0s autopkgtest [21:29:47]: starting date and time: 2024-11-05 21:29:47+0000 0s autopkgtest [21:29:47]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [21:29:47]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5pabe4s_/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:r-cran-sf --apt-upgrade r-cran-gstat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-sf/1.0-17+dfsg-1 -- lxd -r lxd-armhf-10.145.243.52 lxd-armhf-10.145.243.52:autopkgtest/ubuntu/plucky/armhf 53s autopkgtest [21:30:40]: testbed dpkg architecture: armhf 55s autopkgtest [21:30:42]: testbed apt version: 2.9.8 55s autopkgtest [21:30:42]: @@@@@@@@@@@@@@@@@@@@ test bed setup 63s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 63s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 63s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [18.1 kB] 63s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1601 kB] 64s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [174 kB] 64s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [216 kB] 64s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [1209 kB] 64s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [17.7 kB] 64s Fetched 3318 kB in 1s (2817 kB/s) 64s Reading package lists... 82s tee: /proc/self/fd/2: Permission denied 104s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 104s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 104s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 104s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 106s Reading package lists... 106s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s Calculating upgrade... 109s The following packages were automatically installed and are no longer required: 109s libperl5.38t64 perl-modules-5.38 109s Use 'apt autoremove' to remove them. 109s The following NEW packages will be installed: 109s libperl5.40 perl-modules-5.40 109s The following packages will be upgraded: 109s base-files distro-info-data fwupd gcc-14-base info install-info iproute2 109s libatomic1 libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 109s libblockdev-mdraid3 libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 109s libblockdev-utils3 libblockdev3 libdb5.3t64 libdw1t64 libelf1t64 libevdev2 109s libftdi1-2 libfwupd2 libgcc-s1 libinih1 libkeyutils1 libldap-common libldap2 109s liblocale-gettext-perl libpipeline1 libsgutils2-1.46-2 libstdc++6 109s libtext-charwidth-perl libtext-iconv-perl libtraceevent1 109s libtraceevent1-plugin libxau6 motd-news-config nano perl perl-base 109s python3-configobj python3-json-pointer python3-lazr.uri python3-oauthlib 109s python3-zipp sg3-utils sg3-utils-udev vim-common vim-tiny xxd 109s 51 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 109s Need to get 20.0 MB of archives. 109s After this operation, 42.8 MB of additional disk space will be used. 109s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf motd-news-config all 13.5ubuntu2 [5274 B] 109s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf base-files armhf 13.5ubuntu2 [68.6 kB] 109s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-6 [3214 kB] 110s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-6 [4140 kB] 110s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-6 [262 kB] 110s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-6 [1674 kB] 110s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf liblocale-gettext-perl armhf 1.07-7build1 [15.0 kB] 110s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-iconv-perl armhf 1.7-8build4 [12.8 kB] 110s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-charwidth-perl armhf 0.04-11build4 [9128 B] 110s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [655 kB] 110s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-7ubuntu1 [7842 B] 110s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-7ubuntu1 [51.2 kB] 110s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-7ubuntu1 [711 kB] 110s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-7ubuntu1 [40.8 kB] 110s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf install-info armhf 7.1.1-1 [61.4 kB] 110s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf distro-info-data all 0.63 [6588 B] 110s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB] 110s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libelf1t64 armhf 0.192-4 [50.2 kB] 110s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf iproute2 armhf 6.10.0-2ubuntu1 [1082 kB] 110s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libkeyutils1 armhf 1.6.3-4ubuntu2 [8712 B] 110s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf vim-tiny armhf 2:9.1.0777-1ubuntu1 [693 kB] 110s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf vim-common all 2:9.1.0777-1ubuntu1 [394 kB] 110s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf xxd armhf 2:9.1.0777-1ubuntu1 [66.8 kB] 110s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf info armhf 7.1.1-1 [126 kB] 110s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libevdev2 armhf 1.13.3+dfsg-1 [29.7 kB] 110s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libpipeline1 armhf 1.5.8-1 [26.9 kB] 110s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1-plugin armhf 1:1.8.3-1ubuntu1 [18.1 kB] 110s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1 armhf 1:1.8.3-1ubuntu1 [52.1 kB] 110s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libxau6 armhf 1:1.0.11-1 [6558 B] 110s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.2-1 [276 kB] 110s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd2 armhf 1.9.26-2 [125 kB] 110s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 1.9.26-2 [4404 kB] 110s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-utils3 armhf 3.2.0-2 [17.4 kB] 110s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-crypto3 armhf 3.2.0-2 [22.3 kB] 110s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-fs3 armhf 3.2.0-2 [34.3 kB] 110s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-loop3 armhf 3.2.0-2 [6552 B] 110s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-mdraid3 armhf 3.2.0-2 [13.4 kB] 110s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-nvme3 armhf 3.2.0-2 [17.6 kB] 110s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-part3 armhf 3.2.0-2 [16.5 kB] 110s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-swap3 armhf 3.2.0-2 [8942 B] 110s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev3 armhf 3.2.0-2 [44.2 kB] 111s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7 [25.7 kB] 111s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libinih1 armhf 58-1ubuntu1 [6750 B] 111s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libldap-common all 2.6.8+dfsg-1~exp4ubuntu3 [32.3 kB] 111s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libldap2 armhf 2.6.8+dfsg-1~exp4ubuntu3 [173 kB] 111s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libsgutils2-1.46-2 armhf 1.46-3ubuntu5 [82.5 kB] 111s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf python3-configobj all 5.0.9-1 [33.9 kB] 111s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-2 [8396 B] 111s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.uri all 1.0.6-4 [13.6 kB] 111s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf python3-oauthlib all 3.2.2-2 [89.8 kB] 111s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf python3-zipp all 3.20.2-1 [10.1 kB] 111s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils armhf 1.46-3ubuntu5 [816 kB] 111s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils-udev all 1.46-3ubuntu5 [5916 B] 111s Preconfiguring packages ... 111s Fetched 20.0 MB in 2s (11.3 MB/s) 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 111s Preparing to unpack .../motd-news-config_13.5ubuntu2_all.deb ... 111s Unpacking motd-news-config (13.5ubuntu2) over (13.3ubuntu6) ... 111s Preparing to unpack .../base-files_13.5ubuntu2_armhf.deb ... 112s Unpacking base-files (13.5ubuntu2) over (13.3ubuntu6) ... 112s Setting up base-files (13.5ubuntu2) ... 112s Installing new version of config file /etc/issue ... 112s Installing new version of config file /etc/issue.net ... 112s Installing new version of config file /etc/lsb-release ... 112s motd-news.service is a disabled or a static unit not running, not starting it. 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 112s Preparing to unpack .../perl_5.40.0-6_armhf.deb ... 112s Unpacking perl (5.40.0-6) over (5.38.2-5) ... 112s Selecting previously unselected package perl-modules-5.40. 112s Preparing to unpack .../perl-modules-5.40_5.40.0-6_all.deb ... 112s Unpacking perl-modules-5.40 (5.40.0-6) ... 113s Selecting previously unselected package libperl5.40:armhf. 113s Preparing to unpack .../libperl5.40_5.40.0-6_armhf.deb ... 113s Unpacking libperl5.40:armhf (5.40.0-6) ... 113s Preparing to unpack .../perl-base_5.40.0-6_armhf.deb ... 113s Unpacking perl-base (5.40.0-6) over (5.38.2-5) ... 113s Setting up perl-base (5.40.0-6) ... 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 113s Preparing to unpack .../liblocale-gettext-perl_1.07-7build1_armhf.deb ... 114s Unpacking liblocale-gettext-perl (1.07-7build1) over (1.07-7) ... 114s Preparing to unpack .../libtext-iconv-perl_1.7-8build4_armhf.deb ... 114s Unpacking libtext-iconv-perl:armhf (1.7-8build4) over (1.7-8build3) ... 114s Preparing to unpack .../libtext-charwidth-perl_0.04-11build4_armhf.deb ... 114s Unpacking libtext-charwidth-perl:armhf (0.04-11build4) over (0.04-11build3) ... 114s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-9_armhf.deb ... 114s Unpacking libdb5.3t64:armhf (5.3.28+dfsg2-9) over (5.3.28+dfsg2-7) ... 114s Setting up libdb5.3t64:armhf (5.3.28+dfsg2-9) ... 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 114s Preparing to unpack .../libatomic1_14.2.0-7ubuntu1_armhf.deb ... 114s Unpacking libatomic1:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ... 114s Preparing to unpack .../gcc-14-base_14.2.0-7ubuntu1_armhf.deb ... 114s Unpacking gcc-14-base:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ... 114s Setting up gcc-14-base:armhf (14.2.0-7ubuntu1) ... 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 114s Preparing to unpack .../libstdc++6_14.2.0-7ubuntu1_armhf.deb ... 114s Unpacking libstdc++6:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ... 114s Setting up libstdc++6:armhf (14.2.0-7ubuntu1) ... 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 114s Preparing to unpack .../libgcc-s1_14.2.0-7ubuntu1_armhf.deb ... 114s Unpacking libgcc-s1:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ... 114s Setting up libgcc-s1:armhf (14.2.0-7ubuntu1) ... 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 114s Preparing to unpack .../install-info_7.1.1-1_armhf.deb ... 114s Unpacking install-info (7.1.1-1) over (7.1-3build2) ... 114s Setting up install-info (7.1.1-1) ... 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 114s Preparing to unpack .../00-distro-info-data_0.63_all.deb ... 114s Unpacking distro-info-data (0.63) over (0.62) ... 114s Preparing to unpack .../01-libdw1t64_0.192-4_armhf.deb ... 114s Unpacking libdw1t64:armhf (0.192-4) over (0.191-2) ... 114s Preparing to unpack .../02-libelf1t64_0.192-4_armhf.deb ... 114s Unpacking libelf1t64:armhf (0.192-4) over (0.191-2) ... 114s Preparing to unpack .../03-iproute2_6.10.0-2ubuntu1_armhf.deb ... 115s Unpacking iproute2 (6.10.0-2ubuntu1) over (6.10.0-2) ... 115s Preparing to unpack .../04-libkeyutils1_1.6.3-4ubuntu2_armhf.deb ... 115s Unpacking libkeyutils1:armhf (1.6.3-4ubuntu2) over (1.6.3-3build1) ... 115s Preparing to unpack .../05-vim-tiny_2%3a9.1.0777-1ubuntu1_armhf.deb ... 115s Unpacking vim-tiny (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ... 115s Preparing to unpack .../06-vim-common_2%3a9.1.0777-1ubuntu1_all.deb ... 115s Unpacking vim-common (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ... 115s Preparing to unpack .../07-xxd_2%3a9.1.0777-1ubuntu1_armhf.deb ... 115s Unpacking xxd (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ... 115s Preparing to unpack .../08-info_7.1.1-1_armhf.deb ... 115s Unpacking info (7.1.1-1) over (7.1-3build2) ... 115s Preparing to unpack .../09-libevdev2_1.13.3+dfsg-1_armhf.deb ... 115s Unpacking libevdev2:armhf (1.13.3+dfsg-1) over (1.13.2+dfsg-1) ... 115s Preparing to unpack .../10-libpipeline1_1.5.8-1_armhf.deb ... 115s Unpacking libpipeline1:armhf (1.5.8-1) over (1.5.7-2) ... 115s Preparing to unpack .../11-libtraceevent1-plugin_1%3a1.8.3-1ubuntu1_armhf.deb ... 115s Unpacking libtraceevent1-plugin:armhf (1:1.8.3-1ubuntu1) over (1:1.8.2-1ubuntu3) ... 115s Preparing to unpack .../12-libtraceevent1_1%3a1.8.3-1ubuntu1_armhf.deb ... 115s Unpacking libtraceevent1:armhf (1:1.8.3-1ubuntu1) over (1:1.8.2-1ubuntu3) ... 115s Preparing to unpack .../13-libxau6_1%3a1.0.11-1_armhf.deb ... 115s Unpacking libxau6:armhf (1:1.0.11-1) over (1:1.0.9-1build6) ... 115s Preparing to unpack .../14-nano_8.2-1_armhf.deb ... 115s Unpacking nano (8.2-1) over (8.1-1) ... 115s Preparing to unpack .../15-libfwupd2_1.9.26-2_armhf.deb ... 115s Unpacking libfwupd2:armhf (1.9.26-2) over (1.9.24-1) ... 115s Preparing to unpack .../16-fwupd_1.9.26-2_armhf.deb ... 116s Unpacking fwupd (1.9.26-2) over (1.9.24-1) ... 116s Preparing to unpack .../17-libblockdev-utils3_3.2.0-2_armhf.deb ... 116s Unpacking libblockdev-utils3:armhf (3.2.0-2) over (3.1.1-2) ... 116s Preparing to unpack .../18-libblockdev-crypto3_3.2.0-2_armhf.deb ... 116s Unpacking libblockdev-crypto3:armhf (3.2.0-2) over (3.1.1-2) ... 116s Preparing to unpack .../19-libblockdev-fs3_3.2.0-2_armhf.deb ... 116s Unpacking libblockdev-fs3:armhf (3.2.0-2) over (3.1.1-2) ... 116s Preparing to unpack .../20-libblockdev-loop3_3.2.0-2_armhf.deb ... 116s Unpacking libblockdev-loop3:armhf (3.2.0-2) over (3.1.1-2) ... 116s Preparing to unpack .../21-libblockdev-mdraid3_3.2.0-2_armhf.deb ... 116s Unpacking libblockdev-mdraid3:armhf (3.2.0-2) over (3.1.1-2) ... 116s Preparing to unpack .../22-libblockdev-nvme3_3.2.0-2_armhf.deb ... 116s Unpacking libblockdev-nvme3:armhf (3.2.0-2) over (3.1.1-2) ... 116s Preparing to unpack .../23-libblockdev-part3_3.2.0-2_armhf.deb ... 116s Unpacking libblockdev-part3:armhf (3.2.0-2) over (3.1.1-2) ... 116s Preparing to unpack .../24-libblockdev-swap3_3.2.0-2_armhf.deb ... 116s Unpacking libblockdev-swap3:armhf (3.2.0-2) over (3.1.1-2) ... 116s Preparing to unpack .../25-libblockdev3_3.2.0-2_armhf.deb ... 116s Unpacking libblockdev3:armhf (3.2.0-2) over (3.1.1-2) ... 116s Preparing to unpack .../26-libftdi1-2_1.5-7_armhf.deb ... 116s Unpacking libftdi1-2:armhf (1.5-7) over (1.5-6build5) ... 116s Preparing to unpack .../27-libinih1_58-1ubuntu1_armhf.deb ... 116s Unpacking libinih1:armhf (58-1ubuntu1) over (55-1ubuntu2) ... 116s Preparing to unpack .../28-libldap-common_2.6.8+dfsg-1~exp4ubuntu3_all.deb ... 116s Unpacking libldap-common (2.6.8+dfsg-1~exp4ubuntu3) over (2.6.8+dfsg-1~exp4ubuntu1) ... 116s Preparing to unpack .../29-libldap2_2.6.8+dfsg-1~exp4ubuntu3_armhf.deb ... 116s Unpacking libldap2:armhf (2.6.8+dfsg-1~exp4ubuntu3) over (2.6.8+dfsg-1~exp4ubuntu1) ... 116s Preparing to unpack .../30-libsgutils2-1.46-2_1.46-3ubuntu5_armhf.deb ... 116s Unpacking libsgutils2-1.46-2:armhf (1.46-3ubuntu5) over (1.46-3ubuntu4) ... 116s Preparing to unpack .../31-python3-configobj_5.0.9-1_all.deb ... 116s Unpacking python3-configobj (5.0.9-1) over (5.0.8-3) ... 116s Preparing to unpack .../32-python3-json-pointer_2.4-2_all.deb ... 117s Unpacking python3-json-pointer (2.4-2) over (2.0-0ubuntu1) ... 117s Preparing to unpack .../33-python3-lazr.uri_1.0.6-4_all.deb ... 117s Unpacking python3-lazr.uri (1.0.6-4) over (1.0.6-3) ... 117s Preparing to unpack .../34-python3-oauthlib_3.2.2-2_all.deb ... 117s Unpacking python3-oauthlib (3.2.2-2) over (3.2.2-1) ... 117s Preparing to unpack .../35-python3-zipp_3.20.2-1_all.deb ... 117s Unpacking python3-zipp (3.20.2-1) over (3.20.0-1) ... 117s Preparing to unpack .../36-sg3-utils_1.46-3ubuntu5_armhf.deb ... 117s Unpacking sg3-utils (1.46-3ubuntu5) over (1.46-3ubuntu4) ... 117s Preparing to unpack .../37-sg3-utils-udev_1.46-3ubuntu5_all.deb ... 117s Unpacking sg3-utils-udev (1.46-3ubuntu5) over (1.46-3ubuntu4) ... 117s Setting up libpipeline1:armhf (1.5.8-1) ... 117s Setting up motd-news-config (13.5ubuntu2) ... 117s Setting up libtext-iconv-perl:armhf (1.7-8build4) ... 117s Setting up libtext-charwidth-perl:armhf (0.04-11build4) ... 117s Setting up libxau6:armhf (1:1.0.11-1) ... 117s Setting up libkeyutils1:armhf (1.6.3-4ubuntu2) ... 117s Setting up distro-info-data (0.63) ... 117s Setting up libinih1:armhf (58-1ubuntu1) ... 117s Setting up libfwupd2:armhf (1.9.26-2) ... 117s Setting up libsgutils2-1.46-2:armhf (1.46-3ubuntu5) ... 117s Setting up python3-lazr.uri (1.0.6-4) ... 117s Setting up python3-zipp (3.20.2-1) ... 117s Setting up libldap-common (2.6.8+dfsg-1~exp4ubuntu3) ... 117s Setting up xxd (2:9.1.0777-1ubuntu1) ... 117s Setting up libelf1t64:armhf (0.192-4) ... 117s Setting up libdw1t64:armhf (0.192-4) ... 117s Setting up libftdi1-2:armhf (1.5-7) ... 117s Setting up python3-oauthlib (3.2.2-2) ... 118s Setting up python3-configobj (5.0.9-1) ... 118s Setting up vim-common (2:9.1.0777-1ubuntu1) ... 118s Installing new version of config file /etc/vim/vimrc ... 118s Setting up libblockdev-utils3:armhf (3.2.0-2) ... 118s Setting up libatomic1:armhf (14.2.0-7ubuntu1) ... 118s Setting up libblockdev-nvme3:armhf (3.2.0-2) ... 118s Setting up nano (8.2-1) ... 118s Setting up libblockdev-fs3:armhf (3.2.0-2) ... 118s Setting up perl-modules-5.40 (5.40.0-6) ... 118s Setting up python3-json-pointer (2.4-2) ... 118s Setting up libtraceevent1:armhf (1:1.8.3-1ubuntu1) ... 118s Setting up libevdev2:armhf (1.13.3+dfsg-1) ... 118s Setting up libldap2:armhf (2.6.8+dfsg-1~exp4ubuntu3) ... 118s Setting up fwupd (1.9.26-2) ... 118s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 118s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 118s fwupd.service is a disabled or a static unit not running, not starting it. 118s Setting up info (7.1.1-1) ... 119s Setting up liblocale-gettext-perl (1.07-7build1) ... 119s Setting up sg3-utils (1.46-3ubuntu5) ... 119s Setting up libblockdev-mdraid3:armhf (3.2.0-2) ... 119s Setting up libblockdev-crypto3:armhf (3.2.0-2) ... 119s Setting up libblockdev-swap3:armhf (3.2.0-2) ... 119s Setting up iproute2 (6.10.0-2ubuntu1) ... 119s Setting up libblockdev-loop3:armhf (3.2.0-2) ... 119s Setting up vim-tiny (2:9.1.0777-1ubuntu1) ... 119s Setting up libblockdev3:armhf (3.2.0-2) ... 119s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ... 119s Setting up libblockdev-part3:armhf (3.2.0-2) ... 119s Setting up sg3-utils-udev (1.46-3ubuntu5) ... 119s update-initramfs: deferring update (trigger activated) 119s Setting up libperl5.40:armhf (5.40.0-6) ... 119s Setting up perl (5.40.0-6) ... 119s Setting up libtraceevent1-plugin:armhf (1:1.8.3-1ubuntu1) ... 119s Processing triggers for initramfs-tools (0.142ubuntu34) ... 119s Processing triggers for libc-bin (2.40-1ubuntu3) ... 119s Processing triggers for man-db (2.12.1-3) ... 121s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-1ubuntu10) ... 121s update-initramfs: deferring update (trigger activated) 121s Processing triggers for dbus (1.14.10-4ubuntu5) ... 121s Processing triggers for install-info (7.1.1-1) ... 121s Processing triggers for initramfs-tools (0.142ubuntu34) ... 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 122s The following packages will be REMOVED: 122s libperl5.38t64* perl-modules-5.38* 122s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 122s After this operation, 41.6 MB disk space will be freed. 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 122s Removing libperl5.38t64:armhf (5.38.2-5) ... 122s Removing perl-modules-5.38 (5.38.2-5) ... 122s Processing triggers for man-db (2.12.1-3) ... 123s Processing triggers for libc-bin (2.40-1ubuntu3) ... 125s autopkgtest [21:31:52]: rebooting testbed after setup commands that affected boot 191s autopkgtest [21:32:58]: testbed running kernel: Linux 6.8.0-47-generic #47~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Oct 2 16:39:14 UTC 2 218s autopkgtest [21:33:25]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-gstat 228s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-1-2 (dsc) [2280 B] 228s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-1-2 (tar) [2298 kB] 228s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-gstat 2.1-1-2 (diff) [3644 B] 228s gpgv: Signature made Sat Aug 19 19:47:01 2023 UTC 228s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 228s gpgv: issuer "tille@debian.org" 228s gpgv: Can't check signature: No public key 228s dpkg-source: warning: cannot verify inline signature for ./r-cran-gstat_2.1-1-2.dsc: no acceptable signature found 228s autopkgtest [21:33:35]: testing package r-cran-gstat version 2.1-1-2 230s autopkgtest [21:33:37]: build not needed 234s autopkgtest [21:33:41]: test run-unit-test: preparing testbed 243s Reading package lists... 