0s autopkgtest [20:55:52]: starting date and time: 2024-11-26 20:55:52+0000
  0s autopkgtest [20:55:52]: git checkout: 6408f825 Correct logic in old-systemd fallback code
  0s autopkgtest [20:55:52]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.x7_s0fef/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:r-bioc-biocstyle --apt-upgrade r-cran-biocmanager --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-bioc-biocstyle/2.34.0+dfsg-1 -- lxd -r lxd-armhf-10.145.243.76 lxd-armhf-10.145.243.76:autopkgtest/ubuntu/plucky/armhf
 61s autopkgtest [20:56:53]: testbed dpkg architecture: armhf
 63s autopkgtest [20:56:55]: testbed apt version: 2.9.14ubuntu1
 63s autopkgtest [20:56:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 72s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 72s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [821 kB]
 72s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [54.5 kB]
 72s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B]
 72s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.1 kB]
 72s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [67.7 kB]
 72s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf Packages [928 B]
 72s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [589 kB]
 72s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [6432 B]
 72s Fetched 1637 kB in 1s (1942 kB/s)
 72s Reading package lists...
 90s tee: /proc/self/fd/2: Permission denied
112s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
112s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
112s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
112s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
114s Reading package lists...
114s Reading package lists...
115s Building dependency tree...
115s Reading state information...
116s Calculating upgrade...
116s The following NEW packages will be installed:
116s   appstream cloud-init-base gir1.2-packagekitglib-1.0 libappstream5
116s   libduktape207 libglib2.0-bin libgstreamer1.0-0 libpackagekit-glib2-18
116s   libstemmer0d libunwind8 packagekit packagekit-tools polkitd
116s   python3-distro-info python3-software-properties sgml-base
116s   software-properties-common unattended-upgrades xml-core
116s The following packages will be upgraded:
116s   cloud-init dracut-install libperl5.40 perl perl-base perl-modules-5.40
116s   ubuntu-minimal ubuntu-standard wget
116s 9 upgraded, 19 newly installed, 0 to remove and 0 not upgraded.
116s Need to get 12.9 MB of archives.
116s After this operation, 7910 kB of additional disk space will be used.
116s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-8 [4137 kB]
117s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-8 [262 kB]
117s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-8 [1674 kB]
117s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-8 [3214 kB]
117s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf sgml-base all 1.31 [11.4 kB]
117s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf ubuntu-minimal armhf 1.544 [11.3 kB]
117s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf python3-distro-info all 1.12 [7754 B]
117s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf wget armhf 1.24.5-2ubuntu1 [326 kB]
117s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf ubuntu-standard armhf 1.544 [11.3 kB]
117s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libstemmer0d armhf 2.2.0-4build1 [130 kB]
117s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libappstream5 armhf 1.0.3-1 [209 kB]
117s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf appstream armhf 1.0.3-1 [64.2 kB]
117s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf cloud-init all 24.4-0ubuntu1 [2088 B]
117s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf cloud-init-base all 24.4-0ubuntu1 [612 kB]
117s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf dracut-install armhf 105-2ubuntu3 [37.6 kB]
117s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libpackagekit-glib2-18 armhf 1.3.0-2 [109 kB]
117s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf gir1.2-packagekitglib-1.0 armhf 1.3.0-2 [25.5 kB]
117s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libduktape207 armhf 2.7.0+tests-0ubuntu3 [123 kB]
117s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libglib2.0-bin armhf 2.82.2-3 [92.3 kB]
117s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libunwind8 armhf 1.6.2-3.1 [47.6 kB]
117s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libgstreamer1.0-0 armhf 1.24.9-1 [1136 kB]
117s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf xml-core all 0.19 [20.3 kB]
117s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf polkitd armhf 125-2ubuntu1 [91.5 kB]
117s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf packagekit armhf 1.3.0-2 [430 kB]
117s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf packagekit-tools armhf 1.3.0-2 [27.7 kB]
117s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf python3-software-properties all 0.105 [30.3 kB]
117s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf software-properties-common all 0.105 [16.5 kB]
117s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf unattended-upgrades all 2.9.1+nmu4ubuntu1 [51.2 kB]
117s Preconfiguring packages ...
117s Fetched 12.9 MB in 1s (11.6 MB/s)
118s (Reading database ... 
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(Reading database ... 59609 files and directories currently installed.)
118s Preparing to unpack .../libperl5.40_5.40.0-8_armhf.deb ...
118s Unpacking libperl5.40:armhf (5.40.0-8) over (5.40.0-7) ...
118s Preparing to unpack .../perl_5.40.0-8_armhf.deb ...
118s Unpacking perl (5.40.0-8) over (5.40.0-7) ...
118s Preparing to unpack .../perl-base_5.40.0-8_armhf.deb ...
118s Unpacking perl-base (5.40.0-8) over (5.40.0-7) ...
118s Setting up perl-base (5.40.0-8) ...
118s (Reading database ... 
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(Reading database ... 59609 files and directories currently installed.)
118s Preparing to unpack .../00-perl-modules-5.40_5.40.0-8_all.deb ...
118s Unpacking perl-modules-5.40 (5.40.0-8) over (5.40.0-7) ...
119s Selecting previously unselected package sgml-base.
119s Preparing to unpack .../01-sgml-base_1.31_all.deb ...
119s Unpacking sgml-base (1.31) ...
119s Preparing to unpack .../02-ubuntu-minimal_1.544_armhf.deb ...
119s Unpacking ubuntu-minimal (1.544) over (1.543) ...
119s Selecting previously unselected package python3-distro-info.
119s Preparing to unpack .../03-python3-distro-info_1.12_all.deb ...
119s Unpacking python3-distro-info (1.12) ...
119s Preparing to unpack .../04-wget_1.24.5-2ubuntu1_armhf.deb ...
119s Unpacking wget (1.24.5-2ubuntu1) over (1.24.5-1ubuntu2) ...
119s Preparing to unpack .../05-ubuntu-standard_1.544_armhf.deb ...
119s Unpacking ubuntu-standard (1.544) over (1.543) ...
119s Selecting previously unselected package libstemmer0d:armhf.
119s Preparing to unpack .../06-libstemmer0d_2.2.0-4build1_armhf.deb ...
119s Unpacking libstemmer0d:armhf (2.2.0-4build1) ...
119s Selecting previously unselected package libappstream5:armhf.
119s Preparing to unpack .../07-libappstream5_1.0.3-1_armhf.deb ...
119s Unpacking libappstream5:armhf (1.0.3-1) ...
119s Selecting previously unselected package appstream.
119s Preparing to unpack .../08-appstream_1.0.3-1_armhf.deb ...
119s Unpacking appstream (1.0.3-1) ...
119s Preparing to unpack .../09-cloud-init_24.4-0ubuntu1_all.deb ...
119s Unpacking cloud-init (24.4-0ubuntu1) over (24.4~3+really24.3.1-0ubuntu4) ...
119s dpkg: warning: unable to delete old directory '/etc/cloud/templates': Directory not empty
119s dpkg: warning: unable to delete old directory '/etc/cloud/cloud.cfg.d': Directory not empty
119s dpkg: warning: unable to delete old directory '/etc/cloud': Directory not empty
119s Selecting previously unselected package cloud-init-base.
119s Preparing to unpack .../10-cloud-init-base_24.4-0ubuntu1_all.deb ...
119s awk: fatal: cannot open file `/etc/fstab' for reading: No such file or directory
120s Unpacking cloud-init-base (24.4-0ubuntu1) ...
120s Preparing to unpack .../11-dracut-install_105-2ubuntu3_armhf.deb ...
120s Unpacking dracut-install (105-2ubuntu3) over (105-2ubuntu2) ...
120s Selecting previously unselected package libpackagekit-glib2-18:armhf.
120s Preparing to unpack .../12-libpackagekit-glib2-18_1.3.0-2_armhf.deb ...
120s Unpacking libpackagekit-glib2-18:armhf (1.3.0-2) ...
120s Selecting previously unselected package gir1.2-packagekitglib-1.0.
120s Preparing to unpack .../13-gir1.2-packagekitglib-1.0_1.3.0-2_armhf.deb ...
120s Unpacking gir1.2-packagekitglib-1.0 (1.3.0-2) ...
120s Selecting previously unselected package libduktape207:armhf.
120s Preparing to unpack .../14-libduktape207_2.7.0+tests-0ubuntu3_armhf.deb ...
120s Unpacking libduktape207:armhf (2.7.0+tests-0ubuntu3) ...
120s Selecting previously unselected package libglib2.0-bin.
120s Preparing to unpack .../15-libglib2.0-bin_2.82.2-3_armhf.deb ...
120s Unpacking libglib2.0-bin (2.82.2-3) ...
120s Selecting previously unselected package libunwind8:armhf.
120s Preparing to unpack .../16-libunwind8_1.6.2-3.1_armhf.deb ...
120s Unpacking libunwind8:armhf (1.6.2-3.1) ...
120s Selecting previously unselected package libgstreamer1.0-0:armhf.
120s Preparing to unpack .../17-libgstreamer1.0-0_1.24.9-1_armhf.deb ...
120s Unpacking libgstreamer1.0-0:armhf (1.24.9-1) ...
120s Selecting previously unselected package xml-core.
120s Preparing to unpack .../18-xml-core_0.19_all.deb ...
120s Unpacking xml-core (0.19) ...
120s Selecting previously unselected package polkitd.
120s Preparing to unpack .../19-polkitd_125-2ubuntu1_armhf.deb ...
120s Unpacking polkitd (125-2ubuntu1) ...
120s Selecting previously unselected package packagekit.
120s Preparing to unpack .../20-packagekit_1.3.0-2_armhf.deb ...
120s Unpacking packagekit (1.3.0-2) ...
120s Selecting previously unselected package packagekit-tools.
120s Preparing to unpack .../21-packagekit-tools_1.3.0-2_armhf.deb ...
120s Unpacking packagekit-tools (1.3.0-2) ...
120s Selecting previously unselected package python3-software-properties.
