0s autopkgtest [05:19:09]: starting date and time: 2024-11-14 05:19:09+0000 0s autopkgtest [05:19:09]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [05:19:09]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.vzojppe9/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade q2-taxa --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- lxd -r lxd-armhf-10.145.243.247 lxd-armhf-10.145.243.247:autopkgtest/ubuntu/plucky/armhf 52s autopkgtest [05:20:01]: testbed dpkg architecture: armhf 54s autopkgtest [05:20:03]: testbed apt version: 2.9.8 54s autopkgtest [05:20:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup 63s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 63s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [98.6 kB] 63s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.4 kB] 63s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [987 kB] 63s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 63s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [103 kB] 63s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [684 kB] 64s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [5040 B] 64s Fetched 1973 kB in 1s (1740 kB/s) 64s Reading package lists... 82s tee: /proc/self/fd/2: Permission denied 106s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 106s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 106s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 106s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 107s Reading package lists... 107s Reading package lists... 108s Building dependency tree... 108s Reading state information... 110s Calculating upgrade... 111s The following NEW packages will be installed: 111s python3.13-gdbm 111s The following packages will be upgraded: 111s libpython3-stdlib python3 python3-gdbm python3-minimal 111s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 111s Need to get 99.6 kB of archives. 111s After this operation, 91.1 kB of additional disk space will be used. 111s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB] 111s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB] 111s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB] 111s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 111s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 112s Fetched 99.6 kB in 0s (283 kB/s) 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59560 files and directories currently installed.) 112s Preparing to unpack .../python3-minimal_3.12.7-1_armhf.deb ... 112s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 112s Setting up python3-minimal (3.12.7-1) ... 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59560 files and directories currently installed.) 112s Preparing to unpack .../python3_3.12.7-1_armhf.deb ... 112s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 113s Preparing to unpack .../libpython3-stdlib_3.12.7-1_armhf.deb ... 113s Unpacking libpython3-stdlib:armhf (3.12.7-1) over (3.12.6-0ubuntu1) ... 113s Selecting previously unselected package python3.13-gdbm. 113s Preparing to unpack .../python3.13-gdbm_3.13.0-2_armhf.deb ... 113s Unpacking python3.13-gdbm (3.13.0-2) ... 113s Preparing to unpack .../python3-gdbm_3.12.7-1_armhf.deb ... 113s Unpacking python3-gdbm:armhf (3.12.7-1) over (3.12.6-1ubuntu1) ... 113s Setting up python3.13-gdbm (3.13.0-2) ... 113s Setting up libpython3-stdlib:armhf (3.12.7-1) ... 113s Setting up python3 (3.12.7-1) ... 113s Setting up python3-gdbm:armhf (3.12.7-1) ... 113s Processing triggers for man-db (2.12.1-3) ... 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s autopkgtest [05:21:06]: rebooting testbed after setup commands that affected boot 186s autopkgtest [05:22:15]: testbed running kernel: Linux 6.8.0-48-generic #48~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Mon Oct 7 11:49:53 UTC 2 215s autopkgtest [05:22:44]: @@@@@@@@@@@@@@@@@@@@ apt-source q2-taxa 225s Get:1 http://ftpmaster.internal/ubuntu plucky/universe q2-taxa 2024.5.0+dfsg-1build1 (dsc) [2380 B] 225s Get:2 http://ftpmaster.internal/ubuntu plucky/universe q2-taxa 2024.5.0+dfsg-1build1 (tar) [234 kB] 225s Get:3 http://ftpmaster.internal/ubuntu plucky/universe q2-taxa 2024.5.0+dfsg-1build1 (diff) [7576 B] 225s gpgv: Signature made Thu Jul 11 06:38:28 2024 UTC 225s gpgv: using RSA key 92978A6E195E4921825F7FF0F34F09744E9F5DD9 225s gpgv: Can't check signature: No public key 225s dpkg-source: warning: cannot verify inline signature for ./q2-taxa_2024.5.0+dfsg-1build1.dsc: no acceptable signature found 226s autopkgtest [05:22:55]: testing package q2-taxa version 2024.5.0+dfsg-1build1 227s autopkgtest [05:22:56]: build not needed 230s autopkgtest [05:22:59]: test run-unit-test: preparing testbed 240s Reading package lists... 241s Building dependency tree... 241s Reading state information... 