0s autopkgtest [05:17:36]: starting date and time: 2024-11-14 05:17:36+0000 0s autopkgtest [05:17:36]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [05:17:36]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.i6x927yt/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade q2-emperor --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- lxd -r lxd-armhf-10.145.243.16 lxd-armhf-10.145.243.16:autopkgtest/ubuntu/plucky/armhf 54s autopkgtest [05:18:30]: testbed dpkg architecture: armhf 56s autopkgtest [05:18:32]: testbed apt version: 2.9.8 56s autopkgtest [05:18:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup 64s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 64s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [987 kB] 64s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 64s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.4 kB] 64s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [98.6 kB] 64s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [103 kB] 64s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [684 kB] 64s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [5040 B] 64s Fetched 1973 kB in 1s (2184 kB/s) 65s Reading package lists... 82s tee: /proc/self/fd/2: Permission denied 108s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 108s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 108s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 108s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 109s Reading package lists... 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 110s Calculating upgrade... 110s The following NEW packages will be installed: 110s python3.13-gdbm 110s The following packages will be upgraded: 110s libpython3-stdlib python3 python3-gdbm python3-minimal 111s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 111s Need to get 99.6 kB of archives. 111s After this operation, 91.1 kB of additional disk space will be used. 111s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB] 111s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB] 111s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB] 111s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 111s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 111s Fetched 99.6 kB in 0s (285 kB/s) 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59560 files and directories currently installed.) 111s Preparing to unpack .../python3-minimal_3.12.7-1_armhf.deb ... 111s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 111s Setting up python3-minimal (3.12.7-1) ... 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59560 files and directories currently installed.) 112s Preparing to unpack .../python3_3.12.7-1_armhf.deb ... 112s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 112s Preparing to unpack .../libpython3-stdlib_3.12.7-1_armhf.deb ... 112s Unpacking libpython3-stdlib:armhf (3.12.7-1) over (3.12.6-0ubuntu1) ... 112s Selecting previously unselected package python3.13-gdbm. 112s Preparing to unpack .../python3.13-gdbm_3.13.0-2_armhf.deb ... 112s Unpacking python3.13-gdbm (3.13.0-2) ... 112s Preparing to unpack .../python3-gdbm_3.12.7-1_armhf.deb ... 112s Unpacking python3-gdbm:armhf (3.12.7-1) over (3.12.6-1ubuntu1) ... 112s Setting up python3.13-gdbm (3.13.0-2) ... 112s Setting up libpython3-stdlib:armhf (3.12.7-1) ... 112s Setting up python3 (3.12.7-1) ... 112s Setting up python3-gdbm:armhf (3.12.7-1) ... 112s Processing triggers for man-db (2.12.1-3) ... 