120s Preparing to unpack .../22-python3-software-properties_0.105_all.deb ...
120s Unpacking python3-software-properties (0.105) ...
120s Selecting previously unselected package software-properties-common.
120s Preparing to unpack .../23-software-properties-common_0.105_all.deb ...
120s Unpacking software-properties-common (0.105) ...
120s Selecting previously unselected package unattended-upgrades.
120s Preparing to unpack .../24-unattended-upgrades_2.9.1+nmu4ubuntu1_all.deb ...
120s Unpacking unattended-upgrades (2.9.1+nmu4ubuntu1) ...
120s Setting up wget (1.24.5-2ubuntu1) ...
120s Setting up ubuntu-minimal (1.544) ...
120s Setting up libglib2.0-bin (2.82.2-3) ...
120s Setting up libpackagekit-glib2-18:armhf (1.3.0-2) ...
120s Setting up ubuntu-standard (1.544) ...
120s Setting up libunwind8:armhf (1.6.2-3.1) ...
120s Setting up cloud-init-base (24.4-0ubuntu1) ...
122s Setting up gir1.2-packagekitglib-1.0 (1.3.0-2) ...
122s Setting up python3-software-properties (0.105) ...
122s Setting up dracut-install (105-2ubuntu3) ...
122s Setting up perl-modules-5.40 (5.40.0-8) ...
122s Setting up libduktape207:armhf (2.7.0+tests-0ubuntu3) ...
122s Setting up sgml-base (1.31) ...
122s Setting up libstemmer0d:armhf (2.2.0-4build1) ...
122s Setting up python3-distro-info (1.12) ...
122s Setting up libgstreamer1.0-0:armhf (1.24.9-1) ...
122s Setcap worked! gst-ptp-helper is not suid!
122s Setting up cloud-init (24.4-0ubuntu1) ...
122s Setting up libappstream5:armhf (1.0.3-1) ...
122s Setting up libperl5.40:armhf (5.40.0-8) ...
122s Setting up unattended-upgrades (2.9.1+nmu4ubuntu1) ...
122s 
122s Creating config file /etc/apt/apt.conf.d/20auto-upgrades with new version
123s 
123s Creating config file /etc/apt/apt.conf.d/50unattended-upgrades with new version
123s Created symlink '/etc/systemd/system/multi-user.target.wants/unattended-upgrades.service' → '/usr/lib/systemd/system/unattended-upgrades.service'.
123s Synchronizing state of unattended-upgrades.service with SysV service script with /usr/lib/systemd/systemd-sysv-install.
123s Executing: /usr/lib/systemd/systemd-sysv-install enable unattended-upgrades
124s Setting up perl (5.40.0-8) ...
124s Setting up appstream (1.0.3-1) ...
124s ✔ Metadata cache was updated successfully.
124s Setting up xml-core (0.19) ...
124s Processing triggers for install-info (7.1.1-1) ...
125s Processing triggers for libc-bin (2.40-1ubuntu3) ...
125s Processing triggers for rsyslog (8.2406.0-1ubuntu2) ...
125s Processing triggers for man-db (2.13.0-1) ...
126s Processing triggers for dbus (1.14.10-4ubuntu5) ...
126s Processing triggers for sgml-base (1.31) ...
126s Setting up polkitd (125-2ubuntu1) ...
126s Setting up packagekit (1.3.0-2) ...
127s Created symlink '/etc/systemd/user/sockets.target.wants/pk-debconf-helper.socket' → '/usr/lib/systemd/user/pk-debconf-helper.socket'.
127s Setting up packagekit-tools (1.3.0-2) ...
127s Setting up software-properties-common (0.105) ...
127s Processing triggers for dbus (1.14.10-4ubuntu5) ...
127s Reading package lists...
127s Building dependency tree...
127s Reading state information...
128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
130s autopkgtest [20:58:02]: rebooting testbed after setup commands that affected boot
202s autopkgtest [20:59:14]: testbed running kernel: Linux 6.8.0-49-generic #49~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Nov  6 18:12:14 UTC 2
231s autopkgtest [20:59:43]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-biocmanager
243s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-biocmanager 1.30.25+dfsg-1 (dsc) [2348 B]
243s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-biocmanager 1.30.25+dfsg-1 (tar) [187 kB]
243s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-biocmanager 1.30.25+dfsg-1 (diff) [6156 B]
243s gpgv: Signature made Thu Sep 19 23:35:48 2024 UTC
243s gpgv:                using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502
243s gpgv:                issuer "plessy@debian.org"
243s gpgv: Can't check signature: No public key
243s dpkg-source: warning: cannot verify inline signature for ./r-cran-biocmanager_1.30.25+dfsg-1.dsc: no acceptable signature found
243s autopkgtest [20:59:55]: testing package r-cran-biocmanager version 1.30.25+dfsg-1
247s autopkgtest [20:59:59]: build not needed
252s autopkgtest [21:00:04]: test run-unit-test: preparing testbed
264s Reading package lists...
264s Building dependency tree...
264s Reading state information...
265s Starting pkgProblemResolver with broken count: 1
265s Starting 2 pkgProblemResolver with broken count: 1
265s Investigating (0) r-bioc-biocstyle:armhf < none -> 2.34.0+dfsg-1 @un puN Ib >
265s Broken r-bioc-biocstyle:armhf Depends on r-api-bioc-3.20:armhf < none @un H >
265s Broken r-bioc-biocstyle:armhf Depends on r-cran-bookdown:armhf < none | 0.41+dfsg-1 @un uH >
265s   Considering r-cran-bookdown:armhf 1 as a solution to r-bioc-biocstyle:armhf 2
265s   Re-Instated libjs-lunr:armhf
265s   Re-Instated r-cran-bookdown:armhf
265s Broken r-bioc-biocstyle:armhf Depends on texlive-bibtex-extra:armhf < none | 2024.20241115-1 @un uH >
265s   Considering texlive-bibtex-extra:armhf 1 as a solution to r-bioc-biocstyle:armhf 2
265s   Re-Instated tex-common:armhf
265s   Re-Instated libio-string-perl:armhf
265s   Re-Instated liblatex-tounicode-perl:armhf
265s   Re-Instated libbibtex-parser-perl:armhf
265s   Re-Instated libkpathsea6:armhf
265s   Re-Instated libptexenc1:armhf
265s   Re-Instated libsynctex2:armhf
265s   Re-Instated libtexlua53-5:armhf
265s   Re-Instated t1utils:armhf
265s   Re-Instated libmpfi0:armhf
265s   Re-Instated libpotrace0:armhf
265s   Re-Instated libteckit0:armhf
265s   Re-Instated libxmu6:armhf
265s   Re-Instated libxpm4:armhf
265s   Re-Instated libxaw7:armhf
265s   Re-Instated libxi6:armhf
265s   Re-Instated libzzip-0-13t64:armhf
265s   Re-Instated texlive-binaries:armhf
265s   Re-Instated texlive-base:armhf
265s   Re-Instated fonts-lmodern:armhf
265s   Re-Instated texlive-latex-base:armhf
265s   Re-Instated texlive-bibtex-extra:armhf
265s Done
265s Some packages could not be installed. This may mean that you have
265s requested an impossible situation or if you are using the unstable
265s distribution that some required packages have not yet been created
265s or been moved out of Incoming.
265s The following information may help to resolve the situation:
265s 
265s The following packages have unmet dependencies:
265s  r-bioc-biocstyle : Depends: r-api-bioc-3.20 but it is not installable
265s E: Unable to correct problems, you have held broken packages.
265s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed
271s Reading package lists...
271s Building dependency tree...
271s Reading state information...
272s Starting pkgProblemResolver with broken count: 1
272s Starting 2 pkgProblemResolver with broken count: 1
272s Investigating (0) r-bioc-biocstyle:armhf < none -> 2.34.0+dfsg-1 @un puN Ib >
272s Broken r-bioc-biocstyle:armhf Depends on r-api-bioc-3.20:armhf < none @un H >
272s Broken r-bioc-biocstyle:armhf Depends on r-cran-bookdown:armhf < none | 0.41+dfsg-1 @un uH >
272s   Considering r-cran-bookdown:armhf 1 as a solution to r-bioc-biocstyle:armhf 2
272s   Re-Instated libjs-lunr:armhf
272s   Re-Instated r-cran-bookdown:armhf
272s Broken r-bioc-biocstyle:armhf Depends on texlive-bibtex-extra:armhf < none | 2024.20241115-1 @un uH >
272s   Considering texlive-bibtex-extra:armhf 1 as a solution to r-bioc-biocstyle:armhf 2
272s   Re-Instated tex-common:armhf
272s   Re-Instated libio-string-perl:armhf
272s   Re-Instated liblatex-tounicode-perl:armhf
272s   Re-Instated libbibtex-parser-perl:armhf
272s   Re-Instated libkpathsea6:armhf
272s   Re-Instated libptexenc1:armhf
272s   Re-Instated libsynctex2:armhf
272s   Re-Instated libtexlua53-5:armhf
272s   Re-Instated t1utils:armhf
272s   Re-Instated libmpfi0:armhf
272s   Re-Instated libpotrace0:armhf
272s   Re-Instated libteckit0:armhf
272s   Re-Instated libxmu6:armhf
272s   Re-Instated libxpm4:armhf
272s   Re-Instated libxaw7:armhf
272s   Re-Instated libxi6:armhf
272s   Re-Instated libzzip-0-13t64:armhf
272s   Re-Instated texlive-binaries:armhf
272s   Re-Instated texlive-base:armhf
272s   Re-Instated fonts-lmodern:armhf
272s   Re-Instated texlive-latex-base:armhf
272s   Re-Instated texlive-bibtex-extra:armhf
272s Done
272s Some packages could not be installed. This may mean that you have
272s requested an impossible situation or if you are using the unstable
272s distribution that some required packages have not yet been created
272s or been moved out of Incoming.
