTHUNIT["metre",1]], 447s USAGE[ 447s SCOPE["Engineering survey, topographic mapping."], 447s AREA["Netherlands - onshore, including Waddenzee, Dutch Wadden Islands and 12-mile offshore coastal zone."], 447s BBOX[50.75,3.2,53.7,7.22]], 447s ID["EPSG",28992]] 447s > 447s > # compare inputs: 447s > sp = as(st, "Spatial") 447s > fullgrid(meuse.grid) = TRUE 447s > all.equal(sp, meuse.grid["dist"], check.attributes = FALSE) 447s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 447s [2] "Names: 1 string mismatch" 447s > all.equal(sp, meuse.grid["dist"], check.attributes = TRUE, use.names = FALSE) 447s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 447s [2] "Names: 1 string mismatch" 447s [3] "Attributes: < Component 3: Names: 1 string mismatch >" 447s [4] "Attributes: < Component 3: Length mismatch: comparison on first 1 components >" 447s [5] "Attributes: < Component 3: Component 1: Mean relative difference: 1.08298 >" 447s [6] "Attributes: < Component 4: Attributes: < Component 2: names for current but not for target > >" 447s [7] "Attributes: < Component 4: Attributes: < Component 3: names for current but not for target > >" 447s > 447s > # kriging: 447s > st_crs(st) = st_crs(meuse_sf) = NA # GDAL roundtrip messes them up! 447s > k_st = if (Sys.getenv("USER") == "travis") { 447s + try(krige(log(zinc)~1, meuse_sf, st, v.fit)) 447s + } else { 447s + krige(log(zinc)~1, meuse_sf, st, v.fit) 447s + } 447s [using ordinary kriging] 447s > k_st 447s stars object with 2 dimensions and 2 attributes 447s attribute(s): 447s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 447s var1.pred 4.7765547 5.2376293 5.5728839 5.7072287 6.1717619 7.4399911 5009 447s var1.var 0.0854949 0.1372864 0.1621838 0.1853319 0.2116152 0.5002756 5009 447s dimension(s): 447s from to offset delta x/y 447s x 1 78 178440 40 [x] 447s y 1 104 333760 -40 [y] 447s > 447s > # handle factors, when going to stars? 447s > k_sp_grd$cls = cut(k_sp_grd$var1.pred, c(0, 5, 6, 7, 8, 9)) 447s > st_as_stars(k_sp_grd) 447s stars object with 2 dimensions and 3 attributes 447s attribute(s): 447s var1.pred var1.var cls 447s Min. :4.777 Min. :0.085 (0,5]: 316 447s 1st Qu.:5.238 1st Qu.:0.137 (5,6]:1778 447s Median :5.573 Median :0.162 (6,7]: 962 447s Mean :5.707 Mean :0.185 (7,8]: 47 447s 3rd Qu.:6.172 3rd Qu.:0.212 (8,9]: 0 447s Max. :7.440 Max. :0.500 NA's :5009 447s NA's :5009 NA's :5009 447s dimension(s): 447s from to offset delta refsys x/y 447s x 1 78 178440 40 Amersfoort / RD New [x] 447s y 1 104 333760 -40 Amersfoort / RD New [y] 447s > if (require(raster, quietly = TRUE)) { 447s + print(st_as_stars(raster::stack(k_sp_grd))) # check 447s + print(all.equal(st_redimension(st_as_stars(k_sp_grd)), st_as_stars(raster::stack(k_sp_grd)), check.attributes=FALSE)) 447s + } 453s stars object with 3 dimensions and 1 attribute 453s attribute(s): 453s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 453s var1.pred 0.0854949 0.2116778 2 2.710347 5.237542 7.439991 15027 453s dimension(s): 453s from to offset delta refsys values 453s x 1 78 178440 40 Amersfoort / RD New NULL 453s y 1 104 333760 -40 Amersfoort / RD New NULL 453s band 1 3 NA NA NA var1.pred, var1.var , cls 453s x/y 453s x [x] 453s y [y] 453s band 453s [1] TRUE 453s > 453s > suppressPackageStartupMessages(library(spacetime)) 453s > 453s > tm = as.POSIXct("2019-02-25 15:37:24 CET") 453s > n = 4 453s > s = stars:::st_stars(list(foo = array(1:(n^3), rep(n,3))), 453s + stars:::create_dimensions(list( 453s + x = stars:::create_dimension(from = 1, to = n, offset = 10, delta = 0.5), 453s + y = stars:::create_dimension(from = 1, to = n, offset = 0, delta = -0.7), 453s + time = stars:::create_dimension(values = tm + 1:n)), 453s + raster = stars:::get_raster(dimensions = c("x", "y"))) 453s + ) 453s > s 453s stars object with 3 dimensions and 1 attribute 453s attribute(s): 453s Min. 1st Qu. Median Mean 3rd Qu. Max. 453s foo 1 16.75 32.5 32.5 48.25 64 453s dimension(s): 453s from to offset delta refsys x/y 453s x 1 4 10 0.5 NA [x] 453s y 1 4 0 -0.7 NA [y] 453s time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct 453s > 453s > as.data.frame(s) 453s x y time foo 453s 1 10.25 -0.35 2019-02-25 15:37:25 1 453s 2 10.75 -0.35 2019-02-25 15:37:25 2 453s 3 11.25 -0.35 2019-02-25 15:37:25 3 453s 4 11.75 -0.35 2019-02-25 15:37:25 4 453s 5 10.25 -1.05 2019-02-25 15:37:25 5 