244s Building dependency tree... 244s Reading state information... 244s Starting pkgProblemResolver with broken count: 0 244s Starting 2 pkgProblemResolver with broken count: 0 244s Done 245s The following additional packages will be installed: 245s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gdal-data 245s gdal-plugins libaec0 libaom3 libarmadillo14 libarpack2t64 libblas3 libblosc1 245s libcairo2 libcfitsio10t64 libdatrie1 libde265-0 libdeflate0 libfontconfig1 245s libfreetype6 libfreexl1 libfyba0t64 libgdal35 libgeos-c1t64 libgeos3.12.2 245s libgeotiff5 libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b 245s libhdf4-0-alt libhdf5-103-1t64 libhdf5-hl-100t64 libheif-plugin-aomdec 245s libheif-plugin-libde265 libheif1 libice6 libjbig0 libjpeg-turbo8 libjpeg8 245s libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 245s libltdl7 libminizip1t64 libmysqlclient21 libnetcdf19t64 libodbc2 245s libodbcinst2 libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 245s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpoppler140 245s libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 245s libspatialite8t64 libsuperlu6 libsz2 libtcl8.6 libthai-data libthai0 245s libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7 245s libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 245s libxt6t64 littler mysql-common proj-data r-base-core r-cran-abind 245s r-cran-class r-cran-classint r-cran-codetools r-cran-dbi r-cran-digest 245s r-cran-dotcall64 r-cran-e1071 r-cran-fields r-cran-fnn r-cran-future 245s r-cran-future.apply r-cran-globals r-cran-gstat r-cran-intervals 245s r-cran-kernsmooth r-cran-lattice r-cran-listenv r-cran-littler 245s r-cran-magrittr r-cran-mapdata r-cran-maps r-cran-mass r-cran-parallelly 245s r-cran-pkgkitten r-cran-proxy r-cran-raster r-cran-rcpp r-cran-rlang 245s r-cran-s2 r-cran-sf r-cran-sftime r-cran-sp r-cran-spacetime r-cran-spam 245s r-cran-stars r-cran-terra r-cran-units r-cran-viridislite r-cran-wk 245s r-cran-xts r-cran-zoo unixodbc-common unzip x11-common xdg-utils zip 245s Suggested packages: 245s geotiff-bin gdal-bin libgeotiff-epsg libhdf4-alt-dev hdf4-tools 245s libheif-plugin-x265 libheif-plugin-ffmpegdec libheif-plugin-jpegdec 245s libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc 245s libheif-plugin-kvazaar libheif-plugin-rav1e libheif-plugin-svtenc 245s liblcms2-utils odbc-postgresql tdsodbc ogdi-bin proj-bin tcl8.6 tk8.6 245s elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-rmysql 245s r-cran-mvtnorm r-cran-getopt r-cran-covr r-cran-knitr r-cran-rmarkdown 245s r-cran-mapproj r-cran-inline 245s Recommended packages: 245s proj-bin libheif-plugin-aomenc poppler-data r-recommended r-base-dev 245s r-doc-html r-cran-spdata r-cran-knitr r-cran-rmarkdown r-cran-tinytest 245s r-cran-rhpcblasctl r-cran-rcolorbrewer r-cran-roxygen2 r-cran-testthat 245s r-cran-r.rsp r-cran-markdown r-cran-r.utils r-cran-crayon r-cran-cba 245s r-cran-ncdf4 r-cran-igraph r-cran-exactextractr r-cran-cli r-cran-covr 245s r-cran-fs r-cran-glue r-cran-pillar r-cran-tibble r-cran-usethis 245s r-cran-vctrs r-cran-withr r-cran-bit64 r-cran-blob r-cran-nanoarrow 245s r-cran-dplyr r-cran-ggplot2 r-cran-lwgeom r-cran-matrix 245s r-cran-microbenchmark r-cran-pbapply r-cran-rpostgresql r-cran-rsqlite 245s r-cran-spatstat r-cran-spatstat.geom r-cran-spatstat.random 245s r-cran-spatstat.linnet r-cran-spatstat.utils r-cran-tidyr r-cran-tidyselect 245s r-cran-ncmeta r-cran-deldir r-cran-foreign r-cran-plm r-cran-googlevis 245s r-cran-isocodes r-cran-truncdist r-cran-cairo r-cran-pcict r-cran-rnetcdf 245s r-cran-clue r-cran-cubelyr r-cran-ggforce r-cran-ggthemes r-cran-httr 245s r-cran-jsonlite r-cran-ncdfgeom r-cran-randomforest r-cran-viridis 245s r-cran-xml r-cran-htmlwidgets r-cran-xml2 r-cran-vdiffr r-cran-readr 245s r-cran-timeseries r-cran-timedate r-cran-tseries r-cran-chron 245s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 245s x11-xserver-utils 245s The following NEW packages will be installed: 245s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 245s fonts-dejavu-mono gdal-data gdal-plugins libaec0 libaom3 libarmadillo14 245s libarpack2t64 libblas3 libblosc1 libcairo2 libcfitsio10t64 libdatrie1 245s libde265-0 libdeflate0 libfontconfig1 libfreetype6 libfreexl1 libfyba0t64 245s libgdal35 libgeos-c1t64 libgeos3.12.2 libgeotiff5 libgfortran5 libgif7 245s libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1t64 245s libhdf5-hl-100t64 libheif-plugin-aomdec libheif-plugin-libde265 libheif1 245s libice6 libjbig0 libjpeg-turbo8 libjpeg8 libkmlbase1t64 libkmldom1t64 245s libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 libminizip1t64 245s libmysqlclient21 libnetcdf19t64 libodbc2 libodbcinst2 libogdi4.1 245s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 245s libpaper-utils libpaper1 libpixman-1-0 libpoppler140 libpq5 libproj25 245s libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 245s libsuperlu6 libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 245s libudunits2-0 libudunits2-data liburiparser1 libwebp7 libxcb-render0 245s libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 libxt6t64 littler 245s mysql-common proj-data r-base-core r-cran-abind r-cran-class r-cran-classint 245s r-cran-codetools r-cran-dbi r-cran-digest r-cran-dotcall64 r-cran-e1071 245s r-cran-fields r-cran-fnn r-cran-future r-cran-future.apply r-cran-globals 245s r-cran-gstat r-cran-intervals r-cran-kernsmooth r-cran-lattice 245s r-cran-listenv r-cran-littler r-cran-magrittr r-cran-mapdata r-cran-maps 245s r-cran-mass r-cran-parallelly r-cran-pkgkitten r-cran-proxy r-cran-raster 245s r-cran-rcpp r-cran-rlang r-cran-s2 r-cran-sf r-cran-sftime r-cran-sp 245s r-cran-spacetime r-cran-spam r-cran-stars r-cran-terra r-cran-units 245s r-cran-viridislite r-cran-wk r-cran-xts r-cran-zoo unixodbc-common unzip 245s x11-common xdg-utils zip 245s 0 upgraded, 139 newly installed, 0 to remove and 0 not upgraded. 245s Need to get 140 MB/140 MB of archives. 245s After this operation, 268 MB of additional disk space will be used. 245s Get:1 /tmp/autopkgtest.gD8idJ/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [748 B] 245s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 246s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 246s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 247s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB] 247s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB] 247s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig armhf 2.15.0-1.1ubuntu2 [189 kB] 247s Get:8 http://ftpmaster.internal/ubuntu plucky/universe armhf gdal-data all 3.9.1+dfsg-1build2 [269 kB] 247s Get:9 http://ftpmaster.internal/ubuntu plucky/universe armhf gdal-plugins armhf 3.9.1+dfsg-1build2 [25.3 kB] 247s Get:10 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 247s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libaom3 armhf 3.9.1-1 [1712 kB] 247s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 247s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-7ubuntu1 [311 kB] 247s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 248s Get:15 http://ftpmaster.internal/ubuntu plucky/universe armhf libarpack2t64 armhf 3.9.1-1.1ubuntu1 [88.2 kB] 248s Get:16 http://ftpmaster.internal/ubuntu plucky/universe armhf libsuperlu6 armhf 6.0.1+dfsg1-1build3 [156 kB] 248s Get:17 http://ftpmaster.internal/ubuntu plucky/universe armhf libarmadillo14 armhf 1:14.0.1+dfsg-2 [102 kB] 248s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libsnappy1v5 armhf 1.2.1-1 [28.4 kB] 248s Get:19 http://ftpmaster.internal/ubuntu plucky/universe armhf libblosc1 armhf 1.21.5+ds-1build1 [23.7 kB] 248s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.42.2-1build1 [193 kB] 248s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 248s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 248s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 248s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB] 248s Get:25 http://ftpmaster.internal/ubuntu plucky/universe armhf libcfitsio10t64 armhf 4.4.1-2 [496 kB] 248s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libdatrie1 armhf 0.2.13-3build1 [15.7 kB] 248s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libde265-0 armhf 1.0.15-1build4 [157 kB] 248s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.21-1 [38.8 kB] 248s Get:29 http://ftpmaster.internal/ubuntu plucky/universe armhf libfyba0t64 armhf 4.1.1-11build1 [109 kB] 248s Get:30 http://ftpmaster.internal/ubuntu plucky/universe armhf libminizip1t64 armhf 1:1.3.dfsg+really1.3.1-1ubuntu1 [20.5 kB] 248s Get:31 http://ftpmaster.internal/ubuntu plucky/universe armhf libfreexl1 armhf 2.0.0-1build2 [37.6 kB] 248s Get:32 http://ftpmaster.internal/ubuntu plucky/universe armhf libgeos3.12.2 armhf 3.12.2-1 [868 kB] 248s Get:33 http://ftpmaster.internal/ubuntu plucky/universe armhf libgeos-c1t64 armhf 3.12.2-1 [92.8 kB] 248s Get:34 http://ftpmaster.internal/ubuntu plucky/universe armhf proj-data all 9.4.1-1 [7892 kB] 249s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 249s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu2 [125 kB] 249s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 249s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu2 [151 kB] 249s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB] 249s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB] 249s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 249s Get:42 http://ftpmaster.internal/ubuntu plucky/universe armhf libproj25 armhf 9.4.1-1 [1285 kB] 249s Get:43 http://ftpmaster.internal/ubuntu plucky/universe armhf libgeotiff5 armhf 1.7.3-1 [52.8 kB] 249s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libgif7 armhf 5.2.2-1ubuntu1 [32.6 kB] 249s Get:45 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 249s Get:46 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf4-0-alt armhf 4.3.0-1 [253 kB] 249s Get:47 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-4ubuntu3 [1327 kB] 249s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf libheif-plugin-aomdec armhf 1.18.1-2 [10.6 kB] 249s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libheif-plugin-libde265 armhf 1.18.1-2 [11.1 kB] 249s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf libheif1 armhf 1.18.1-2 [288 kB] 249s Get:51 http://ftpmaster.internal/ubuntu plucky/universe armhf liburiparser1 armhf 0.9.8+dfsg-1 [30.0 kB] 249s Get:52 http://ftpmaster.internal/ubuntu plucky/universe armhf libkmlbase1t64 armhf 1.3.0-12build1 [45.0 kB] 249s Get:53 http://ftpmaster.internal/ubuntu plucky/universe armhf libkmldom1t64 armhf 1.3.0-12build1 [145 kB] 249s Get:54 http://ftpmaster.internal/ubuntu plucky/universe armhf libkmlengine1t64 armhf 1.3.0-12build1 [69.6 kB] 249s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf mysql-common all 5.8+1.1.1 [6800 B] 249s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libmysqlclient21 armhf 8.0.39-1 [1234 kB] 249s Get:57 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-4ubuntu3 [55.9 kB] 249s Get:58 http://ftpmaster.internal/ubuntu plucky/universe armhf libnetcdf19t64 armhf 1:4.9.2-6ubuntu1 [419 kB] 249s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf libltdl7 armhf 2.4.7-7build1 [37.6 kB] 249s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf libodbc2 armhf 2.3.12-1ubuntu1 [144 kB] 249s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf unixodbc-common all 2.3.12-1ubuntu1 [8796 B] 249s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf libodbcinst2 armhf 2.3.12-1ubuntu1 [30.5 kB] 249s Get:63 http://ftpmaster.internal/ubuntu plucky/universe armhf libogdi4.1 armhf 4.1.1+ds-5 [185 kB] 249s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf libopenjp2-7 armhf 2.5.0-2ubuntu1 [170 kB] 249s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf liblcms2-2 armhf 2.14-2build1 [132 kB] 249s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf libpoppler140 armhf 24.08.0-1 [996 kB] 249s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf libpq5 armhf 17.0-1 [231 kB] 249s Get:68 http://ftpmaster.internal/ubuntu plucky/universe armhf libqhull-r8.0 armhf 2020.2-6build1 [173 kB] 249s Get:69 http://ftpmaster.internal/ubuntu plucky/universe armhf librttopo1 armhf 1.1.0-3build2 [160 kB] 249s Get:70 http://ftpmaster.internal/ubuntu plucky/universe armhf libspatialite8t64 armhf 5.1.0-3build1 [2019 kB] 249s Get:71 http://ftpmaster.internal/ubuntu plucky/universe armhf libxerces-c3.2t64 armhf 3.2.4+debian-1.3 [817 kB] 249s Get:72 http://ftpmaster.internal/ubuntu plucky/universe armhf libgdal35 armhf 3.9.1+dfsg-1build2 [8364 kB] 250s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-7ubuntu1 [125 kB] 250s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 250s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 9.0.0-1 [462 kB] 250s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 250s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libice6 armhf 2:1.0.10-1build3 [35.4 kB] 250s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libthai-data all 0.1.29-2build1 [158 kB] 250s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libthai0 armhf 0.1.29-2build1 [15.2 kB] 250s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf libpango-1.0-0 armhf 1.54.0+ds-2 [212 kB] 250s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf libpangoft2-1.0-0 armhf 1.54.0+ds-2 [42.9 kB] 250s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf libpangocairo-1.0-0 armhf 1.54.0+ds-2 [24.8 kB] 250s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf libpaper1 armhf 1.1.29build1 [12.6 kB] 250s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf libpaper-utils armhf 1.1.29build1 [8184 B] 250s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf libsm6 armhf 2:1.2.3-1build3 [14.1 kB] 250s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf libtcl8.6 armhf 8.6.14+dfsg-1build1 [903 kB] 250s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 250s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 250s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf libtk8.6 armhf 8.6.14-1build1 [681 kB] 250s Get:90 http://ftpmaster.internal/ubuntu plucky/universe armhf libudunits2-data all 2.2.28-7build1 [19.4 kB] 250s Get:91 http://ftpmaster.internal/ubuntu plucky/universe armhf libudunits2-0 armhf 2.2.28-7build1 [47.1 kB] 250s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf libxt6t64 armhf 1:1.2.1-1.2build1 [145 kB] 250s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf zip armhf 3.0-14 [164 kB] 250s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf unzip armhf 6.0-28ubuntu6 [167 kB] 250s Get:95 http://ftpmaster.internal/ubuntu plucky/main armhf xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 250s Get:96 http://ftpmaster.internal/ubuntu plucky/universe armhf r-base-core armhf 4.4.1-1 [28.1 MB] 251s Get:97 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-littler armhf 0.3.20-1 [82.6 kB] 251s Get:98 http://ftpmaster.internal/ubuntu plucky/universe armhf littler all 0.3.20-1 [2486 B] 251s Get:99 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-abind all 1.4-5-2 [63.6 kB] 251s Get:100 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-mass armhf 7.3-61-1 [1109 kB] 251s Get:101 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-class armhf 7.3-22-2build1 [87.0 kB] 251s Get:102 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-proxy armhf 0.4-27-1 [180 kB] 251s Get:103 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-e1071 armhf 1.7-14-1 [551 kB] 252s Get:104 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-kernsmooth armhf 2.23-24-1 [91.1 kB] 252s Get:105 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-classint armhf 0.4-10+dfsg-1 [105 kB] 252s Get:106 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-codetools all 0.2-20-1 [90.5 kB] 252s Get:107 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-dbi all 1.2.3-1 [853 kB] 252s Get:108 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-digest armhf 0.6.36-1 [204 kB] 252s Get:109 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-dotcall64 armhf 1.1-1-1 [39.2 kB] 252s Get:110 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 252s Get:111 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-rcpp armhf 1.0.13-1 [1977 kB] 252s Get:112 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-spam armhf 2.10-0-1 [2750 kB] 252s Get:113 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-viridislite all 0.4.2-2 [1088 kB] 252s Get:114 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-maps armhf 3.4.2-1 [2355 kB] 252s Get:115 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-fields armhf 16.2-1 [4387 kB] 252s Get:116 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-fnn armhf 1.1.4-1 [115 kB] 252s Get:117 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-globals all 0.16.3-1 [120 kB] 252s Get:118 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 252s Get:119 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-parallelly armhf 1.37.1-1build1 [364 kB] 252s Get:120 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-future all 1.33.1+dfsg-1 [634 kB] 252s Get:121 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-future.apply all 1.11.2+dfsg-1 [172 kB] 252s Get:122 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-lattice armhf 0.22-6-1 [1363 kB] 252s Get:123 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-sp armhf 1:2.1-2+dfsg-1 [1445 kB] 253s Get:124 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-zoo armhf 1.8-12-2 [984 kB] 253s Get:125 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-magrittr armhf 2.0.3-1 [154 kB] 253s Get:126 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-wk armhf 0.9.1-1 [1781 kB] 253s Get:127 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-s2 armhf 1.1.6-1build2 [1895 kB] 253s Get:128 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-units armhf 0.8-5+dfsg-1 [270 kB] 253s Get:129 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf r-cran-sf armhf 1.0-17+dfsg-1 [3249 kB] 253s Get:130 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-sftime all 0.2-0-6 [168 kB] 253s Get:131 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-xts armhf 0.13.2-1 [764 kB] 253s Get:132 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-intervals armhf 0.15.4-1 [754 kB] 253s Get:133 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-spacetime all 1.3-1-1 [2804 kB] 253s Get:134 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-rlang armhf 1.1.4-1 [1702 kB] 253s Get:135 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-stars all 0.6-6-1 [4105 kB] 253s Get:136 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-gstat armhf 2.1-1-2 [2331 kB] 253s Get:137 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-mapdata armhf 2.3.1-1 [23.5 MB] 254s Get:138 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-terra armhf 1.7-78-1 [3626 kB] 254s Get:139 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-raster armhf 3.6-26-1 [3093 kB] 255s Preconfiguring packages ... 255s Fetched 140 MB in 9s (15.0 MB/s) 255s Selecting previously unselected package libfreetype6:armhf. 255s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59532 files and directories currently installed.) 255s Preparing to unpack .../000-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 255s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 255s Selecting previously unselected package fonts-dejavu-mono. 255s Preparing to unpack .../001-fonts-dejavu-mono_2.37-8_all.deb ... 255s Unpacking fonts-dejavu-mono (2.37-8) ... 255s Selecting previously unselected package fonts-dejavu-core. 255s Preparing to unpack .../002-fonts-dejavu-core_2.37-8_all.deb ... 255s Unpacking fonts-dejavu-core (2.37-8) ... 256s Selecting previously unselected package fontconfig-config. 256s Preparing to unpack .../003-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ... 256s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 256s Selecting previously unselected package libfontconfig1:armhf. 256s Preparing to unpack .../004-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ... 256s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 256s Selecting previously unselected package fontconfig. 256s Preparing to unpack .../005-fontconfig_2.15.0-1.1ubuntu2_armhf.deb ... 