272s The following information may help to resolve the situation:
272s 
272s The following packages have unmet dependencies:
272s  r-bioc-biocstyle : Depends: r-api-bioc-3.20 but it is not installable
272s E: Unable to correct problems, you have held broken packages.
272s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs
274s Reading package lists...
275s Building dependency tree...
275s Reading state information...
275s Starting pkgProblemResolver with broken count: 1
275s Starting 2 pkgProblemResolver with broken count: 1
275s Investigating (0) r-bioc-biocstyle:armhf < none -> 2.34.0+dfsg-1 @un puN Ib >
275s Broken r-bioc-biocstyle:armhf Depends on r-api-bioc-3.20:armhf < none @un H >
275s Broken r-bioc-biocstyle:armhf Depends on r-cran-bookdown:armhf < none | 0.41+dfsg-1 @un uH >
275s   Considering r-cran-bookdown:armhf 1 as a solution to r-bioc-biocstyle:armhf 10000
275s   Re-Instated libjs-lunr:armhf
275s   Re-Instated r-cran-bookdown:armhf
275s Broken r-bioc-biocstyle:armhf Depends on texlive-bibtex-extra:armhf < none | 2024.20241115-1 @un uH >
275s   Considering texlive-bibtex-extra:armhf 1 as a solution to r-bioc-biocstyle:armhf 10000
275s   Re-Instated tex-common:armhf
275s   Re-Instated libio-string-perl:armhf
275s   Re-Instated liblatex-tounicode-perl:armhf
275s   Re-Instated libbibtex-parser-perl:armhf
275s   Re-Instated libkpathsea6:armhf
275s   Re-Instated libptexenc1:armhf
275s   Re-Instated libsynctex2:armhf
275s   Re-Instated libtexlua53-5:armhf
275s   Re-Instated t1utils:armhf
275s   Re-Instated libmpfi0:armhf
275s   Re-Instated libpotrace0:armhf
275s   Re-Instated libteckit0:armhf
275s   Re-Instated libxmu6:armhf
275s   Re-Instated libxpm4:armhf
275s   Re-Instated libxaw7:armhf
275s   Re-Instated libxi6:armhf
275s   Re-Instated libzzip-0-13t64:armhf
275s   Re-Instated texlive-binaries:armhf
275s   Re-Instated texlive-base:armhf
275s   Re-Instated fonts-lmodern:armhf
275s   Re-Instated texlive-latex-base:armhf
275s   Re-Instated texlive-bibtex-extra:armhf
275s Done
275s Some packages could not be installed. This may mean that you have
275s requested an impossible situation or if you are using the unstable
275s distribution that some required packages have not yet been created
275s or been moved out of Incoming.
275s The following information may help to resolve the situation:
275s 
275s The following packages have unmet dependencies:
276s  r-bioc-biocstyle : Depends: r-api-bioc-3.20 but it is not installable
276s E: Unable to correct problems, you have held broken packages.
276s autopkgtest [21:00:28]: test pkg-r-autopkgtest: preparing testbed
276s run-unit-test        FAIL badpkg
276s blame: r-cran-biocmanager
276s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.
331s autopkgtest [21:01:23]: testbed dpkg architecture: armhf
333s autopkgtest [21:01:25]: testbed apt version: 2.9.14ubuntu1
333s autopkgtest [21:01:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup
341s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
341s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [54.5 kB]
341s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.1 kB]
341s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [821 kB]
341s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B]
341s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [67.7 kB]
341s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf Packages [928 B]
341s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [589 kB]
341s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [6432 B]
342s Fetched 1637 kB in 1s (1484 kB/s)
342s Reading package lists...
357s tee: /proc/self/fd/2: Permission denied
381s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
381s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
381s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
381s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
382s Reading package lists...
382s Reading package lists...
383s Building dependency tree...
383s Reading state information...
383s Calculating upgrade...
384s The following NEW packages will be installed:
384s   appstream cloud-init-base gir1.2-packagekitglib-1.0 libappstream5
384s   libduktape207 libglib2.0-bin libgstreamer1.0-0 libpackagekit-glib2-18
384s   libstemmer0d libunwind8 packagekit packagekit-tools polkitd
384s   python3-distro-info python3-software-properties sgml-base
384s   software-properties-common unattended-upgrades xml-core
384s The following packages will be upgraded:
384s   cloud-init dracut-install libperl5.40 perl perl-base perl-modules-5.40
384s   ubuntu-minimal ubuntu-standard wget
384s 9 upgraded, 19 newly installed, 0 to remove and 0 not upgraded.
384s Need to get 12.9 MB of archives.
384s After this operation, 7910 kB of additional disk space will be used.
384s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-8 [4137 kB]
385s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-8 [262 kB]
385s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-8 [1674 kB]
385s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-8 [3214 kB]
385s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf sgml-base all 1.31 [11.4 kB]
385s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf ubuntu-minimal armhf 1.544 [11.3 kB]
385s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf python3-distro-info all 1.12 [7754 B]
385s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf wget armhf 1.24.5-2ubuntu1 [326 kB]
385s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf ubuntu-standard armhf 1.544 [11.3 kB]
385s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libstemmer0d armhf 2.2.0-4build1 [130 kB]
385s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libappstream5 armhf 1.0.3-1 [209 kB]
385s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf appstream armhf 1.0.3-1 [64.2 kB]
385s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf cloud-init all 24.4-0ubuntu1 [2088 B]
385s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf cloud-init-base all 24.4-0ubuntu1 [612 kB]
385s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf dracut-install armhf 105-2ubuntu3 [37.6 kB]
385s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libpackagekit-glib2-18 armhf 1.3.0-2 [109 kB]
385s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf gir1.2-packagekitglib-1.0 armhf 1.3.0-2 [25.5 kB]
385s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libduktape207 armhf 2.7.0+tests-0ubuntu3 [123 kB]
385s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libglib2.0-bin armhf 2.82.2-3 [92.3 kB]
385s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libunwind8 armhf 1.6.2-3.1 [47.6 kB]
385s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libgstreamer1.0-0 armhf 1.24.9-1 [1136 kB]
385s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf xml-core all 0.19 [20.3 kB]
385s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf polkitd armhf 125-2ubuntu1 [91.5 kB]
385s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf packagekit armhf 1.3.0-2 [430 kB]
385s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf packagekit-tools armhf 1.3.0-2 [27.7 kB]
385s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf python3-software-properties all 0.105 [30.3 kB]
385s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf software-properties-common all 0.105 [16.5 kB]
385s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf unattended-upgrades all 2.9.1+nmu4ubuntu1 [51.2 kB]
386s Preconfiguring packages ...
386s Fetched 12.9 MB in 1s (10.4 MB/s)
386s (Reading database ... 
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(Reading database ... 59609 files and directories currently installed.)
386s Preparing to unpack .../libperl5.40_5.40.0-8_armhf.deb ...
386s Unpacking libperl5.40:armhf (5.40.0-8) over (5.40.0-7) ...
386s Preparing to unpack .../perl_5.40.0-8_armhf.deb ...
386s Unpacking perl (5.40.0-8) over (5.40.0-7) ...
386s Preparing to unpack .../perl-base_5.40.0-8_armhf.deb ...
386s Unpacking perl-base (5.40.0-8) over (5.40.0-7) ...
386s Setting up perl-base (5.40.0-8) ...
386s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 59609 files and directories currently installed.)
386s Preparing to unpack .../00-perl-modules-5.40_5.40.0-8_all.deb ...
386s Unpacking perl-modules-5.40 (5.40.0-8) over (5.40.0-7) ...
387s Selecting previously unselected package sgml-base.
387s Preparing to unpack .../01-sgml-base_1.31_all.deb ...
387s Unpacking sgml-base (1.31) ...
387s Preparing to unpack .../02-ubuntu-minimal_1.544_armhf.deb ...
387s Unpacking ubuntu-minimal (1.544) over (1.543) ...
387s Selecting previously unselected package python3-distro-info.
387s Preparing to unpack .../03-python3-distro-info_1.12_all.deb ...
387s Unpacking python3-distro-info (1.12) ...
387s Preparing to unpack .../04-wget_1.24.5-2ubuntu1_armhf.deb ...
387s Unpacking wget (1.24.5-2ubuntu1) over (1.24.5-1ubuntu2) ...
387s Preparing to unpack .../05-ubuntu-standard_1.544_armhf.deb ...
387s Unpacking ubuntu-standard (1.544) over (1.543) ...
387s Selecting previously unselected package libstemmer0d:armhf.
387s Preparing to unpack .../06-libstemmer0d_2.2.0-4build1_armhf.deb ...
387s Unpacking libstemmer0d:armhf (2.2.0-4build1) ...
387s Selecting previously unselected package libappstream5:armhf.
387s Preparing to unpack .../07-libappstream5_1.0.3-1_armhf.deb ...
387s Unpacking libappstream5:armhf (1.0.3-1) ...
387s Selecting previously unselected package appstream.
387s Preparing to unpack .../08-appstream_1.0.3-1_armhf.deb ...
387s Unpacking appstream (1.0.3-1) ...
387s Preparing to unpack .../09-cloud-init_24.4-0ubuntu1_all.deb ...
387s Unpacking cloud-init (24.4-0ubuntu1) over (24.4~3+really24.3.1-0ubuntu4) ...
387s dpkg: warning: unable to delete old directory '/etc/cloud/templates': Directory not empty
387s dpkg: warning: unable to delete old directory '/etc/cloud/cloud.cfg.d': Directory not empty
387s dpkg: warning: unable to delete old directory '/etc/cloud': Directory not empty
387s Selecting previously unselected package cloud-init-base.
387s Preparing to unpack .../10-cloud-init-base_24.4-0ubuntu1_all.deb ...
387s awk: fatal: cannot open file `/etc/fstab' for reading: No such file or directory
388s Unpacking cloud-init-base (24.4-0ubuntu1) ...
388s Preparing to unpack .../11-dracut-install_105-2ubuntu3_armhf.deb ...
388s Unpacking dracut-install (105-2ubuntu3) over (105-2ubuntu2) ...