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 114s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s autopkgtest [05:19:32]: rebooting testbed after setup commands that affected boot 185s autopkgtest [05:20:41]: testbed running kernel: Linux 6.8.0-48-generic #48~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Mon Oct 7 11:49:53 UTC 2 213s autopkgtest [05:21:09]: @@@@@@@@@@@@@@@@@@@@ apt-source q2-emperor 223s Get:1 http://ftpmaster.internal/ubuntu plucky/universe q2-emperor 2024.5.0-2 (dsc) [2309 B] 223s Get:2 http://ftpmaster.internal/ubuntu plucky/universe q2-emperor 2024.5.0-2 (tar) [244 kB] 223s Get:3 http://ftpmaster.internal/ubuntu plucky/universe q2-emperor 2024.5.0-2 (diff) [9132 B] 223s gpgv: Signature made Sun Jun 30 07:17:02 2024 UTC 223s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 223s gpgv: Can't check signature: No public key 223s dpkg-source: warning: cannot verify inline signature for ./q2-emperor_2024.5.0-2.dsc: no acceptable signature found 223s autopkgtest [05:21:19]: testing package q2-emperor version 2024.5.0-2 225s autopkgtest [05:21:21]: build not needed 227s autopkgtest [05:21:23]: test run-unit-test: preparing testbed 237s Reading package lists... 237s Building dependency tree... 237s Reading state information... 238s Starting pkgProblemResolver with broken count: 2 238s Starting 2 pkgProblemResolver with broken count: 2 238s Investigating (0) q2-types:armhf < none -> 2024.5.0-1ubuntu2 @un puN Ib > 238s Broken q2-types:armhf Depends on python3-skbio:armhf < none @un H > 238s Broken q2-types:armhf Depends on python3-biom-format:armhf < none | 2.1.16-1 @un uH > 238s Considering python3-biom-format:armhf 1 as a solution to q2-types:armhf 2 238s Re-Instated libaec0:armhf 238s Re-Instated libsz2:armhf 238s Re-Instated libhdf5-103-1t64:armhf 238s Re-Instated libhdf5-hl-100t64:armhf 238s Re-Instated liblzf1:armhf 238s Re-Instated python3-h5py-serial:armhf 238s Re-Instated python3-h5py:armhf 238s Re-Instated liblbfgsb0:armhf 238s Re-Instated python3-scipy:armhf 238s Re-Instated python3-biom-format:armhf 238s Broken q2-types:armhf Depends on python3-ijson:armhf < none | 3.3.0-1 @un uH > 238s Considering python3-ijson:armhf 1 as a solution to q2-types:armhf 2 238s Re-Instated libyajl2:armhf 238s Re-Instated python3-ijson:armhf 238s Broken q2-types:armhf Depends on libopenblas0:armhf < none | 0.3.28+ds-3 @un uH > 238s Considering libopenblas0:armhf 1 as a solution to q2-types:armhf 2 238s Re-Instated libopenblas0-pthread:armhf 238s Re-Instated libopenblas0:armhf 238s Investigating (0) python3-emperor:armhf < none -> 1.0.3+ds-9.1 @un puN Ib > 238s Broken python3-emperor:armhf Depends on python3-skbio:armhf < none @un H > (>= 0.5.8-2exp1~) 238s Broken python3-emperor:armhf Depends on libjs-jquery-ui:armhf < none | 1.13.2+dfsg-1 @un uH > 238s Considering libjs-jquery-ui:armhf 1 as a solution to python3-emperor:armhf 0 238s Re-Instated libjs-jquery-ui:armhf 238s Done 238s Some packages could not be installed. This may mean that you have 238s requested an impossible situation or if you are using the unstable 238s distribution that some required packages have not yet been created 238s or been moved out of Incoming. 238s The following information may help to resolve the situation: 238s 238s The following packages have unmet dependencies: 238s python3-emperor : Depends: python3-skbio (>= 0.5.8-2exp1~) but it is not installable 238s q2-types : Depends: python3-skbio but it is not installable 238s E: Unable to correct problems, you have held broken packages. 238s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 244s Reading package lists... 244s Building dependency tree... 244s Reading state information... 245s Starting pkgProblemResolver with broken count: 2 245s Starting 2 pkgProblemResolver with broken count: 2 245s Investigating (0) q2-types:armhf < none -> 2024.5.0-1ubuntu2 @un puN Ib > 245s Broken q2-types:armhf Depends on python3-skbio:armhf < none @un H > 245s Broken q2-types:armhf Depends on python3-biom-format:armhf < none | 2.1.16-1 @un uH > 245s Considering python3-biom-format:armhf 1 as a solution to q2-types:armhf 2 245s Re-Instated libaec0:armhf 245s Re-Instated libsz2:armhf 245s Re-Instated libhdf5-103-1t64:armhf 245s Re-Instated libhdf5-hl-100t64:armhf 245s Re-Instated liblzf1:armhf 245s Re-Instated python3-h5py-serial:armhf 245s Re-Instated python3-h5py:armhf 245s Re-Instated liblbfgsb0:armhf 245s Re-Instated python3-scipy:armhf 245s Re-Instated python3-biom-format:armhf 245s Broken q2-types:armhf Depends on python3-ijson:armhf < none | 