256s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 256s Selecting previously unselected package gdal-data. 256s Preparing to unpack .../006-gdal-data_3.9.1+dfsg-1build2_all.deb ... 256s Unpacking gdal-data (3.9.1+dfsg-1build2) ... 256s Selecting previously unselected package gdal-plugins:armhf. 256s Preparing to unpack .../007-gdal-plugins_3.9.1+dfsg-1build2_armhf.deb ... 256s Unpacking gdal-plugins:armhf (3.9.1+dfsg-1build2) ... 256s Selecting previously unselected package libaec0:armhf. 256s Preparing to unpack .../008-libaec0_1.1.3-1_armhf.deb ... 256s Unpacking libaec0:armhf (1.1.3-1) ... 256s Selecting previously unselected package libaom3:armhf. 256s Preparing to unpack .../009-libaom3_3.9.1-1_armhf.deb ... 256s Unpacking libaom3:armhf (3.9.1-1) ... 256s Selecting previously unselected package libblas3:armhf. 256s Preparing to unpack .../010-libblas3_3.12.0-3build2_armhf.deb ... 256s Unpacking libblas3:armhf (3.12.0-3build2) ... 256s Selecting previously unselected package libgfortran5:armhf. 256s Preparing to unpack .../011-libgfortran5_14.2.0-7ubuntu1_armhf.deb ... 256s Unpacking libgfortran5:armhf (14.2.0-7ubuntu1) ... 256s Selecting previously unselected package liblapack3:armhf. 256s Preparing to unpack .../012-liblapack3_3.12.0-3build2_armhf.deb ... 256s Unpacking liblapack3:armhf (3.12.0-3build2) ... 256s Selecting previously unselected package libarpack2t64:armhf. 256s Preparing to unpack .../013-libarpack2t64_3.9.1-1.1ubuntu1_armhf.deb ... 256s Unpacking libarpack2t64:armhf (3.9.1-1.1ubuntu1) ... 256s Selecting previously unselected package libsuperlu6:armhf. 256s Preparing to unpack .../014-libsuperlu6_6.0.1+dfsg1-1build3_armhf.deb ... 256s Unpacking libsuperlu6:armhf (6.0.1+dfsg1-1build3) ... 256s Selecting previously unselected package libarmadillo14. 256s Preparing to unpack .../015-libarmadillo14_1%3a14.0.1+dfsg-2_armhf.deb ... 256s Unpacking libarmadillo14 (1:14.0.1+dfsg-2) ... 256s Selecting previously unselected package libsnappy1v5:armhf. 256s Preparing to unpack .../016-libsnappy1v5_1.2.1-1_armhf.deb ... 256s Unpacking libsnappy1v5:armhf (1.2.1-1) ... 257s Selecting previously unselected package libblosc1:armhf. 257s Preparing to unpack .../017-libblosc1_1.21.5+ds-1build1_armhf.deb ... 257s Unpacking libblosc1:armhf (1.21.5+ds-1build1) ... 257s Selecting previously unselected package libpixman-1-0:armhf. 257s Preparing to unpack .../018-libpixman-1-0_0.42.2-1build1_armhf.deb ... 257s Unpacking libpixman-1-0:armhf (0.42.2-1build1) ... 257s Selecting previously unselected package libxcb-render0:armhf. 257s Preparing to unpack .../019-libxcb-render0_1.17.0-2_armhf.deb ... 257s Unpacking libxcb-render0:armhf (1.17.0-2) ... 257s Selecting previously unselected package libxcb-shm0:armhf. 257s Preparing to unpack .../020-libxcb-shm0_1.17.0-2_armhf.deb ... 257s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 257s Selecting previously unselected package libxrender1:armhf. 257s Preparing to unpack .../021-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 257s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 257s Selecting previously unselected package libcairo2:armhf. 257s Preparing to unpack .../022-libcairo2_1.18.2-2_armhf.deb ... 257s Unpacking libcairo2:armhf (1.18.2-2) ... 257s Selecting previously unselected package libcfitsio10t64:armhf. 257s Preparing to unpack .../023-libcfitsio10t64_4.4.1-2_armhf.deb ... 257s Unpacking libcfitsio10t64:armhf (4.4.1-2) ... 257s Selecting previously unselected package libdatrie1:armhf. 257s Preparing to unpack .../024-libdatrie1_0.2.13-3build1_armhf.deb ... 257s Unpacking libdatrie1:armhf (0.2.13-3build1) ... 257s Selecting previously unselected package libde265-0:armhf. 257s Preparing to unpack .../025-libde265-0_1.0.15-1build4_armhf.deb ... 257s Unpacking libde265-0:armhf (1.0.15-1build4) ... 257s Selecting previously unselected package libdeflate0:armhf. 257s Preparing to unpack .../026-libdeflate0_1.21-1_armhf.deb ... 257s Unpacking libdeflate0:armhf (1.21-1) ... 257s Selecting previously unselected package libfyba0t64:armhf. 257s Preparing to unpack .../027-libfyba0t64_4.1.1-11build1_armhf.deb ... 257s Unpacking libfyba0t64:armhf (4.1.1-11build1) ... 257s Selecting previously unselected package libminizip1t64:armhf. 257s Preparing to unpack .../028-libminizip1t64_1%3a1.3.dfsg+really1.3.1-1ubuntu1_armhf.deb ... 257s Unpacking libminizip1t64:armhf (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 257s Selecting previously unselected package libfreexl1:armhf. 257s Preparing to unpack .../029-libfreexl1_2.0.0-1build2_armhf.deb ... 257s Unpacking libfreexl1:armhf (2.0.0-1build2) ... 257s Selecting previously unselected package libgeos3.12.2:armhf. 257s Preparing to unpack .../030-libgeos3.12.2_3.12.2-1_armhf.deb ... 257s Unpacking libgeos3.12.2:armhf (3.12.2-1) ... 257s Selecting previously unselected package libgeos-c1t64:armhf. 257s Preparing to unpack .../031-libgeos-c1t64_3.12.2-1_armhf.deb ... 257s Unpacking libgeos-c1t64:armhf (3.12.2-1) ... 257s Selecting previously unselected package proj-data. 257s Preparing to unpack .../032-proj-data_9.4.1-1_all.deb ... 257s Unpacking proj-data (9.4.1-1) ... 257s Selecting previously unselected package libjbig0:armhf. 257s Preparing to unpack .../033-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 257s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 257s Selecting previously unselected package libjpeg-turbo8:armhf. 257s Preparing to unpack .../034-libjpeg-turbo8_2.1.5-2ubuntu2_armhf.deb ... 257s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 257s Selecting previously unselected package libjpeg8:armhf. 257s Preparing to unpack .../035-libjpeg8_8c-2ubuntu11_armhf.deb ... 257s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 257s Selecting previously unselected package liblerc4:armhf. 257s Preparing to unpack .../036-liblerc4_4.0.0+ds-4ubuntu2_armhf.deb ... 257s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 257s Selecting previously unselected package libsharpyuv0:armhf. 258s Preparing to unpack .../037-libsharpyuv0_1.4.0-0.1_armhf.deb ... 258s Unpacking libsharpyuv0:armhf (1.4.0-0.1) ... 258s Selecting previously unselected package libwebp7:armhf. 258s Preparing to unpack .../038-libwebp7_1.4.0-0.1_armhf.deb ... 258s Unpacking libwebp7:armhf (1.4.0-0.1) ... 258s Selecting previously unselected package libtiff6:armhf. 258s Preparing to unpack .../039-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 258s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 258s Selecting previously unselected package libproj25:armhf. 258s Preparing to unpack .../040-libproj25_9.4.1-1_armhf.deb ... 258s Unpacking libproj25:armhf (9.4.1-1) ... 258s Selecting previously unselected package libgeotiff5:armhf. 258s Preparing to unpack .../041-libgeotiff5_1.7.3-1_armhf.deb ... 258s Unpacking libgeotiff5:armhf (1.7.3-1) ... 258s Selecting previously unselected package libgif7:armhf. 258s Preparing to unpack .../042-libgif7_5.2.2-1ubuntu1_armhf.deb ... 258s Unpacking libgif7:armhf (5.2.2-1ubuntu1) ... 258s Selecting previously unselected package libsz2:armhf. 258s Preparing to unpack .../043-libsz2_1.1.3-1_armhf.deb ... 258s Unpacking libsz2:armhf (1.1.3-1) ... 258s Selecting previously unselected package libhdf4-0-alt:armhf. 258s Preparing to unpack .../044-libhdf4-0-alt_4.3.0-1_armhf.deb ... 258s Unpacking libhdf4-0-alt:armhf (4.3.0-1) ... 258s Selecting previously unselected package libhdf5-103-1t64:armhf. 258s Preparing to unpack .../045-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_armhf.deb ... 258s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 258s Selecting previously unselected package libheif-plugin-aomdec:armhf. 258s Preparing to unpack .../046-libheif-plugin-aomdec_1.18.1-2_armhf.deb ... 258s Unpacking libheif-plugin-aomdec:armhf (1.18.1-2) ... 258s Selecting previously unselected package libheif-plugin-libde265:armhf. 258s Preparing to unpack .../047-libheif-plugin-libde265_1.18.1-2_armhf.deb ... 258s Unpacking libheif-plugin-libde265:armhf (1.18.1-2) ... 258s Selecting previously unselected package libheif1:armhf. 258s Preparing to unpack .../048-libheif1_1.18.1-2_armhf.deb ... 258s Unpacking libheif1:armhf (1.18.1-2) ... 258s Selecting previously unselected package liburiparser1:armhf. 258s Preparing to unpack .../049-liburiparser1_0.9.8+dfsg-1_armhf.deb ... 258s Unpacking liburiparser1:armhf (0.9.8+dfsg-1) ... 258s Selecting previously unselected package libkmlbase1t64:armhf. 258s Preparing to unpack .../050-libkmlbase1t64_1.3.0-12build1_armhf.deb ... 258s Unpacking libkmlbase1t64:armhf (1.3.0-12build1) ... 258s Selecting previously unselected package libkmldom1t64:armhf. 258s Preparing to unpack .../051-libkmldom1t64_1.3.0-12build1_armhf.deb ... 258s Unpacking libkmldom1t64:armhf (1.3.0-12build1) ... 258s Selecting previously unselected package libkmlengine1t64:armhf. 258s Preparing to unpack .../052-libkmlengine1t64_1.3.0-12build1_armhf.deb ... 258s Unpacking libkmlengine1t64:armhf (1.3.0-12build1) ... 258s Selecting previously unselected package mysql-common. 258s Preparing to unpack .../053-mysql-common_5.8+1.1.1_all.deb ... 258s Unpacking mysql-common (5.8+1.1.1) ... 258s Selecting previously unselected package libmysqlclient21:armhf. 258s Preparing to unpack .../054-libmysqlclient21_8.0.39-1_armhf.deb ... 258s Unpacking libmysqlclient21:armhf (8.0.39-1) ... 258s Selecting previously unselected package libhdf5-hl-100t64:armhf. 258s Preparing to unpack .../055-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_armhf.deb ... 258s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 258s Selecting previously unselected package libnetcdf19t64:armhf. 258s Preparing to unpack .../056-libnetcdf19t64_1%3a4.9.2-6ubuntu1_armhf.deb ... 258s Unpacking libnetcdf19t64:armhf (1:4.9.2-6ubuntu1) ... 258s Selecting previously unselected package libltdl7:armhf. 258s Preparing to unpack .../057-libltdl7_2.4.7-7build1_armhf.deb ... 258s Unpacking libltdl7:armhf (2.4.7-7build1) ... 258s Selecting previously unselected package libodbc2:armhf. 258s Preparing to unpack .../058-libodbc2_2.3.12-1ubuntu1_armhf.deb ... 258s Unpacking libodbc2:armhf (2.3.12-1ubuntu1) ... 259s Selecting previously unselected package unixodbc-common. 259s Preparing to unpack .../059-unixodbc-common_2.3.12-1ubuntu1_all.deb ... 259s Unpacking unixodbc-common (2.3.12-1ubuntu1) ... 259s Selecting previously unselected package libodbcinst2:armhf. 259s Preparing to unpack .../060-libodbcinst2_2.3.12-1ubuntu1_armhf.deb ... 259s Unpacking libodbcinst2:armhf (2.3.12-1ubuntu1) ... 259s Selecting previously unselected package libogdi4.1:armhf. 259s Preparing to unpack .../061-libogdi4.1_4.1.1+ds-5_armhf.deb ... 259s Unpacking libogdi4.1:armhf (4.1.1+ds-5) ... 259s Selecting previously unselected package libopenjp2-7:armhf. 259s Preparing to unpack .../062-libopenjp2-7_2.5.0-2ubuntu1_armhf.deb ... 259s Unpacking libopenjp2-7:armhf (2.5.0-2ubuntu1) ... 259s Selecting previously unselected package liblcms2-2:armhf. 259s Preparing to unpack .../063-liblcms2-2_2.14-2build1_armhf.deb ... 259s Unpacking liblcms2-2:armhf (2.14-2build1) ... 259s Selecting previously unselected package libpoppler140:armhf. 259s Preparing to unpack .../064-libpoppler140_24.08.0-1_armhf.deb ... 259s Unpacking libpoppler140:armhf (24.08.0-1) ... 259s Selecting previously unselected package libpq5:armhf. 259s Preparing to unpack .../065-libpq5_17.0-1_armhf.deb ... 259s Unpacking libpq5:armhf (17.0-1) ... 259s Selecting previously unselected package libqhull-r8.0:armhf. 259s Preparing to unpack .../066-libqhull-r8.0_2020.2-6build1_armhf.deb ... 259s Unpacking libqhull-r8.0:armhf (2020.2-6build1) ... 259s Selecting previously unselected package librttopo1:armhf. 259s Preparing to unpack .../067-librttopo1_1.1.0-3build2_armhf.deb ... 259s Unpacking librttopo1:armhf (1.1.0-3build2) ... 259s Selecting previously unselected package libspatialite8t64:armhf. 259s Preparing to unpack .../068-libspatialite8t64_5.1.0-3build1_armhf.deb ... 259s Unpacking libspatialite8t64:armhf (5.1.0-3build1) ... 259s Selecting previously unselected package libxerces-c3.2t64:armhf. 259s Preparing to unpack .../069-libxerces-c3.2t64_3.2.4+debian-1.3_armhf.deb ... 259s Unpacking libxerces-c3.2t64:armhf (3.2.4+debian-1.3) ... 259s Selecting previously unselected package libgdal35:armhf. 259s Preparing to unpack .../070-libgdal35_3.9.1+dfsg-1build2_armhf.deb ... 259s Unpacking libgdal35:armhf (3.9.1+dfsg-1build2) ... 259s Selecting previously unselected package libgomp1:armhf. 259s Preparing to unpack .../071-libgomp1_14.2.0-7ubuntu1_armhf.deb ... 259s Unpacking libgomp1:armhf (14.2.0-7ubuntu1) ... 259s Selecting previously unselected package libgraphite2-3:armhf. 259s Preparing to unpack .../072-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 259s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 259s Selecting previously unselected package libharfbuzz0b:armhf. 259s Preparing to unpack .../073-libharfbuzz0b_9.0.0-1_armhf.deb ... 259s Unpacking libharfbuzz0b:armhf (9.0.0-1) ... 259s Selecting previously unselected package x11-common. 259s Preparing to unpack .../074-x11-common_1%3a7.7+23ubuntu3_all.deb ... 259s Unpacking x11-common (1:7.7+23ubuntu3) ... 260s Selecting previously unselected package libice6:armhf. 260s Preparing to unpack .../075-libice6_2%3a1.0.10-1build3_armhf.deb ... 260s Unpacking libice6:armhf (2:1.0.10-1build3) ... 260s Selecting previously unselected package libthai-data. 260s Preparing to unpack .../076-libthai-data_0.1.29-2build1_all.deb ... 260s Unpacking libthai-data (0.1.29-2build1) ... 260s Selecting previously unselected package libthai0:armhf. 260s Preparing to unpack .../077-libthai0_0.1.29-2build1_armhf.deb ... 260s Unpacking libthai0:armhf (0.1.29-2build1) ... 260s Selecting previously unselected package libpango-1.0-0:armhf. 260s Preparing to unpack .../078-libpango-1.0-0_1.54.0+ds-2_armhf.deb ... 260s Unpacking libpango-1.0-0:armhf (1.54.0+ds-2) ... 260s Selecting previously unselected package libpangoft2-1.0-0:armhf. 260s Preparing to unpack .../079-libpangoft2-1.0-0_1.54.0+ds-2_armhf.deb ... 260s Unpacking libpangoft2-1.0-0:armhf (1.54.0+ds-2) ... 260s Selecting previously unselected package libpangocairo-1.0-0:armhf. 260s Preparing to unpack .../080-libpangocairo-1.0-0_1.54.0+ds-2_armhf.deb ... 260s Unpacking libpangocairo-1.0-0:armhf (1.54.0+ds-2) ... 260s Selecting previously unselected package libpaper1:armhf. 260s Preparing to unpack .../081-libpaper1_1.1.29build1_armhf.deb ... 260s Unpacking libpaper1:armhf (1.1.29build1) ... 260s Selecting previously unselected package libpaper-utils. 260s Preparing to unpack .../082-libpaper-utils_1.1.29build1_armhf.deb ... 260s Unpacking libpaper-utils (1.1.29build1) ... 260s Selecting previously unselected package libsm6:armhf. 260s Preparing to unpack .../083-libsm6_2%3a1.2.3-1build3_armhf.deb ... 260s Unpacking libsm6:armhf (2:1.2.3-1build3) ... 260s Selecting previously unselected package libtcl8.6:armhf. 260s Preparing to unpack .../084-libtcl8.6_8.6.14+dfsg-1build1_armhf.deb ... 260s Unpacking libtcl8.6:armhf (8.6.14+dfsg-1build1) ... 260s Selecting previously unselected package libxft2:armhf. 260s Preparing to unpack .../085-libxft2_2.3.6-1build1_armhf.deb ... 260s Unpacking libxft2:armhf (2.3.6-1build1) ... 260s Selecting previously unselected package libxss1:armhf. 260s Preparing to unpack .../086-libxss1_1%3a1.2.3-1build3_armhf.deb ... 260s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 260s Selecting previously unselected package libtk8.6:armhf. 260s Preparing to unpack .../087-libtk8.6_8.6.14-1build1_armhf.deb ... 260s Unpacking libtk8.6:armhf (8.6.14-1build1) ... 260s Selecting previously unselected package libudunits2-data. 260s Preparing to unpack .../088-libudunits2-data_2.2.28-7build1_all.deb ... 260s Unpacking libudunits2-data (2.2.28-7build1) ... 260s Selecting previously unselected package libudunits2-0. 260s Preparing to unpack .../089-libudunits2-0_2.2.28-7build1_armhf.deb ... 260s Unpacking libudunits2-0 (2.2.28-7build1) ... 260s Selecting previously unselected package libxt6t64:armhf. 260s Preparing to unpack .../090-libxt6t64_1%3a1.2.1-1.2build1_armhf.deb ... 260s Unpacking libxt6t64:armhf (1:1.2.1-1.2build1) ... 260s Selecting previously unselected package zip. 260s Preparing to unpack .../091-zip_3.0-14_armhf.deb ... 260s Unpacking zip (3.0-14) ... 261s Selecting previously unselected package unzip. 261s Preparing to unpack .../092-unzip_6.0-28ubuntu6_armhf.deb ... 261s Unpacking unzip (6.0-28ubuntu6) ... 261s Selecting previously unselected package xdg-utils. 261s Preparing to unpack .../093-xdg-utils_1.2.1-0ubuntu1_all.deb ... 261s Unpacking xdg-utils (1.2.1-0ubuntu1) ... 261s Selecting previously unselected package r-base-core. 261s Preparing to unpack .../094-r-base-core_4.4.1-1_armhf.deb ... 261s Unpacking r-base-core (4.4.1-1) ... 261s Selecting previously unselected package r-cran-littler. 261s Preparing to unpack .../095-r-cran-littler_0.3.20-1_armhf.deb ... 261s Unpacking r-cran-littler (0.3.20-1) ... 261s Selecting previously unselected package littler. 261s Preparing to unpack .../096-littler_0.3.20-1_all.deb ... 261s Unpacking littler (0.3.20-1) ... 261s Selecting previously unselected package r-cran-abind. 261s Preparing to unpack .../097-r-cran-abind_1.4-5-2_all.deb ... 261s Unpacking r-cran-abind (1.4-5-2) ... 261s Selecting previously unselected package r-cran-mass. 261s Preparing to unpack .../098-r-cran-mass_7.3-61-1_armhf.deb ... 261s Unpacking r-cran-mass (7.3-61-1) ... 261s Selecting previously unselected package r-cran-class. 261s Preparing to unpack .../099-r-cran-class_7.3-22-2build1_armhf.deb ... 261s Unpacking r-cran-class (7.3-22-2build1) ... 261s Selecting previously unselected package r-cran-proxy. 261s Preparing to unpack .../100-r-cran-proxy_0.4-27-1_armhf.deb ... 261s Unpacking r-cran-proxy (0.4-27-1) ... 262s Selecting previously unselected package r-cran-e1071. 262s Preparing to unpack .../101-r-cran-e1071_1.7-14-1_armhf.deb ... 262s Unpacking r-cran-e1071 (1.7-14-1) ... 262s Selecting previously unselected package r-cran-kernsmooth. 262s Preparing to unpack .../102-r-cran-kernsmooth_2.23-24-1_armhf.deb ... 262s Unpacking r-cran-kernsmooth (2.23-24-1) ... 262s Selecting previously unselected package r-cran-classint. 262s Preparing to unpack .../103-r-cran-classint_0.4-10+dfsg-1_armhf.deb ... 262s Unpacking r-cran-classint (0.4-10+dfsg-1) ... 262s Selecting previously unselected package r-cran-codetools. 262s Preparing to unpack .../104-r-cran-codetools_0.2-20-1_all.deb ... 262s Unpacking r-cran-codetools (0.2-20-1) ... 262s Selecting previously unselected package r-cran-dbi. 262s Preparing to unpack .../105-r-cran-dbi_1.2.3-1_all.deb ... 262s Unpacking r-cran-dbi (1.2.3-1) ... 262s Selecting previously unselected package r-cran-digest. 262s Preparing to unpack .../106-r-cran-digest_0.6.36-1_armhf.deb ... 262s Unpacking r-cran-digest (0.6.36-1) ... 262s Selecting previously unselected package r-cran-dotcall64. 262s Preparing to unpack .../107-r-cran-dotcall64_1.1-1-1_armhf.deb ... 262s Unpacking r-cran-dotcall64 (1.1-1-1) ... 262s Selecting previously unselected package r-cran-pkgkitten. 262s Preparing to unpack .../108-r-cran-pkgkitten_0.2.4-1_all.deb ... 262s Unpacking r-cran-pkgkitten (0.2.4-1) ... 262s Selecting previously unselected package r-cran-rcpp. 262s Preparing to unpack .../109-r-cran-rcpp_1.0.13-1_armhf.deb ... 262s Unpacking r-cran-rcpp (1.0.13-1) ... 262s Selecting previously unselected package r-cran-spam. 262s Preparing to unpack .../110-r-cran-spam_2.10-0-1_armhf.deb ... 262s Unpacking r-cran-spam (2.10-0-1) ... 262s Selecting previously unselected package r-cran-viridislite. 262s Preparing to unpack .../111-r-cran-viridislite_0.4.2-2_all.deb ... 262s Unpacking r-cran-viridislite (0.4.2-2) ... 262s Selecting previously unselected package r-cran-maps. 262s Preparing to unpack .../112-r-cran-maps_3.4.2-1_armhf.deb ... 262s Unpacking r-cran-maps (3.4.2-1) ... 262s Selecting previously unselected package r-cran-fields. 262s Preparing to unpack .../113-r-cran-fields_16.2-1_armhf.deb ... 262s Unpacking r-cran-fields (16.2-1) ... 262s Selecting previously unselected package r-cran-fnn. 262s Preparing to unpack .../114-r-cran-fnn_1.1.4-1_armhf.deb ... 262s Unpacking r-cran-fnn (1.1.4-1) ... 262s Selecting previously unselected package r-cran-globals. 262s Preparing to unpack .../115-r-cran-globals_0.16.3-1_all.deb ... 262s Unpacking r-cran-globals (0.16.3-1) ... 262s Selecting previously unselected package r-cran-listenv. 