388s Selecting previously unselected package libpackagekit-glib2-18:armhf.
388s Preparing to unpack .../12-libpackagekit-glib2-18_1.3.0-2_armhf.deb ...
388s Unpacking libpackagekit-glib2-18:armhf (1.3.0-2) ...
388s Selecting previously unselected package gir1.2-packagekitglib-1.0.
388s Preparing to unpack .../13-gir1.2-packagekitglib-1.0_1.3.0-2_armhf.deb ...
388s Unpacking gir1.2-packagekitglib-1.0 (1.3.0-2) ...
388s Selecting previously unselected package libduktape207:armhf.
388s Preparing to unpack .../14-libduktape207_2.7.0+tests-0ubuntu3_armhf.deb ...
388s Unpacking libduktape207:armhf (2.7.0+tests-0ubuntu3) ...
388s Selecting previously unselected package libglib2.0-bin.
388s Preparing to unpack .../15-libglib2.0-bin_2.82.2-3_armhf.deb ...
388s Unpacking libglib2.0-bin (2.82.2-3) ...
388s Selecting previously unselected package libunwind8:armhf.
388s Preparing to unpack .../16-libunwind8_1.6.2-3.1_armhf.deb ...
388s Unpacking libunwind8:armhf (1.6.2-3.1) ...
388s Selecting previously unselected package libgstreamer1.0-0:armhf.
388s Preparing to unpack .../17-libgstreamer1.0-0_1.24.9-1_armhf.deb ...
388s Unpacking libgstreamer1.0-0:armhf (1.24.9-1) ...
388s Selecting previously unselected package xml-core.
388s Preparing to unpack .../18-xml-core_0.19_all.deb ...
388s Unpacking xml-core (0.19) ...
388s Selecting previously unselected package polkitd.
388s Preparing to unpack .../19-polkitd_125-2ubuntu1_armhf.deb ...
388s Unpacking polkitd (125-2ubuntu1) ...
388s Selecting previously unselected package packagekit.
388s Preparing to unpack .../20-packagekit_1.3.0-2_armhf.deb ...
388s Unpacking packagekit (1.3.0-2) ...
388s Selecting previously unselected package packagekit-tools.
388s Preparing to unpack .../21-packagekit-tools_1.3.0-2_armhf.deb ...
388s Unpacking packagekit-tools (1.3.0-2) ...
388s Selecting previously unselected package python3-software-properties.
388s Preparing to unpack .../22-python3-software-properties_0.105_all.deb ...
388s Unpacking python3-software-properties (0.105) ...
389s Selecting previously unselected package software-properties-common.
389s Preparing to unpack .../23-software-properties-common_0.105_all.deb ...
389s Unpacking software-properties-common (0.105) ...
389s Selecting previously unselected package unattended-upgrades.
389s Preparing to unpack .../24-unattended-upgrades_2.9.1+nmu4ubuntu1_all.deb ...
389s Unpacking unattended-upgrades (2.9.1+nmu4ubuntu1) ...
389s Setting up wget (1.24.5-2ubuntu1) ...
389s Setting up ubuntu-minimal (1.544) ...
389s Setting up libglib2.0-bin (2.82.2-3) ...
389s Setting up libpackagekit-glib2-18:armhf (1.3.0-2) ...
389s Setting up ubuntu-standard (1.544) ...
389s Setting up libunwind8:armhf (1.6.2-3.1) ...
389s Setting up cloud-init-base (24.4-0ubuntu1) ...
390s Setting up gir1.2-packagekitglib-1.0 (1.3.0-2) ...
390s Setting up python3-software-properties (0.105) ...
391s Setting up dracut-install (105-2ubuntu3) ...
391s Setting up perl-modules-5.40 (5.40.0-8) ...
391s Setting up libduktape207:armhf (2.7.0+tests-0ubuntu3) ...
391s Setting up sgml-base (1.31) ...
391s Setting up libstemmer0d:armhf (2.2.0-4build1) ...
391s Setting up python3-distro-info (1.12) ...
391s Setting up libgstreamer1.0-0:armhf (1.24.9-1) ...
391s Setcap worked! gst-ptp-helper is not suid!
391s Setting up cloud-init (24.4-0ubuntu1) ...
391s Setting up libappstream5:armhf (1.0.3-1) ...
391s Setting up libperl5.40:armhf (5.40.0-8) ...
391s Setting up unattended-upgrades (2.9.1+nmu4ubuntu1) ...
391s 
391s Creating config file /etc/apt/apt.conf.d/20auto-upgrades with new version
391s 
391s Creating config file /etc/apt/apt.conf.d/50unattended-upgrades with new version
392s Created symlink '/etc/systemd/system/multi-user.target.wants/unattended-upgrades.service' → '/usr/lib/systemd/system/unattended-upgrades.service'.
392s Synchronizing state of unattended-upgrades.service with SysV service script with /usr/lib/systemd/systemd-sysv-install.
392s Executing: /usr/lib/systemd/systemd-sysv-install enable unattended-upgrades
393s Setting up perl (5.40.0-8) ...
393s Setting up appstream (1.0.3-1) ...
393s ✔ Metadata cache was updated successfully.
393s Setting up xml-core (0.19) ...
393s Processing triggers for install-info (7.1.1-1) ...
393s Processing triggers for libc-bin (2.40-1ubuntu3) ...
393s Processing triggers for rsyslog (8.2406.0-1ubuntu2) ...
394s Processing triggers for man-db (2.13.0-1) ...
395s Processing triggers for dbus (1.14.10-4ubuntu5) ...
395s Processing triggers for sgml-base (1.31) ...
395s Setting up polkitd (125-2ubuntu1) ...
395s Setting up packagekit (1.3.0-2) ...
395s Created symlink '/etc/systemd/user/sockets.target.wants/pk-debconf-helper.socket' → '/usr/lib/systemd/user/pk-debconf-helper.socket'.
395s Setting up packagekit-tools (1.3.0-2) ...
395s Setting up software-properties-common (0.105) ...
395s Processing triggers for dbus (1.14.10-4ubuntu5) ...
396s Reading package lists...
396s Building dependency tree...
396s Reading state information...
397s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
399s autopkgtest [21:02:31]: rebooting testbed after setup commands that affected boot
501s Reading package lists...
501s Building dependency tree...
501s Reading state information...
502s Starting pkgProblemResolver with broken count: 0
502s Starting 2 pkgProblemResolver with broken count: 0
502s Done
503s The following additional packages will be installed:
503s   build-essential cpp cpp-14 cpp-14-arm-linux-gnueabihf
503s   cpp-arm-linux-gnueabihf dctrl-tools fontconfig fontconfig-config
503s   fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome
503s   fonts-glyphicons-halflings fonts-mathjax g++ g++-14
503s   g++-14-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc gcc-14
503s   gcc-14-arm-linux-gnueabihf gcc-arm-linux-gnueabihf gfortran gfortran-14
503s   gfortran-14-arm-linux-gnueabihf gfortran-arm-linux-gnueabihf icu-devtools
503s   javascript-common libasan8 libblas-dev libblas3 libbz2-dev libc-dev-bin
503s   libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate-dev
503s   libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev
503s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev
503s   libisl23 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
503s   libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
503s   libjs-highlight.js libjs-jquery libjs-jquery-datatables
503s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax
503s   libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify
503s   libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3
503s   liblerc4 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0
503s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0
503s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
503s   libpng-dev libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6
503s   libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7
503s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
503s   linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css
503s   pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core
503s   r-base-dev r-bioc-biocgenerics r-bioc-biocversion r-cran-base64enc
503s   r-cran-biocmanager r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr
503s   r-cran-cli r-cran-commonmark r-cran-crayon r-cran-curl r-cran-desc
503s   r-cran-diffobj r-cran-digest r-cran-evaluate r-cran-fastmap
503s   r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools
503s   r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later
503s   r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime
503s   r-cran-pkgbuild r-cran-pkgkitten r-cran-pkgload r-cran-praise
503s   r-cran-processx r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs
503s   r-cran-rcpp r-cran-remotes r-cran-rlang r-cran-rmarkdown r-cran-rprojroot
503s   r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-testthat r-cran-tinytex
503s   r-cran-waldo r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml rpcsvc-proto
503s   unzip x11-common xdg-utils zip zlib1g-dev
503s Suggested packages:
503s   cpp-doc gcc-14-locales cpp-14-doc debtags gcc-14-doc gcc-multilib
503s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
503s   gdb-arm-linux-gnueabihf gfortran-doc gfortran-14-doc libcoarrays-dev apache2
503s   | lighttpd | httpd liblapack-doc libc-devtools glibc-doc icu-doc
503s   libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc
503s   liblzma-doc ncurses-doc readline-doc libstdc++-14-doc tcl8.6 tk8.6 nodejs
503s   texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc
503s   texlive-latex-extra context wkhtmltopdf librsvg2-bin groff ghc php python
503s   ruby libjs-katex citation-style-language-styles elpa-ess r-doc-info
503s   | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
503s   texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra
503s   texlive-extra-utils texinfo r-bioc-biobase r-bioc-s4vectors r-bioc-iranges
503s   r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools
503s   r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit
503s   r-cran-rstudioapi r-cran-getopt r-cran-covr r-cran-httr r-cran-roxygen2
503s   r-cran-inline r-cran-plm r-cran-zoo r-cran-survival
503s Recommended packages:
503s   bzip2-doc manpages manpages-dev node-jquery libpng-tools r-recommended
503s   r-doc-html r-bioc-biocstyle r-cran-covr r-cran-future r-cran-ggplot2
503s   r-cran-thematic r-cran-mockery r-cran-spelling r-cran-htmlwidgets
503s   r-cran-rstudioapi r-cran-tibble r-cran-whoami r-cran-xml2 r-cran-webutils
503s   r-cran-gh r-cran-lattice r-cran-dplyr r-cran-rsvg r-cran-pillar r-cran-vctrs
503s   r-cran-dbi r-cran-rsqlite r-cran-markdown r-cran-testit r-cran-cairo
503s   r-cran-ragg r-cran-httr r-cran-r.rsp r-cran-sf r-cran-codetools
503s   r-cran-formatr r-cran-gridsvg r-cran-jpeg r-cran-magick r-cran-png
503s   r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-webshot r-cran-svglite
503s   node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-cpp11 r-cran-bitops
503s   r-cran-mathjaxr r-cran-usethis r-cran-webfakes r-cran-purrr r-cran-pingr
503s   r-cran-brew r-cran-git2r r-cran-dygraphs r-cran-rsconnect r-cran-downlit
503s   r-cran-mockr r-cran-dt r-cran-bit64 r-cran-renv r-cran-runit
503s   libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
503s   x11-xserver-utils
503s The following NEW packages will be installed:
503s   autopkgtest-satdep build-essential cpp cpp-14 cpp-14-arm-linux-gnueabihf
503s   cpp-arm-linux-gnueabihf dctrl-tools fontconfig fontconfig-config
503s   fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome
503s   fonts-glyphicons-halflings fonts-mathjax g++ g++-14
503s   g++-14-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc gcc-14
503s   gcc-14-arm-linux-gnueabihf gcc-arm-linux-gnueabihf gfortran gfortran-14
503s   gfortran-14-arm-linux-gnueabihf gfortran-arm-linux-gnueabihf icu-devtools
503s   javascript-common libasan8 libblas-dev libblas3 libbz2-dev libc-dev-bin
503s   libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate-dev
503s   libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev
503s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev
503s   libisl23 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
503s   libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
503s   libjs-highlight.js libjs-jquery libjs-jquery-datatables
503s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax
503s   libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify
503s   libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3
503s   liblerc4 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0
503s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0
503s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
503s   libpng-dev libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6
503s   libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7
503s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
503s   linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css
503s   pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core
503s   r-base-dev r-bioc-biocgenerics r-bioc-biocversion r-cran-base64enc
503s   r-cran-biocmanager r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr
503s   r-cran-cli r-cran-commonmark r-cran-crayon r-cran-curl r-cran-desc
503s   r-cran-diffobj r-cran-digest r-cran-evaluate r-cran-fastmap
503s   r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools
503s   r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later
503s   r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise r-cran-mime
503s   r-cran-pkgbuild r-cran-pkgkitten r-cran-pkgload r-cran-praise
503s   r-cran-processx r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs
503s   r-cran-rcpp r-cran-remotes r-cran-rlang r-cran-rmarkdown r-cran-rprojroot
503s   r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-testthat r-cran-tinytex
503s   r-cran-waldo r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml rpcsvc-proto
503s   unzip x11-common xdg-utils zip zlib1g-dev
503s 0 upgraded, 185 newly installed, 0 to remove and 0 not upgraded.