453s 6 10.75 -1.05 2019-02-25 15:37:25 6 453s 7 11.25 -1.05 2019-02-25 15:37:25 7 453s 8 11.75 -1.05 2019-02-25 15:37:25 8 453s 9 10.25 -1.75 2019-02-25 15:37:25 9 453s 10 10.75 -1.75 2019-02-25 15:37:25 10 453s 11 11.25 -1.75 2019-02-25 15:37:25 11 453s 12 11.75 -1.75 2019-02-25 15:37:25 12 453s 13 10.25 -2.45 2019-02-25 15:37:25 13 453s 14 10.75 -2.45 2019-02-25 15:37:25 14 453s 15 11.25 -2.45 2019-02-25 15:37:25 15 453s 16 11.75 -2.45 2019-02-25 15:37:25 16 453s 17 10.25 -0.35 2019-02-25 15:37:26 17 453s 18 10.75 -0.35 2019-02-25 15:37:26 18 453s 19 11.25 -0.35 2019-02-25 15:37:26 19 453s 20 11.75 -0.35 2019-02-25 15:37:26 20 453s 21 10.25 -1.05 2019-02-25 15:37:26 21 453s 22 10.75 -1.05 2019-02-25 15:37:26 22 453s 23 11.25 -1.05 2019-02-25 15:37:26 23 453s 24 11.75 -1.05 2019-02-25 15:37:26 24 453s 25 10.25 -1.75 2019-02-25 15:37:26 25 453s 26 10.75 -1.75 2019-02-25 15:37:26 26 453s 27 11.25 -1.75 2019-02-25 15:37:26 27 453s 28 11.75 -1.75 2019-02-25 15:37:26 28 453s 29 10.25 -2.45 2019-02-25 15:37:26 29 453s 30 10.75 -2.45 2019-02-25 15:37:26 30 453s 31 11.25 -2.45 2019-02-25 15:37:26 31 453s 32 11.75 -2.45 2019-02-25 15:37:26 32 453s 33 10.25 -0.35 2019-02-25 15:37:27 33 453s 34 10.75 -0.35 2019-02-25 15:37:27 34 453s 35 11.25 -0.35 2019-02-25 15:37:27 35 453s 36 11.75 -0.35 2019-02-25 15:37:27 36 453s 37 10.25 -1.05 2019-02-25 15:37:27 37 453s 38 10.75 -1.05 2019-02-25 15:37:27 38 453s 39 11.25 -1.05 2019-02-25 15:37:27 39 453s 40 11.75 -1.05 2019-02-25 15:37:27 40 453s 41 10.25 -1.75 2019-02-25 15:37:27 41 453s 42 10.75 -1.75 2019-02-25 15:37:27 42 453s 43 11.25 -1.75 2019-02-25 15:37:27 43 453s 44 11.75 -1.75 2019-02-25 15:37:27 44 453s 45 10.25 -2.45 2019-02-25 15:37:27 45 453s 46 10.75 -2.45 2019-02-25 15:37:27 46 453s 47 11.25 -2.45 2019-02-25 15:37:27 47 453s 48 11.75 -2.45 2019-02-25 15:37:27 48 453s 49 10.25 -0.35 2019-02-25 15:37:28 49 453s 50 10.75 -0.35 2019-02-25 15:37:28 50 453s 51 11.25 -0.35 2019-02-25 15:37:28 51 453s 52 11.75 -0.35 2019-02-25 15:37:28 52 453s 53 10.25 -1.05 2019-02-25 15:37:28 53 453s 54 10.75 -1.05 2019-02-25 15:37:28 54 453s 55 11.25 -1.05 2019-02-25 15:37:28 55 453s 56 11.75 -1.05 2019-02-25 15:37:28 56 453s 57 10.25 -1.75 2019-02-25 15:37:28 57 453s 58 10.75 -1.75 2019-02-25 15:37:28 58 453s 59 11.25 -1.75 2019-02-25 15:37:28 59 453s 60 11.75 -1.75 2019-02-25 15:37:28 60 453s 61 10.25 -2.45 2019-02-25 15:37:28 61 453s 62 10.75 -2.45 2019-02-25 15:37:28 62 453s 63 11.25 -2.45 2019-02-25 15:37:28 63 453s 64 11.75 -2.45 2019-02-25 15:37:28 64 453s > plot(s, col = sf.colors(), axes = TRUE) 453s > (s.stfdf = as(s, "STFDF")) 453s An object of class "STFDF" 453s Slot "data": 453s foo 453s 1 1 453s 2 2 453s 3 3 453s 4 4 453s 5 5 453s 6 6 453s 7 7 453s 8 8 453s 9 9 453s 10 10 453s 11 11 453s 12 12 453s 13 13 453s 14 14 453s 15 15 453s 16 16 453s 17 17 453s 18 18 453s 19 19 453s 20 20 453s 21 21 453s 22 22 453s 23 23 453s 24 24 453s 25 25 453s 26 26 453s 27 27 453s 28 28 453s 29 29 453s 30 30 453s 31 31 453s 32 32 453s 33 33 453s 34 34 453s 35 35 453s 36 36 453s 37 37 453s 38 38 453s 39 39 453s 40 40 453s 41 41 453s 42 42 453s 43 43 453s 44 44 453s 45 45 453s 46 46 453s 47 47 453s 48 48 453s 49 49 453s 50 50 453s 51 51 453s 52 52 453s 53 53 453s 54 54 453s 55 55 453s 56 56 453s 57 57 453s 58 58 453s 59 59 453s 60 60 453s 61 61 453s 62 62 453s 63 63 453s 64 64 453s 453s Slot "sp": 453s Object of class SpatialPixels 453s Grid topology: 453s cellcentre.offset cellsize cells.dim 453s x 10.25 0.5 4 453s y -2.45 0.7 4 453s SpatialPoints: 453s x y 453s [1,] 10.25 -0.35 453s [2,] 10.75 -0.35 453s [3,] 11.25 -0.35 453s [4,] 11.75 -0.35 453s [5,] 10.25 -1.05 453s [6,] 10.75 -1.05 453s [7,] 11.25 -1.05 453s [8,] 11.75 -1.05 453s [9,] 10.25 -1.75 453s [10,] 10.75 -1.75 453s [11,] 11.25 -1.75 453s [12,] 11.75 -1.75 453s [13,] 10.25 -2.45 453s [14,] 10.75 -2.45 453s [15,] 11.25 -2.45 453s [16,] 11.75 -2.45 453s Coordinate Reference System (CRS) arguments: NA 453s 453s Slot "time": 453s timeIndex 453s 2019-02-25 15:37:25 1 453s 2019-02-25 15:37:26 2 453s 2019-02-25 15:37:27 3 453s 2019-02-25 15:37:28 4 453s 453s Slot "endTime": 453s [1] "2019-02-25 15:37:26 UTC" "2019-02-25 15:37:27 UTC" 453s [3] "2019-02-25 15:37:28 UTC" "2019-02-25 15:37:29 UTC" 453s 453s > stplot(s.stfdf, scales = list(draw = TRUE)) 454s > 454s > (s2 = st_as_stars(s.stfdf)) 454s