241s Starting pkgProblemResolver with broken count: 1 241s Starting 2 pkgProblemResolver with broken count: 1 241s Investigating (0) q2-types:armhf < none -> 2024.5.0-1ubuntu2 @un puN Ib > 241s Broken q2-types:armhf Depends on python3-skbio:armhf < none @un H > 241s Broken q2-types:armhf Depends on python3-biom-format:armhf < none | 2.1.16-1 @un uH > 241s Considering python3-biom-format:armhf 1 as a solution to q2-types:armhf 2 241s Re-Instated libaec0:armhf 241s Re-Instated libsz2:armhf 241s Re-Instated libhdf5-103-1t64:armhf 241s Re-Instated libhdf5-hl-100t64:armhf 241s Re-Instated liblzf1:armhf 241s Re-Instated python3-h5py-serial:armhf 241s Re-Instated python3-h5py:armhf 241s Re-Instated liblbfgsb0:armhf 241s Re-Instated python3-scipy:armhf 241s Re-Instated python3-biom-format:armhf 241s Broken q2-types:armhf Depends on python3-ijson:armhf < none | 3.3.0-1 @un uH > 241s Considering python3-ijson:armhf 1 as a solution to q2-types:armhf 2 241s Re-Instated libyajl2:armhf 241s Re-Instated python3-ijson:armhf 241s Broken q2-types:armhf Depends on libopenblas0:armhf < none | 0.3.28+ds-3 @un uH > 241s Considering libopenblas0:armhf 1 as a solution to q2-types:armhf 2 241s Re-Instated libopenblas0-pthread:armhf 241s Re-Instated libopenblas0:armhf 241s Done 241s Some packages could not be installed. This may mean that you have 241s requested an impossible situation or if you are using the unstable 241s distribution that some required packages have not yet been created 241s or been moved out of Incoming. 241s The following information may help to resolve the situation: 241s 241s The following packages have unmet dependencies: 242s q2-types : Depends: python3-skbio but it is not installable 242s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 242s E: Unable to correct problems, you have held broken packages. 249s Reading package lists... 249s Building dependency tree... 250s Reading state information... 250s Starting pkgProblemResolver with broken count: 1 251s Starting 2 pkgProblemResolver with broken count: 1 251s Investigating (0) q2-types:armhf < none -> 2024.5.0-1ubuntu2 @un puN Ib > 251s Broken q2-types:armhf Depends on python3-skbio:armhf < none @un H > 251s Broken q2-types:armhf Depends on python3-biom-format:armhf < none | 2.1.16-1 @un uH > 251s Considering python3-biom-format:armhf 1 as a solution to q2-types:armhf 2 251s Re-Instated libaec0:armhf 251s Re-Instated libsz2:armhf 251s Re-Instated libhdf5-103-1t64:armhf 251s Re-Instated libhdf5-hl-100t64:armhf 251s Re-Instated liblzf1:armhf 251s Re-Instated python3-h5py-serial:armhf 251s Re-Instated python3-h5py:armhf 251s Re-Instated liblbfgsb0:armhf 251s Re-Instated python3-scipy:armhf 251s Re-Instated python3-biom-format:armhf 251s Broken q2-types:armhf Depends on python3-ijson:armhf < none | 3.3.0-1 @un uH > 251s Considering python3-ijson:armhf 1 as a solution to q2-types:armhf 2 251s Re-Instated libyajl2:armhf 251s Re-Instated python3-ijson:armhf 251s Broken q2-types:armhf Depends on libopenblas0:armhf < none | 0.3.28+ds-3 @un uH > 251s Considering libopenblas0:armhf 1 as a solution to q2-types:armhf 2 251s Re-Instated libopenblas0-pthread:armhf 251s Re-Instated libopenblas0:armhf 251s Done 251s Some packages could not be installed. This may mean that you have 251s requested an impossible situation or if you are using the unstable 251s distribution that some required packages have not yet been created 251s or been moved out of Incoming. 251s The following information may help to resolve the situation: 251s 251s The following packages have unmet dependencies: 252s q2-types : Depends: python3-skbio but it is not installable 252s E: Unable to correct problems, you have held broken packages. 252s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 254s Reading package lists... 254s Building dependency tree... 254s Reading state information... 255s Starting pkgProblemResolver with broken count: 1 255s Starting 2 pkgProblemResolver with broken count: 1 255s Investigating (0) q2-types:armhf < none -> 2024.5.0-1ubuntu2 @un puN Ib > 255s Broken q2-types:armhf Depends on python3-skbio:armhf < none @un H > 255s Broken q2-types:armhf Depends on python3-biom-format:armhf < none | 2.1.16-1 @un uH > 255s Considering python3-biom-format:armhf 1 as a solution to q2-types:armhf 2 255s Re-Instated libaec0:armhf 255s Re-Instated libsz2:armhf 255s Re-Instated libhdf5-103-1t64:armhf 255s Re-Instated libhdf5-hl-100t64:armhf 255s Re-Instated liblzf1:armhf 255s Re-Instated python3-h5py-serial:armhf 255s Re-Instated python3-h5py:armhf 255s Re-Instated liblbfgsb0:armhf 255s Re-Instated python3-scipy:armhf 255s Re-Instated python3-biom-format:armhf 255s Broken q2-types:armhf Depends on python3-ijson:armhf < none | 3.3.0-1 @un uH > 255s Considering python3-ijson:armhf 1 as a solution to q2-types:armhf 2 255s Re-Instated libyajl2:armhf 255s Re-Instated python3-ijson:armhf 255s Broken q2-types:armhf Depends on libopenblas0:armhf < none | 0.3.28+ds-3 @un uH > 255s Considering libopenblas0:armhf 1 as a solution to q2-types:armhf 2 255s Re-Instated libopenblas0-pthread:armhf 255s Re-Instated libopenblas0:armhf 255s Done 255s Some packages could not be installed. This may mean that you have 255s requested an impossible situation or if you are using the unstable 255s distribution that some required packages have not yet been created 255s or been moved out of Incoming. 255s The following information may help to resolve the situation: 255s 255s The following packages have unmet dependencies: 256s q2-types : Depends: python3-skbio but it is not installable 256s E: Unable to correct problems, you have held broken packages. 256s run-unit-test SKIP installation fails and skip-not-installable set 256s autopkgtest [05:23:25]: @@@@@@@@@@@@@@@@@@@@ summary 256s run-unit-test SKIP installation fails and skip-not-installable set