503s Need to get 192 MB/192 MB of archives.
503s After this operation, 680 MB of additional disk space will be used.
503s Get:1 /tmp/autopkgtest.dQ9dJr/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [772 B]
503s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libc-dev-bin armhf 2.40-1ubuntu3 [19.2 kB]
503s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf linux-libc-dev armhf 6.11.0-8.8 [1628 kB]
504s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libcrypt-dev armhf 1:4.4.36-5 [119 kB]
504s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB]
504s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libc6-dev armhf 2.40-1ubuntu3 [1370 kB]
504s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libisl23 armhf 0.27-1 [546 kB]
504s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libmpc3 armhf 1.3.1-1build2 [47.1 kB]
504s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14-arm-linux-gnueabihf armhf 14.2.0-8ubuntu1 [9219 kB]
504s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14 armhf 14.2.0-8ubuntu1 [1032 B]
504s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-arm-linux-gnueabihf armhf 4:14.1.0-2ubuntu1 [5464 B]
504s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf cpp armhf 4:14.1.0-2ubuntu1 [22.4 kB]
504s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libcc1-0 armhf 14.2.0-8ubuntu1 [43.3 kB]
504s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB]
504s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libasan8 armhf 14.2.0-8ubuntu1 [2901 kB]
504s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libubsan1 armhf 14.2.0-8ubuntu1 [1150 kB]
504s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-14-dev armhf 14.2.0-8ubuntu1 [897 kB]
504s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-arm-linux-gnueabihf armhf 14.2.0-8ubuntu1 [18.0 MB]
505s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14 armhf 14.2.0-8ubuntu1 [498 kB]
505s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-arm-linux-gnueabihf armhf 4:14.1.0-2ubuntu1 [1222 B]
505s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf gcc armhf 4:14.1.0-2ubuntu1 [5002 B]
505s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++-14-dev armhf 14.2.0-8ubuntu1 [2569 kB]
505s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14-arm-linux-gnueabihf armhf 14.2.0-8ubuntu1 [10.5 MB]
505s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14 armhf 14.2.0-8ubuntu1 [19.9 kB]
505s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf g++-arm-linux-gnueabihf armhf 4:14.1.0-2ubuntu1 [968 B]
505s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf g++ armhf 4:14.1.0-2ubuntu1 [1084 B]
505s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf build-essential armhf 12.10ubuntu1 [4928 B]
505s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf dctrl-tools armhf 2.24-3build3 [94.7 kB]
505s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB]
505s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB]
505s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB]
505s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB]
505s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB]
505s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig armhf 2.15.0-1.1ubuntu2 [189 kB]
505s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
505s Get:36 http://ftpmaster.internal/ubuntu plucky/universe armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
505s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
505s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB]
505s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran-14-dev armhf 14.2.0-8ubuntu1 [370 kB]
505s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf gfortran-14-arm-linux-gnueabihf armhf 14.2.0-8ubuntu1 [9770 kB]
505s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf gfortran-14 armhf 14.2.0-8ubuntu1 [11.9 kB]
505s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf gfortran-arm-linux-gnueabihf armhf 4:14.1.0-2ubuntu1 [1024 B]
505s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf gfortran armhf 4:14.1.0-2ubuntu1 [1164 B]
505s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf icu-devtools armhf 74.2-1ubuntu4 [202 kB]
505s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf javascript-common all 11+nmu1 [5936 B]
505s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-4 [126 kB]
505s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf libblas-dev armhf 3.12.0-4 [134 kB]
505s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf libbz2-dev armhf 1.0.8-6 [30.9 kB]
505s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB]
505s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB]
505s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B]
505s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB]
505s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB]
505s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libdatrie1 armhf 0.2.13-3build1 [15.7 kB]
505s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.22-1 [38.9 kB]
505s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate-dev armhf 1.22-1 [45.0 kB]
505s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB]
505s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.0.1-1 [463 kB]
505s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB]
506s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf libice6 armhf 2:1.1.1-1 [36.5 kB]
506s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf libicu-dev armhf 74.2-1ubuntu4 [11.6 MB]
506s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB]
506s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8-dev armhf 2.1.5-3ubuntu2 [265 kB]
506s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B]
506s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8-dev armhf 8c-2ubuntu11 [1484 B]
506s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-dev armhf 8c-2ubuntu11 [1482 B]
506s Get:67 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
506s Get:68 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
506s Get:69 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
506s Get:70 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-d3 all 3.5.17-4 [132 kB]
506s Get:71 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-es5-shim all 4.6.7-2 [39.8 kB]
506s Get:72 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
506s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
506s Get:74 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
506s Get:75 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
506s Get:76 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
506s Get:77 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
506s Get:78 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
506s Get:79 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
506s Get:80 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
506s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-4 [2086 kB]
506s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack-dev armhf 3.12.0-4 [2203 kB]
506s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB]
506s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf liblua5.4-0 armhf 5.4.6-3build2 [133 kB]
506s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf libncurses-dev armhf 6.5-2 [501 kB]
506s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf libthai-data all 0.1.29-2build1 [158 kB]
506s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf libthai0 armhf 0.1.29-2build1 [15.2 kB]
506s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf libpango-1.0-0 armhf 1.54.0+ds-3 [212 kB]
506s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf libpangoft2-1.0-0 armhf 1.54.0+ds-3 [42.9 kB]
506s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf libpangocairo-1.0-0 armhf 1.54.0+ds-3 [24.8 kB]
506s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf libpaper1 armhf 1.1.29build1 [12.6 kB]
506s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf libpaper-utils armhf 1.1.29build1 [8184 B]
506s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-16-0 armhf 10.42-4ubuntu3 [186 kB]
506s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-32-0 armhf 10.42-4ubuntu3 [176 kB]
506s Get:95 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-posix3 armhf 10.42-4ubuntu3 [6178 B]
506s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-dev armhf 10.42-4ubuntu3 [679 kB]
506s Get:97 http://ftpmaster.internal/ubuntu plucky/main armhf libpkgconf3 armhf 1.8.1-4 [26.6 kB]
506s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1ubuntu1 [880 kB]
506s Get:99 http://ftpmaster.internal/ubuntu plucky/main armhf libpng-dev armhf 1.6.44-2 [252 kB]
506s Get:100 http://ftpmaster.internal/ubuntu plucky/main armhf libreadline-dev armhf 8.2-5 [154 kB]
506s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB]
506s Get:102 http://ftpmaster.internal/ubuntu plucky/main armhf libsm6 armhf 2:1.2.4-1 [15.1 kB]
507s Get:103 http://ftpmaster.internal/ubuntu plucky/main armhf libtcl8.6 armhf 8.6.15+dfsg-2 [909 kB]
507s Get:104 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB]
507s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB]
507s Get:106 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB]
507s Get:107 http://ftpmaster.internal/ubuntu plucky/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB]
507s Get:108 http://ftpmaster.internal/ubuntu plucky/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B]
507s Get:109 http://ftpmaster.internal/ubuntu plucky/main armhf libtk8.6 armhf 8.6.15-1 [685 kB]
507s Get:110 http://ftpmaster.internal/ubuntu plucky/main armhf libxt6t64 armhf 1:1.2.1-1.2build1 [145 kB]
507s Get:111 http://ftpmaster.internal/ubuntu plucky/main armhf zip armhf 3.0-14ubuntu1 [164 kB]
