0s autopkgtest [21:36:44]: starting date and time: 2024-11-14 21:36:44+0000 0s autopkgtest [21:36:44]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [21:36:44]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.aohaq0i6/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python-biopython --apt-upgrade python-treetime --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python-biopython/1.84+dfsg-4build1 -- lxd -r lxd-armhf-10.145.243.254 lxd-armhf-10.145.243.254:autopkgtest/ubuntu/plucky/armhf 50s autopkgtest [21:37:34]: testbed dpkg architecture: armhf 52s autopkgtest [21:37:36]: testbed apt version: 2.9.8 52s autopkgtest [21:37:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup 60s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 60s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [106 kB] 60s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 60s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1037 kB] 60s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.1 kB] 60s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [115 kB] 60s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [741 kB] 60s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [4136 B] 60s Fetched 2100 kB in 1s (2295 kB/s) 60s Reading package lists... 77s tee: /proc/self/fd/2: Permission denied 99s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 99s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 99s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 99s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 100s Reading package lists... 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 101s Calculating upgrade... 101s The following packages were automatically installed and are no longer required: 101s libperl5.38t64 perl-modules-5.38 python3-netifaces 101s Use 'apt autoremove' to remove them. 101s The following NEW packages will be installed: 101s libperl5.40 perl-modules-5.40 systemd-cryptsetup 101s The following packages will be upgraded: 101s apport apport-core-dump-handler base-files base-passwd bash-completion 101s dhcpcd-base distro-info-data dpkg dpkg-dev fwupd gcc-14-base info 101s install-info iproute2 libarchive13t64 libatomic1 libattr1 101s libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3 101s libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3 101s libblockdev3 libbpf1 libbsd0 libbytesize-common libbytesize1 libcap-ng0 101s libdb5.3t64 libdpkg-perl libdrm-common libdrm2 libdw1t64 libedit2 libelf1t64 101s libevdev2 libfastjson4 libflashrom1 libftdi1-2 libfwupd2 libgcc-s1 101s libgnutls30t64 libgpgme11t64 libinih1 libjson-c5 libjson-glib-1.0-0 101s libjson-glib-1.0-common libkeyutils1 libldap-common libldap2 101s liblocale-gettext-perl libmaxminddb0 libmnl0 libnetfilter-conntrack3 101s libnetplan1 libnewt0.52 libnghttp2-14 libnspr4 libnss-systemd libnvme1t64 101s libpam-systemd libpipeline1 libplymouth5 libpng16-16t64 libpopt0 101s libpython3.12-minimal libpython3.12-stdlib libsgutils2-1.46-2 libssh2-1t64 101s libstdc++6 libsystemd-shared libsystemd0 libtext-charwidth-perl 101s libtext-iconv-perl libtraceevent1 libtraceevent1-plugin libudev1 101s libudisks2-0 liburcu8t64 libutempter0 libuv1t64 libx11-6 libx11-data libxau6 101s libxmlb2 mawk motd-news-config nano netplan-generator netplan.io 101s openssh-client openssh-server openssh-sftp-server pastebinit pci.ids perl 101s perl-base plymouth plymouth-theme-ubuntu-text python3-apport python3-certifi 101s python3-cffi-backend python3-configobj python3-gi python3-idna 101s python3-jaraco.functools python3-json-pointer python3-jsonpatch 101s python3-lazr.restfulclient python3-lazr.uri python3-more-itertools 101s python3-netifaces python3-netplan python3-newt python3-oauthlib 101s python3-problem-report python3-systemd python3-typeguard python3-urllib3 101s python3-wadllib python3-zipp python3.12 python3.12-gdbm python3.12-minimal 101s sg3-utils sg3-utils-udev ssh-import-id systemd systemd-resolved systemd-sysv 101s systemd-timesyncd tzdata udev udisks2 ufw usbutils vim-common vim-tiny 101s whiptail xxd 102s 143 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 102s Need to get 45.5 MB of archives. 102s After this operation, 43.2 MB of additional disk space will be used. 102s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf motd-news-config all 13.5ubuntu3 [5190 B] 102s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf base-files armhf 13.5ubuntu3 [75.1 kB] 102s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg armhf 1.22.11ubuntu3 [1247 kB] 102s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-7 [3214 kB] 102s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-7 [4139 kB] 102s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-7 [263 kB] 102s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-7 [1674 kB] 102s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf liblocale-gettext-perl armhf 1.07-7build1 [15.0 kB] 