stars object with 3 dimensions and 1 attribute 454s attribute(s): 454s Min. 1st Qu. Median Mean 3rd Qu. Max. 454s foo 1 16.75 32.5 32.5 48.25 64 454s dimension(s): 454s from to offset delta refsys x/y 454s x 1 4 10 0.5 NA [x] 454s y 1 4 -1.11e-16 -0.7 NA [y] 454s time 1 4 2019-02-25 15:37:25 UTC 1 secs POSIXct 454s > plot(s2, col = sf.colors(), axes = TRUE) 454s > all.equal(s, s2, check.attributes = FALSE) 454s [1] TRUE 454s > 454s > # multiple simulations: 454s > data(meuse, package = "sp") 454s > data(meuse.grid, package = "sp") 454s > coordinates(meuse.grid) <- ~x+y 454s > gridded(meuse.grid) <- TRUE 454s > meuse.grid = st_as_stars(meuse.grid) 454s > meuse_sf = st_as_sf(meuse, coords = c("x", "y")) 454s > g = gstat(NULL, "zinc", zinc~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10) 454s > g = gstat(g, "lead", lead~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10, fill.cross = TRUE) 454s > set.seed(123) 454s > ## IGNORE_RDIFF_BEGIN 454s > (p = predict(g, meuse.grid, nsim = 5)) 454s drawing 5 multivariate GLS realisations of beta... 454s [using conditional Gaussian simulation] 454s stars object with 3 dimensions and 2 attributes 454s attribute(s): 454s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 454s zinc 101.7643 199.59256 300.2140 399.8017 544.0327 1817.2057 25045 454s lead 32.7799 73.03151 107.9339 133.1725 178.8162 638.9396 25045 454s dimension(s): 454s from to offset delta values x/y 454s x 1 78 178440 40 NULL [x] 454s y 1 104 333760 -40 NULL [y] 454s sample 1 5 NA NA sim1,...,sim5 454s > ## IGNORE_RDIFF_END 454s > 454s BEGIN TEST unproj.R 454s 454s R version 4.4.3 (2025-02-28) -- "Trophy Case" 454s Copyright (C) 2025 The R Foundation for Statistical Computing 454s Platform: arm-unknown-linux-gnueabihf (32-bit) 454s 454s R is free software and comes with ABSOLUTELY NO WARRANTY. 454s You are welcome to redistribute it under certain conditions. 454s Type 'license()' or 'licence()' for distribution details. 454s 454s R is a collaborative project with many contributors. 454s Type 'contributors()' for more information and 454s 'citation()' on how to cite R or R packages in publications. 454s 454s Type 'demo()' for some demos, 'help()' for on-line help, or 454s 'help.start()' for an HTML browser interface to help. 454s Type 'q()' to quit R. 454s 454s > # DOI 10.1007/s11004-011-9344-7 454s > # http://mypage.iu.edu/~srobeson/Pubs/variogram_sphere_mathgeo_2011.pdf 454s > 454s > suppressPackageStartupMessages(library(sp)) 454s > library(gstat) 455s > 455s > if (require(sp, quietly = TRUE) && 455s + suppressPackageStartupMessages(require(fields, quietly = TRUE)) && 455s + suppressPackageStartupMessages(require(sf, quietly = TRUE))) { 455s + data(meuse) 455s + coordinates(meuse) = ~x+y 455s + proj4string(meuse) = CRS("+init=epsg:28992") 455s + ll = "+proj=longlat +ellps=WGS84" 455s + # meuse.ll = spTransform(meuse, CRS("+proj=longlat +ellps=WGS84")) 455s + meuse.ll = as(st_transform(sf::st_as_sf(meuse), sf::st_crs(ll)), "Spatial") 455s + meuse.ll[1:10,] 455s + variogram(log(zinc)~1, meuse.ll) 455s + 455s + cloud1 = variogram(log(zinc)~1, meuse, cloud=T, cutoff=6000) 455s + cloud2 = variogram(log(zinc)~1, meuse.ll, cloud=T, cutoff=6) 455s + 455s + plot(cloud1$dist/1000, cloud2$dist, xlab="Amersfoort, km", ylab = "Long/lat") 455s + abline(0,1) 455s + 455s + data(ozone2) 455s + oz = SpatialPointsDataFrame(ozone2$lon.lat, 455s + data.frame(t(ozone2$y)), 455s + proj4string=CRS("+proj=longlat +ellps=WGS84")) 455s + variogram(X870731~1,oz[!is.na(oz$X870731),]) 455s + utm16 = "+proj=utm +zone=16" 455s + # oz.utm = spTransform(oz, utm16) 455s + oz.utm = as(sf::st_transform(sf::st_as_sf(oz), utm16) , "Spatial") 455s + variogram(X870731~1,oz.utm[!is.na(oz$X870731),]) 455s + 455s + # Timothy Hilton, r-sig-geo, Sept 14, 2008: 455s + 455s + foo <- 455s + structure(list(z = c(-1.95824831109744, -1.9158901643563, 4.22211761150161, 455s + 3.23356929459598, 1.12038389231868, 0.34613850821113, 1.12589932643631, 455s + 23.517912251617, 3.0519158690268, 3.20261431141517, -2.10947106854739 455s + ), lon = c(-125.29228, -82.1556, -98.524722, -99.948333, -104.691741, 455s + -79.420833, -105.100533, -88.291867, -72.171478, -121.556944, 455s + -89.34765), lat = c(49.87217, 48.2167, 55.905833, 56.635833, 455s + 53.916264, 39.063333, 48.307883, 40.0061, 42.537756, 44.448889, 455s + 46.242017)), .Names = c("z", "lon", "lat"), row.names = c(NA, 455s + -11L), class = "data.frame") 455s + 455s + coordinates(foo) <- ~lon+lat 455s + 455s + proj4string(foo) <- CRS('+proj=longlat +ellps=WGS84') 455s + 455s + vg.foo <- variogram(z~1, foo, cloud=TRUE, cutoff=1e10) 455s + 455s + cat('==========\nvariogram:\n') 455s + print(head(vg.foo)) 455s + 455s + cat('==========\nspDistsN1 Distances:\n') 455s + print(spDistsN1(coordinates(foo), coordinates(foo)[1,], longlat=TRUE)) 455s + } 456s ========== 456s variogram: 456s Warning message: 456s In CPL_crs_from_input(x) : 456s GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order. 