507s Get:112 http://ftpmaster.internal/ubuntu plucky/main armhf unzip armhf 6.0-28ubuntu6 [167 kB]
507s Get:113 http://ftpmaster.internal/ubuntu plucky/main armhf xdg-utils all 1.2.1-0ubuntu1 [67.5 kB]
507s Get:114 http://ftpmaster.internal/ubuntu plucky/universe armhf r-base-core armhf 4.4.2-1 [28.1 MB]
508s Get:115 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-littler armhf 0.3.20-1 [82.6 kB]
508s Get:116 http://ftpmaster.internal/ubuntu plucky/universe armhf littler all 0.3.20-1 [2486 B]
508s Get:117 http://ftpmaster.internal/ubuntu plucky/universe armhf node-bootstrap-sass all 3.4.3-2 [187 kB]
508s Get:118 http://ftpmaster.internal/ubuntu plucky/universe armhf node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
508s Get:119 http://ftpmaster.internal/ubuntu plucky/universe armhf node-normalize.css all 8.0.1-5 [10.8 kB]
508s Get:120 http://ftpmaster.internal/ubuntu plucky/universe armhf pandoc-data all 3.1.11.1-3build1 [78.8 kB]
508s Get:121 http://ftpmaster.internal/ubuntu plucky/universe armhf pandoc armhf 3.1.11.1+ds-2 [36.7 MB]
510s Get:122 http://ftpmaster.internal/ubuntu plucky/main armhf liblzma-dev armhf 5.6.3-1 [166 kB]
510s Get:123 http://ftpmaster.internal/ubuntu plucky/main armhf pkgconf-bin armhf 1.8.1-4 [21.2 kB]
510s Get:124 http://ftpmaster.internal/ubuntu plucky/main armhf pkgconf armhf 1.8.1-4 [16.8 kB]
510s Get:125 http://ftpmaster.internal/ubuntu plucky/main armhf libtirpc-dev armhf 1.3.4+ds-1.3 [184 kB]
510s Get:126 http://ftpmaster.internal/ubuntu plucky/universe armhf r-base-dev all 4.4.2-1 [4340 B]
510s Get:127 http://ftpmaster.internal/ubuntu plucky/universe armhf pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
510s Get:128 http://ftpmaster.internal/ubuntu plucky/universe armhf r-bioc-biocgenerics all 0.50.0-2 [605 kB]
510s Get:129 http://ftpmaster.internal/ubuntu plucky/universe armhf r-bioc-biocversion all 3.19.1-1 [11.2 kB]
510s Get:130 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-base64enc armhf 0.1-3-3 [27.3 kB]
510s Get:131 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
510s Get:132 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-brio armhf 1.1.5-1 [37.9 kB]
510s Get:133 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-rlang armhf 1.1.4-1 [1702 kB]
510s Get:134 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-fastmap armhf 1.2.0-1 [69.8 kB]
510s Get:135 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-cachem armhf 1.1.0-1 [73.8 kB]
510s Get:136 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-digest armhf 0.6.37-1 [207 kB]
510s Get:137 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-htmltools armhf 0.5.8.1-1 [372 kB]
510s Get:138 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
510s Get:139 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-jsonlite armhf 1.8.9+dfsg-1 [440 kB]
510s Get:140 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-cli armhf 3.6.3-1 [1342 kB]
510s Get:141 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-glue armhf 1.7.0-1 [153 kB]
510s Get:142 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
510s Get:143 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-memoise all 2.0.1-1 [53.9 kB]
510s Get:144 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-mime armhf 0.12-2 [35.5 kB]
510s Get:145 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-fs armhf 1.6.4+dfsg-1 [242 kB]
510s Get:146 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-r6 all 2.5.1-1 [99.0 kB]
510s Get:147 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-rappdirs armhf 0.3.3-1 [47.4 kB]
510s Get:148 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-sass armhf 0.4.9+dfsg-1 [926 kB]
510s Get:149 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-bslib all 0.7.0+dfsg-1 [4255 kB]
510s Get:150 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-ps armhf 1.8.0-1 [390 kB]
510s Get:151 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-processx armhf 3.8.4-1 [347 kB]
510s Get:152 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-callr all 3.7.6-1 [458 kB]
510s Get:153 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-commonmark armhf 1.9.1-1 [110 kB]
510s Get:154 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-crayon all 1.5.2-1 [164 kB]
510s Get:155 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-curl armhf 5.2.1+dfsg-1 [178 kB]
510s Get:156 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-desc all 1.4.3-1 [359 kB]
510s Get:157 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-diffobj armhf 0.3.5-1 [1115 kB]
510s Get:158 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-evaluate all 1.0.0-1 [111 kB]
510s Get:159 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-fontawesome all 0.5.2-1 [1300 kB]
511s Get:160 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-xfun armhf 0.49+dfsg-1 [544 kB]
511s Get:161 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-highr all 0.11+dfsg-1 [38.5 kB]
511s Get:162 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
511s Get:163 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-rcpp armhf 1.0.13-1-1 [1970 kB]
511s Get:164 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-later armhf 1.3.2+dfsg-1 [118 kB]
511s Get:165 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-magrittr armhf 2.0.3-1 [154 kB]
511s Get:166 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-promises armhf 1.3.0+dfsg-1 [285 kB]
511s Get:167 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-httpuv armhf 1.6.15+dfsg-1 [480 kB]
511s Get:168 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-yaml armhf 2.3.10-1 [101 kB]
511s Get:169 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
511s Get:170 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-knitr all 1.49+dfsg-1 [859 kB]
511s Get:171 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-pkgbuild all 1.4.4-1 [212 kB]
511s Get:172 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-rprojroot all 2.0.4-1 [124 kB]
511s Get:173 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-withr all 3.0.2+dfsg-1 [214 kB]
511s Get:174 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-pkgload all 1.4.0-1 [247 kB]
511s Get:175 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-praise all 1.0.0-4build1 [20.3 kB]
511s Get:176 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-remotes all 2.5.0+dfsg-1 [447 kB]
511s Get:177 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-tinytex all 0.53-1 [145 kB]
511s Get:178 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-modernizr all 3.13.0-0.1 [101 kB]
511s Get:179 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-xtable all 1:1.8-4-2 [689 kB]
511s Get:180 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-sourcetools armhf 0.1.7-1-1 [45.7 kB]
511s Get:181 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
511s Get:182 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-shiny all 1.9.1+dfsg-1 [3111 kB]
511s Get:183 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-rmarkdown all 2.28+dfsg-1 [1501 kB]
512s Get:184 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-waldo all 0.6.1-1 [150 kB]
512s Get:185 http://ftpmaster.internal/ubuntu plucky/universe armhf r-cran-testthat armhf 3.2.1.1-1 [1617 kB]
512s Preconfiguring packages ...
512s Fetched 192 MB in 9s (21.7 MB/s)
512s Selecting previously unselected package libc-dev-bin.
512s (Reading database ... 
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512s Preparing to unpack .../000-libc-dev-bin_2.40-1ubuntu3_armhf.deb ...
512s Unpacking libc-dev-bin (2.40-1ubuntu3) ...
512s Selecting previously unselected package linux-libc-dev:armhf.
512s Preparing to unpack .../001-linux-libc-dev_6.11.0-8.8_armhf.deb ...
512s Unpacking linux-libc-dev:armhf (6.11.0-8.8) ...
513s Selecting previously unselected package libcrypt-dev:armhf.
513s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-5_armhf.deb ...
513s Unpacking libcrypt-dev:armhf (1:4.4.36-5) ...
513s Selecting previously unselected package rpcsvc-proto.
513s Preparing to unpack .../003-rpcsvc-proto_1.4.2-0ubuntu7_armhf.deb ...
513s Unpacking rpcsvc-proto (1.4.2-0ubuntu7) ...
513s Selecting previously unselected package libc6-dev:armhf.
513s Preparing to unpack .../004-libc6-dev_2.40-1ubuntu3_armhf.deb ...
513s Unpacking libc6-dev:armhf (2.40-1ubuntu3) ...
513s Selecting previously unselected package libisl23:armhf.
513s Preparing to unpack .../005-libisl23_0.27-1_armhf.deb ...
513s Unpacking libisl23:armhf (0.27-1) ...
513s Selecting previously unselected package libmpc3:armhf.
513s Preparing to unpack .../006-libmpc3_1.3.1-1build2_armhf.deb ...
513s Unpacking libmpc3:armhf (1.3.1-1build2) ...
513s Selecting previously unselected package cpp-14-arm-linux-gnueabihf.
513s Preparing to unpack .../007-cpp-14-arm-linux-gnueabihf_14.2.0-8ubuntu1_armhf.deb ...
513s Unpacking cpp-14-arm-linux-gnueabihf (14.2.0-8ubuntu1) ...
513s Selecting previously unselected package cpp-14.
513s Preparing to unpack .../008-cpp-14_14.2.0-8ubuntu1_armhf.deb ...
513s Unpacking cpp-14 (14.2.0-8ubuntu1) ...
513s Selecting previously unselected package cpp-arm-linux-gnueabihf.
513s Preparing to unpack .../009-cpp-arm-linux-gnueabihf_4%3a14.1.0-2ubuntu1_armhf.deb ...
513s Unpacking cpp-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ...
513s Selecting previously unselected package cpp.
513s Preparing to unpack .../010-cpp_4%3a14.1.0-2ubuntu1_armhf.deb ...
513s Unpacking cpp (4:14.1.0-2ubuntu1) ...
513s Selecting previously unselected package libcc1-0:armhf.
513s Preparing to unpack .../011-libcc1-0_14.2.0-8ubuntu1_armhf.deb ...
513s Unpacking libcc1-0:armhf (14.2.0-8ubuntu1) ...
513s Selecting previously unselected package libgomp1:armhf.
513s Preparing to unpack .../012-libgomp1_14.2.0-8ubuntu1_armhf.deb ...