102s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-iconv-perl armhf 1.7-8build4 [12.8 kB] 102s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-charwidth-perl armhf 0.04-11build4 [9128 B] 102s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [655 kB] 102s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf base-passwd armhf 3.6.5 [53.2 kB] 102s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12 armhf 3.12.7-3 [661 kB] 102s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-minimal armhf 3.12.7-3 [2012 kB] 102s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-stdlib armhf 3.12.7-3 [1934 kB] 102s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-minimal armhf 3.12.7-3 [822 kB] 102s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf tzdata all 2024b-1ubuntu2 [274 kB] 102s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libnss-systemd armhf 256.5-2ubuntu4 [155 kB] 102s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-timesyncd armhf 256.5-2ubuntu4 [40.7 kB] 102s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-resolved armhf 256.5-2ubuntu4 [309 kB] 103s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd-shared armhf 256.5-2ubuntu4 [2129 kB] 103s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd0 armhf 256.5-2ubuntu4 [428 kB] 103s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-sysv armhf 256.5-2ubuntu4 [11.9 kB] 103s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libpam-systemd armhf 256.5-2ubuntu4 [226 kB] 103s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf systemd armhf 256.5-2ubuntu4 [3442 kB] 103s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf udev armhf 256.5-2ubuntu4 [1949 kB] 103s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libudev1 armhf 256.5-2ubuntu4 [188 kB] 103s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf python3-problem-report all 2.30.0-0ubuntu5 [25.0 kB] 103s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf python3-apport all 2.30.0-0ubuntu5 [93.2 kB] 103s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf python3-gi armhf 3.50.0-3 [227 kB] 103s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf apport-core-dump-handler all 2.30.0-0ubuntu5 [17.9 kB] 103s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf apport all 2.30.0-0ubuntu5 [83.0 kB] 103s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libbsd0 armhf 0.12.2-2 [36.8 kB] 103s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libedit2 armhf 3.1-20240808-1 [79.0 kB] 103s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-sftp-server armhf 1:9.7p1-7ubuntu5 [35.4 kB] 103s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-server armhf 1:9.7p1-7ubuntu5 [505 kB] 103s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-client armhf 1:9.7p1-7ubuntu5 [889 kB] 103s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-8ubuntu1 [7846 B] 103s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-8ubuntu1 [51.5 kB] 103s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-8ubuntu1 [711 kB] 103s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-8ubuntu1 [40.8 kB] 103s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libattr1 armhf 1:2.5.2-2 [10.5 kB] 103s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libcap-ng0 armhf 0.8.5-3build1 [13.8 kB] 103s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB] 103s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf install-info armhf 7.1.1-1 [61.4 kB] 103s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf mawk armhf 1.3.4.20240905-1 [116 kB] 103s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf dhcpcd-base armhf 1:10.1.0-2 [188 kB] 103s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf distro-info-data all 0.63 [6588 B] 103s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB] 103s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf libelf1t64 armhf 0.192-4 [50.2 kB] 103s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libbpf1 armhf 1:1.5.0-1 [158 kB] 103s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libmnl0 armhf 1.0.5-3 [10.7 kB] 103s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf iproute2 armhf 6.10.0-2ubuntu1 [1082 kB] 103s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libfastjson4 armhf 1.2304.0-2 [20.2 kB] 103s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-c5 armhf 0.18+ds-1 [33.2 kB] 103s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libkeyutils1 armhf 1.6.3-4ubuntu2 [8712 B] 103s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf netplan-generator armhf 1.1.1-1 [60.4 kB] 103s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cffi-backend armhf 1.17.1-2 [68.7 kB] 103s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf python3-netplan armhf 1.1.1-1 [24.1 kB] 103s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf netplan.io armhf 1.1.1-1 [66.4 kB] 103s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf libnetplan1 armhf 1.1.1-1 [122 kB] 