262s Preparing to unpack .../116-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 262s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 262s Selecting previously unselected package r-cran-parallelly. 262s Preparing to unpack .../117-r-cran-parallelly_1.37.1-1build1_armhf.deb ... 262s Unpacking r-cran-parallelly (1.37.1-1build1) ... 263s Selecting previously unselected package r-cran-future. 263s Preparing to unpack .../118-r-cran-future_1.33.1+dfsg-1_all.deb ... 263s Unpacking r-cran-future (1.33.1+dfsg-1) ... 263s Selecting previously unselected package r-cran-future.apply. 263s Preparing to unpack .../119-r-cran-future.apply_1.11.2+dfsg-1_all.deb ... 263s Unpacking r-cran-future.apply (1.11.2+dfsg-1) ... 263s Selecting previously unselected package r-cran-lattice. 263s Preparing to unpack .../120-r-cran-lattice_0.22-6-1_armhf.deb ... 263s Unpacking r-cran-lattice (0.22-6-1) ... 263s Selecting previously unselected package r-cran-sp. 263s Preparing to unpack .../121-r-cran-sp_1%3a2.1-2+dfsg-1_armhf.deb ... 263s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ... 263s Selecting previously unselected package r-cran-zoo. 263s Preparing to unpack .../122-r-cran-zoo_1.8-12-2_armhf.deb ... 263s Unpacking r-cran-zoo (1.8-12-2) ... 263s Selecting previously unselected package r-cran-magrittr. 263s Preparing to unpack .../123-r-cran-magrittr_2.0.3-1_armhf.deb ... 263s Unpacking r-cran-magrittr (2.0.3-1) ... 263s Selecting previously unselected package r-cran-wk. 263s Preparing to unpack .../124-r-cran-wk_0.9.1-1_armhf.deb ... 263s Unpacking r-cran-wk (0.9.1-1) ... 263s Selecting 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r-cran-sf (1.0-17+dfsg-1) ... 268s Setting up r-cran-stars (0.6-6-1) ... 268s Setting up r-cran-sftime (0.2-0-6) ... 268s Setting up r-cran-gstat (2.1-1-2) ... 268s Setting up r-cran-raster (3.6-26-1) ... 268s Setting up autopkgtest-satdep (0) ... 268s Processing triggers for libc-bin (2.40-1ubuntu3) ... 268s Processing triggers for man-db (2.12.1-3) ... 269s Processing triggers for install-info (7.1.1-1) ... 294s (Reading database ... 66088 files and directories currently installed.) 294s Removing autopkgtest-satdep (0) ... 300s autopkgtest [21:34:47]: test run-unit-test: [----------------------- 302s BEGIN TEST allier.R 302s 302s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 302s Copyright (C) 2024 The R Foundation for Statistical Computing 302s Platform: arm-unknown-linux-gnueabihf (32-bit) 302s 302s R is free software and comes with ABSOLUTELY NO WARRANTY. 302s You are welcome to redistribute it under certain conditions. 302s Type 'license()' or 'licence()' for distribution details. 302s 302s R is a collaborative project with many contributors. 302s Type 'contributors()' for more information and 302s 'citation()' on how to cite R or R packages in publications. 302s 302s Type 'demo()' for some demos, 'help()' for on-line help, or 302s 'help.start()' for an HTML browser interface to help. 302s Type 'q()' to quit R. 302s 302s > # Sytze de Bruin's post to r-sig-geo, Nov 16, 2015: 302s > library(sp) 302s > library(gstat) 303s > 303s > # some data 303s > x <- c(215, 330, 410, 470, 545) 303s > y <- c(230, 310, 330, 340, 365) 303s > fc <- c(0.211, 0.251, 0.281, 0.262, 0.242) 303s > por <- c(0.438, 0.457, 0.419, 0.430, 0.468) 303s > Allier <- data.frame(x, y, fc, por) 303s > coordinates(Allier) = ~x+y 303s > 303s > # gstat object for co-kriging using linear model of co-regionalization 303s > g <- gstat(id=c("fc"), formula=fc~1, data=Allier, 303s + model=vgm(0.00247, "Sph", 480, 0.00166)) 303s > g <- gstat(g, id="por", formula=por~1, data=Allier, 303s + model=vgm(0.00239, "Sph", 480, 0.00118)) 303s > g <- gstat(g, id=c("fc", "por"), 303s + model=vgm(0.00151, "Sph", 480, -0.00124)) 303s > 303s > # predict at single point 303s > g$set = list(choleski = 0) # LDL' 303s > A <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 303s Linear Model of Coregionalization found. Good. 303s [using ordinary cokriging] 303s we're at location X: 450 Y: 350 Z: 0 303s zero block size 303s we're at point X: 450 Y: 350 Z: 0 303s 303s # X: 303s #Matrix: 10 by 2 303s rbind( 303s c( 1.000000, 0.000000), # row 1 303s c( 1.000000, 0.000000), # row 2 303s c( 1.000000, 0.000000), # row 3 303s c( 1.000000, 0.000000), # row 4 303s c( 1.000000, 0.000000), # row 5 303s c( 0.000000, 1.000000), # row 6 303s c( 0.000000, 1.000000), # row 7 303s c( 0.000000, 1.000000), # row 8 303s c( 0.000000, 1.000000), # row 9 303s c( 0.000000, 1.000000) # row 10 303s ) 303s [using generalized covariances: max_val - semivariance()] 303s # Covariances (x_i, x_j) matrix C (upper triangle): 303s #Matrix: 10 by 10 303s rbind( 303s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 303s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 303s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 303s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 303s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 303s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 303s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 303s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 303s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 303s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 303s ) 303s 303s # glm->C, LDL' decomposed:: 303s #Matrix: 10 by 10 303s rbind( 303s c( 0.003399, 0.372269, 0.208612, 0.127967, 0.016746, -0.025847, 0.223862, 0.148767, 0.104047, 0.038371), # row 1 303s c( 0.000000, 0.002661, 0.483725, 0.327484, 0.153742, 0.233021, -0.125118, 0.262410, 0.219271, 0.150536), # row 2 303s c( 0.000000, 0.000000, 0.002276, 0.540203, 0.303585, 0.058071, 0.314376, -0.175899, 0.295181, 0.243817), # row 3 303s c( 0.000000, 0.000000, 0.000000, 0.002484, 0.483068, 0.000301, 0.115816, 0.377362, -0.115338, 0.319418), # row 4 303s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.003690, -0.038142, 0.000474, 0.120915, 0.377730, 0.075630), # row 5 303s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003019, 0.354325, 0.235465, 0.164684, 0.060733), # row 6 303s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002623, 0.415337, 0.347059, 0.238266), # row 7 303s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002458, 0.467207, 0.385909), # row 8 303s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002658, 0.505569), # row 9 303s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003570) # row 10 303s ) 303s 303s # X'C-1 X: 303s #Matrix: 2 by 2 303s rbind( 303s c(665.433994, -232.313340), # row 1 303s c(-232.313340, 729.440848) # row 2 303s ) 303s 303s # beta: 303s #Vector: dim: 2 303s c( 0.244216, 0.440933) 303s # Cov(beta), (X'C-1 X)-1: 303s #Matrix: 2 by 2 303s rbind( 303s c( 0.001691, 0.000538), # row 1 303s c( 0.000538, 0.001542) # row 2 303s ) 303s 303s # Corr(beta): 303s #Matrix: 2 by 2 303s rbind( 303s c( 1.000000, 0.333447), # row 1 303s c( 0.333447, 1.000000) # row 2 303s ) 303s 303s # X0 (X values at prediction location x0): 303s #Matrix: 2 by 2 303s rbind( 303s c( 1.000000, 0.000000), # row 1 303s c( 0.000000, 1.000000) # row 2 303s ) 303s 303s # BLUE(mu), E(y(x0)) = X0'beta: 303s #Vector: dim: 2 303s c( 0.244216, 0.440933) 303s # Covariances (x_i, x_0), C0: 303s #Matrix: 10 by 2 303s rbind( 303s c( 0.000638, 0.000390), # row 1 303s c( 0.001516, 0.000927), # row 2 303s c( 0.002126, 0.001300), # row 3 303s c( 0.002298, 0.001405), # row 4 303s c( 0.001738, 0.001062), # row 5 303s c( 0.000390, 0.000618), # row 6 303s c( 0.000927, 0.001467), # row 7 303s c( 0.001300, 0.002057), # row 8 303s c( 0.001405, 0.002223), # row 9 303s c( 0.001062, 0.001681) # row 10 303s ) 303s 303s # C-1 C0: 303s #Matrix: 10 by 2 303s rbind( 303s c( 0.008927, -0.017995), # row 1 303s c( 0.061935, -0.028550), # row 2 303s c( 0.225195, 0.078344), # row 3 303s c( 0.356735, 0.190177), # row 4 303s c( 0.094128, -0.023136), # row 5 303s c(-0.021119, 0.004935), # row 6 303s c(-0.033508, 0.055601), # row 7 303s c( 0.091947, 0.242576), # row 8 303s c( 0.223200, 0.398927), # row 9 303s c(-0.027153, 0.088995) # row 10 303s ) 303s 303s # [a] Cov_ij(B,B) or Cov_ij(0,0): 303s #Matrix: 2 by 2 303s rbind( 303s c( 0.004130, 0.000270), # row 1 303s c( 0.000270, 0.003570) # row 2 303s ) 303s 303s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 303s #Matrix: 2 by 2 303s rbind( 303s c( 0.000129, -0.000107), # row 1 303s c(-0.000107, 0.000089) # row 2 303s ) 303s 303s # [b] c0'C-1 c0: 303s #Matrix: 2 by 2 303s rbind( 303s c( 0.001926, 0.001532), # row 1 303s c( 0.001532, 0.001931) # row 2 303s ) 303s 303s # Best Linear Unbiased Predictor: 303s #Vector: dim: 2 303s c( 0.253090, 0.441258) 303s # MSPE ([a]-[b]+[c]): 303s #Matrix: 2 by 2 303s rbind( 303s c( 0.002332, -0.001369), # row 1 303s c(-0.001369, 0.001729) # row 2 303s ) 303s 303s # kriging weights: 303s #Matrix: 10 by 2 303s rbind( 303s c( 0.071177, -0.064988), # row 1 303s c( 0.108451, -0.066123), # row 2 303s c( 0.268160, 0.043141), # row 3 303s c( 0.401959, 0.153312), # row 4 303s c( 0.150253, -0.065342), # row 5 303s c(-0.076273, 0.056759), # row 6 303s c(-0.077605, 0.093781), # row 7 303s c( 0.050632, 0.277731), # row 8 303s c( 0.179933, 0.435972), # row 9 303s c(-0.076688, 0.135756) # row 10 303s ) 303s 303s 303s > g$set = list(choleski = 1) # Choleski 303s > B <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 303s Linear Model of Coregionalization found. Good. 303s [using ordinary cokriging] 303s we're at location X: 450 Y: 350 Z: 0 303s zero block size 303s we're at point X: 450 Y: 350 Z: 0 303s 303s # X: 303s #Matrix: 10 by 2 303s rbind( 303s c( 1.000000, 0.000000), # row 1 303s c( 1.000000, 0.000000), # row 2 303s c( 1.000000, 0.000000), # row 3 303s c( 1.000000, 0.000000), # row 4 303s c( 1.000000, 0.000000), # row 5 303s c( 0.000000, 1.000000), # row 6 303s c( 0.000000, 1.000000), # row 7 303s c( 0.000000, 1.000000), # row 8 303s c( 0.000000, 1.000000), # row 9 303s c( 0.000000, 1.000000) # row 10 303s ) 303s [using generalized covariances: max_val - semivariance()] 303s # Covariances (x_i, x_j) matrix C (upper triangle): 303s #Matrix: 10 by 10 303s rbind( 303s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 303s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 303s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 303s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 303s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 303s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 303s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 303s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 303s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 303s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 303s ) 303s 303s # glm->C, Choleski decomposed:: 303s #Matrix: 10 by 10 303s rbind( 303s c( 0.064265, 0.022086, 0.013942, 0.008801, 0.003487, 0.004201, 0.013502, 0.008523, 0.005380, 0.002132), # row 1 303s c( 0.000000, 0.060351, 0.025382, 0.019938, 0.013290, 0.012840, -0.000468, 0.015517, 0.012189, 0.008125), # row 2 303s c( 0.000000, 0.000000, 0.057370, 0.023954, 0.018091, 0.002846, 0.016530, -0.004230, 0.014644, 0.011059), # row 3 303s c( 0.000000, 0.000000, 0.000000, 0.055509, 0.020471, -0.000277, 0.006286, 0.016960, -0.006686, 0.012514), # row 4 303s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.056523, -0.001665, 0.001218, 0.006437, 0.014711, -0.005337), # row 5 303s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.058108, 0.022018, 0.011347, 0.006008, 0.001147), # row 6 303s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.050877, 0.027084, 0.018381, 0.010720), # row 7 303s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.045247, 0.026914, 0.017658), # row 8 303s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.042645, 0.023811), # row 9 303s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.046872) # row 10 303s ) 303s 303s # X'C-1 X: 303s #Matrix: 2 by 2 303s rbind( 303s c(665.433994, -232.313340), # row 1 303s c(-232.313340, 729.440848) # row 2 303s ) 303s 303s # beta: 303s #Vector: dim: 2 303s c( 0.244216, 0.440933) 303s # Cov(beta), (X'C-1 X)-1: 303s #Matrix: 2 by 2 303s rbind( 303s c( 0.001691, 0.000538), # row 1 303s c( 0.000538, 0.001542) # row 2 303s ) 303s 303s # Corr(beta): 303s #Matrix: 2 by 2 303s rbind( 303s c( 1.000000, 0.333447), # row 1 303s c( 0.333447, 1.000000) # row 2 303s ) 303s 303s # X0 (X values at prediction location x0): 303s #Matrix: 2 by 2 303s rbind( 303s c( 1.000000, 0.000000), # row 1 303s c( 0.000000, 1.000000) # row 2 303s ) 303s 303s # BLUE(mu), E(y(x0)) = X0'beta: 303s #Vector: dim: 2 303s c( 0.244216, 0.440933) 303s # Covariances (x_i, x_0), C0: 303s #Matrix: 10 by 2 303s rbind( 303s c( 0.000638, 0.000390), # row 1 303s c( 0.001516, 0.000927), # row 2 303s c( 0.002126, 0.001300), # row 3 303s c( 0.002298, 0.001405), # row 4 303s c( 0.001738, 0.001062), # row 5 303s c( 0.000390, 0.000618), # row 6 303s c( 0.000927, 0.001467), # row 7 303s c( 0.001300, 0.002057), # row 8 303s c( 0.001405, 0.002223), # row 9 303s c( 0.001062, 0.001681) # row 10 303s ) 303s 303s # C-1 C0: 303s #Matrix: 10 by 2 303s rbind( 303s c( 0.008927, -0.017995), # row 1 303s c( 0.061935, -0.028550), # row 2 303s c( 0.225195, 0.078344), # row 3 303s c( 0.356735, 0.190177), # row 4 303s c( 0.094128, -0.023136), # row 5 303s c(-0.021119, 0.004935), # row 6 303s c(-0.033508, 0.055601), # row 7 303s c( 0.091947, 0.242576), # row 8 303s c( 0.223200, 0.398927), # row 9 303s c(-0.027153, 0.088995) # row 10 303s ) 303s 303s # [a] Cov_ij(B,B) or Cov_ij(0,0): 303s #Matrix: 2 by 2 303s rbind( 303s c( 0.004130, 0.000270), # row 1 303s c( 0.000270, 0.003570) # row 2 303s ) 303s 303s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 303s #Matrix: 2 by 2 303s rbind( 303s c( 0.000129, -0.000107), # row 1 303s c(-0.000107, 0.000089) # row 2 303s ) 303s 303s # [b] c0'C-1 c0: 303s #Matrix: 2 by 2 303s rbind( 303s c( 0.001926, 0.001532), # row 1 303s c( 0.001532, 0.001931) # row 2 303s ) 303s 303s # Best Linear Unbiased Predictor: 303s #Vector: dim: 2 303s c( 0.253090, 0.441258) 303s # MSPE ([a]-[b]+[c]): 303s #Matrix: 2 by 2 303s rbind( 303s c( 0.002332, -0.001369), # row 1 303s c(-0.001369, 0.001729) # row 2 303s ) 303s 303s # kriging weights: 303s #Matrix: 10 by 2 303s rbind( 303s c( 0.071177, -0.064988), # row 1 303s c( 0.108451, -0.066123), # row 2 303s c( 0.268160, 0.043141), # row 3 303s c( 0.401959, 0.153312), # row 4 303s c( 0.150253, -0.065342), # row 5 303s c(-0.076273, 0.056759), # row 6 303s c(-0.077605, 0.093781), # row 7 303s c( 0.050632, 0.277731), # row 8 303s c( 0.179933, 0.435972), # row 9 303s c(-0.076688, 0.135756) # row 10 303s ) 303s 303s 303s > all.equal(A,B) 303s [1] TRUE 303s > 303s > # TRUE 303s > 303s BEGIN TEST blockkr.R 303s 303s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 303s Copyright (C) 2024 The R Foundation for Statistical Computing 303s Platform: arm-unknown-linux-gnueabihf (32-bit) 303s 303s R is free software and comes with ABSOLUTELY NO WARRANTY. 303s You are welcome to redistribute it under certain conditions. 303s Type 'license()' or 'licence()' for distribution details. 303s 303s R is a collaborative project with many contributors. 303s Type 'contributors()' for more information and 303s 'citation()' on how to cite R or R packages in publications. 303s 303s Type 'demo()' for some demos, 'help()' for on-line help, or 303s 'help.start()' for an HTML browser interface to help. 303s Type 'q()' to quit R. 303s 303s > library(sp) 304s > data(meuse) 304s > coordinates(meuse) = c("x", "y") 304s > new.locs <- SpatialPoints(data.frame( 304s + x = c(181170, 180310, 180205, 178673, 178770, 178270), 304s + y = c(333250, 332189, 331707, 330066, 330675, 331075))) 304s > library(gstat) 304s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 304s + block = c(40,40), nmax = 40) 304s [using ordinary kriging] 304s coordinates var1.pred var1.var 304s 1 (181170, 333250) 268.7576 19447.67 304s 2 (180310, 332189) 663.4915 16991.33 304s 3 (180205, 331707) 251.4606 21579.71 304s 4 (178673, 330066) 532.5776 73807.91 304s 5 (178770, 330675) 664.4039 23589.17 304s 6 (178270, 331075) 565.5436 155113.23 304s > 304s > new.locs <- SpatialPoints(data.frame(x = c(181170), y = c(333250))) 304s > 304s > disc = c(-15,-5,5,15) 304s > block.irreg <- data.frame(expand.grid(x = disc, y = disc)) 304s > block.irreg 304s x y 304s 1 -15 -15 304s 2 -5 -15 304s 3 5 -15 304s 4 15 -15 304s 5 -15 -5 304s 6 -5 -5 304s 7 5 -5 304s 8 15 -5 304s 9 -15 5 304s 10 -5 5 304s 11 5 5 304s 12 15 5 304s 13 -15 15 304s 14 -5 15 304s 15 5 15 304s 16 15 15 304s > 304s > # first disable default Gaussian quadrature used for block integration, by 304s > # setting nblockdiscr explicitly: 304s > krige(zinc ~ 1, meuse, new.locs, model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 304s + block = c(40,40), nmax = 40, set = list(nblockdiscr=4)) 305s [using ordinary kriging] 305s coordinates var1.pred var1.var 305s 1 (181170, 333250) 268.7324 19568.76 305s > # now pass the same block discretization as block.irreg: 305s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 305s + block = block.irreg, nmax = 40) 305s [using ordinary kriging] 305s coordinates var1.pred var1.var 305s 1 (181170, 333250) 268.7324 19568.76 305s > # check weights argument: 305s > block.irreg <- data.frame(expand.grid(x = disc, y = disc), weights = rep(1/16, 16)) 305s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 305s + block = block.irreg, nmax = 40) 305s [using ordinary kriging] 305s coordinates var1.pred var1.var 305s 1 (181170, 333250) 268.7324 19568.76 305s > 305s BEGIN TEST covtable.R 305s 305s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 305s Copyright (C) 2024 The R Foundation for Statistical Computing 305s Platform: arm-unknown-linux-gnueabihf (32-bit) 305s 305s R is free software and comes with ABSOLUTELY NO WARRANTY. 305s You are welcome to redistribute it under certain conditions. 305s Type 'license()' or 'licence()' for distribution details. 305s 305s R is a collaborative project with many contributors. 305s Type 'contributors()' for more information and 305s 'citation()' on how to cite R or R packages in publications. 305s 305s Type 'demo()' for some demos, 'help()' for on-line help, or 305s 'help.start()' for an HTML browser interface to help. 305s Type 'q()' to quit R. 305s 305s > library(gstat) 306s > d=expand.grid(x=c(-.5,.5), y=c(-.5,.5)) 306s > d$z=1:4 306s > vv=vgm(model = "Tab", covtable = 306s + variogramLine(vgm(1, "Sph", 1), 1, n=1e4,min = 0, covariance = TRUE)) 306s > vv 306s model psill maxdist 306s 1 Tab NA 1 306s covariance table: 306s [1] 1.0000000 0.7039712 0.4319496 0.2080384 0.0560108 0.0000000 306s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vgm(1, "Sph", 1)) 307s [using ordinary kriging] 307s x y var1.pred var1.var 307s 1 0 0 2.5 1.017767 307s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vv) 307s [using ordinary kriging] 307s x y var1.pred var1.var 307s 1 0 0 2.5 1.017863 307s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vgm(1, "Sph", 1)) 307s [using ordinary kriging] 307s x y var1.pred var1.var 307s 1 0 0 1.5 1.267767 307s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vv) 307s [using ordinary kriging] 307s x y var1.pred var1.var 307s 1 0 0 1.5 1.267863 307s > 307s BEGIN TEST cv.R 307s 307s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 307s Copyright (C) 2024 The R Foundation for Statistical Computing 307s Platform: arm-unknown-linux-gnueabihf (32-bit) 307s 307s R is free software and comes with ABSOLUTELY NO WARRANTY. 307s You are welcome to redistribute it under certain conditions. 307s Type 'license()' or 'licence()' for distribution details. 307s 307s R is a collaborative project with many contributors. 307s Type 'contributors()' for more information and 307s 'citation()' on how to cite R or R packages in publications. 