513s Unpacking libgomp1:armhf (14.2.0-8ubuntu1) ...
513s Selecting previously unselected package libasan8:armhf.
513s Preparing to unpack .../013-libasan8_14.2.0-8ubuntu1_armhf.deb ...
513s Unpacking libasan8:armhf (14.2.0-8ubuntu1) ...
513s Selecting previously unselected package libubsan1:armhf.
513s Preparing to unpack .../014-libubsan1_14.2.0-8ubuntu1_armhf.deb ...
513s Unpacking libubsan1:armhf (14.2.0-8ubuntu1) ...
513s Selecting previously unselected package libgcc-14-dev:armhf.
513s Preparing to unpack .../015-libgcc-14-dev_14.2.0-8ubuntu1_armhf.deb ...
513s Unpacking libgcc-14-dev:armhf (14.2.0-8ubuntu1) ...
513s Selecting previously unselected package gcc-14-arm-linux-gnueabihf.
513s Preparing to unpack .../016-gcc-14-arm-linux-gnueabihf_14.2.0-8ubuntu1_armhf.deb ...
513s Unpacking gcc-14-arm-linux-gnueabihf (14.2.0-8ubuntu1) ...
514s Selecting previously unselected package gcc-14.
514s Preparing to unpack .../017-gcc-14_14.2.0-8ubuntu1_armhf.deb ...
514s Unpacking gcc-14 (14.2.0-8ubuntu1) ...
514s Selecting previously unselected package gcc-arm-linux-gnueabihf.
514s Preparing to unpack .../018-gcc-arm-linux-gnueabihf_4%3a14.1.0-2ubuntu1_armhf.deb ...
514s Unpacking gcc-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ...
514s Selecting previously unselected package gcc.
514s Preparing to unpack .../019-gcc_4%3a14.1.0-2ubuntu1_armhf.deb ...
514s Unpacking gcc (4:14.1.0-2ubuntu1) ...
514s Selecting previously unselected package libstdc++-14-dev:armhf.
514s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-8ubuntu1_armhf.deb ...
514s Unpacking libstdc++-14-dev:armhf (14.2.0-8ubuntu1) ...
514s Selecting previously unselected package g++-14-arm-linux-gnueabihf.
514s Preparing to unpack .../021-g++-14-arm-linux-gnueabihf_14.2.0-8ubuntu1_armhf.deb ...
514s Unpacking g++-14-arm-linux-gnueabihf (14.2.0-8ubuntu1) ...
514s Selecting previously unselected package g++-14.
514s Preparing to unpack .../022-g++-14_14.2.0-8ubuntu1_armhf.deb ...
514s Unpacking g++-14 (14.2.0-8ubuntu1) ...
514s Selecting previously unselected package g++-arm-linux-gnueabihf.
514s Preparing to unpack .../023-g++-arm-linux-gnueabihf_4%3a14.1.0-2ubuntu1_armhf.deb ...
514s Unpacking g++-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ...
514s Selecting previously unselected package g++.
514s Preparing to unpack .../024-g++_4%3a14.1.0-2ubuntu1_armhf.deb ...
514s Unpacking g++ (4:14.1.0-2ubuntu1) ...
514s Selecting previously unselected package build-essential.
514s Preparing to unpack .../025-build-essential_12.10ubuntu1_armhf.deb ...
514s Unpacking build-essential (12.10ubuntu1) ...
515s Selecting previously unselected package dctrl-tools.
515s Preparing to unpack .../026-dctrl-tools_2.24-3build3_armhf.deb ...
515s Unpacking dctrl-tools (2.24-3build3) ...
515s Selecting previously unselected package libfreetype6:armhf.
515s Preparing to unpack .../027-libfreetype6_2.13.3+dfsg-1_armhf.deb ...
515s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ...
515s Selecting previously unselected package fonts-dejavu-mono.
515s Preparing to unpack .../028-fonts-dejavu-mono_2.37-8_all.deb ...
515s Unpacking fonts-dejavu-mono (2.37-8) ...
515s Selecting previously unselected package fonts-dejavu-core.
515s Preparing to unpack .../029-fonts-dejavu-core_2.37-8_all.deb ...
515s Unpacking fonts-dejavu-core (2.37-8) ...
515s Selecting previously unselected package fontconfig-config.
515s Preparing to unpack .../030-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ...
515s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
515s Selecting previously unselected package libfontconfig1:armhf.
515s Preparing to unpack .../031-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ...
515s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ...
515s Selecting previously unselected package fontconfig.
515s Preparing to unpack .../032-fontconfig_2.15.0-1.1ubuntu2_armhf.deb ...
515s Unpacking fontconfig (2.15.0-1.1ubuntu2) ...
515s Selecting previously unselected package fonts-font-awesome.
515s Preparing to unpack .../033-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
515s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
515s Selecting previously unselected package fonts-glyphicons-halflings.
515s Preparing to unpack .../034-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
515s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
515s Selecting previously unselected package fonts-mathjax.
515s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
515s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
515s Selecting previously unselected package libgfortran5:armhf.
515s Preparing to unpack .../036-libgfortran5_14.2.0-8ubuntu1_armhf.deb ...
515s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ...
515s Selecting previously unselected package libgfortran-14-dev:armhf.
515s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-8ubuntu1_armhf.deb ...
515s Unpacking libgfortran-14-dev:armhf (14.2.0-8ubuntu1) ...
515s Selecting previously unselected package gfortran-14-arm-linux-gnueabihf.
515s Preparing to unpack .../038-gfortran-14-arm-linux-gnueabihf_14.2.0-8ubuntu1_armhf.deb ...
515s Unpacking gfortran-14-arm-linux-gnueabihf (14.2.0-8ubuntu1) ...
516s Selecting previously unselected package gfortran-14.
516s Preparing to unpack .../039-gfortran-14_14.2.0-8ubuntu1_armhf.deb ...
516s Unpacking gfortran-14 (14.2.0-8ubuntu1) ...
516s Selecting previously unselected package gfortran-arm-linux-gnueabihf.
516s Preparing to unpack .../040-gfortran-arm-linux-gnueabihf_4%3a14.1.0-2ubuntu1_armhf.deb ...
516s Unpacking gfortran-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ...
516s Selecting previously unselected package gfortran.
516s Preparing to unpack .../041-gfortran_4%3a14.1.0-2ubuntu1_armhf.deb ...
516s Unpacking gfortran (4:14.1.0-2ubuntu1) ...
516s Selecting previously unselected package icu-devtools.
516s Preparing to unpack .../042-icu-devtools_74.2-1ubuntu4_armhf.deb ...
516s Unpacking icu-devtools (74.2-1ubuntu4) ...
516s Selecting previously unselected package javascript-common.
516s Preparing to unpack .../043-javascript-common_11+nmu1_all.deb ...
516s Unpacking javascript-common (11+nmu1) ...
516s Selecting previously unselected package libblas3:armhf.
516s Preparing to unpack .../044-libblas3_3.12.0-4_armhf.deb ...
516s Unpacking libblas3:armhf (3.12.0-4) ...
516s Selecting previously unselected package libblas-dev:armhf.
516s Preparing to unpack .../045-libblas-dev_3.12.0-4_armhf.deb ...
516s Unpacking libblas-dev:armhf (3.12.0-4) ...
516s Selecting previously unselected package libbz2-dev:armhf.
516s Preparing to unpack .../046-libbz2-dev_1.0.8-6_armhf.deb ...
516s Unpacking libbz2-dev:armhf (1.0.8-6) ...
516s Selecting previously unselected package libpixman-1-0:armhf.
516s Preparing to unpack .../047-libpixman-1-0_0.44.0-3_armhf.deb ...
516s Unpacking libpixman-1-0:armhf (0.44.0-3) ...
516s Selecting previously unselected package libxcb-render0:armhf.
516s Preparing to unpack .../048-libxcb-render0_1.17.0-2_armhf.deb ...
516s Unpacking libxcb-render0:armhf (1.17.0-2) ...
516s Selecting previously unselected package libxcb-shm0:armhf.
516s Preparing to unpack .../049-libxcb-shm0_1.17.0-2_armhf.deb ...
516s Unpacking libxcb-shm0:armhf (1.17.0-2) ...
516s Selecting previously unselected package libxrender1:armhf.
516s Preparing to unpack .../050-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ...
516s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ...
516s Selecting previously unselected package libcairo2:armhf.
516s Preparing to unpack .../051-libcairo2_1.18.2-2_armhf.deb ...
516s Unpacking libcairo2:armhf (1.18.2-2) ...
516s Selecting previously unselected package libdatrie1:armhf.
516s Preparing to unpack .../052-libdatrie1_0.2.13-3build1_armhf.deb ...
516s Unpacking libdatrie1:armhf (0.2.13-3build1) ...
516s Selecting previously unselected package libdeflate0:armhf.
516s Preparing to unpack .../053-libdeflate0_1.22-1_armhf.deb ...
516s Unpacking libdeflate0:armhf (1.22-1) ...
516s Selecting previously unselected package libdeflate-dev:armhf.
516s Preparing to unpack .../054-libdeflate-dev_1.22-1_armhf.deb ...
516s Unpacking libdeflate-dev:armhf (1.22-1) ...
516s Selecting previously unselected package libgraphite2-3:armhf.
516s Preparing to unpack .../055-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ...
516s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ...
516s Selecting previously unselected package libharfbuzz0b:armhf.
516s Preparing to unpack .../056-libharfbuzz0b_10.0.1-1_armhf.deb ...
516s Unpacking libharfbuzz0b:armhf (10.0.1-1) ...
516s Selecting previously unselected package x11-common.
516s Preparing to unpack .../057-x11-common_1%3a7.7+23ubuntu3_all.deb ...
516s Unpacking x11-common (1:7.7+23ubuntu3) ...
516s Selecting previously unselected package libice6:armhf.
516s Preparing to unpack .../058-libice6_2%3a1.1.1-1_armhf.deb ...
516s Unpacking libice6:armhf (2:1.1.1-1) ...
516s Selecting previously unselected package libicu-dev:armhf.