103s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf python3-newt armhf 0.52.24-2ubuntu4 [19.7 kB] 103s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libnewt0.52 armhf 0.52.24-2ubuntu4 [39.2 kB] 103s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf libpopt0 armhf 1.19+dfsg-2 [25.4 kB] 103s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf python3-netifaces armhf 0.11.0-2build4 [17.6 kB] 103s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf vim-tiny armhf 2:9.1.0777-1ubuntu1 [693 kB] 103s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf vim-common all 2:9.1.0777-1ubuntu1 [394 kB] 103s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf whiptail armhf 0.52.24-2ubuntu4 [17.2 kB] 103s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf xxd armhf 2:9.1.0777-1ubuntu1 [66.8 kB] 103s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf bash-completion all 1:2.14.0-2 [210 kB] 103s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf info armhf 7.1.1-1 [126 kB] 103s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm-common all 2.4.123-1 [8436 B] 103s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm2 armhf 2.4.123-1 [36.5 kB] 103s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libevdev2 armhf 1.13.3+dfsg-1 [29.7 kB] 103s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libmaxminddb0 armhf 1.11.0-1 [16.8 kB] 103s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libnetfilter-conntrack3 armhf 1.1.0-1 [38.4 kB] 103s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libnghttp2-14 armhf 1.64.0-1 [68.9 kB] 103s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libpipeline1 armhf 1.5.8-1 [26.9 kB] 103s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libpng16-16t64 armhf 1.6.44-2 [168 kB] 103s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf libplymouth5 armhf 24.004.60-1ubuntu11 [140 kB] 103s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1-plugin armhf 1:1.8.3-1ubuntu1 [18.1 kB] 103s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1 armhf 1:1.8.3-1ubuntu1 [52.1 kB] 103s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf liburcu8t64 armhf 0.14.1-1 [56.6 kB] 103s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf libuv1t64 armhf 1.48.0-7 [83.3 kB] 103s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-data all 2:1.8.10-2 [116 kB] 103s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-6 armhf 2:1.8.10-2 [587 kB] 103s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf libxau6 armhf 1:1.0.11-1 [6558 B] 103s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.2-1 [276 kB] 103s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf pci.ids all 0.0~2024.10.24-1 [279 kB] 103s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu11 [9920 B] 103s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth armhf 24.004.60-1ubuntu11 [142 kB] 103s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-gdbm armhf 3.12.7-3 [28.7 kB] 103s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf ufw all 0.36.2-8 [170 kB] 104s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf usbutils armhf 1:018-1 [76.1 kB] 104s Get:95 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg-dev all 1.22.11ubuntu3 [1088 kB] 104s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf libdpkg-perl all 1.22.11ubuntu3 [279 kB] 104s Get:97 http://ftpmaster.internal/ubuntu plucky/main armhf libarchive13t64 armhf 3.7.4-1.1 [331 kB] 104s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7 [25.7 kB] 104s Get:99 http://ftpmaster.internal/ubuntu plucky/main armhf libflashrom1 armhf 1.4.0-3ubuntu1 [141 kB] 104s Get:100 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 104s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB] 104s Get:102 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd2 armhf 1.9.26-2 [125 kB] 104s Get:103 http://ftpmaster.internal/ubuntu plucky/main armhf libxmlb2 armhf 0.3.21-1 [57.7 kB] 104s Get:104 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 1.9.26-2 [4404 kB] 104s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-utils3 armhf 3.2.1-1 [17.4 kB] 104s Get:106 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-crypto3 armhf 3.2.1-1 [22.4 kB] 104s Get:107 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-fs3 armhf 3.2.1-1 [34.3 kB] 104s Get:108 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-loop3 armhf 3.2.1-1 [6552 B] 104s Get:109 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize1 armhf 2.11-1ubuntu1 [12.0 kB] 104s Get:110 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize-common all 2.11-1ubuntu1 [3584 B] 104s Get:111 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-mdraid3 armhf 3.2.1-1 [13.4 kB] 104s Get:112 http://ftpmaster.internal/ubuntu plucky/main armhf libnvme1t64 armhf 1.11-1 [73.8 kB] 104s Get:113 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-nvme3 armhf 3.2.1-1 [17.6 kB] 104s Get:114 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-part3 