307s 307s Type 'demo()' for some demos, 'help()' for on-line help, or 307s 'help.start()' for an HTML browser interface to help. 307s Type 'q()' to quit R. 307s 307s > # try bivariate cokriging; cross validate first variable 307s > library(sp) 307s > data(meuse) 307s > library(gstat) 307s > g=gstat(NULL, "log-zinc", log(zinc)~1, ~x+y, meuse, nmax=10) 307s > g=gstat(g, "log-lead", log(lead)~1, ~x+y, meuse, nmax=10) 308s > g=gstat(g, "log-copper", log(copper)~1, ~x+y, meuse, nmax=10) 308s > v=variogram(g) 308s > g=gstat(g, model=vgm(1, "Sph", 1000), fill.all=T) 308s > g=fit.lmc(v, g) 308s > g 308s data: 308s log-zinc : formula = log(zinc)`~`1 ; data dim = 155 x 12 nmax = 10 308s log-lead : formula = log(lead)`~`1 ; data dim = 155 x 12 nmax = 10 308s log-copper : formula = log(copper)`~`1 ; data dim = 155 x 12 nmax = 10 308s variograms: 308s model psill range 308s log-zinc Sph 0.7132435 1000 308s log-lead Sph 0.6133020 1000 308s log-copper Sph 0.3634211 1000 308s log-zinc.log-lead Sph 0.6367012 1000 308s log-zinc.log-copper Sph 0.4570044 1000 308s log-lead.log-copper Sph 0.3934910 1000 308s ~x + y 308s > set.seed(13131) 308s > summary(gstat.cv(g, remove.all=TRUE, nfold=5)) 308s Intrinsic Correlation found. Good. 308s [using ordinary cokriging] 308s Intrinsic Correlation found. Good. 308s [using ordinary cokriging] 308s Intrinsic Correlation found. Good. 308s [using ordinary cokriging] 308s Intrinsic Correlation found. Good. 308s [using ordinary cokriging] 308s Intrinsic Correlation found. Good. 308s [using ordinary cokriging] 308s log.zinc.pred log.zinc.var observed residual 308s Min. :4.779 Min. :0.05426 Min. :4.727 Min. :-1.317697 308s 1st Qu.:5.396 1st Qu.:0.10872 1st Qu.:5.288 1st Qu.:-0.230224 308s Median :5.858 Median :0.13745 Median :5.787 Median :-0.034374 308s Mean :5.895 Mean :0.15249 Mean :5.886 Mean :-0.009094 308s 3rd Qu.:6.367 3rd Qu.:0.18303 3rd Qu.:6.514 3rd Qu.: 0.244075 308s Max. :7.358 Max. :0.60571 Max. :7.517 Max. : 1.414147 308s zscore fold x y 308s Min. :-3.35764 Min. :1.000 Min. :178605 Min. :329714 308s 1st Qu.:-0.58683 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 308s Median :-0.10755 Median :3.000 Median :179991 Median :331633 308s Mean :-0.02766 Mean :2.852 Mean :180005 Mean :331635 308s 3rd Qu.: 0.70691 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 308s Max. : 3.43370 Max. :5.000 Max. :181390 Max. :333611 308s > summary(gstat.cv(g, remove.all=FALSE, nfold=5)) 308s Warning message: 308s In checkNames(value) : 308s attempt to set invalid names: this may lead to problems later on. See ?make.names 308s Intrinsic Correlation found. Good. 308s [using ordinary cokriging] 308s Intrinsic Correlation found. Good. 308s [using ordinary cokriging] 308s Intrinsic Correlation found. Good. 308s [using ordinary cokriging] 308s Intrinsic Correlation found. Good. 308s [using ordinary cokriging] 308s Intrinsic Correlation found. Good. 308s [using ordinary cokriging] 308s Warning message: 308s In checkNames(value) : 308s attempt to set invalid names: this may lead to problems later on. See ?make.names 308s log.zinc.pred log.zinc.var observed residual 308s Min. :4.644 Min. :0.002371 Min. :4.727 Min. :-0.4190977 308s 1st Qu.:5.308 1st Qu.:0.004975 1st Qu.:5.288 1st Qu.:-0.0773273 308s Median :5.777 Median :0.005875 Median :5.787 Median : 0.0006165 308s Mean :5.883 Mean :0.006609 Mean :5.886 Mean : 0.0026164 308s 3rd Qu.:6.422 3rd Qu.:0.007419 3rd Qu.:6.514 3rd Qu.: 0.0825770 308s Max. :7.676 Max. :0.027247 Max. :7.517 Max. : 0.4659503 308s zscore fold x y 308s Min. :-4.793253 Min. :1.000 Min. :178605 Min. :329714 308s 1st Qu.:-1.080725 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 308s Median : 0.007242 Median :3.000 Median :179991 Median :331633 308s Mean : 0.050487 Mean :2.974 Mean :180005 Mean :331635 308s 3rd Qu.: 1.117469 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 308s Max. : 6.475831 Max. :5.000 Max. :181390 Max. :333611 308s > 308s BEGIN TEST cv3d.R 308s 308s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 308s Copyright (C) 2024 The R Foundation for Statistical Computing 308s Platform: arm-unknown-linux-gnueabihf (32-bit) 308s 308s R is free software and comes with ABSOLUTELY NO WARRANTY. 308s You are welcome to redistribute it under certain conditions. 308s Type 'license()' or 'licence()' for distribution details. 308s 308s R is a collaborative project with many contributors. 308s Type 'contributors()' for more information and 308s 'citation()' on how to cite R or R packages in publications. 308s 308s Type 'demo()' for some demos, 'help()' for on-line help, or 308s 'help.start()' for an HTML browser interface to help. 308s Type 'q()' to quit R. 308s 308s > options(digits = 4) 308s > set.seed(1131) 308s > d = data.frame(x=runif(50),y=runif(50),z=runif(50),v=rnorm(50)) 308s > library(gstat) 309s > xx = krige.cv(v~1,~x+y+z,d,model=vgm(1,"Exp",1), verbose=F, set=list(debug=0)) 310s > summary(xx) 310s var1.pred var1.var observed residual 310s Min. :-1.163 Min. :0.116 Min. :-2.240 Min. :-2.1755 310s 1st Qu.:-0.571 1st Qu.:0.175 1st Qu.:-0.876 1st Qu.:-0.7881 310s Median :-0.201 Median :0.192 Median :-0.219 Median : 0.1175 310s Mean :-0.165 Mean :0.208 Mean :-0.142 Mean : 0.0233 310s 3rd Qu.: 0.161 3rd Qu.:0.240 3rd Qu.: 0.500 3rd Qu.: 0.8508 310s Max. : 1.085 Max. :0.426 Max. : 1.857 Max. : 2.5224 310s zscore fold x y 310s Min. :-5.168 Min. : 1.0 Min. :0.0068 Min. :0.0034 310s 1st Qu.:-1.875 1st Qu.:13.2 1st Qu.:0.2397 1st Qu.:0.2466 310s Median : 0.245 Median :25.5 Median :0.4867 Median :0.4525 310s Mean : 0.017 Mean :25.5 Mean :0.4997 Mean :0.4969 310s 3rd Qu.: 2.020 3rd Qu.:37.8 3rd Qu.:0.7473 3rd Qu.:0.7394 310s Max. : 7.354 Max. :50.0 Max. :0.9875 Max. :0.9872 310s z 310s Min. :0.0016 310s 1st Qu.:0.1865 310s Median :0.4485 310s Mean :0.4714 310s 3rd Qu.:0.7240 310s Max. :0.9942 310s > 310s BEGIN TEST fit.R 310s 310s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 310s Copyright (C) 2024 The R Foundation for Statistical Computing 310s Platform: arm-unknown-linux-gnueabihf (32-bit) 310s 310s R is free software and comes with ABSOLUTELY NO WARRANTY. 310s You are welcome to redistribute it under certain conditions. 310s Type 'license()' or 'licence()' for distribution details. 310s 310s R is a collaborative project with many contributors. 310s Type 'contributors()' for more information and 310s 'citation()' on how to cite R or R packages in publications. 310s 310s Type 'demo()' for some demos, 'help()' for on-line help, or 310s 'help.start()' for an HTML browser interface to help. 310s Type 'q()' to quit R. 310s 310s > library(sp) 310s > data(meuse) 310s > library(gstat) 311s > v=variogram(log(zinc)~1,~x+y,meuse,cutoff=500,wi=100) 312s > v$gamma=c(0.5,1,2,3,3) 312s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=TRUE) 312s model psill range 312s 1 Nug 0.000000 0.00 312s 2 Sph 7.878195 1567.77 312s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=FALSE) 312s Warning message: 312s In fit.variogram(v, vgm(1, "Sph", 300, 0), warn.if.neg = TRUE) : 312s partial sill or nugget fixed at zero value 312s model psill range 312s 1 Nug 0.000000 0.00 312s 2 Sph 7.878195 1567.77 312s > 312s BEGIN TEST krige0.R 312s 312s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 312s Copyright (C) 2024 The R Foundation for Statistical Computing 312s Platform: arm-unknown-linux-gnueabihf (32-bit) 312s 312s R is free software and comes with ABSOLUTELY NO WARRANTY. 312s You are welcome to redistribute it under certain conditions. 312s Type 'license()' or 'licence()' for distribution details. 312s 312s R is a collaborative project with many contributors. 312s Type 'contributors()' for more information and 312s 'citation()' on how to cite R or R packages in publications. 312s 312s Type 'demo()' for some demos, 'help()' for on-line help, or 312s 'help.start()' for an HTML browser interface to help. 312s Type 'q()' to quit R. 312s 312s > # test -- load data: 312s > library(sp) 312s > data(meuse) 312s > coordinates(meuse) = ~x+y 312s > data(meuse.grid) 312s > gridded(meuse.grid) = ~x+y 313s > 313s > library(gstat) 313s > # test -- idw 313s > meuse.grid$idw <- idw0(zinc~1, meuse, meuse.grid)[,1] 313s > x <- idw(zinc~1, meuse, meuse.grid) 313s [inverse distance weighted interpolation] 313s > all.equal(x$var1.pred, meuse.grid$idw) 313s [1] TRUE 313s > spplot(meuse.grid["idw"],col.regions=bpy.colors()) 313s > v = vgm(1, "Exp", 500) 313s > # test sk: 313s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, beta = 500, computeVar = TRUE) 314s > rownames(x0$pred)=NULL 314s > x <- krige(zinc~1, meuse, meuse.grid, v, beta = 500) 314s [using simple kriging] 314s > all.equal(x$var1.pred, x0$pred[,1]) 314s [1] TRUE 314s > all.equal(x$var1.var, x0$var) 314s [1] TRUE 314s > # test ok: 314s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, computeVar = TRUE) 314s > rownames(x0$pred)=NULL 314s > names(x0$var)=NULL 314s > x <- krige(zinc~1, meuse, meuse.grid, v) 314s [using ordinary kriging] 314s > all.equal(x$var1.pred, x0$pred[,1]) 314s [1] TRUE 314s > all.equal(x$var1.var, x0$var) 314s [1] TRUE 314s > # test uk: 314s > x0 <- krige0(zinc~sqrt(dist), meuse, meuse.grid, v, computeVar = TRUE) 315s > rownames(x0$pred)=NULL 315s > names(x0$var)=NULL 315s > x <- krige(zinc~sqrt(dist), meuse, meuse.grid, v) 315s [using universal kriging] 315s > all.equal(x$var1.pred, x0$pred[,1]) 315s [1] TRUE 315s > all.equal(x$var1.var, x0$var) 315s [1] TRUE 315s > 315s BEGIN TEST line.R 315s 315s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 315s Copyright (C) 2024 The R Foundation for Statistical Computing 315s Platform: arm-unknown-linux-gnueabihf (32-bit) 315s 315s R is free software and comes with ABSOLUTELY NO WARRANTY. 315s You are welcome to redistribute it under certain conditions. 315s Type 'license()' or 'licence()' for distribution details. 315s 315s R is a collaborative project with many contributors. 315s Type 'contributors()' for more information and 315s 'citation()' on how to cite R or R packages in publications. 315s 315s Type 'demo()' for some demos, 'help()' for on-line help, or 315s 'help.start()' for an HTML browser interface to help. 315s Type 'q()' to quit R. 315s 315s > options(digits=5) 315s > library(sp) 315s > data(meuse.grid) 315s > gridded(meuse.grid) = ~x+y 316s > data(meuse) 316s > coordinates(meuse) = ~x+y 316s > 316s > # choose arbitrary line over the grid: 316s > image(meuse.grid["dist"],axes=T) 316s > pp = rbind(c(180000,331000),c(180000,332000),c(181000,333500)) 316s > Sl = SpatialLines(list(Lines(list(Line(pp)), "a"))) 316s > plot(Sl,add=T,col='green') 316s > 316s > # use the default spsample arguments of predict.gstat: 316s > pts=spsample(Sl,n=500,'regular',offset=c(.5,.5)) 316s > plot(pts, pch=3, cex=.2, add=T) 316s > 316s > library(gstat) 316s > v = vgm(.6, "Sph", 900, .06) 316s > out1 = krige(log(zinc)~1, meuse, Sl, v) 316s [using ordinary kriging] 316s > out1 316s An object of class "SpatialLinesDataFrame" 316s Slot "data": 316s x y var1.pred var1.var 316s a 180333 332167 6.1618 0.008025 316s 316s Slot "lines": 316s [[1]] 316s An object of class "Lines" 316s Slot "Lines": 316s [[1]] 316s An object of class "Line" 316s Slot "coords": 316s [,1] [,2] 316s [1,] 180000 331000 316s [2,] 180000 332000 316s [3,] 181000 333500 316s 316s 316s 316s Slot "ID": 316s [1] "a" 316s 316s 316s 316s Slot "bbox": 316s min max 316s x 180000 181000 316s y 331000 333500 316s 316s Slot "proj4string": 316s Coordinate Reference System: 316s Deprecated Proj.4 representation: NA 316s 316s > 316s > points(180333,332167,pch=3,cex=2) 316s > 316s > # use the same line as block discretization, and predict for (0,0) 316s > # (because the block discretizing points are not centered) 316s > out2 = krige(log(zinc)~1, meuse, SpatialPoints(matrix(0,1,2)), v, block=coordinates(pts)) 316s [using ordinary kriging] 316s > out2 316s coordinates var1.pred var1.var 316s 1 (0, 0) 6.1618 0.008025 316s > 316s > compare.krigingLines = function(formula, data, newdata, model) { 316s + out1 = krige(formula, data, newdata, model) 316s + pts = spsample(newdata, n=500, 'regular', offset=.5) 316s + out2 = krige(formula, data, SpatialPoints(matrix(0,1,2)), model, block = coordinates(pts)) 316s + print("difference:") 316s + as.data.frame(out1)[3:4]- as.data.frame(out2)[3:4] 316s + } 316s > 316s > compare.krigingLines(log(zinc)~1, meuse, Sl, v) 316s [using ordinary kriging] 316s [using ordinary kriging] 316s [1] "difference:" 316s var1.pred var1.var 316s a 0 0 316s > 316s > # one line, consisting of two line segments: 316s > pp2 = rbind(c(181000,333500),c(181000,332500)) 316s > Sl2 = SpatialLines(list(Lines(list(Line(pp),Line(pp2)), "a"))) 316s > krige(log(zinc)~1, meuse, Sl2, v) 316s [using ordinary kriging] 316s An object of class "SpatialLinesDataFrame" 316s Slot "data": 316s x y var1.pred var1.var 316s a 180667 332583 6.0424 0.0053191 316s 316s Slot "lines": 316s [[1]] 316s An object of class "Lines" 316s Slot "Lines": 316s [[1]] 316s An object of class "Line" 316s Slot "coords": 316s [,1] [,2] 316s [1,] 180000 331000 316s [2,] 180000 332000 316s [3,] 181000 333500 316s 316s 316s [[2]] 316s An object of class "Line" 316s Slot "coords": 316s [,1] [,2] 316s [1,] 181000 333500 316s [2,] 181000 332500 316s 316s 316s 316s Slot "ID": 316s [1] "a" 316s 316s 316s 316s Slot "bbox": 316s min max 316s x 180000 181000 316s y 331000 333500 316s 316s Slot "proj4string": 316s Coordinate Reference System: 316s Deprecated Proj.4 representation: NA 316s 316s > compare.krigingLines(log(zinc)~1, meuse, Sl2, v) 316s [using ordinary kriging] 316s [using ordinary kriging] 316s [1] "difference:" 316s var1.pred var1.var 316s a 0 0 316s > 316s > # two seperate line segments: 316s > Sl3 = SpatialLines(list(Lines(list(Line(pp)), "a"),Lines(list(Line(pp2)),"b"))) 316s > krige(log(zinc)~1, meuse, Sl3, v) 316s [using ordinary kriging] 316s An object of class "SpatialLinesDataFrame" 316s Slot "data": 316s x y var1.pred var1.var 316s a 180333 332167 6.1618 0.008025 316s b 181000 333000 5.7060 0.011043 316s 316s Slot "lines": 316s [[1]] 316s An object of class "Lines" 316s Slot "Lines": 316s [[1]] 316s An object of class "Line" 316s Slot "coords": 316s [,1] [,2] 316s [1,] 180000 331000 316s [2,] 180000 332000 316s [3,] 181000 333500 316s 316s 316s 316s Slot "ID": 316s [1] "a" 316s 316s 316s [[2]] 316s An object of class "Lines" 316s Slot "Lines": 316s [[1]] 316s An object of class "Line" 316s Slot "coords": 316s [,1] [,2] 316s [1,] 181000 333500 316s [2,] 181000 332500 316s 316s 316s 316s Slot "ID": 316s [1] "b" 316s 316s 316s 316s Slot "bbox": 316s min max 316s x 180000 181000 316s y 331000 333500 316s 316s Slot "proj4string": 316s Coordinate Reference System: 316s Deprecated Proj.4 representation: NA 316s 316s > 316s BEGIN TEST merge.R 316s 316s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 316s Copyright (C) 2024 The R Foundation for Statistical Computing 316s Platform: arm-unknown-linux-gnueabihf (32-bit) 316s 316s R is free software and comes with ABSOLUTELY NO WARRANTY. 316s You are welcome to redistribute it under certain conditions. 316s Type 'license()' or 'licence()' for distribution details. 316s 316s R is a collaborative project with many contributors. 316s Type 'contributors()' for more information and 316s 'citation()' on how to cite R or R packages in publications. 316s 316s Type 'demo()' for some demos, 'help()' for on-line help, or 316s 'help.start()' for an HTML browser interface to help. 316s Type 'q()' to quit R. 316s 317s > options(digits=6) 317s > # illustrates the use of merge, for merging parameters accross variables: 317s > # Z1=m+e1(s) 317s > # Z2=m+e2(s) 317s > # Z1 and Z2 each have a different variogram, but share the parameter m 317s > # see documentation of gstat() function 317s > library(gstat) 317s > d1 = data.frame(x=c(0,2),y=c(0,0),z=c(0,1)) 317s > d2 = data.frame(x=c(0,2),y=c(2,2),z=c(4,5)) 317s > g = gstat(NULL,"d1", z~1,~x+y,d1,model=vgm(1, "Exp", 1)) 317s > g = gstat(g,"d2", z~1,~x+y,d2,model=vgm(1, "Exp", 1), merge=c("d1","d2")) 317s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 317s > predict(g, data.frame(x=1,y=1), debug = 32) 318s Intrinsic Correlation found. Good. 318s [using ordinary cokriging] 318s we're at location X: 1 Y: 1 Z: 0 318s zero block size 318s we're at point X: 1 Y: 1 Z: 0 318s 318s # X: 318s #Matrix: 4 by 1 318s rbind( 318s c( 1.000000), # row 1 318s c( 1.000000), # row 2 318s c( 1.000000), # row 3 318s c( 1.000000) # row 4 318s ) 318s [using generalized covariances: max_val - semivariance()] 318s # Covariances (x_i, x_j) matrix C (upper triangle): 318s #Matrix: 4 by 4 318s rbind( 318s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 318s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 318s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 318s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 318s ) 318s 318s # glm->C, Choleski decomposed:: 318s #Matrix: 4 by 4 318s rbind( 318s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 318s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 318s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 318s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 318s ) 318s 318s # X'C-1 X: 318s #Matrix: 1 by 1 318s rbind( 318s c( 3.245289) # row 1 318s ) 318s 318s # beta: 318s #Vector: dim: 1 318s c( 2.500000) 318s # Cov(beta), (X'C-1 X)-1: 318s #Matrix: 1 by 1 318s rbind( 318s c( 0.308139) # row 1 318s ) 318s 318s # Corr(beta): 318s #Matrix: 1 by 1 318s rbind( 318s c( 1.000000) # row 1 318s ) 318s 318s # X0 (X values at prediction location x0): 318s #Matrix: 1 by 2 318s rbind( 318s c( 1.000000, 1.000000) # row 1 318s ) 318s 318s # BLUE(mu), E(y(x0)) = X0'beta: 318s #Vector: dim: 2 318s c( 2.500000, 2.500000) 318s # Covariances (x_i, x_0), C0: 318s #Matrix: 4 by 2 318s rbind( 318s c( 0.243117, 0.121558), # row 1 318s c( 0.243117, 0.121558), # row 2 318s c( 0.121558, 0.243117), # row 3 318s c( 0.121558, 0.243117) # row 4 318s ) 318s 318s # C-1 C0: 318s #Matrix: 4 by 2 318s rbind( 318s c( 0.206482, 0.089387), # row 1 318s c( 0.206482, 0.089387), # row 2 318s c( 0.089387, 0.206482), # row 3 318s c( 0.089387, 0.206482) # row 4 318s ) 318s 318s # [a] Cov_ij(B,B) or Cov_ij(0,0): 318s #Matrix: 2 by 2 318s rbind( 318s c( 1.000000, 0.500000), # row 1 318s c( 0.500000, 1.000000) # row 2 318s ) 318s 318s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 318s #Matrix: 2 by 2 318s rbind( 318s c( 0.051360, 0.051360), # row 1 318s c( 0.051360, 0.051360) # row 2 318s ) 318s 318s # [b] c0'C-1 c0: 318s #Matrix: 2 by 2 318s rbind( 318s c( 0.122130, 0.093662), # row 1 318s c( 0.093662, 0.122130) # row 2 318s ) 318s 318s # Best Linear Unbiased Predictor: 318s #Vector: dim: 2 318s c( 2.031619, 2.968381) 318s # MSPE ([a]-[b]+[c]): 318s #Matrix: 2 by 2 318s rbind( 318s c( 0.929230, 0.457698), # row 1 318s c( 0.457698, 0.929230) # row 2 318s ) 318s 318s # kriging weights: 318s #Matrix: 4 by 2 318s rbind( 318s c( 0.308548, 0.191452), # row 1 318s c( 0.308548, 0.191452), # row 2 318s c( 0.191452, 0.308548), # row 3 318s c( 0.191452, 0.308548) # row 4 318s ) 318s 318s 318s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 318s 1 1 1 2.03162 0.92923 2.96838 0.92923 0.457698 318s > 318s > # Z1 and Z2 share a regression slope: 318s > g = gstat(NULL,"d1", z~x,~x+y,d1,model=vgm(1, "Exp", 1)) 318s > g = gstat(g,"d2", z~x,~x+y,d2,model=vgm(1, "Exp", 1), 318s + merge=list(c("d1",2,"d2",2))) 318s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 318s > predict(g, data.frame(x=1,y=1), debug = 32) 318s Intrinsic Correlation found. Good. 318s [using universal cokriging] 318s we're at location X: 1 Y: 1 Z: 0 318s zero block size 318s we're at point X: 1 Y: 1 Z: 0 318s 318s # X: 318s #Matrix: 4 by 3 318s rbind( 318s c( 1.000000, 0.000000, 0.000000), # row 1 318s c( 1.000000, 2.000000, 0.000000), # row 2 318s c( 0.000000, 0.000000, 1.000000), # row 3 318s c( 0.000000, 2.000000, 1.000000) # row 4 318s ) 318s [using generalized covariances: max_val - semivariance()] 318s # Covariances (x_i, x_j) matrix C (upper triangle): 318s #Matrix: 4 by 4 318s rbind( 318s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 318s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 318s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 318s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 318s ) 318s 318s # glm->C, Choleski decomposed:: 318s #Matrix: 4 by 4 318s rbind( 318s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 318s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 318s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 318s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 318s ) 318s 318s # X'C-1 X: 318s #Matrix: 3 by 3 318s rbind( 318s c( 1.774607, 1.622645, -0.151962), # row 1 318s c( 1.622645, 7.676050, 1.622645), # row 2 318s c(-0.151962, 1.622645, 1.774607) # row 3 318s ) 318s 318s # beta: 318s #Vector: dim: 3 318s c( 0.000000, 0.500000, 4.000000) 318s # Cov(beta), (X'C-1 X)-1: 318s #Matrix: 3 by 3 318s rbind( 318s c( 0.793363, -0.225695, 0.274305), # row 1 318s c(-0.225695, 0.225695, -0.225695), # row 2 318s c( 0.274305, -0.225695, 0.793363) # row 3 318s ) 318s 318s # Corr(beta): 318s #Matrix: 3 by 3 318s rbind( 318s c( 1.000000, -0.533366, 0.345750), # row 1 318s c(-0.533366, 1.000000, -0.533366), # row 2 318s c( 0.345750, -0.533366, 1.000000) # row 3 318s ) 318s 318s # X0 (X values at prediction location x0): 318s #Matrix: 3 by 2 318s rbind( 318s c( 1.000000, 0.000000), # row 1 318s c( 1.000000, 1.000000), # row 2 318s c( 0.000000, 1.000000) # row 3 318s ) 318s 318s # BLUE(mu), E(y(x0)) = X0'beta: 318s #Vector: dim: 2 318s c( 0.500000, 4.500000) 318s # Covariances (x_i, x_0), C0: 318s #Matrix: 4 by 2 318s rbind( 318s c( 0.243117, 0.121558), # row 1 318s c( 0.243117, 0.121558), # row 2 318s c( 0.121558, 0.243117), # row 3 318s c( 0.121558, 0.243117) # row 4 318s ) 318s 318s # C-1 C0: 318s #Matrix: 4 by 2 318s rbind( 318s c( 0.206482, 0.089387), # row 1 318s c( 0.206482, 0.089387), # row 2 318s c( 0.089387, 0.206482), # row 3 318s c( 0.089387, 0.206482) # row 4 318s ) 318s 318s # [a] Cov_ij(B,B) or Cov_ij(0,0): 318s #Matrix: 2 by 2 318s rbind( 318s c( 1.000000, 0.500000), # row 1 318s c( 0.500000, 1.000000) # row 2 318s ) 318s 318s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 318s #Matrix: 2 by 2 318s rbind( 318s c( 0.203564, -0.100844), # row 1 318s c(-0.100844, 0.203564) # row 2 318s ) 318s 318s # [b] c0'C-1 c0: 318s #Matrix: 2 by 2 318s rbind( 318s c( 0.122130, 0.093662), # row 1 318s c( 0.093662, 0.122130) # row 2 318s ) 318s 318s # Best Linear Unbiased Predictor: 318s #Vector: dim: 2 318s c( 0.500000, 4.500000) 318s # MSPE ([a]-[b]+[c]): 318s #Matrix: 2 by 2 318s rbind( 318s c( 1.081434, 0.305494), # row 1 318s c( 0.305494, 1.081434) # row 2 318s ) 318s 318s # kriging weights: 318s #Matrix: 4 by 2 318s rbind( 318s c( 0.500000, 0.000000), # row 1 318s c( 0.500000, 0.000000), # row 2 318s c( 0.000000, 0.500000), # row 3 318s c( 0.000000, 0.500000) # row 4 318s ) 318s 318s 318s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 318s 1 1 1 0.5 1.08143 4.5 1.08143 0.305494 318s > 318s BEGIN TEST na.action.R 318s 318s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 318s Copyright (C) 2024 The R Foundation for Statistical Computing 318s Platform: arm-unknown-linux-gnueabihf (32-bit) 318s 318s R is free software and comes with ABSOLUTELY NO WARRANTY. 