456s dist gamma dir.hor dir.ver id left right 456s 1 3115.1190 8.971063e-04 0 0 var1 2 1 456s 2 1908.0468 1.909846e+01 0 0 var1 3 1 456s 3 1405.6211 1.883757e+01 0 0 var1 3 2 456s 4 1837.5667 1.347749e+01 0 0 var1 4 1 456s 5 1522.8765 1.325847e+01 0 0 var1 4 2 456s 6 119.9386 4.886139e-01 0 0 var1 4 3 456s ========== 456s spDistsN1 Distances: 456s [1] 0.0000 3115.1190 1908.0468 1837.5667 1481.6293 3775.6751 1480.4477 456s [8] 3081.7541 4090.4022 665.9348 2683.1516 456s > 457s BEGIN TEST variogram.R 457s 457s R version 4.4.3 (2025-02-28) -- "Trophy Case" 457s Copyright (C) 2025 The R Foundation for Statistical Computing 457s Platform: arm-unknown-linux-gnueabihf (32-bit) 457s 457s R is free software and comes with ABSOLUTELY NO WARRANTY. 457s You are welcome to redistribute it under certain conditions. 457s Type 'license()' or 'licence()' for distribution details. 457s 457s R is a collaborative project with many contributors. 457s Type 'contributors()' for more information and 457s 'citation()' on how to cite R or R packages in publications. 457s 457s Type 'demo()' for some demos, 'help()' for on-line help, or 457s 'help.start()' for an HTML browser interface to help. 457s Type 'q()' to quit R. 457s 457s > library(sp) 457s > library(gstat) 457s > data(meuse) 457s > variogram(log(zinc)~1, ~x+y, meuse) 457s np dist gamma dir.hor dir.ver id 457s 1 57 79.29244 0.1234479 0 0 var1 457s 2 299 163.97367 0.2162185 0 0 var1 457s 3 419 267.36483 0.3027859 0 0 var1 457s 4 457 372.73542 0.4121448 0 0 var1 457s 5 547 478.47670 0.4634128 0 0 var1 457s 6 533 585.34058 0.5646933 0 0 var1 457s 7 574 693.14526 0.5689683 0 0 var1 457s 8 564 796.18365 0.6186769 0 0 var1 457s 9 589 903.14650 0.6471479 0 0 var1 457s 10 543 1011.29177 0.6915705 0 0 var1 457s 11 500 1117.86235 0.7033984 0 0 var1 457s 12 477 1221.32810 0.6038770 0 0 var1 457s 13 452 1329.16407 0.6517158 0 0 var1 457s 14 457 1437.25620 0.5665318 0 0 var1 457s 15 415 1543.20248 0.5748227 0 0 var1 457s > 457s > coordinates(meuse) <- ~ x + y 458s > variogram(log(zinc)~1, meuse) 458s np dist gamma dir.hor dir.ver id 458s 1 57 79.29244 0.1234479 0 0 var1 458s 2 299 163.97367 0.2162185 0 0 var1 458s 3 419 267.36483 0.3027859 0 0 var1 458s 4 457 372.73542 0.4121448 0 0 var1 458s 5 547 478.47670 0.4634128 0 0 var1 458s 6 533 585.34058 0.5646933 0 0 var1 458s 7 574 693.14526 0.5689683 0 0 var1 458s 8 564 796.18365 0.6186769 0 0 var1 458s 9 589 903.14650 0.6471479 0 0 var1 458s 10 543 1011.29177 0.6915705 0 0 var1 458s 11 500 1117.86235 0.7033984 0 0 var1 458s 12 477 1221.32810 0.6038770 0 0 var1 458s 13 452 1329.16407 0.6517158 0 0 var1 458s 14 457 1437.25620 0.5665318 0 0 var1 458s 15 415 1543.20248 0.5748227 0 0 var1 458s > 458s > ind=seq(1,155,2) 458s > var1= meuse[ind,] 458s > var2= meuse[-ind,] 458s > g <- gstat(NULL, id = "lead", form = lead ~ 1, data=var1) 458s > g <- gstat(g, id = "zinc", form = zinc ~ 1, data=var2) 458s > v.cross <- variogram(g) 458s > plot(v.cross) 458s > 458s > 458s BEGIN TEST vdist.R 458s 458s R version 4.4.3 (2025-02-28) -- "Trophy Case" 458s Copyright (C) 2025 The R Foundation for Statistical Computing 458s Platform: arm-unknown-linux-gnueabihf (32-bit) 458s 458s R is free software and comes with ABSOLUTELY NO WARRANTY. 458s You are welcome to redistribute it under certain conditions. 458s Type 'license()' or 'licence()' for distribution details. 458s 458s R is a collaborative project with many contributors. 458s Type 'contributors()' for more information and 458s 'citation()' on how to cite R or R packages in publications. 