armhf 3.2.1-1 [16.5 kB] 105s Get:115 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-swap3 armhf 3.2.1-1 [8952 B] 105s Get:116 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev3 armhf 3.2.1-1 [44.2 kB] 105s Get:117 http://ftpmaster.internal/ubuntu plucky/main armhf libgpgme11t64 armhf 1.23.2-5ubuntu4 [123 kB] 105s Get:118 http://ftpmaster.internal/ubuntu plucky/main armhf libinih1 armhf 58-1ubuntu1 [6750 B] 105s Get:119 http://ftpmaster.internal/ubuntu plucky/main armhf libldap-common all 2.6.8+dfsg-1~exp4ubuntu3 [32.3 kB] 105s Get:120 http://ftpmaster.internal/ubuntu plucky/main armhf libldap2 armhf 2.6.8+dfsg-1~exp4ubuntu3 [173 kB] 105s Get:121 http://ftpmaster.internal/ubuntu plucky/main armhf libnspr4 armhf 2:4.35-1.1ubuntu2 [94.1 kB] 105s Get:122 http://ftpmaster.internal/ubuntu plucky/main armhf libsgutils2-1.46-2 armhf 1.46-3ubuntu5 [82.5 kB] 105s Get:123 http://ftpmaster.internal/ubuntu plucky/main armhf libssh2-1t64 armhf 1.11.1-1 [116 kB] 105s Get:124 http://ftpmaster.internal/ubuntu plucky/main armhf udisks2 armhf 2.10.1-11ubuntu1 [278 kB] 105s Get:125 http://ftpmaster.internal/ubuntu plucky/main armhf libudisks2-0 armhf 2.10.1-11ubuntu1 [142 kB] 105s Get:126 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B] 105s Get:127 http://ftpmaster.internal/ubuntu plucky/main armhf pastebinit all 1.7.1-1 [14.9 kB] 105s Get:128 http://ftpmaster.internal/ubuntu plucky/main armhf python3-certifi all 2024.8.30+dfsg-1 [9742 B] 105s Get:129 http://ftpmaster.internal/ubuntu plucky/main armhf python3-configobj all 5.0.9-1 [33.9 kB] 105s Get:130 http://ftpmaster.internal/ubuntu plucky/main armhf python3-idna all 3.8-2 [47.0 kB] 105s Get:131 http://ftpmaster.internal/ubuntu plucky/main armhf python3-more-itertools all 10.5.0-1 [56.2 kB] 105s Get:132 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jaraco.functools all 4.1.0-1 [11.8 kB] 105s Get:133 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-2 [8396 B] 105s Get:134 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jsonpatch all 1.32-4 [12.2 kB] 105s Get:135 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.uri all 1.0.6-4 [13.6 kB] 105s Get:136 http://ftpmaster.internal/ubuntu plucky/main armhf python3-wadllib all 2.0.0-1 [36.7 kB] 105s Get:137 http://ftpmaster.internal/ubuntu plucky/main armhf python3-oauthlib all 3.2.2-2 [89.8 kB] 105s Get:138 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.restfulclient all 0.14.6-2 [50.9 kB] 105s Get:139 http://ftpmaster.internal/ubuntu plucky/main armhf python3-systemd armhf 235-1build5 [44.0 kB] 105s Get:140 http://ftpmaster.internal/ubuntu plucky/main armhf python3-typeguard all 4.4.1-1 [29.0 kB] 105s Get:141 http://ftpmaster.internal/ubuntu plucky/main armhf python3-urllib3 all 2.0.7-2ubuntu0.1 [93.1 kB] 105s Get:142 http://ftpmaster.internal/ubuntu plucky/main armhf python3-zipp all 3.21.0-1 [10.2 kB] 105s Get:143 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils armhf 1.46-3ubuntu5 [816 kB] 105s Get:144 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils-udev all 1.46-3ubuntu5 [5916 B] 105s Get:145 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-cryptsetup armhf 256.5-2ubuntu4 [122 kB] 105s Get:146 http://ftpmaster.internal/ubuntu plucky/main armhf ssh-import-id all 5.11-0ubuntu3 [10.1 kB] 105s Preconfiguring packages ... 105s Fetched 45.5 MB in 3s (13.5 MB/s) 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 106s Preparing to unpack .../motd-news-config_13.5ubuntu3_all.deb ... 106s Unpacking motd-news-config (13.5ubuntu3) over (13.3ubuntu6) ... 106s Preparing to unpack .../base-files_13.5ubuntu3_armhf.deb ... 106s Unpacking base-files (13.5ubuntu3) over (13.3ubuntu6) ... 106s Setting up base-files (13.5ubuntu3) ... 106s Installing new version of config file /etc/issue ... 106s Installing new version of config file /etc/issue.net ... 106s Installing new version of config file /etc/lsb-release ... 107s motd-news.service is a disabled or a static unit not running, not starting it. 107s (Reading database ... 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... 125s update-initramfs: deferring update (trigger activated) 125s Setting up libperl5.40:armhf (5.40.0-7) ... 125s Setting up perl (5.40.0-7) ... 125s Setting up systemd-cryptsetup (256.5-2ubuntu4) ... 125s Setting up libnvme1t64 (1.11-1) ... 125s Setting up systemd-timesyncd (256.5-2ubuntu4) ... 125s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 125s Setting up udev (256.5-2ubuntu4) ... 126s Setting up libdpkg-perl (1.22.11ubuntu3) ... 126s Setting up libblockdev-nvme3:armhf (3.2.1-1) ... 126s Setting up libdrm2:armhf (2.4.123-1) ... 126s Setting up whiptail (0.52.24-2ubuntu4) ... 126s Setting up libtraceevent1-plugin:armhf (1:1.8.3-1ubuntu1) ... 126s Setting up libplymouth5:armhf (24.004.60-1ubuntu11) ... 126s Setting up python3-netplan (1.1.1-1) ... 126s Setting up netplan-generator (1.1.1-1) ... 