318s You are welcome to redistribute it under certain conditions. 318s Type 'license()' or 'licence()' for distribution details. 318s 318s R is a collaborative project with many contributors. 318s Type 'contributors()' for more information and 318s 'citation()' on how to cite R or R packages in publications. 318s 318s Type 'demo()' for some demos, 'help()' for on-line help, or 318s 'help.start()' for an HTML browser interface to help. 318s Type 'q()' to quit R. 318s 318s > library(sp) 318s > 318s > data(meuse) 318s > data(meuse.grid) 318s > 318s > set.seed(13131) # reproduce results 318s > 318s > # select 10 random rows; 318s > # create two missing values in the coordinates: 318s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 318s > m[c(2,8), "x"] = NA 318s > 318s > library(gstat) 318s > ## this is not allowed anymore: 318s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.pass)) 318s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.omit)) 318s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 318s missing values in object 318s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.exclude)) 318s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 318s missing values in object 318s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 318s missing values in object 318s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.fail)) 318s > 318s > # select 10 random rows; 318s > # create two missing values in the regressor variable: 318s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 318s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 318s missing values in object 318s > m[c(3,7), "dist"] = NA 318s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.pass) 319s [ordinary or weighted least squares prediction] 319s x y var1.pred var1.var 319s 1 178860 330860 6.530134 0.2415196 319s 2 180260 331860 5.389567 0.2406041 319s 3 180100 331860 NA NA 319s 4 180460 331820 5.213370 0.2417197 319s 5 179660 330580 5.550859 0.2398778 319s 6 179740 330300 6.108648 0.2395392 319s 7 180220 330660 NA NA 319s 8 178580 329820 6.533801 0.2415453 319s 9 180100 331900 5.580264 0.2397758 319s 10 180780 331900 5.095967 0.2426499 319s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.omit) 319s [ordinary or weighted least squares prediction] 319s x y var1.pred var1.var 319s 1877 178860 330860 6.530134 0.2415196 319s 1015 180260 331860 5.389567 0.2406041 319s 1056 180460 331820 5.213370 0.2417197 319s 2199 179660 330580 5.550859 0.2398778 319s 2556 179740 330300 6.108648 0.2395392 319s 2985 178580 329820 6.533801 0.2415453 319s 975 180100 331900 5.580264 0.2397758 319s 992 180780 331900 5.095967 0.2426499 319s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.exclude) 319s [ordinary or weighted least squares prediction] 319s x y var1.pred var1.var 319s 1877 178860 330860 6.530134 0.2415196 319s 1015 180260 331860 5.389567 0.2406041 319s 1056 180460 331820 5.213370 0.2417197 319s 2199 179660 330580 5.550859 0.2398778 319s 2556 179740 330300 6.108648 0.2395392 319s 2985 178580 329820 6.533801 0.2415453 319s 975 180100 331900 5.580264 0.2397758 319s 992 180780 331900 5.095967 0.2426499 319s > try(krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.fail)) 319s Error in na.fail.default(structure(list(dist = c(0.00135803, 0.423804, : 319s missing values in object 319s > 319s BEGIN TEST rings.R 319s 319s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 319s Copyright (C) 2024 The R Foundation for Statistical Computing 319s Platform: arm-unknown-linux-gnueabihf (32-bit) 319s 319s R is free software and comes with ABSOLUTELY NO WARRANTY. 319s You are welcome to redistribute it under certain conditions. 319s Type 'license()' or 'licence()' for distribution details. 319s 319s R is a collaborative project with many contributors. 319s Type 'contributors()' for more information and 319s 'citation()' on how to cite R or R packages in publications. 319s 319s Type 'demo()' for some demos, 'help()' for on-line help, or 319s 'help.start()' for an HTML browser interface to help. 319s Type 'q()' to quit R. 319s 319s > library(sp) 319s > library(gstat) 320s > set.seed(13331) 320s > 320s > x = runif(10) 320s > y = runif(10) 320s > z = rnorm(10) 320s > d = data.frame(x=x,y=y,z=z) 320s > bl = c(1,1) 320s > 320s > nd = data.frame(x=.5, y=.5) 320s > 320s > # single block: 320s > library(sp) 320s > coordinates(d) = ~x+y 320s > nd = SpatialPoints(nd) 320s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 320s + set = list(nb=4)) 321s [using ordinary kriging] 321s > 321s > ring = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 321s > r1 = SpatialPolygons(list(Polygons(list(Polygon(ring)), ID = "xx"))) 321s > a = data.frame(a = 1, b = 2) 321s > rownames(a) = "xx" 321s > r1df = SpatialPolygonsDataFrame(r1, a) 321s > 321s > g = gstat(formula=z~1, data=d, model=vgm(1, "Exp", 1)) 321s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 321s > yy = predict(g, r1df, block = bl, sps.args = args) 321s [using ordinary kriging] 321s > 321s > xx = as.data.frame(xx) 321s > yy = as.data.frame(yy) 321s > row.names(xx) = row.names(yy) 321s > print(all.equal(xx,yy)) 321s [1] TRUE 321s > 321s > ## multiple blocks of equal size: 321s > nd = data.frame(x= 0:4 + .5, y=rep(.5,5)) 321s > nd = SpatialPoints(nd) 321s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 321s + set = list(nb=4)) 321s [using ordinary kriging] 321s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 321s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 321s > ring2 = cbind(c(2+0,2+bl[1],2+bl[1],2+0,2+0), c(0,0,bl[2],bl[2],0)) 321s > ring3 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 321s > ring4 = cbind(c(4+0,4+bl[1],4+bl[1],4+0,4+0), c(0,0,bl[2],bl[2],0)) 321s > r1 = SpatialPolygons(list( 321s + Polygons(list(Polygon(ring0)), ID = "x0"), 321s + Polygons(list(Polygon(ring1)), ID = "x1"), 321s + Polygons(list(Polygon(ring2)), ID = "x2"), 321s + Polygons(list(Polygon(ring3)), ID = "x3"), 321s + Polygons(list(Polygon(ring4)), ID = "x4") 321s + )) 321s > df = data.frame(a=rep(1,5), b= rep(1,5)) 321s > rownames(df) = c("x0", "x1", "x2", "x3", "x4") 321s > r1df = SpatialPolygonsDataFrame(r1, df) 321s > 321s > yy = predict(g, r1, block = bl, sps.args = args) 321s [using ordinary kriging] 321s > xx = as.data.frame(xx) 321s > yy = as.data.frame(yy) 321s > row.names(xx) = row.names(yy) 321s > all.equal(xx, yy) 321s [1] TRUE 321s > 321s > ## multiple blocks of equal size: 321s > args = list(type = "regular", cellsize=.25, offset=c(0.5,0.5), n=16) 321s > yy = predict(g, r1, block = bl, sps.args = args) 321s [using ordinary kriging] 321s > xx = as.data.frame(xx) 321s > yy = as.data.frame(yy) 321s > row.names(xx) = row.names(yy) 321s > print(all.equal(xx, yy)) 321s [1] TRUE 321s > 321s > ## multiple blocks of varying size: 321s > nd = data.frame(x=c(0.5, 2, 4.5), y=c(0.5, 1, 1.5)) 321s > nd = SpatialPoints(nd) 321s > bl = c(1,1) 321s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 321s > xx1 = krige(z~1, d, nd[1], model=vgm(1, "Exp", 1), block = bl, 321s + set = list(nb=4)) 321s [using ordinary kriging] 321s > bl = c(2,2) 321s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 321s > xx2 = krige(z~1, d, nd[2], model=vgm(1, "Exp", 1), block = bl, 321s + set = list(nb=4)) 321s [using ordinary kriging] 321s > bl = c(3,3) 321s > ring2 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 321s > xx3 = krige(z~1, d, nd[3], model=vgm(1, "Exp", 1), block = bl, 321s + set = list(nb=4)) 321s [using ordinary kriging] 321s > r1 = SpatialPolygons(list( 321s + Polygons(list(Polygon(ring0)), ID = "x0"), 321s + Polygons(list(Polygon(ring1)), ID = "x1"), 321s + Polygons(list(Polygon(ring2)), ID = "x2") 321s + )) 321s > df = data.frame(a = rep(1,3), b = rep(1,3)) 321s > rownames(df) = c("x0", "x1", "x2") 321s > r1df = SpatialPolygonsDataFrame(r1, df) 321s > 321s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 321s > yy = predict(g, r1df, block = bl, sps.args = args) 321s [using ordinary kriging] 321s > xx = rbind(as.data.frame(xx1), as.data.frame(xx2), as.data.frame(xx3)) 321s > row.names(xx) = 1:3 321s > xx = as.data.frame(xx) 321s > yy = as.data.frame(yy) 321s > row.names(xx) = row.names(yy) 321s > print(all.equal(xx, yy)) 321s [1] TRUE 321s > 321s BEGIN TEST sim.R 321s 321s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 321s Copyright (C) 2024 The R Foundation for Statistical Computing 321s Platform: arm-unknown-linux-gnueabihf (32-bit) 321s 321s R is free software and comes with ABSOLUTELY NO WARRANTY. 321s You are welcome to redistribute it under certain conditions. 321s Type 'license()' or 'licence()' for distribution details. 321s 321s R is a collaborative project with many contributors. 321s Type 'contributors()' for more information and 321s 'citation()' on how to cite R or R packages in publications. 321s 321s Type 'demo()' for some demos, 'help()' for on-line help, or 321s 'help.start()' for an HTML browser interface to help. 321s Type 'q()' to quit R. 321s 321s > options(digits=6) 321s > library(sp) 321s > data(meuse) 321s > set.seed(158229572) 321s > new.locs <- data.frame(x = c(181170, 180310, 180205, 178673, 178770, 178270), 321s + y = c(333250, 332189, 331707, 330066, 330675, 331075)) 321s > library(gstat) 322s > krige(zinc ~ 1, ~ x + y, meuse, newdata = new.locs, 322s + model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 322s + block = c(40,40), nmax = 40, nsim = 10) 323s drawing 10 GLS realisations of beta... 323s [using conditional Gaussian simulation] 323s x y sim1 sim2 sim3 sim4 sim5 sim6 sim7 323s 1 181170 333250 267.385 27.5686 428.144 381.576 151.119 175.890 293.273 323s 2 180310 332189 429.437 659.6579 564.023 611.666 612.756 619.791 771.961 323s 3 180205 331707 205.978 412.7276 271.827 380.349 169.488 369.822 266.026 323s 4 178673 330066 117.479 684.0663 399.148 585.096 606.396 867.866 807.634 323s 5 178770 330675 780.072 837.4628 682.690 911.052 600.984 783.019 749.476 323s 6 178270 331075 1025.778 1582.0269 614.235 332.377 660.228 589.447 972.018 323s sim8 sim9 sim10 323s 1 294.107 113.347 279.991 323s 2 776.498 724.160 901.692 323s 3 338.021 630.244 140.272 323s 4 127.301 957.242 444.007 323s 5 533.773 748.144 623.960 323s 6 1084.170 537.604 -214.972 323s > 323s BEGIN TEST stars.R 323s 323s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 323s Copyright (C) 2024 The R Foundation for Statistical Computing 323s Platform: arm-unknown-linux-gnueabihf (32-bit) 323s 323s R is free software and comes with ABSOLUTELY NO WARRANTY. 323s You are welcome to redistribute it under certain conditions. 323s Type 'license()' or 'licence()' for distribution details. 323s 323s R is a collaborative project with many contributors. 323s Type 'contributors()' for more information and 323s 'citation()' on how to cite R or R packages in publications. 323s 323s Type 'demo()' for some demos, 'help()' for on-line help, or 323s 'help.start()' for an HTML browser interface to help. 323s Type 'q()' to quit R. 323s 323s > Sys.setenv(TZ = "UTC") 323s > 323s > # 0. using sp: 323s > 323s > suppressPackageStartupMessages(library(sp)) 323s > demo(meuse, ask = FALSE) 323s 323s 323s demo(meuse) 323s ---- ~~~~~ 323s 323s > require(sp) 323s 323s > crs = CRS("EPSG:28992") 324s 324s > data("meuse") 324s 324s > coordinates(meuse) <- ~x+y 324s 324s > proj4string(meuse) <- crs 324s 324s > data("meuse.grid") 324s 324s > coordinates(meuse.grid) <- ~x+y 324s 324s > gridded(meuse.grid) <- TRUE 324s 324s > proj4string(meuse.grid) <- crs 324s 324s > data("meuse.riv") 324s 324s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 324s 324s > proj4string(meuse.riv) <- crs 324s 324s > data("meuse.area") 324s 324s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 324s 324s > proj4string(meuse.area) <- crs 324s > suppressPackageStartupMessages(library(gstat)) 324s > v = variogram(log(zinc)~1, meuse) 324s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 324s model psill range 324s 1 Nug 0.05066243 0.0000 324s 2 Sph 0.59060780 897.0209 324s > k_sp = krige(log(zinc)~1, meuse[-(1:5),], meuse[1:5,], v.fit) 324s [using ordinary kriging] 324s > k_sp_grd = krige(log(zinc)~1, meuse, meuse.grid, v.fit) 324s [using ordinary kriging] 325s > 325s > # 1. using sf: 325s > suppressPackageStartupMessages(library(sf)) 325s > demo(meuse_sf, ask = FALSE, echo = FALSE) 325s > # reloads meuse as data.frame, so 325s > demo(meuse, ask = FALSE) 325s 325s 325s demo(meuse) 325s ---- ~~~~~ 325s 325s > require(sp) 325s 325s > crs = CRS("EPSG:28992") 325s 325s > data("meuse") 325s 325s > coordinates(meuse) <- ~x+y 325s 325s > proj4string(meuse) <- crs 325s 325s > data("meuse.grid") 325s 325s > coordinates(meuse.grid) <- ~x+y 325s 325s > gridded(meuse.grid) <- TRUE 325s 325s > proj4string(meuse.grid) <- crs 325s 325s > data("meuse.riv") 325s 325s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 325s 325s > proj4string(meuse.riv) <- crs 325s 325s > data("meuse.area") 325s 325s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 325s 325s > proj4string(meuse.area) <- crs 325s > 325s > v = variogram(log(zinc)~1, meuse_sf) 325s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 325s model psill range 325s 1 Nug 0.05066243 0.0000 325s 2 Sph 0.59060780 897.0209 325s > k_sf = krige(log(zinc)~1, meuse_sf[-(1:5),], meuse_sf[1:5,], v.fit) 325s [using ordinary kriging] 325s > 325s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = FALSE) 325s [1] TRUE 325s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = TRUE) 325s [1] "Attributes: < Component “bbox”: Attributes: < Component “dimnames”: Component 1: 2 string mismatches > >" 325s [2] "Attributes: < Component “coords”: Attributes: < Component “dimnames”: Component 2: 2 string mismatches > >" 325s [3] "Attributes: < Component “coords.nrs”: Numeric: lengths (2, 0) differ >" 325s > 325s > # 2. using stars for grid: 325s > 325s > suppressPackageStartupMessages(library(stars)) 325s > st = st_as_stars(meuse.grid) 325s > st_crs(st) 325s Coordinate Reference System: 325s User input: Amersfoort / RD New 325s wkt: 325s PROJCRS["Amersfoort / RD New", 325s BASEGEOGCRS["Amersfoort", 325s DATUM["Amersfoort", 325s ELLIPSOID["Bessel 1841",6377397.155,299.1528128, 325s LENGTHUNIT["metre",1]]], 325s PRIMEM["Greenwich",0, 325s ANGLEUNIT["degree",0.0174532925199433]], 325s ID["EPSG",4289]], 325s CONVERSION["RD New", 325s METHOD["Oblique Stereographic", 325s ID["EPSG",9809]], 325s PARAMETER["Latitude of natural origin",52.1561605555556, 325s ANGLEUNIT["degree",0.0174532925199433], 325s ID["EPSG",8801]], 325s PARAMETER["Longitude of natural origin",5.38763888888889, 325s ANGLEUNIT["degree",0.0174532925199433], 325s ID["EPSG",8802]], 325s PARAMETER["Scale factor at natural origin",0.9999079, 325s SCALEUNIT["unity",1], 325s ID["EPSG",8805]], 325s PARAMETER["False easting",155000, 325s LENGTHUNIT["metre",1], 325s ID["EPSG",8806]], 325s PARAMETER["False northing",463000, 325s LENGTHUNIT["metre",1], 325s ID["EPSG",8807]]], 325s CS[Cartesian,2], 325s AXIS["easting (X)",east, 325s ORDER[1], 325s LENGTHUNIT["metre",1]], 325s AXIS["northing (Y)",north, 325s ORDER[2], 325s LENGTHUNIT["metre",1]], 325s USAGE[ 325s SCOPE["Engineering survey, topographic mapping."], 325s AREA["Netherlands - onshore, including Waddenzee, Dutch Wadden Islands and 12-mile offshore coastal zone."], 325s BBOX[50.75,3.2,53.7,7.22]], 325s ID["EPSG",28992]] 325s > 325s > # compare inputs: 325s > sp = as(st, "Spatial") 325s > fullgrid(meuse.grid) = TRUE 325s > all.equal(sp, meuse.grid["dist"], check.attributes = FALSE) 325s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 325s [2] "Names: 1 string mismatch" 325s > all.equal(sp, meuse.grid["dist"], check.attributes = TRUE, use.names = FALSE) 325s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 325s [2] "Names: 1 string mismatch" 325s [3] "Attributes: < Component 3: Names: 1 string mismatch >" 325s [4] "Attributes: < Component 3: Length mismatch: comparison on first 1 components >" 325s [5] "Attributes: < Component 3: Component 1: Mean relative difference: 1.08298 >" 325s [6] "Attributes: < Component 4: Attributes: < Component 2: names for current but not for target > >" 325s [7] "Attributes: < Component 4: Attributes: < Component 3: names for current but not for target > >" 325s > 325s > # kriging: 325s > st_crs(st) = st_crs(meuse_sf) = NA # GDAL roundtrip messes them up! 325s > k_st = if (Sys.getenv("USER") == "travis") { 325s + try(krige(log(zinc)~1, meuse_sf, st, v.fit)) 325s + } else { 325s + krige(log(zinc)~1, meuse_sf, st, v.fit) 325s + } 325s [using ordinary kriging] 325s > k_st 325s stars object with 2 dimensions and 2 attributes 325s attribute(s): 325s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 325s var1.pred 4.7765547 5.2376293 5.5728839 5.7072287 6.1717619 7.4399911 5009 325s var1.var 0.0854949 0.1372864 0.1621838 0.1853319 0.2116152 0.5002756 5009 325s dimension(s): 325s from to offset delta x/y 325s x 1 78 178440 40 [x] 325s y 1 104 333760 -40 [y] 325s > 325s > # handle factors, when going to stars? 