458s 458s Type 'demo()' for some demos, 'help()' for on-line help, or 458s 'help.start()' for an HTML browser interface to help. 458s Type 'q()' to quit R. 458s 458s > library(sp) 458s > library(gstat) 459s > 459s > data(meuse) 459s > coordinates(meuse) = ~x+y 459s > data(meuse.grid) 459s > gridded(meuse.grid) = ~x+y 459s > 459s > mg = meuse.grid 459s > gridded(mg) = FALSE 459s > mg= mg[1500,] 459s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 459s + vdist=FALSE, maxdist=1000, nmax = 9) 459s [using ordinary kriging] 459s coordinates var1.pred var1.var 459s 1500 (180260, 331300) 5.024413 1.114475 459s > 459s > ## IGNORE_RDIFF_BEGIN 459s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 459s + vdist=TRUE, maxdist=1000, nmax = 9) 459s [using ordinary kriging] 459s coordinates var1.pred var1.var 459s 1500 (180260, 331300) 5.568531 1.112945 459s > ## IGNORE_RDIFF_END 459s > 459s autopkgtest [12:42:07]: test run-unit-test: -----------------------] 463s run-unit-test PASS 463s autopkgtest [12:42:11]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 467s autopkgtest [12:42:15]: test pkg-r-autopkgtest: preparing testbed 469s Reading package lists... 469s Building dependency tree... 469s Reading state information... 469s Starting pkgProblemResolver with broken count: 0 469s Starting 2 pkgProblemResolver with broken count: 0 469s Done 470s The following NEW packages will be installed: 470s build-essential cpp cpp-14 cpp-14-arm-linux-gnueabihf 470s cpp-arm-linux-gnueabihf dctrl-tools g++ g++-14 g++-14-arm-linux-gnueabihf 470s g++-arm-linux-gnueabihf gcc gcc-14 gcc-14-arm-linux-gnueabihf 470s gcc-arm-linux-gnueabihf gfortran gfortran-14 gfortran-14-arm-linux-gnueabihf 470s gfortran-arm-linux-gnueabihf icu-devtools libasan8 libblas-dev libbz2-dev 470s libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdeflate-dev libgcc-14-dev 470s libgfortran-14-dev libicu-dev libisl23 libjpeg-dev libjpeg-turbo8-dev 470s libjpeg8-dev liblapack-dev liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 470s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev 470s libreadline-dev libstdc++-14-dev libtirpc-dev libubsan1 linux-libc-dev 470s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev r-cran-backports 470s r-cran-base64url r-cran-batchtools r-cran-brew r-cran-checkmate 470s r-cran-crayon r-cran-data.table r-cran-fs r-cran-future.batchtools 470s r-cran-hms r-cran-prettyunits r-cran-progress r-cran-rappdirs r-cran-stringi 470s rpcsvc-proto zlib1g-dev 470s 0 upgraded, 69 newly installed, 0 to remove and 0 not upgraded. 470s Need to get 83.7 MB of archives. 470s After this operation, 253 MB of additional disk space will be used. 470s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-dev-bin armhf 2.41-1ubuntu2 [23.0 kB] 471s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf linux-libc-dev armhf 6.14.0-10.10 [1683 kB] 472s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libcrypt-dev armhf 1:4.4.38-1 [120 kB] 472s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB] 473s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6-dev armhf 2.41-1ubuntu2 [1396 kB] 474s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libisl23 armhf 0.27-1 [546 kB] 475s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libmpc3 armhf 1.3.1-1build2 [47.1 kB] 475s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [9220 kB] 485s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14 armhf 14.2.0-17ubuntu3 [1030 B] 485s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [5578 B] 485s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf cpp armhf 4:14.2.0-1ubuntu1 [22.4 kB] 485s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libcc1-0 armhf 15-20250222-0ubuntu1 [38.9 kB] 485s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libasan8 armhf 15-20250222-0ubuntu1 [2955 kB] 488s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libubsan1 armhf 15-20250222-0ubuntu1 [1191 kB] 489s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-14-dev armhf 14.2.0-17ubuntu3 [897 kB] 490s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf 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Selecting previously unselected package libubsan1:armhf. 560s Preparing to unpack .../13-libubsan1_15-20250222-0ubuntu1_armhf.deb ... 560s Unpacking libubsan1:armhf (15-20250222-0ubuntu1) ... 560s Selecting previously unselected package libgcc-14-dev:armhf. 560s Preparing to unpack .../14-libgcc-14-dev_14.2.0-17ubuntu3_armhf.deb ... 