126s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 126s Setting up systemd-resolved (256.5-2ubuntu4) ... 127s Setting up openssh-sftp-server (1:9.7p1-7ubuntu5) ... 127s Setting up udisks2 (2.10.1-11ubuntu1) ... 127s vda: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/uevent': Permission denied 127s vda1: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied 127s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied 127s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied 127s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied 127s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied 127s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied 127s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied 127s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied 127s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied 127s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied 127s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied 127s loop8: Failed to write 'change' to '/sys/devices/virtual/block/loop8/uevent': Permission denied 127s Setting up systemd-sysv (256.5-2ubuntu4) ... 127s Setting up openssh-server (1:9.7p1-7ubuntu5) ... 128s Setting up plymouth (24.004.60-1ubuntu11) ... 128s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 128s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 129s Setting up libfwupd2:armhf (1.9.26-2) ... 129s Setting up libnss-systemd:armhf (256.5-2ubuntu4) ... 129s Setting up dpkg-dev (1.22.11ubuntu3) ... 129s Setting up netplan.io (1.1.1-1) ... 129s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu11) ... 129s update-initramfs: deferring update (trigger activated) 129s Setting up libpam-systemd:armhf (256.5-2ubuntu4) ... 129s Setting up fwupd (1.9.26-2) ... 129s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 129s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 129s fwupd.service is a disabled or a static unit not running, not starting it. 129s Setting up apport-core-dump-handler (2.30.0-0ubuntu5) ... 130s Setting up apport (2.30.0-0ubuntu5) ... 130s Installing new version of config file /etc/apport/crashdb.conf ... 131s apport-autoreport.service is a disabled or a static unit not running, not starting it. 131s Processing triggers for dbus (1.14.10-4ubuntu5) ... 131s Processing triggers for shared-mime-info (2.4-5) ... 131s Processing triggers for install-info (7.1.1-1) ... 131s Processing triggers for initramfs-tools (0.142ubuntu34) ... 131s Processing triggers for libc-bin (2.40-1ubuntu3) ... 131s Processing triggers for rsyslog (8.2406.0-1ubuntu2) ... 132s Processing triggers for man-db (2.12.1-3) ... 133s Reading package lists... 134s Building dependency tree... 134s Reading state information... 134s The following packages will be REMOVED: 134s libperl5.38t64* perl-modules-5.38* python3-netifaces* 134s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 134s After this operation, 41.7 MB disk space will be freed. 134s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61506 files and directories currently installed.) 134s Removing libperl5.38t64:armhf (5.38.2-5) ... 134s Removing perl-modules-5.38 (5.38.2-5) ... 135s Removing python3-netifaces:armhf (0.11.0-2build4) ... 135s Processing triggers for man-db (2.12.1-3) ... 135s Processing triggers for libc-bin (2.40-1ubuntu3) ... 137s autopkgtest [21:39:01]: rebooting testbed after setup commands that affected boot 202s autopkgtest [21:40:06]: testbed running kernel: Linux 6.8.0-47-generic #47~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Oct 2 16:39:14 UTC 2 229s autopkgtest [21:40:33]: @@@@@@@@@@@@@@@@@@@@ apt-source python-treetime 240s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-treetime 0.11.4-1 (dsc) [2611 B] 240s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-treetime 0.11.4-1 (tar) [5117 kB] 240s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-treetime 0.11.4-1 (tar) [1291 kB] 240s Get:4 http://ftpmaster.internal/ubuntu plucky/universe python-treetime 0.11.4-1 (diff) [8028 B] 240s gpgv: Signature made Sat Nov 9 21:31:47 2024 UTC 240s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 240s gpgv: issuer "emollier@debian.org" 240s gpgv: Can't check signature: No public key 240s dpkg-source: warning: cannot verify inline signature for ./python-treetime_0.11.4-1.dsc: no acceptable signature found 241s autopkgtest [21:40:45]: testing package python-treetime version 0.11.4-1 242s autopkgtest [21:40:46]: build not needed 248s autopkgtest [21:40:52]: test run-unit-test: preparing testbed 258s Reading package lists... 258s Building dependency tree... 258s Reading state information... 