325s > k_sp_grd$cls = cut(k_sp_grd$var1.pred, c(0, 5, 6, 7, 8, 9)) 325s > st_as_stars(k_sp_grd) 325s stars object with 2 dimensions and 3 attributes 325s attribute(s): 325s var1.pred var1.var cls 325s Min. :4.777 Min. :0.085 (0,5]: 316 325s 1st Qu.:5.238 1st Qu.:0.137 (5,6]:1778 325s Median :5.573 Median :0.162 (6,7]: 962 325s Mean :5.707 Mean :0.185 (7,8]: 47 325s 3rd Qu.:6.172 3rd Qu.:0.212 (8,9]: 0 325s Max. :7.440 Max. :0.500 NA's :5009 325s NA's :5009 NA's :5009 325s dimension(s): 325s from to offset delta refsys x/y 325s x 1 78 178440 40 Amersfoort / RD New [x] 325s y 1 104 333760 -40 Amersfoort / RD New [y] 325s > if (require(raster, quietly = TRUE)) { 325s + print(st_as_stars(raster::stack(k_sp_grd))) # check 325s + print(all.equal(st_redimension(st_as_stars(k_sp_grd)), st_as_stars(raster::stack(k_sp_grd)), check.attributes=FALSE)) 325s + } 331s stars object with 3 dimensions and 1 attribute 331s attribute(s): 331s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 331s var1.pred 0.0854949 0.2116778 2 2.710347 5.237542 7.439991 15027 331s dimension(s): 331s from to offset delta refsys values 331s x 1 78 178440 40 Amersfoort / RD New NULL 331s y 1 104 333760 -40 Amersfoort / RD New NULL 331s band 1 3 NA NA NA var1.pred, var1.var , cls 331s x/y 331s x [x] 331s y [y] 331s band 331s [1] TRUE 331s > 331s > suppressPackageStartupMessages(library(spacetime)) 331s > 331s > Sys.setenv(TZ="") 331s > tm = as.POSIXct("2019-02-25 15:37:24 CET") 331s > n = 4 331s > s = stars:::st_stars(list(foo = array(1:(n^3), rep(n,3))), 331s + stars:::create_dimensions(list( 331s + x = stars:::create_dimension(from = 1, to = n, offset = 10, delta = 0.5), 331s + y = stars:::create_dimension(from = 1, to = n, offset = 0, delta = -0.7), 331s + time = stars:::create_dimension(values = tm + 1:n)), 331s + raster = stars:::get_raster(dimensions = c("x", "y"))) 331s + ) 331s > s 331s stars object with 3 dimensions and 1 attribute 331s attribute(s): 331s Min. 1st Qu. Median Mean 3rd Qu. Max. 331s foo 1 16.75 32.5 32.5 48.25 64 331s dimension(s): 331s from to offset delta refsys x/y 331s x 1 4 10 0.5 NA [x] 331s y 1 4 0 -0.7 NA [y] 331s time 1 4 2019-02-25 15:37:25 Universal 1 secs POSIXct 331s > 331s > as.data.frame(s) 331s x y time foo 331s 1 10.25 -0.35 2019-02-25 15:37:25 1 331s 2 10.75 -0.35 2019-02-25 15:37:25 2 331s 3 11.25 -0.35 2019-02-25 15:37:25 3 331s 4 11.75 -0.35 2019-02-25 15:37:25 4 331s 5 10.25 -1.05 2019-02-25 15:37:25 5 331s 6 10.75 -1.05 2019-02-25 15:37:25 6 331s 7 11.25 -1.05 2019-02-25 15:37:25 7 331s 8 11.75 -1.05 2019-02-25 15:37:25 8 331s 9 10.25 -1.75 2019-02-25 15:37:25 9 331s 10 10.75 -1.75 2019-02-25 15:37:25 10 331s 11 11.25 -1.75 2019-02-25 15:37:25 11 331s 12 11.75 -1.75 2019-02-25 15:37:25 12 331s 13 10.25 -2.45 2019-02-25 15:37:25 13 331s 14 10.75 -2.45 2019-02-25 15:37:25 14 331s 15 11.25 -2.45 2019-02-25 15:37:25 15 331s 16 11.75 -2.45 2019-02-25 15:37:25 16 331s 17 10.25 -0.35 2019-02-25 15:37:26 17 331s 18 10.75 -0.35 2019-02-25 15:37:26 18 331s 19 11.25 -0.35 2019-02-25 15:37:26 19 331s 20 11.75 -0.35 2019-02-25 15:37:26 20 331s 21 10.25 -1.05 2019-02-25 15:37:26 21 331s 22 10.75 -1.05 2019-02-25 15:37:26 22 331s 23 11.25 -1.05 2019-02-25 15:37:26 23 331s 24 11.75 -1.05 2019-02-25 15:37:26 24 331s 25 10.25 -1.75 2019-02-25 15:37:26 25 331s 26 10.75 -1.75 2019-02-25 15:37:26 26 331s 27 11.25 -1.75 2019-02-25 15:37:26 27 331s 28 11.75 -1.75 2019-02-25 15:37:26 28 331s 29 10.25 -2.45 2019-02-25 15:37:26 29 331s 30 10.75 -2.45 2019-02-25 15:37:26 30 331s 31 11.25 -2.45 2019-02-25 15:37:26 31 331s 32 11.75 -2.45 2019-02-25 15:37:26 32 331s 33 10.25 -0.35 2019-02-25 15:37:27 33 331s 34 10.75 -0.35 2019-02-25 15:37:27 34 331s 35 11.25 -0.35 2019-02-25 15:37:27 35 331s 36 11.75 -0.35 2019-02-25 15:37:27 36 331s 37 10.25 -1.05 2019-02-25 15:37:27 37 331s 38 10.75 -1.05 2019-02-25 15:37:27 38 331s 39 11.25 -1.05 2019-02-25 15:37:27 39 331s 40 11.75 -1.05 2019-02-25 15:37:27 40 331s 41 10.25 -1.75 2019-02-25 15:37:27 41 331s 42 10.75 -1.75 2019-02-25 15:37:27 42 331s 43 11.25 -1.75 2019-02-25 15:37:27 43 331s 44 11.75 -1.75 2019-02-25 15:37:27 44 331s 45 10.25 -2.45 2019-02-25 15:37:27 45 331s 46 10.75 -2.45 2019-02-25 15:37:27 46 331s 47 11.25 -2.45 2019-02-25 15:37:27 47 331s 48 11.75 -2.45 2019-02-25 15:37:27 48 331s 49 10.25 -0.35 2019-02-25 15:37:28 49 331s 50 10.75 -0.35 2019-02-25 15:37:28 50 331s 51 11.25 -0.35 2019-02-25 15:37:28 51 331s 52 11.75 -0.35 2019-02-25 15:37:28 52 331s 53 10.25 -1.05 2019-02-25 15:37:28 53 331s 54 10.75 -1.05 2019-02-25 15:37:28 54 331s 55 11.25 -1.05 2019-02-25 15:37:28 55 331s 56 11.75 -1.05 2019-02-25 15:37:28 56 331s 57 10.25 -1.75 2019-02-25 15:37:28 57 331s 58 10.75 -1.75 2019-02-25 15:37:28 58 331s 59 11.25 -1.75 2019-02-25 15:37:28 59 331s 60 11.75 -1.75 2019-02-25 15:37:28 60 331s 61 10.25 -2.45 2019-02-25 15:37:28 61 331s 62 10.75 -2.45 2019-02-25 15:37:28 62 331s 63 11.25 -2.45 2019-02-25 15:37:28 63 331s 64 11.75 -2.45 2019-02-25 15:37:28 64 331s > plot(s, col = sf.colors(), axes = TRUE) 331s > (s.stfdf = as(s, "STFDF")) 331s An object of class "STFDF" 331s Slot "data": 331s foo 331s 1 1 331s 2 2 331s 3 3 331s 4 4 331s 5 5 331s 6 6 331s 7 7 331s 8 8 331s 9 9 331s 10 10 331s 11 11 331s 12 12 331s 13 13 331s 14 14 331s 15 15 331s 16 16 331s 17 17 331s 18 18 331s 19 19 331s 20 20 331s 21 21 331s 22 22 331s 23 23 331s 24 24 331s 25 25 331s 26 26 331s 27 27 331s 28 28 331s 29 29 331s 30 30 331s 31 31 331s 32 32 331s 33 33 331s 34 34 331s 35 35 331s 36 36 331s 37 37 331s 38 38 331s 39 39 331s 40 40 331s 41 41 331s 42 42 331s 43 43 331s 44 44 331s 45 45 331s 46 46 331s 47 47 331s 48 48 331s 49 49 331s 50 50 331s 51 51 331s 52 52 331s 53 53 331s 54 54 331s 55 55 331s 56 56 331s 57 57 331s 58 58 331s 59 59 331s 60 60 331s 61 61 331s 62 62 331s 63 63 331s 64 64 331s 331s Slot "sp": 331s Object of class SpatialPixels 331s Grid topology: 331s cellcentre.offset cellsize cells.dim 331s x 10.25 0.5 4 331s y -2.45 0.7 4 331s SpatialPoints: 331s x y 331s [1,] 10.25 -0.35 331s [2,] 10.75 -0.35 331s [3,] 11.25 -0.35 331s [4,] 11.75 -0.35 331s [5,] 10.25 -1.05 331s [6,] 10.75 -1.05 331s [7,] 11.25 -1.05 331s [8,] 11.75 -1.05 331s [9,] 10.25 -1.75 331s [10,] 10.75 -1.75 331s [11,] 11.25 -1.75 331s [12,] 11.75 -1.75 331s [13,] 10.25 -2.45 331s [14,] 10.75 -2.45 331s [15,] 11.25 -2.45 331s [16,] 11.75 -2.45 331s Coordinate Reference System (CRS) arguments: NA 331s 331s Slot "time": 331s timeIndex 331s 2019-02-25 15:37:25 1 331s 2019-02-25 15:37:26 2 331s 2019-02-25 15:37:27 3 331s 2019-02-25 15:37:28 4 331s 331s Slot "endTime": 331s [1] "2019-02-25 15:37:26 Universal" "2019-02-25 15:37:27 Universal" 331s [3] "2019-02-25 15:37:28 Universal" "2019-02-25 15:37:29 Universal" 331s 331s > stplot(s.stfdf, scales = list(draw = TRUE)) 331s > 331s > (s2 = st_as_stars(s.stfdf)) 331s stars object with 3 dimensions and 1 attribute 331s attribute(s): 331s Min. 1st Qu. Median Mean 3rd Qu. Max. 331s foo 1 16.75 32.5 32.5 48.25 64 331s dimension(s): 331s from to offset delta refsys x/y 331s x 1 4 10 0.5 NA [x] 331s y 1 4 -1.11e-16 -0.7 NA [y] 331s time 1 4 2019-02-25 15:37:25 Universal 1 secs POSIXct 331s > plot(s2, col = sf.colors(), axes = TRUE) 332s > all.equal(s, s2, check.attributes = FALSE) 332s [1] TRUE 332s > 332s > # multiple simulations: 332s > data(meuse, package = "sp") 332s > data(meuse.grid, package = "sp") 332s > coordinates(meuse.grid) <- ~x+y 332s > gridded(meuse.grid) <- TRUE 332s > meuse.grid = st_as_stars(meuse.grid) 332s > meuse_sf = st_as_sf(meuse, coords = c("x", "y")) 332s > g = gstat(NULL, "zinc", zinc~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10) 332s > g = gstat(g, "lead", lead~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10, fill.cross = TRUE) 332s > set.seed(123) 332s > (p = predict(g, meuse.grid, nsim = 5)) 332s drawing 5 multivariate GLS realisations of beta... 332s [using conditional Gaussian simulation] 332s stars object with 3 dimensions and 2 attributes 332s attribute(s): 332s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 332s zinc 101.7643 199.59256 300.2140 399.8017 544.0327 1817.2057 25045 332s lead 32.7799 73.03151 107.9339 133.1725 178.8162 638.9396 25045 332s dimension(s): 332s from to offset delta values x/y 332s x 1 78 178440 40 NULL [x] 332s y 1 104 333760 -40 NULL [y] 332s sample 1 5 NA NA sim1,...,sim5 332s > 332s BEGIN TEST unproj.R 332s 332s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 332s Copyright (C) 2024 The R Foundation for Statistical Computing 332s Platform: arm-unknown-linux-gnueabihf (32-bit) 332s 332s R is free software and comes with ABSOLUTELY NO WARRANTY. 332s You are welcome to redistribute it under certain conditions. 332s Type 'license()' or 'licence()' for distribution details. 332s 332s R is a collaborative project with many contributors. 332s Type 'contributors()' for more information and 332s 'citation()' on how to cite R or R packages in publications. 332s 332s Type 'demo()' for some demos, 'help()' for on-line help, or 332s 'help.start()' for an HTML browser interface to help. 332s Type 'q()' to quit R. 332s 332s > # DOI 10.1007/s11004-011-9344-7 332s > # http://mypage.iu.edu/~srobeson/Pubs/variogram_sphere_mathgeo_2011.pdf 332s > 332s > suppressPackageStartupMessages(library(sp)) 332s > library(gstat) 333s > 333s > if (require(sp, quietly = TRUE) && require(fields, quietly = TRUE) && require(sf, quietly = TRUE)) { 333s + data(meuse) 333s + coordinates(meuse) = ~x+y 333s + proj4string(meuse) = CRS("+init=epsg:28992") 333s + ll = "+proj=longlat +ellps=WGS84" 333s + # meuse.ll = spTransform(meuse, CRS("+proj=longlat +ellps=WGS84")) 333s + meuse.ll = as(st_transform(sf::st_as_sf(meuse), sf::st_crs(ll)), "Spatial") 333s + meuse.ll[1:10,] 333s + variogram(log(zinc)~1, meuse.ll) 333s + 333s + cloud1 = variogram(log(zinc)~1, meuse, cloud=T, cutoff=6000) 333s + cloud2 = variogram(log(zinc)~1, meuse.ll, cloud=T, cutoff=6) 333s + 333s + plot(cloud1$dist/1000, cloud2$dist, xlab="Amersfoort, km", ylab = "Long/lat") 333s + abline(0,1) 333s + 333s + data(ozone2) 333s + oz = SpatialPointsDataFrame(ozone2$lon.lat, 333s + data.frame(t(ozone2$y)), 333s + proj4string=CRS("+proj=longlat +ellps=WGS84")) 333s + variogram(X870731~1,oz[!is.na(oz$X870731),]) 333s + utm16 = "+proj=utm +zone=16" 333s + # oz.utm = spTransform(oz, utm16) 333s + oz.utm = as(sf::st_transform(sf::st_as_sf(oz), utm16) , "Spatial") 333s + variogram(X870731~1,oz.utm[!is.na(oz$X870731),]) 333s + 333s + # Timothy Hilton, r-sig-geo, Sept 14, 2008: 333s + 333s + foo <- 333s + structure(list(z = c(-1.95824831109744, -1.9158901643563, 4.22211761150161, 333s + 3.23356929459598, 1.12038389231868, 0.34613850821113, 1.12589932643631, 333s + 23.517912251617, 3.0519158690268, 3.20261431141517, -2.10947106854739 333s + ), lon = c(-125.29228, -82.1556, -98.524722, -99.948333, -104.691741, 333s + -79.420833, -105.100533, -88.291867, -72.171478, -121.556944, 333s + -89.34765), lat = c(49.87217, 48.2167, 55.905833, 56.635833, 333s + 53.916264, 39.063333, 48.307883, 40.0061, 42.537756, 44.448889, 333s + 46.242017)), .Names = c("z", "lon", "lat"), row.names = c(NA, 333s + -11L), class = "data.frame") 333s + 333s + coordinates(foo) <- ~lon+lat 333s + 333s + proj4string(foo) <- CRS('+proj=longlat +ellps=WGS84') 333s + 333s + vg.foo <- variogram(z~1, foo, cloud=TRUE, cutoff=1e10) 333s + 333s + cat('==========\nvariogram:\n') 333s + print(head(vg.foo)) 333s + 333s + cat('==========\nspDistsN1 Distances:\n') 333s + print(spDistsN1(coordinates(foo), coordinates(foo)[1,], longlat=TRUE)) 333s + } 333s Spam version 2.10-0 (2023-10-23) is loaded. 333s Type 'help( Spam)' or 'demo( spam)' for a short introduction 333s and overview of this package. 333s Help for individual functions is also obtained by adding the 333s suffix '.spam' to the function name, e.g. 'help( chol.spam)'. 333s 333s Attaching package: ‘spam’ 333s 333s The following objects are masked from ‘package:base’: 333s 333s backsolve, forwardsolve 333s 333s 333s Try help(fields) to get started. 333s Linking to GEOS 3.12.2, GDAL 3.9.1, PROJ 9.4.1; sf_use_s2() is TRUE 334s ========== 334s variogram: 334s dist gamma dir.hor dir.ver id left right 334s 1 3115.1190 8.971063e-04 0 0 var1 2 1 334s 2 1908.0468 1.909846e+01 0 0 var1 3 1 334s 3 1405.6211 1.883757e+01 0 0 var1 3 2 334s 4 1837.5667 1.347749e+01 0 0 var1 4 1 334s 5 1522.8765 1.325847e+01 0 0 var1 4 2 334s 6 119.9386 4.886139e-01 0 0 var1 4 3 334s ========== 334s spDistsN1 Distances: 334s [1] 0.0000 3115.1190 1908.0468 1837.5667 1481.6293 3775.6751 1480.4477 334s [8] 3081.7541 4090.4022 665.9348 2683.1516 334s > 334s Warning message: 334s In CPL_crs_from_input(x) : 334s GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order. 334s BEGIN TEST variogram.R 334s 334s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 334s Copyright (C) 2024 The R Foundation for Statistical Computing 334s Platform: arm-unknown-linux-gnueabihf (32-bit) 334s 334s R is free software and comes with ABSOLUTELY NO WARRANTY. 334s You are welcome to redistribute it under certain conditions. 334s Type 'license()' or 'licence()' for distribution details. 334s 334s R is a collaborative project with many contributors. 334s Type 'contributors()' for more information and 334s 'citation()' on how to cite R or R packages in publications. 334s 334s Type 'demo()' for some demos, 'help()' for on-line help, or 334s 'help.start()' for an HTML browser interface to help. 334s Type 'q()' to quit R. 334s 334s > library(sp) 335s > library(gstat) 335s > data(meuse) 335s > variogram(log(zinc)~1, ~x+y, meuse) 335s np dist gamma dir.hor dir.ver id 335s 1 57 79.29244 0.1234479 0 0 var1 335s 2 299 163.97367 0.2162185 0 0 var1 335s 3 419 267.36483 0.3027859 0 0 var1 335s 4 457 372.73542 0.4121448 0 0 var1 335s 5 547 478.47670 0.4634128 0 0 var1 335s 6 533 585.34058 0.5646933 0 0 var1 335s 7 574 693.14526 0.5689683 0 0 var1 335s 8 564 796.18365 0.6186769 0 0 var1 335s 9 589 903.14650 0.6471479 0 0 var1 335s 10 543 1011.29177 0.6915705 0 0 var1 335s 11 500 1117.86235 0.7033984 0 0 var1 335s 12 477 1221.32810 0.6038770 0 0 var1 335s 13 452 1329.16407 0.6517158 0 0 var1 335s 14 457 1437.25620 0.5665318 0 0 var1 335s 15 415 1543.20248 0.5748227 0 0 var1 335s > 335s > coordinates(meuse) <- ~ x + y 335s > variogram(log(zinc)~1, meuse) 335s np dist gamma dir.hor dir.ver id 335s 1 57 79.29244 0.1234479 0 0 var1 335s 2 299 163.97367 0.2162185 0 0 var1 335s 3 419 267.36483 0.3027859 0 0 var1 335s 4 457 372.73542 0.4121448 0 0 var1 335s 5 547 478.47670 0.4634128 0 0 var1 335s 6 533 585.34058 0.5646933 0 0 var1 335s 7 574 693.14526 0.5689683 0 0 var1 335s 8 564 796.18365 0.6186769 0 0 var1 335s 9 589 903.14650 0.6471479 0 0 var1 335s 10 543 1011.29177 0.6915705 0 0 var1 335s 11 500 1117.86235 0.7033984 0 0 var1 335s 12 477 1221.32810 0.6038770 0 0 var1 335s 13 452 1329.16407 0.6517158 0 0 var1 335s 14 457 1437.25620 0.5665318 0 0 var1 335s 15 415 1543.20248 0.5748227 0 0 var1 335s > 335s > ind=seq(1,155,2) 335s > var1= meuse[ind,] 335s > var2= meuse[-ind,] 335s > g <- gstat(NULL, id = "lead", form = lead ~ 1, data=var1) 335s > g <- gstat(g, id = "zinc", form = zinc ~ 1, data=var2) 335s > v.cross <- variogram(g) 335s > plot(v.cross) 336s > 336s > 336s BEGIN TEST vdist.R 336s 336s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 336s Copyright (C) 2024 The R Foundation for Statistical Computing 336s Platform: arm-unknown-linux-gnueabihf (32-bit) 336s 336s R is free software and comes with ABSOLUTELY NO WARRANTY. 336s You are welcome to redistribute it under certain conditions. 336s Type 'license()' or 'licence()' for distribution details. 336s 336s R is a collaborative project with many contributors. 336s Type 'contributors()' for more information and 336s 'citation()' on how to cite R or R packages in publications. 336s 336s Type 'demo()' for some demos, 'help()' for on-line help, or 336s 'help.start()' for an HTML browser interface to help. 336s Type 'q()' to quit R. 336s 336s > library(sp) 336s > library(gstat) 336s > 336s > data(meuse) 336s > coordinates(meuse) = ~x+y 336s > data(meuse.grid) 336s > gridded(meuse.grid) = ~x+y 337s > 337s > mg = meuse.grid 337s > gridded(mg) = FALSE 337s > mg= mg[1500,] 337s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 337s + vdist=FALSE, maxdist=1000,nmax=10) 337s [using ordinary kriging] 337s coordinates var1.pred var1.var 337s 1500 (180260, 331300) 5.007376 1.102622 337s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 337s + vdist=TRUE, maxdist=1000,nmax=10) 337s [using ordinary kriging] 337s coordinates var1.pred var1.var 337s 1500 (180260, 331300) 5.50671 1.100095 337s > 337s autopkgtest [21:35:24]: test run-unit-test: -----------------------] 341s run-unit-test PASS 341s autopkgtest [21:35:28]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 345s autopkgtest [21:35:32]: test pkg-r-autopkgtest: preparing testbed 355s Reading package lists... 355s Building dependency tree... 355s Reading state information... 356s Starting pkgProblemResolver with broken count: 0 356s Starting 2 pkgProblemResolver with broken count: 0 356s Done 357s The following additional packages will be installed: 357s build-essential cpp cpp-14 cpp-14-arm-linux-gnueabihf 357s cpp-arm-linux-gnueabihf dctrl-tools g++ g++-14 g++-14-arm-linux-gnueabihf 357s g++-arm-linux-gnueabihf gcc gcc-14 gcc-14-arm-linux-gnueabihf 357s gcc-arm-linux-gnueabihf gfortran gfortran-14 gfortran-14-arm-linux-gnueabihf 357s gfortran-arm-linux-gnueabihf icu-devtools libasan8 libblas-dev libbz2-dev 357s libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdeflate-dev libgcc-14-dev 357s libgfortran-14-dev libicu-dev libisl23 libjpeg-dev libjpeg-turbo8-dev 357s libjpeg8-dev liblapack-dev liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 357s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev 357s libreadline-dev libstdc++-14-dev libtirpc-dev libubsan1 linux-libc-dev 357s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev r-cran-backports 357s r-cran-base64url r-cran-batchtools r-cran-brew r-cran-checkmate r-cran-cli 357s r-cran-crayon r-cran-data.table r-cran-fs r-cran-future.batchtools 357s r-cran-glue r-cran-hms r-cran-lifecycle r-cran-pkgconfig r-cran-prettyunits 357s r-cran-progress r-cran-r6 r-cran-rappdirs r-cran-stringi r-cran-vctrs 357s r-cran-withr rpcsvc-proto zlib1g-dev 357s Suggested packages: 357s cpp-doc gcc-14-locales cpp-14-doc debtags gcc-14-doc gcc-multilib 357s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 357s gdb-arm-linux-gnueabihf gfortran-doc gfortran-14-doc libcoarrays-dev 357s liblapack-doc libc-devtools glibc-doc icu-doc liblzma-doc ncurses-doc 357s readline-doc libstdc++-14-doc texlive-base texlive-latex-base 357s texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra 357s texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo 357s r-cran-knitr r-cran-rmarkdown r-cran-doparallel r-cran-foreach 357s r-cran-parallelmap r-cran-rpart r-cran-snow r-cran-tibble r-cran-rstudioapi 357s gridengine-client slurm-client r-cran-lubridate r-cran-covr r-cran-testthat 357s r-cran-roxygen2 357s Recommended packages: 357s bzip2-doc manpages manpages-dev libpng-tools r-cran-testthat 357s r-cran-base64enc r-cran-openssl r-cran-ranger r-cran-fastmatch 357s r-cran-devtools r-cran-ggplot2 r-cran-knitr r-cran-rmarkdown r-cran-tinytest 357s r-cran-tibble r-cran-callr r-cran-covr r-cran-htmltools r-cran-htmlwidgets 357s r-cran-mockery r-cran-processx r-cran-ps r-cran-rprojroot r-cran-rstudioapi 357s r-cran-whoami r-cran-bit64 r-cran-bit r-cran-r.utils r-cran-yaml 357s r-cran-markdown r-cran-pillar r-cran-spelling r-cran-r.rsp r-cran-dplyr 357s r-cran-rsqlite r-cran-waldo r-cran-lintr r-cran-tidyverse r-cran-generics 357s r-cran-pkgdown r-cran-xml2 r-cran-zeallot 357s The following NEW packages will be installed: 357s autopkgtest-satdep build-essential cpp cpp-14 cpp-14-arm-linux-gnueabihf 357s cpp-arm-linux-gnueabihf dctrl-tools g++ g++-14 g++-14-arm-linux-gnueabihf 357s g++-arm-linux-gnueabihf gcc gcc-14 gcc-14-arm-linux-gnueabihf 357s gcc-arm-linux-gnueabihf gfortran gfortran-14 gfortran-14-arm-linux-gnueabihf 357s gfortran-arm-linux-gnueabihf icu-devtools libasan8 libblas-dev libbz2-dev 357s libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdeflate-dev libgcc-14-dev 357s libgfortran-14-dev libicu-dev libisl23 libjpeg-dev libjpeg-turbo8-dev 357s libjpeg8-dev liblapack-dev liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 357s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev 357s libreadline-dev libstdc++-14-dev libtirpc-dev libubsan1 linux-libc-dev 357s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev r-cran-backports 357s r-cran-base64url r-cran-batchtools r-cran-brew r-cran-checkmate r-cran-cli 357s r-cran-crayon r-cran-data.table r-cran-fs r-cran-future.batchtools 357s r-cran-glue r-cran-hms r-cran-lifecycle r-cran-pkgconfig r-cran-prettyunits 357s r-cran-progress r-cran-r6 r-cran-rappdirs r-cran-stringi r-cran-vctrs 357s r-cran-withr rpcsvc-proto zlib1g-dev 357s 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. 357s Need to get 86.2 MB/86.2 MB of archives. 