560s Unpacking libgcc-14-dev:armhf (14.2.0-17ubuntu3) ... 561s Selecting previously unselected package gcc-14-arm-linux-gnueabihf. 561s Preparing to unpack .../15-gcc-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 561s Unpacking gcc-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 561s Selecting previously unselected package gcc-14. 561s Preparing to unpack .../16-gcc-14_14.2.0-17ubuntu3_armhf.deb ... 561s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 561s Selecting previously unselected package gcc-arm-linux-gnueabihf. 561s Preparing to unpack .../17-gcc-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 561s Unpacking gcc-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 561s Selecting previously unselected package gcc. 561s Preparing to unpack .../18-gcc_4%3a14.2.0-1ubuntu1_armhf.deb ... 561s Unpacking gcc (4:14.2.0-1ubuntu1) ... 561s Selecting previously unselected package libstdc++-14-dev:armhf. 561s Preparing to unpack .../19-libstdc++-14-dev_14.2.0-17ubuntu3_armhf.deb ... 561s Unpacking libstdc++-14-dev:armhf (14.2.0-17ubuntu3) ... 561s Selecting previously unselected package g++-14-arm-linux-gnueabihf. 561s Preparing to unpack .../20-g++-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 561s Unpacking g++-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 562s Selecting previously unselected package g++-14. 562s Preparing to unpack .../21-g++-14_14.2.0-17ubuntu3_armhf.deb ... 562s Unpacking g++-14 (14.2.0-17ubuntu3) ... 562s Selecting previously unselected package g++-arm-linux-gnueabihf. 562s Preparing to unpack .../22-g++-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 562s Unpacking g++-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 562s Selecting previously unselected package g++. 562s Preparing to unpack .../23-g++_4%3a14.2.0-1ubuntu1_armhf.deb ... 562s Unpacking g++ (4:14.2.0-1ubuntu1) ... 562s Selecting previously unselected package build-essential. 562s Preparing to unpack .../24-build-essential_12.10ubuntu1_armhf.deb ... 562s Unpacking build-essential (12.10ubuntu1) ... 562s Selecting previously unselected package dctrl-tools. 562s Preparing to unpack .../25-dctrl-tools_2.24-3build3_armhf.deb ... 562s Unpacking dctrl-tools (2.24-3build3) ... 562s Selecting previously unselected package libgfortran-14-dev:armhf. 562s Preparing to unpack .../26-libgfortran-14-dev_14.2.0-17ubuntu3_armhf.deb ... 562s Unpacking libgfortran-14-dev:armhf (14.2.0-17ubuntu3) ... 562s Selecting previously unselected package gfortran-14-arm-linux-gnueabihf. 562s Preparing to unpack .../27-gfortran-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 562s Unpacking gfortran-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 562s Selecting previously unselected package gfortran-14. 562s Preparing to unpack .../28-gfortran-14_14.2.0-17ubuntu3_armhf.deb ... 562s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 562s Selecting previously unselected package gfortran-arm-linux-gnueabihf. 562s Preparing to unpack .../29-gfortran-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 562s Unpacking gfortran-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 562s Selecting previously unselected package gfortran. 562s Preparing to unpack .../30-gfortran_4%3a14.2.0-1ubuntu1_armhf.deb ... 562s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 562s Selecting previously unselected package icu-devtools. 562s Preparing to unpack .../31-icu-devtools_76.1-1ubuntu2_armhf.deb ... 562s Unpacking icu-devtools (76.1-1ubuntu2) ... 562s Selecting previously unselected package libblas-dev:armhf. 562s Preparing to unpack .../32-libblas-dev_3.12.1-2_armhf.deb ... 562s Unpacking libblas-dev:armhf (3.12.1-2) ... 562s Selecting previously unselected package libbz2-dev:armhf. 562s Preparing to unpack .../33-libbz2-dev_1.0.8-6_armhf.deb ... 562s Unpacking libbz2-dev:armhf (1.0.8-6) ... 562s Selecting previously unselected package libdeflate-dev:armhf. 562s Preparing to unpack .../34-libdeflate-dev_1.23-1_armhf.deb ... 562s Unpacking libdeflate-dev:armhf (1.23-1) ... 562s Selecting previously unselected package libicu-dev:armhf. 562s Preparing to unpack .../35-libicu-dev_76.1-1ubuntu2_armhf.deb ... 562s Unpacking libicu-dev:armhf (76.1-1ubuntu2) ... 563s Selecting previously unselected package libjpeg-turbo8-dev:armhf. 563s Preparing to unpack .../36-libjpeg-turbo8-dev_2.1.5-3ubuntu2_armhf.deb ... 