516s Preparing to unpack .../059-libicu-dev_74.2-1ubuntu4_armhf.deb ...
516s Unpacking libicu-dev:armhf (74.2-1ubuntu4) ...
517s Selecting previously unselected package libjpeg-turbo8:armhf.
517s Preparing to unpack .../060-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ...
517s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ...
517s Selecting previously unselected package libjpeg-turbo8-dev:armhf.
517s Preparing to unpack .../061-libjpeg-turbo8-dev_2.1.5-3ubuntu2_armhf.deb ...
517s Unpacking libjpeg-turbo8-dev:armhf (2.1.5-3ubuntu2) ...
517s Selecting previously unselected package libjpeg8:armhf.
517s Preparing to unpack .../062-libjpeg8_8c-2ubuntu11_armhf.deb ...
517s Unpacking libjpeg8:armhf (8c-2ubuntu11) ...
517s Selecting previously unselected package libjpeg8-dev:armhf.
517s Preparing to unpack .../063-libjpeg8-dev_8c-2ubuntu11_armhf.deb ...
517s Unpacking libjpeg8-dev:armhf (8c-2ubuntu11) ...
517s Selecting previously unselected package libjpeg-dev:armhf.
517s Preparing to unpack .../064-libjpeg-dev_8c-2ubuntu11_armhf.deb ...
517s Unpacking libjpeg-dev:armhf (8c-2ubuntu11) ...
517s Selecting previously unselected package libjs-bootstrap.
517s Preparing to unpack .../065-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
517s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ...
517s Selecting previously unselected package libjs-popper.js.
517s Preparing to unpack .../066-libjs-popper.js_1.16.1+ds-6_all.deb ...
517s Unpacking libjs-popper.js (1.16.1+ds-6) ...
517s Selecting previously unselected package libjs-bootstrap4.
517s Preparing to unpack .../067-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ...
517s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ...
517s Selecting previously unselected package libjs-d3.
517s Preparing to unpack .../068-libjs-d3_3.5.17-4_all.deb ...
517s Unpacking libjs-d3 (3.5.17-4) ...
517s Selecting previously unselected package libjs-es5-shim.
517s Preparing to unpack .../069-libjs-es5-shim_4.6.7-2_all.deb ...
517s Unpacking libjs-es5-shim (4.6.7-2) ...
517s Selecting previously unselected package libjs-highlight.js.
517s Preparing to unpack .../070-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ...
517s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ...
517s Selecting previously unselected package libjs-jquery.
517s Preparing to unpack .../071-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
517s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
517s Selecting previously unselected package libjs-jquery-datatables.
517s Preparing to unpack .../072-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ...
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520s Selecting previously unselected package pandoc-data.
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521s Selecting previously unselected package liblzma-dev:armhf.
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522s Selecting previously unselected package r-cran-glue.
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522s Selecting previously unselected package r-cran-sass.
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522s Selecting previously unselected package r-cran-bslib.
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523s Selecting previously unselected package r-cran-diffobj.
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523s Selecting previously unselected package r-cran-fontawesome.
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523s Selecting previously unselected package r-cran-xfun.
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523s Selecting previously unselected package r-cran-highr.
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523s Selecting previously unselected package r-cran-pkgkitten.
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523s Selecting previously unselected package r-cran-later.
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523s Selecting previously unselected package r-cran-magrittr.
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523s Selecting previously unselected package r-cran-promises.
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523s Selecting previously unselected package r-cran-httpuv.
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523s Selecting previously unselected package r-cran-yaml.
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523s Selecting previously unselected package libjs-mathjax.
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524s Selecting previously unselected package r-cran-knitr.
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524s Selecting previously unselected package r-cran-pkgbuild.
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524s Selecting previously unselected package r-cran-rprojroot.
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524s Selecting previously unselected package r-cran-withr.
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524s Selecting previously unselected package r-cran-pkgload.
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524s Selecting previously unselected package r-cran-praise.
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525s Selecting previously unselected package r-cran-remotes.
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525s Selecting previously unselected package r-cran-tinytex.
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525s Selecting previously unselected package libjs-modernizr.
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525s Selecting previously unselected package r-cran-xtable.
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529s Regenerating fonts cache... done.
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529s Setting up libtk8.6:armhf (8.6.15-1) ...
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530s Setting up libcairo2:armhf (1.18.2-2) ...
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530s Setting up libpangocairo-1.0-0:armhf (1.54.0+ds-3) ...
530s Setting up r-base-core (4.4.2-1) ...
530s 
530s Creating config file /etc/R/Renviron with new version
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530s Setting up r-cran-sourcetools (0.1.7-1-1) ...
530s Setting up r-cran-ps (1.8.0-1) ...
530s Setting up r-cran-remotes (2.5.0+dfsg-1) ...
530s Setting up r-cran-commonmark (1.9.1-1) ...
530s Setting up r-cran-r6 (2.5.1-1) ...
530s Setting up r-cran-pkgkitten (0.2.4-1) ...
530s Setting up r-cran-magrittr (2.0.3-1) ...
530s Setting up r-cran-rappdirs (0.3.3-1) ...
530s Setting up r-cran-littler (0.3.20-1) ...
530s Setting up r-cran-fs (1.6.4+dfsg-1) ...
530s Setting up r-cran-rcpp (1.0.13-1-1) ...
530s Setting up r-cran-curl (5.2.1+dfsg-1) ...
530s Setting up r-cran-brio (1.1.5-1) ...
530s Setting up r-cran-diffobj (0.3.5-1) ...
530s Setting up r-bioc-biocgenerics (0.50.0-2) ...
530s Setting up r-cran-rlang (1.1.4-1) ...
530s Setting up r-base-dev (4.4.2-1) ...
530s Setting up littler (0.3.20-1) ...
530s Setting up r-cran-xfun (0.49+dfsg-1) ...
530s Setting up r-cran-withr (3.0.2+dfsg-1) ...
530s Setting up r-cran-processx (3.8.4-1) ...
530s Setting up r-cran-mime (0.12-2) ...
530s Setting up r-cran-praise (1.0.0-4build1) ...
530s Setting up r-cran-base64enc (0.1-3-3) ...
530s Setting up r-cran-digest (0.6.37-1) ...
530s Setting up r-cran-yaml (2.3.10-1) ...
530s Setting up r-cran-evaluate (1.0.0-1) ...
530s Setting up r-cran-highr (0.11+dfsg-1) ...
530s Setting up r-cran-glue (1.7.0-1) ...
530s Setting up r-cran-xtable (1:1.8-4-2) ...
530s Setting up r-cran-cli (3.6.3-1) ...
530s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
530s Setting up r-bioc-biocversion (3.19.1-1) ...
530s Setting up r-cran-rprojroot (2.0.4-1) ...
530s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ...
530s Setting up r-cran-fastmap (1.2.0-1) ...
530s Setting up r-cran-jsonlite (1.8.9+dfsg-1) ...
530s Setting up r-cran-waldo (0.6.1-1) ...
530s Setting up r-cran-later (1.3.2+dfsg-1) ...
530s Setting up r-cran-htmltools (0.5.8.1-1) ...
530s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
530s Setting up r-cran-tinytex (0.53-1) ...
530s Setting up r-cran-knitr (1.49+dfsg-1) ...
530s Setting up r-cran-cachem (1.1.0-1) ...
530s Setting up r-cran-sass (0.4.9+dfsg-1) ...
530s Setting up r-cran-callr (3.7.6-1) ...
530s Setting up r-cran-desc (1.4.3-1) ...
530s Setting up r-cran-fontawesome (0.5.2-1) ...
530s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
530s Setting up r-cran-memoise (2.0.1-1) ...
530s Setting up r-cran-promises (1.3.0+dfsg-1) ...
530s Setting up r-cran-pkgbuild (1.4.4-1) ...
530s Setting up r-cran-pkgload (1.4.0-1) ...
530s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
530s Setting up r-cran-testthat (3.2.1.1-1) ...
530s Setting up r-cran-bslib (0.7.0+dfsg-1) ...
530s Setting up r-cran-shiny (1.9.1+dfsg-1) ...
530s Setting up r-cran-rmarkdown (2.28+dfsg-1) ...
530s Setting up autopkgtest-satdep (0) ...
530s Processing triggers for libc-bin (2.40-1ubuntu3) ...
559s (Reading database ... 78478 files and directories currently installed.)
559s Removing autopkgtest-satdep (0) ...
571s autopkgtest [21:05:23]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
571s autopkgtest [21:05:23]: test pkg-r-autopkgtest: [-----------------------
576s Test: Try to load the R library BiocManager
576s 
576s R version 4.4.2 (2024-10-31) -- "Pile of Leaves"
576s Copyright (C) 2024 The R Foundation for Statistical Computing
576s Platform: arm-unknown-linux-gnueabihf (32-bit)
576s 
576s R is free software and comes with ABSOLUTELY NO WARRANTY.
576s You are welcome to redistribute it under certain conditions.
576s Type 'license()' or 'licence()' for distribution details.
576s 
576s R is a collaborative project with many contributors.
576s Type 'contributors()' for more information and
576s 'citation()' on how to cite R or R packages in publications.
576s 
576s Type 'demo()' for some demos, 'help()' for on-line help, or
576s 'help.start()' for an HTML browser interface to help.
576s Type 'q()' to quit R.
576s 
577s > library('BiocManager')
577s Bioconductor version '3.19' is out-of-date; the current release version '3.20'
577s   is available with R version '4.4'; see https://bioconductor.org/install
577s > 
577s > 
577s Other tests are currently unsupported!
577s They will be progressively added.
577s autopkgtest [21:05:29]: test pkg-r-autopkgtest: -----------------------]
587s autopkgtest [21:05:39]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
587s pkg-r-autopkgtest    PASS
593s autopkgtest [21:05:45]: @@@@@@@@@@@@@@@@@@@@ summary
593s run-unit-test        FAIL badpkg
593s blame: r-cran-biocmanager
593s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.
593s pkg-r-autopkgtest    PASS