357s After this operation, 253 MB of additional disk space will be used. 357s Get:1 /tmp/autopkgtest.gD8idJ/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [764 B] 357s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libc-dev-bin armhf 2.40-1ubuntu3 [19.2 kB] 357s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf linux-libc-dev armhf 6.11.0-8.8 [1628 kB] 357s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libcrypt-dev armhf 1:4.4.36-4build1 [120 kB] 357s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB] 357s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libc6-dev armhf 2.40-1ubuntu3 [1370 kB] 357s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libisl23 armhf 0.27-1 [546 kB] 357s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libmpc3 armhf 1.3.1-1build2 [47.1 kB] 357s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14-arm-linux-gnueabihf armhf 14.2.0-7ubuntu1 [9219 kB] 358s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14 armhf 14.2.0-7ubuntu1 [1030 B] 358s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-arm-linux-gnueabihf armhf 4:14.1.0-2ubuntu1 [5464 B] 358s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf cpp armhf 4:14.1.0-2ubuntu1 [22.4 kB] 358s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libcc1-0 armhf 14.2.0-7ubuntu1 [43.3 kB] 358s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libasan8 armhf 14.2.0-7ubuntu1 [2901 kB] 358s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libubsan1 armhf 14.2.0-7ubuntu1 [1150 kB] 358s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-14-dev armhf 14.2.0-7ubuntu1 [897 kB] 358s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-arm-linux-gnueabihf armhf 14.2.0-7ubuntu1 [18.0 MB] 358s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14 armhf 14.2.0-7ubuntu1 [495 kB] 358s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-arm-linux-gnueabihf armhf 4:14.1.0-2ubuntu1 [1222 B] 358s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf gcc armhf 4:14.1.0-2ubuntu1 [5002 B] 358s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++-14-dev armhf 14.2.0-7ubuntu1 [2567 kB] 358s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14-arm-linux-gnueabihf armhf 14.2.0-7ubuntu1 [10.5 MB] 359s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14 armhf 14.2.0-7ubuntu1 [19.8 kB] 359s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf g++-arm-linux-gnueabihf armhf 4:14.1.0-2ubuntu1 [968 B] 359s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf g++ armhf 4:14.1.0-2ubuntu1 [1084 B] 359s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf build-essential armhf 12.10ubuntu1 [4928 B] 359s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf dctrl-tools armhf 2.24-3build3 [94.7 kB] 359s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran-14-dev armhf 14.2.0-7ubuntu1 [370 kB] 359s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf gfortran-14-arm-linux-gnueabihf armhf 14.2.0-7ubuntu1 [9765 kB] 359s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf gfortran-14 armhf 14.2.0-7ubuntu1 [11.6 kB] 359s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf gfortran-arm-linux-gnueabihf armhf 4:14.1.0-2ubuntu1 [1024 B] 359s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf gfortran armhf 4:14.1.0-2ubuntu1 [1164 B] 359s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf icu-devtools armhf 74.2-1ubuntu4 [202 kB] 359s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libblas-dev armhf 3.12.0-3build2 [134 kB] 359s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libbz2-dev armhf 1.0.8-6 [30.9 kB] 359s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate-dev armhf 1.21-1 [45.0 kB] 359s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libicu-dev armhf 74.2-1ubuntu4 [11.6 MB] 359s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8-dev armhf 2.1.5-2ubuntu2 [262 kB] 359s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8-dev armhf 8c-2ubuntu11 [1484 B] 359s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-dev armhf 8c-2ubuntu11 [1482 B] 359s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack-dev armhf 3.12.0-3build2 [2203 kB] 359s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libncurses-dev armhf 6.5-2 [501 kB] 359s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-16-0 armhf 10.42-4ubuntu3 [186 kB] 359s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-32-0 armhf 10.42-4ubuntu3 [176 kB] 359s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-posix3 armhf 10.42-4ubuntu3 [6178 B] 359s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-dev armhf 10.42-4ubuntu3 [679 kB] 359s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf libpkgconf3 armhf 1.8.1-3ubuntu1 [26.6 kB] 359s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1ubuntu1 [880 kB] 359s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libpng-dev armhf 1.6.44-1 [249 kB] 359s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf libreadline-dev armhf 8.2-5 [154 kB] 359s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf liblzma-dev armhf 5.6.2-2 [166 kB] 359s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf pkgconf-bin armhf 1.8.1-3ubuntu1 [21.2 kB] 359s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf pkgconf armhf 1.8.1-3ubuntu1 [16.8 kB] 359s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libtirpc-dev armhf 1.3.4+ds-1.3 [184 kB] 359s Get:55 http://ftpmaster.internal/ubuntu plucky/universe armhf r-base-dev all 4.4.1-1 [4338 B] 359s Get:56 http://ftpmaster.internal/ubuntu plucky/universe armhf pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 359s Get:57 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-backports armhf 1.5.0-2 [121 kB] 359s Get:58 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-base64url armhf 1.4-2build1 [25.9 kB] 359s Get:59 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-brew all 1.0-10-1 [77.7 kB] 359s Get:60 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-checkmate armhf 2.3.1-1 [708 kB] 359s Get:61 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-data.table armhf 1.15.4+dfsg-2.2 [1841 kB] 359s Get:62 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-fs armhf 1.6.4+dfsg-1 [242 kB] 359s Get:63 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-crayon all 1.5.2-1 [164 kB] 359s Get:64 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-cli armhf 3.6.2-1 [1363 kB] 359s Get:65 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-glue armhf 1.7.0-1 [153 kB] 359s Get:66 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 359s Get:67 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 359s Get:68 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-vctrs armhf 0.6.5-1 [1310 kB] 359s Get:69 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-hms all 1.1.3-1 [96.5 kB] 359s Get:70 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-prettyunits all 1.2.0-1 [162 kB] 359s Get:71 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-r6 all 2.5.1-1 [99.0 kB] 359s Get:72 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-progress all 1.2.3-1 [91.9 kB] 359s Get:73 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-rappdirs armhf 0.3.3-1 [47.4 kB] 359s Get:74 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-stringi armhf 1.8.3-1 [859 kB] 360s Get:75 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-withr all 3.0.0+dfsg-1 [228 kB] 360s Get:76 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-batchtools armhf 0.9.17+dfsg-1 [711 kB] 360s Get:77 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-future.batchtools all 0.12.1+dfsg-1 [185 kB] 360s Fetched 86.2 MB in 3s (29.9 MB/s) 360s Selecting previously unselected package libc-dev-bin. 360s (Reading database 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 66088 files and directories currently installed.) 360s Preparing to unpack .../00-libc-dev-bin_2.40-1ubuntu3_armhf.deb ... 360s Unpacking libc-dev-bin (2.40-1ubuntu3) ... 360s Selecting previously unselected package linux-libc-dev:armhf. 360s Preparing to unpack .../01-linux-libc-dev_6.11.0-8.8_armhf.deb ... 360s Unpacking linux-libc-dev:armhf (6.11.0-8.8) ... 360s Selecting previously unselected package libcrypt-dev:armhf. 360s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4build1_armhf.deb ... 360s Unpacking libcrypt-dev:armhf (1:4.4.36-4build1) ... 360s Selecting previously unselected package rpcsvc-proto. 360s Preparing to unpack .../03-rpcsvc-proto_1.4.2-0ubuntu7_armhf.deb ... 360s Unpacking rpcsvc-proto (1.4.2-0ubuntu7) ... 360s Selecting previously unselected package libc6-dev:armhf. 360s Preparing to unpack .../04-libc6-dev_2.40-1ubuntu3_armhf.deb ... 360s Unpacking libc6-dev:armhf (2.40-1ubuntu3) ... 360s Selecting previously unselected package libisl23:armhf. 360s Preparing to unpack .../05-libisl23_0.27-1_armhf.deb ... 360s Unpacking libisl23:armhf (0.27-1) ... 360s Selecting previously unselected package libmpc3:armhf. 360s Preparing to unpack .../06-libmpc3_1.3.1-1build2_armhf.deb ... 360s Unpacking libmpc3:armhf (1.3.1-1build2) ... 361s Selecting previously unselected package cpp-14-arm-linux-gnueabihf. 361s Preparing to unpack .../07-cpp-14-arm-linux-gnueabihf_14.2.0-7ubuntu1_armhf.deb ... 361s Unpacking cpp-14-arm-linux-gnueabihf (14.2.0-7ubuntu1) ... 361s Selecting previously unselected package cpp-14. 361s Preparing to unpack .../08-cpp-14_14.2.0-7ubuntu1_armhf.deb ... 361s Unpacking cpp-14 (14.2.0-7ubuntu1) ... 361s Selecting previously unselected package cpp-arm-linux-gnueabihf. 361s Preparing to unpack .../09-cpp-arm-linux-gnueabihf_4%3a14.1.0-2ubuntu1_armhf.deb ... 361s Unpacking cpp-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ... 361s Selecting previously unselected package cpp. 361s Preparing to unpack .../10-cpp_4%3a14.1.0-2ubuntu1_armhf.deb ... 361s Unpacking cpp (4:14.1.0-2ubuntu1) ... 361s Selecting previously unselected package libcc1-0:armhf. 361s Preparing to unpack .../11-libcc1-0_14.2.0-7ubuntu1_armhf.deb ... 361s Unpacking libcc1-0:armhf (14.2.0-7ubuntu1) ... 361s Selecting previously unselected package libasan8:armhf. 361s Preparing to unpack .../12-libasan8_14.2.0-7ubuntu1_armhf.deb ... 361s Unpacking libasan8:armhf (14.2.0-7ubuntu1) ... 361s Selecting previously unselected package libubsan1:armhf. 361s Preparing to unpack .../13-libubsan1_14.2.0-7ubuntu1_armhf.deb ... 361s Unpacking libubsan1:armhf (14.2.0-7ubuntu1) ... 361s Selecting previously unselected package libgcc-14-dev:armhf. 361s Preparing to unpack .../14-libgcc-14-dev_14.2.0-7ubuntu1_armhf.deb ... 361s Unpacking libgcc-14-dev:armhf (14.2.0-7ubuntu1) ... 361s Selecting previously unselected package gcc-14-arm-linux-gnueabihf. 361s Preparing to unpack .../15-gcc-14-arm-linux-gnueabihf_14.2.0-7ubuntu1_armhf.deb ... 361s Unpacking gcc-14-arm-linux-gnueabihf (14.2.0-7ubuntu1) ... 361s Selecting previously unselected package gcc-14. 361s Preparing to unpack .../16-gcc-14_14.2.0-7ubuntu1_armhf.deb ... 361s Unpacking gcc-14 (14.2.0-7ubuntu1) ... 361s Selecting previously unselected package gcc-arm-linux-gnueabihf. 361s Preparing to unpack .../17-gcc-arm-linux-gnueabihf_4%3a14.1.0-2ubuntu1_armhf.deb ... 361s Unpacking gcc-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ... 362s Selecting previously unselected package gcc. 362s Preparing to unpack .../18-gcc_4%3a14.1.0-2ubuntu1_armhf.deb ... 362s Unpacking gcc (4:14.1.0-2ubuntu1) ... 362s Selecting previously unselected package libstdc++-14-dev:armhf. 362s Preparing to unpack .../19-libstdc++-14-dev_14.2.0-7ubuntu1_armhf.deb ... 362s Unpacking libstdc++-14-dev:armhf (14.2.0-7ubuntu1) ... 362s Selecting previously unselected package g++-14-arm-linux-gnueabihf. 362s Preparing to unpack .../20-g++-14-arm-linux-gnueabihf_14.2.0-7ubuntu1_armhf.deb ... 362s Unpacking g++-14-arm-linux-gnueabihf (14.2.0-7ubuntu1) ... 362s Selecting previously unselected package g++-14. 362s Preparing to unpack .../21-g++-14_14.2.0-7ubuntu1_armhf.deb ... 362s Unpacking g++-14 (14.2.0-7ubuntu1) ... 362s Selecting previously unselected package g++-arm-linux-gnueabihf. 362s Preparing to unpack .../22-g++-arm-linux-gnueabihf_4%3a14.1.0-2ubuntu1_armhf.deb ... 362s Unpacking g++-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ... 362s Selecting previously unselected package g++. 362s Preparing to unpack .../23-g++_4%3a14.1.0-2ubuntu1_armhf.deb ... 362s Unpacking g++ (4:14.1.0-2ubuntu1) ... 362s Selecting previously unselected package build-essential. 362s Preparing to unpack .../24-build-essential_12.10ubuntu1_armhf.deb ... 362s Unpacking build-essential (12.10ubuntu1) ... 362s Selecting previously unselected package dctrl-tools. 362s Preparing to unpack .../25-dctrl-tools_2.24-3build3_armhf.deb ... 362s Unpacking dctrl-tools (2.24-3build3) ... 362s Selecting previously unselected package libgfortran-14-dev:armhf. 362s Preparing to unpack .../26-libgfortran-14-dev_14.2.0-7ubuntu1_armhf.deb ... 362s Unpacking libgfortran-14-dev:armhf (14.2.0-7ubuntu1) ... 362s Selecting previously unselected package gfortran-14-arm-linux-gnueabihf. 362s Preparing to unpack .../27-gfortran-14-arm-linux-gnueabihf_14.2.0-7ubuntu1_armhf.deb ... 362s Unpacking gfortran-14-arm-linux-gnueabihf (14.2.0-7ubuntu1) ... 362s Selecting previously unselected package gfortran-14. 362s Preparing to unpack .../28-gfortran-14_14.2.0-7ubuntu1_armhf.deb ... 362s Unpacking gfortran-14 (14.2.0-7ubuntu1) ... 362s Selecting previously unselected package gfortran-arm-linux-gnueabihf. 363s Preparing to unpack .../29-gfortran-arm-linux-gnueabihf_4%3a14.1.0-2ubuntu1_armhf.deb ... 363s Unpacking gfortran-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ... 363s Selecting previously unselected package gfortran. 363s Preparing to unpack .../30-gfortran_4%3a14.1.0-2ubuntu1_armhf.deb ... 363s Unpacking gfortran (4:14.1.0-2ubuntu1) ... 363s Selecting previously unselected package icu-devtools. 363s Preparing to unpack .../31-icu-devtools_74.2-1ubuntu4_armhf.deb ... 363s Unpacking icu-devtools (74.2-1ubuntu4) ... 363s Selecting previously unselected package libblas-dev:armhf. 363s Preparing to unpack .../32-libblas-dev_3.12.0-3build2_armhf.deb ... 363s Unpacking libblas-dev:armhf (3.12.0-3build2) ... 363s Selecting previously unselected package libbz2-dev:armhf. 363s Preparing to unpack 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Unpacking libjpeg-dev:armhf (8c-2ubuntu11) ... 363s Selecting previously unselected package liblapack-dev:armhf. 363s Preparing to unpack .../39-liblapack-dev_3.12.0-3build2_armhf.deb ... 363s Unpacking liblapack-dev:armhf (3.12.0-3build2) ... 363s Selecting previously unselected package libncurses-dev:armhf. 363s Preparing to unpack .../40-libncurses-dev_6.5-2_armhf.deb ... 363s Unpacking libncurses-dev:armhf (6.5-2) ... 363s Selecting previously unselected package libpcre2-16-0:armhf. 363s Preparing to unpack .../41-libpcre2-16-0_10.42-4ubuntu3_armhf.deb ... 363s Unpacking libpcre2-16-0:armhf (10.42-4ubuntu3) ... 363s Selecting previously unselected package libpcre2-32-0:armhf. 363s Preparing to unpack .../42-libpcre2-32-0_10.42-4ubuntu3_armhf.deb ... 363s Unpacking libpcre2-32-0:armhf (10.42-4ubuntu3) ... 363s Selecting previously unselected package libpcre2-posix3:armhf. 363s Preparing to unpack .../43-libpcre2-posix3_10.42-4ubuntu3_armhf.deb ... 363s Unpacking libpcre2-posix3:armhf (10.42-4ubuntu3) ... 363s Selecting previously unselected package libpcre2-dev:armhf. 363s Preparing to unpack .../44-libpcre2-dev_10.42-4ubuntu3_armhf.deb ... 363s Unpacking libpcre2-dev:armhf (10.42-4ubuntu3) ... 363s Selecting previously unselected package libpkgconf3:armhf. 363s Preparing to unpack .../45-libpkgconf3_1.8.1-3ubuntu1_armhf.deb ... 363s Unpacking libpkgconf3:armhf (1.8.1-3ubuntu1) ... 364s Selecting previously unselected package zlib1g-dev:armhf. 364s Preparing to unpack .../46-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_armhf.deb ... 364s Unpacking zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 364s Selecting previously unselected package libpng-dev:armhf. 364s Preparing to unpack .../47-libpng-dev_1.6.44-1_armhf.deb ... 364s Unpacking libpng-dev:armhf (1.6.44-1) ... 364s Selecting previously unselected package libreadline-dev:armhf. 364s Preparing to unpack .../48-libreadline-dev_8.2-5_armhf.deb ... 364s Unpacking libreadline-dev:armhf (8.2-5) ... 364s Selecting previously unselected package liblzma-dev:armhf. 364s Preparing to unpack .../49-liblzma-dev_5.6.2-2_armhf.deb ... 364s Unpacking liblzma-dev:armhf (5.6.2-2) ... 364s Selecting previously unselected package pkgconf-bin. 364s Preparing to unpack .../50-pkgconf-bin_1.8.1-3ubuntu1_armhf.deb ... 364s Unpacking pkgconf-bin (1.8.1-3ubuntu1) ... 364s Selecting previously unselected package pkgconf:armhf. 364s Preparing to unpack .../51-pkgconf_1.8.1-3ubuntu1_armhf.deb ... 364s Unpacking pkgconf:armhf (1.8.1-3ubuntu1) ... 364s Selecting previously unselected package libtirpc-dev:armhf. 364s Preparing to unpack .../52-libtirpc-dev_1.3.4+ds-1.3_armhf.deb ... 364s Unpacking libtirpc-dev:armhf (1.3.4+ds-1.3) ... 364s Selecting previously unselected package r-base-dev. 364s Preparing to unpack .../53-r-base-dev_4.4.1-1_all.deb ... 364s Unpacking r-base-dev (4.4.1-1) ... 364s Selecting previously unselected package pkg-r-autopkgtest. 364s Preparing to unpack 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(1.15.4+dfsg-2.2) ... 364s Selecting previously unselected package r-cran-fs. 364s Preparing to unpack .../60-r-cran-fs_1.6.4+dfsg-1_armhf.deb ... 364s Unpacking r-cran-fs (1.6.4+dfsg-1) ... 364s Selecting previously unselected package r-cran-crayon. 364s Preparing to unpack .../61-r-cran-crayon_1.5.2-1_all.deb ... 364s Unpacking r-cran-crayon (1.5.2-1) ... 364s Selecting previously unselected package r-cran-cli. 364s Preparing to unpack .../62-r-cran-cli_3.6.2-1_armhf.deb ... 364s Unpacking r-cran-cli (3.6.2-1) ... 364s Selecting previously unselected package r-cran-glue. 364s Preparing to unpack .../63-r-cran-glue_1.7.0-1_armhf.deb ... 364s Unpacking r-cran-glue (1.7.0-1) ... 364s Selecting previously unselected package r-cran-lifecycle. 364s Preparing to unpack .../64-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 364s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 364s Selecting previously unselected package r-cran-pkgconfig. 364s Preparing to unpack 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cpp-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ... 365s Setting up gfortran-14-arm-linux-gnueabihf (14.2.0-7ubuntu1) ... 365s Setting up libbz2-dev:armhf (1.0.8-6) ... 365s Setting up gcc-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ... 365s Setting up g++-14-arm-linux-gnueabihf (14.2.0-7ubuntu1) ... 365s Setting up libjpeg-turbo8-dev:armhf (2.1.5-2ubuntu2) ... 365s Setting up libncurses-dev:armhf (6.5-2) ... 365s Setting up libpcre2-dev:armhf (10.42-4ubuntu3) ... 365s Setting up libreadline-dev:armhf (8.2-5) ... 365s Setting up gcc-14 (14.2.0-7ubuntu1) ... 365s Setting up gfortran-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ... 365s Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 365s Setting up r-cran-batchtools (0.9.17+dfsg-1) ... 365s Setting up cpp (4:14.1.0-2ubuntu1) ... 365s Setting up g++-14 (14.2.0-7ubuntu1) ... 365s Setting up libjpeg8-dev:armhf (8c-2ubuntu11) ... 365s Setting up gfortran-14 (14.2.0-7ubuntu1) ... 365s Setting up g++-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ... 365s Setting up libpng-dev:armhf (1.6.44-1) ... 365s Setting up libjpeg-dev:armhf (8c-2ubuntu11) ... 365s Setting up gcc (4:14.1.0-2ubuntu1) ... 365s Setting up r-cran-future.batchtools (0.12.1+dfsg-1) ... 365s Setting up g++ (4:14.1.0-2ubuntu1) ... 365s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 365s Setting up build-essential (12.10ubuntu1) ... 365s Setting up gfortran (4:14.1.0-2ubuntu1) ... 365s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 365s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 365s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 365s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 365s Setting up r-base-dev (4.4.1-1) ... 365s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 365s Setting up autopkgtest-satdep (0) ... 365s Processing triggers for man-db (2.12.1-3) ... 366s Processing triggers for install-info (7.1.1-1) ... 366s Processing triggers for libc-bin (2.40-1ubuntu3) ... 377s (Reading database ... 71379 files and directories currently installed.) 377s Removing autopkgtest-satdep (0) ... 383s autopkgtest [21:36:10]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 383s autopkgtest [21:36:10]: test pkg-r-autopkgtest: [----------------------- 384s Test: Try to load the R library gstat 385s 385s R version 4.4.1 (2024-06-14) -- "Race for Your Life" 385s Copyright (C) 2024 The R Foundation for Statistical Computing 385s Platform: arm-unknown-linux-gnueabihf (32-bit) 385s 385s R is free software and comes with ABSOLUTELY NO WARRANTY. 385s You are welcome to redistribute it under certain conditions. 385s Type 'license()' or 'licence()' for distribution details. 385s 385s R is a collaborative project with many contributors. 385s Type 'contributors()' for more information and 385s 'citation()' on how to cite R or R packages in publications. 385s 385s Type 'demo()' for some demos, 'help()' for on-line help, or 385s 'help.start()' for an HTML browser interface to help. 385s Type 'q()' to quit R. 385s 385s > library('gstat') 385s > 385s > 385s Other tests are currently unsupported! 385s They will be progressively added. 386s autopkgtest [21:36:13]: test pkg-r-autopkgtest: -----------------------] 390s autopkgtest [21:36:17]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 390s pkg-r-autopkgtest PASS 393s autopkgtest [21:36:20]: @@@@@@@@@@@@@@@@@@@@ summary 393s run-unit-test PASS 393s pkg-r-autopkgtest PASS