563s Unpacking libjpeg-turbo8-dev:armhf (2.1.5-3ubuntu2) ... 563s Selecting previously unselected package libjpeg8-dev:armhf. 563s Preparing to unpack .../37-libjpeg8-dev_8c-2ubuntu11_armhf.deb ... 563s Unpacking libjpeg8-dev:armhf (8c-2ubuntu11) ... 563s Selecting previously unselected package libjpeg-dev:armhf. 563s Preparing to unpack .../38-libjpeg-dev_8c-2ubuntu11_armhf.deb ... 563s Unpacking libjpeg-dev:armhf (8c-2ubuntu11) ... 563s Selecting previously unselected package liblapack-dev:armhf. 563s Preparing to unpack .../39-liblapack-dev_3.12.1-2_armhf.deb ... 563s Unpacking liblapack-dev:armhf (3.12.1-2) ... 563s Selecting previously unselected package libncurses-dev:armhf. 563s Preparing to unpack .../40-libncurses-dev_6.5+20250216-2_armhf.deb ... 563s Unpacking libncurses-dev:armhf (6.5+20250216-2) ... 563s Selecting previously unselected package libpcre2-16-0:armhf. 563s Preparing to unpack .../41-libpcre2-16-0_10.45-1_armhf.deb ... 563s Unpacking libpcre2-16-0:armhf (10.45-1) ... 563s Selecting previously unselected package libpcre2-32-0:armhf. 563s Preparing to unpack .../42-libpcre2-32-0_10.45-1_armhf.deb ... 563s Unpacking libpcre2-32-0:armhf (10.45-1) ... 563s Selecting previously unselected package libpcre2-posix3:armhf. 563s Preparing to unpack .../43-libpcre2-posix3_10.45-1_armhf.deb ... 563s Unpacking libpcre2-posix3:armhf (10.45-1) ... 563s Selecting previously unselected package libpcre2-dev:armhf. 563s Preparing to unpack .../44-libpcre2-dev_10.45-1_armhf.deb ... 563s Unpacking libpcre2-dev:armhf (10.45-1) ... 563s Selecting previously unselected package libpkgconf3:armhf. 563s Preparing to unpack .../45-libpkgconf3_1.8.1-4_armhf.deb ... 563s Unpacking libpkgconf3:armhf (1.8.1-4) ... 563s Selecting previously unselected package zlib1g-dev:armhf. 563s Preparing to unpack .../46-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_armhf.deb ... 563s Unpacking zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 563s Selecting previously unselected package libpng-dev:armhf. 563s Preparing to unpack .../47-libpng-dev_1.6.47-1_armhf.deb ... 563s Unpacking libpng-dev:armhf (1.6.47-1) ... 563s Selecting previously unselected package libreadline-dev:armhf. 563s Preparing to unpack .../48-libreadline-dev_8.2-6_armhf.deb ... 563s Unpacking libreadline-dev:armhf (8.2-6) ... 563s Selecting previously unselected package liblzma-dev:armhf. 563s Preparing to unpack .../49-liblzma-dev_5.6.4-1_armhf.deb ... 563s Unpacking liblzma-dev:armhf (5.6.4-1) ... 564s Selecting previously unselected package pkgconf-bin. 564s Preparing to unpack .../50-pkgconf-bin_1.8.1-4_armhf.deb ... 564s Unpacking pkgconf-bin (1.8.1-4) ... 564s Selecting previously unselected package pkgconf:armhf. 564s Preparing to unpack .../51-pkgconf_1.8.1-4_armhf.deb ... 564s Unpacking pkgconf:armhf (1.8.1-4) ... 564s Selecting previously unselected package libtirpc-dev:armhf. 564s Preparing to unpack .../52-libtirpc-dev_1.3.4+ds-1.3_armhf.deb ... 564s Unpacking libtirpc-dev:armhf (1.3.4+ds-1.3) ... 564s Selecting previously unselected package r-base-dev. 564s Preparing to unpack .../53-r-base-dev_4.4.3-1_all.deb ... 564s Unpacking r-base-dev (4.4.3-1) ... 564s Selecting previously unselected package pkg-r-autopkgtest. 564s Preparing to unpack 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(1.17.0+dfsg-1) ... 564s Selecting previously unselected package r-cran-fs. 564s Preparing to unpack .../60-r-cran-fs_1.6.5+dfsg-1_armhf.deb ... 564s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 564s Selecting previously unselected package r-cran-crayon. 564s Preparing to unpack .../61-r-cran-crayon_1.5.3-1_all.deb ... 564s Unpacking r-cran-crayon (1.5.3-1) ... 564s Selecting previously unselected package r-cran-hms. 564s Preparing to unpack .../62-r-cran-hms_1.1.3-1_all.deb ... 564s Unpacking r-cran-hms (1.1.3-1) ... 564s Selecting previously unselected package r-cran-prettyunits. 564s Preparing to unpack .../63-r-cran-prettyunits_1.2.0-1_all.deb ... 564s Unpacking r-cran-prettyunits (1.2.0-1) ... 564s Selecting previously unselected package r-cran-progress. 565s Preparing to unpack .../64-r-cran-progress_1.2.3-1_all.deb ... 565s Unpacking r-cran-progress (1.2.3-1) ... 565s Selecting previously unselected package r-cran-rappdirs. 