3.3.0-1 @un uH > 245s Considering python3-ijson:armhf 1 as a solution to q2-types:armhf 2 245s Re-Instated libyajl2:armhf 245s Re-Instated python3-ijson:armhf 245s Broken q2-types:armhf Depends on libopenblas0:armhf < none | 0.3.28+ds-3 @un uH > 245s Considering libopenblas0:armhf 1 as a solution to q2-types:armhf 2 245s Re-Instated libopenblas0-pthread:armhf 245s Re-Instated libopenblas0:armhf 245s Investigating (0) python3-emperor:armhf < none -> 1.0.3+ds-9.1 @un puN Ib > 245s Broken python3-emperor:armhf Depends on python3-skbio:armhf < none @un H > (>= 0.5.8-2exp1~) 245s Broken python3-emperor:armhf Depends on libjs-jquery-ui:armhf < none | 1.13.2+dfsg-1 @un uH > 245s Considering libjs-jquery-ui:armhf 1 as a solution to python3-emperor:armhf 0 245s Re-Instated libjs-jquery-ui:armhf 245s Done 245s Some packages could not be installed. This may mean that you have 245s requested an impossible situation or if you are using the unstable 245s distribution that some required packages have not yet been created 245s or been moved out of Incoming. 245s The following information may help to resolve the situation: 245s 245s The following packages have unmet dependencies: 245s python3-emperor : Depends: python3-skbio (>= 0.5.8-2exp1~) but it is not installable 245s q2-types : Depends: python3-skbio but it is not installable 245s E: Unable to correct problems, you have held broken packages. 245s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 247s Reading package lists... 248s Building dependency tree... 248s Reading state information... 248s Starting pkgProblemResolver with broken count: 2 248s Starting 2 pkgProblemResolver with broken count: 2 248s Investigating (0) q2-types:armhf < none -> 2024.5.0-1ubuntu2 @un puN Ib > 248s Broken q2-types:armhf Depends on python3-skbio:armhf < none @un H > 248s Broken q2-types:armhf Depends on python3-biom-format:armhf < none | 2.1.16-1 @un uH > 248s Considering python3-biom-format:armhf 1 as a solution to q2-types:armhf 2 248s Re-Instated libaec0:armhf 248s Re-Instated libsz2:armhf 248s Re-Instated libhdf5-103-1t64:armhf 248s Re-Instated libhdf5-hl-100t64:armhf 248s Re-Instated liblzf1:armhf 248s Re-Instated python3-h5py-serial:armhf 248s Re-Instated python3-h5py:armhf 248s Re-Instated liblbfgsb0:armhf 248s Re-Instated python3-scipy:armhf 248s Re-Instated python3-biom-format:armhf 248s Broken q2-types:armhf Depends on python3-ijson:armhf < none | 3.3.0-1 @un uH > 248s Considering python3-ijson:armhf 1 as a solution to q2-types:armhf 2 248s Re-Instated libyajl2:armhf 248s Re-Instated python3-ijson:armhf 248s Broken q2-types:armhf Depends on libopenblas0:armhf < none | 0.3.28+ds-3 @un uH > 248s Considering libopenblas0:armhf 1 as a solution to q2-types:armhf 2 248s Re-Instated libopenblas0-pthread:armhf 248s Re-Instated libopenblas0:armhf 248s Investigating (0) python3-emperor:armhf < none -> 1.0.3+ds-9.1 @un puN Ib > 248s Broken python3-emperor:armhf Depends on python3-skbio:armhf < none @un H > (>= 0.5.8-2exp1~) 248s Broken python3-emperor:armhf Depends on libjs-jquery-ui:armhf < none | 1.13.2+dfsg-1 @un uH > 248s Considering libjs-jquery-ui:armhf 1 as a solution to python3-emperor:armhf 0 248s Re-Instated libjs-jquery-ui:armhf 248s Done 248s Some packages could not be installed. This may mean that you have 248s requested an impossible situation or if you are using the unstable 248s distribution that some required packages have not yet been created 248s or been moved out of Incoming. 248s The following information may help to resolve the situation: 248s 248s The following packages have unmet dependencies: 249s python3-emperor : Depends: python3-skbio (>= 0.5.8-2exp1~) but it is not installable 249s q2-types : Depends: python3-skbio but it is not installable 249s E: Unable to correct problems, you have held broken packages. 249s run-unit-test SKIP installation fails and skip-not-installable set 249s autopkgtest [05:21:45]: @@@@@@@@@@@@@@@@@@@@ summary 249s run-unit-test SKIP installation fails and skip-not-installable set