259s Starting pkgProblemResolver with broken count: 0 259s Starting 2 pkgProblemResolver with broken count: 0 259s Done 259s The following additional packages will be installed: 259s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx 259s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 259s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 259s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 259s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 259s libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 259s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 259s libxslt1.1 libxss1 python-matplotlib-data python3-appdirs python3-biopython 259s python3-brotli python3-cairo python3-contourpy python3-cycler 259s python3-dateutil python3-decorator python3-fonttools python3-freetype 259s python3-fs python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 259s python3-mpmath python3-numpy python3-packaging python3-pandas 259s python3-pandas-lib python3-pil python3-pil.imagetk python3-reportlab 259s python3-rlpycairo python3-scipy python3-six python3-sympy python3-tk 259s python3-treetime python3-tz python3-ufolib2 python3-unicodedata2 259s python3.12-tk sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common 259s xfonts-encodings xfonts-utils xml-core 259s Suggested packages: 259s blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 259s libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 bwa clustalo clustalw 259s dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons 259s python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools 259s t-coffee wise python-cycler-doc python-lxml-doc cm-super-minimal dvipng 259s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 259s librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi-cairo 259s python3-gobject python3-pyqt5 python3-sip python3-tornado 259s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc 259s gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc 259s python3-statsmodels python-pil-doc pdf-viewer python3-egenix-mxtexttools 259s python-reportlab-doc rl-accel rl-renderpm python-scipy-doc 259s texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.13-tk 259s sgml-base-doc debhelper 259s Recommended packages: 259s javascript-common python-biopython-doc ncbi-blast+ python3-bs4 259s python3-cssselect python3-html5lib python3-bottleneck python3-numexpr 259s python3-odf python3-openpyxl python3-tables python3-olefile 259s fonts-dejavu-extra g++ | c++-compiler isympy-common 259s The following NEW packages will be installed: 259s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 259s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 259s libfontenc1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 259s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 259s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 259s libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 259s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 259s libxslt1.1 libxss1 python-matplotlib-data python3-appdirs python3-biopython 259s python3-brotli python3-cairo python3-contourpy python3-cycler 259s python3-dateutil python3-decorator python3-fonttools python3-freetype 259s python3-fs python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 259s python3-mpmath python3-numpy python3-packaging python3-pandas 259s python3-pandas-lib python3-pil python3-pil.imagetk python3-reportlab 259s python3-rlpycairo python3-scipy python3-six python3-sympy python3-tk 259s python3-treetime python3-tz python3-ufolib2 python3-unicodedata2 259s python3.12-tk sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common 259s xfonts-encodings xfonts-utils xml-core 260s 0 upgraded, 86 newly installed, 0 to remove and 0 not upgraded. 260s Need to get 79.2 MB/79.2 MB of archives. 260s After this operation, 291 MB of additional disk space will be used. 260s Get:1 /tmp/autopkgtest.lJjZxr/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [720 B] 260s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf sgml-base all 1.31 [11.4 kB] 260s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libtcl8.6 armhf 8.6.15+dfsg-2 [909 kB] 260s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 260s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 260s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 260s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libfontenc1 armhf 1:1.1.8-1build1 [11.5 kB] 260s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 260s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 260s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf xfonts-utils armhf 1:7.7+7 [90.6 kB] 260s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-urw-base35 all 20200910-8 [11.0 MB] 260s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB] 260s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB] 260s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 260s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 260s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 260s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libtk8.6 armhf 8.6.15-1 [685 kB] 261s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-7build1 [525 kB] 