565s Preparing to unpack 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libpcre2-16-0:armhf (10.45-1) ... 565s Setting up libpcre2-32-0:armhf (10.45-1) ... 565s Setting up r-cran-brew (1.0-10-1) ... 565s Setting up libtirpc-dev:armhf (1.3.4+ds-1.3) ... 565s Setting up libpkgconf3:armhf (1.8.1-4) ... 565s Setting up rpcsvc-proto (1.4.2-0ubuntu7) ... 565s Setting up r-cran-stringi (1.8.4-1build1) ... 565s Setting up r-cran-hms (1.1.3-1) ... 565s Setting up r-cran-crayon (1.5.3-1) ... 565s Setting up libmpc3:armhf (1.3.1-1build2) ... 565s Setting up icu-devtools (76.1-1ubuntu2) ... 565s Setting up pkgconf-bin (1.8.1-4) ... 565s Setting up liblzma-dev:armhf (5.6.4-1) ... 565s Setting up libubsan1:armhf (15-20250222-0ubuntu1) ... 565s Setting up libpcre2-posix3:armhf (10.45-1) ... 565s Setting up libcrypt-dev:armhf (1:4.4.38-1) ... 565s Setting up libasan8:armhf (15-20250222-0ubuntu1) ... 565s Setting up libgcc-14-dev:armhf (14.2.0-17ubuntu3) ... 565s Setting up libisl23:armhf (0.27-1) ... 565s Setting up libc-dev-bin (2.41-1ubuntu2) ... 565s Setting up libdeflate-dev:armhf (1.23-1) ... 565s Setting up r-cran-progress (1.2.3-1) ... 565s Setting up libcc1-0:armhf (15-20250222-0ubuntu1) ... 565s Setting up r-cran-rappdirs (0.3.3-1) ... 565s Setting up libblas-dev:armhf (3.12.1-2) ... 565s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode 565s Setting up dctrl-tools (2.24-3build3) ... 565s Setting up cpp-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 565s Setting up libgfortran-14-dev:armhf (14.2.0-17ubuntu3) ... 565s Setting up r-cran-base64url (1.4-2build1) ... 565s Setting up gcc-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 565s Setting up pkgconf:armhf (1.8.1-4) ... 565s Setting up liblapack-dev:armhf (3.12.1-2) ... 565s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode 565s Setting up cpp-14 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(1:1.3.dfsg+really1.3.1-1ubuntu1) ... 565s Setting up cpp (4:14.2.0-1ubuntu1) ... 565s Setting up g++-14 (14.2.0-17ubuntu3) ... 565s Setting up libjpeg8-dev:armhf (8c-2ubuntu11) ... 565s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 565s Setting up g++-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 565s Setting up libpng-dev:armhf (1.6.47-1) ... 565s Setting up libjpeg-dev:armhf (8c-2ubuntu11) ... 565s Setting up gcc (4:14.2.0-1ubuntu1) ... 565s Setting up g++ (4:14.2.0-1ubuntu1) ... 565s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 565s Setting up build-essential (12.10ubuntu1) ... 565s Setting up gfortran (4:14.2.0-1ubuntu1) ... 565s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 565s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 565s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 565s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 565s Setting up r-base-dev (4.4.3-1) ... 565s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 565s Processing triggers for libc-bin (2.41-1ubuntu2) ... 565s Processing triggers for man-db (2.13.0-1) ... 566s Processing triggers for install-info (7.1.1-1) ... 574s autopkgtest [12:44:02]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 574s autopkgtest [12:44:02]: test pkg-r-autopkgtest: [----------------------- 577s Test: Try to load the R library gstat 577s 577s R version 4.4.3 (2025-02-28) -- "Trophy Case" 577s Copyright (C) 2025 The R Foundation for Statistical Computing 577s Platform: arm-unknown-linux-gnueabihf (32-bit) 577s 577s R is free software and comes with ABSOLUTELY NO WARRANTY. 577s You are welcome to redistribute it under certain conditions. 577s Type 'license()' or 'licence()' for distribution details. 577s 577s R is a collaborative project with many contributors. 577s Type 'contributors()' for more information and 577s 'citation()' on how to cite R or R packages in publications. 577s 577s Type 'demo()' for some demos, 'help()' for on-line help, or 577s 'help.start()' for an HTML browser interface to help. 577s Type 'q()' to quit R. 577s 577s > library('gstat') 578s > 578s > 578s Other tests are currently unsupported! 578s They will be progressively added. 578s autopkgtest [12:44:06]: test pkg-r-autopkgtest: -----------------------] 582s pkg-r-autopkgtest PASS 582s autopkgtest [12:44:10]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 586s autopkgtest [12:44:14]: @@@@@@@@@@@@@@@@@@@@ summary 586s run-unit-test PASS 586s pkg-r-autopkgtest PASS