261s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf blt armhf 2.5.3+dfsg-7build1 [4840 B] 261s Get:20 http://ftpmaster.internal/ubuntu plucky/universe armhf fonts-lyx all 2.4.2.1-1 [171 kB] 261s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 261s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 261s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 261s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 261s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB] 261s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.22-1 [38.9 kB] 261s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 261s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB] 261s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 261s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.0.1-1 [463 kB] 261s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 261s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu2 [125 kB] 261s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 261s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 261s Get:35 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 261s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 261s Get:37 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 261s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 261s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu2 [151 kB] 261s Get:40 http://ftpmaster.internal/ubuntu plucky/universe armhf libqhull-r8.0 armhf 2020.2-6build1 [173 kB] 261s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libraqm0 armhf 0.10.1-1build1 [12.4 kB] 261s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB] 261s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 261s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB] 261s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 261s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpdemux2 armhf 1.4.0-0.1 [11.8 kB] 261s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpmux3 armhf 1.4.0-0.1 [22.5 kB] 261s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf libxslt1.1 armhf 1.1.39-0exp1ubuntu1 [150 kB] 261s Get:49 http://ftpmaster.internal/ubuntu plucky/universe armhf python-matplotlib-data all 3.8.3-3 [2928 kB] 261s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf python3-appdirs all 1.4.4-4 [10.9 kB] 261s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 261s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-tk armhf 3.12.7-3 [112 kB] 261s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tk armhf 3.12.6-1ubuntu1 [9806 B] 261s Get:54 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pil.imagetk armhf 10.4.0-1ubuntu1 [8848 B] 261s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf libopenjp2-7 armhf 2.5.0-2ubuntu1 [170 kB] 261s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf python3-pil armhf 10.4.0-1ubuntu1 [428 kB] 261s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cairo armhf 1.26.1-2 [114 kB] 261s Get:58 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-freetype all 2.5.1-1 [92.3 kB] 261s Get:59 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-rlpycairo all 0.3.0-3 [9130 B] 261s Get:60 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-reportlab all 4.2.5-1 [1107 kB] 261s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf xml-core all 0.19 [20.3 kB] 261s Get:62 http://ftpmaster.internal/ubuntu plucky/universe armhf w3c-sgml-lib all 1.3-3 [280 kB] 261s Get:63 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-biopython armhf 1.84+dfsg-4build1 [1672 kB] 261s Get:64 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-brotli armhf 1.1.0-2build2 [321 kB] 261s Get:65 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-contourpy armhf 1.3.0-2 [192 kB] 261s Get:66 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-cycler all 0.12.1-1 [9716 B] 261s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf python3-six all 1.16.0-7 [13.1 kB] 261s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf python3-dateutil all 2.9.0-2 [80.3 kB] 261s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 261s Get:70 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.13.1-5 [16.4 MB] 262s Get:71 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 262s Get:72 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-mpmath all 1.3.0-1 [425 kB] 262s Get:73 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sympy all 1.13.3-1 [4228 kB] 262s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tz all 2024.1-2 [31.4 kB] 262s Get:75 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fs all 2.4.16-4 [91.3 kB] 262s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lxml armhf 5.3.0-1 [1234 kB] 262s Get:77 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-lz4 armhf 4.0.2+dfsg-1build4 [24.8 kB] 262s Get:78 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-unicodedata2 armhf 15.1.0+ds-1build2 [357 kB] 262s Get:79 http://ftpmaster.internal/ubuntu plucky/universe armhf unicode-data all 15.1.0-1 [8878 kB] 262s Get:80 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fonttools armhf 4.46.0-1build2 [1402 kB] 263s Get:81 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-kiwisolver armhf 1.4.7-2build1 [71.1 kB] 263s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.1-1 [41.4 kB] 263s Get:83 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-matplotlib armhf 3.8.3-3 [4500 kB] 263s Get:84 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas-lib armhf 2.2.3+dfsg-5 [4728 kB] 263s Get:85 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas all 2.2.3+dfsg-5 [3112 kB] 263s Get:86 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-treetime all 0.11.4-1 [941 kB] 264s Fetched 79.2 MB in 3s (23.0 MB/s) 264s Selecting previously unselected package sgml-base. 264s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59565 files and directories currently installed.) 264s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 264s Unpacking sgml-base (1.31) ... 264s Selecting previously unselected package libtcl8.6:armhf. 264s Preparing to unpack .../01-libtcl8.6_8.6.15+dfsg-2_armhf.deb ... 264s Unpacking libtcl8.6:armhf (8.6.15+dfsg-2) ... 264s Selecting previously unselected package libfreetype6:armhf. 264s Preparing to unpack .../02-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 264s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 264s Selecting previously unselected package fonts-dejavu-mono. 264s Preparing to unpack .../03-fonts-dejavu-mono_2.37-8_all.deb ... 264s Unpacking fonts-dejavu-mono (2.37-8) ... 264s Selecting previously unselected package fonts-dejavu-core. 264s Preparing to unpack .../04-fonts-dejavu-core_2.37-8_all.deb ... 264s Unpacking fonts-dejavu-core (2.37-8) ... 264s Selecting previously unselected package libfontenc1:armhf. 264s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build1_armhf.deb ... 264s Unpacking libfontenc1:armhf (1:1.1.8-1build1) ... 264s Selecting previously unselected package x11-common. 264s Preparing to unpack .../06-x11-common_1%3a7.7+23ubuntu3_all.deb ... 264s Unpacking x11-common (1:7.7+23ubuntu3) ... 264s Selecting previously unselected package xfonts-encodings. 264s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 264s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 264s Selecting previously unselected package xfonts-utils. 264s Preparing to unpack .../08-xfonts-utils_1%3a7.7+7_armhf.deb ... 264s Unpacking xfonts-utils (1:7.7+7) ... 264s Selecting previously unselected package fonts-urw-base35. 264s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ... 264s Unpacking fonts-urw-base35 (20200910-8) ... 264s Selecting previously unselected package fontconfig-config. 264s Preparing to unpack .../10-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ... 264s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 264s Selecting previously unselected package libfontconfig1:armhf. 264s Preparing to unpack .../11-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ... 264s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 264s Selecting previously unselected package libxrender1:armhf. 264s Preparing to unpack .../12-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 264s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 265s Selecting previously unselected package libxft2:armhf. 265s Preparing to unpack .../13-libxft2_2.3.6-1build1_armhf.deb ... 265s Unpacking libxft2:armhf (2.3.6-1build1) ... 265s Selecting previously unselected package libxss1:armhf. 265s Preparing to unpack .../14-libxss1_1%3a1.2.3-1build3_armhf.deb ... 265s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 265s Selecting previously unselected package libtk8.6:armhf. 265s Preparing to unpack .../15-libtk8.6_8.6.15-1_armhf.deb ... 265s Unpacking libtk8.6:armhf (8.6.15-1) ... 265s Selecting previously unselected package tk8.6-blt2.5. 265s Preparing to unpack .../16-tk8.6-blt2.5_2.5.3+dfsg-7build1_armhf.deb ... 265s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 265s Selecting previously unselected package blt. 265s Preparing to unpack .../17-blt_2.5.3+dfsg-7build1_armhf.deb ... 265s Unpacking blt (2.5.3+dfsg-7build1) ... 265s Selecting previously unselected package fonts-lyx. 265s Preparing to unpack .../18-fonts-lyx_2.4.2.1-1_all.deb ... 265s Unpacking fonts-lyx (2.4.2.1-1) ... 265s Selecting previously unselected package libblas3:armhf. 265s Preparing to unpack .../19-libblas3_3.12.0-3build2_armhf.deb ... 265s Unpacking libblas3:armhf (3.12.0-3build2) ... 265s Selecting previously unselected package libpixman-1-0:armhf. 265s Preparing to unpack .../20-libpixman-1-0_0.44.0-3_armhf.deb ... 265s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 265s Selecting previously unselected package libxcb-render0:armhf. 265s Preparing to unpack .../21-libxcb-render0_1.17.0-2_armhf.deb ... 265s Unpacking libxcb-render0:armhf (1.17.0-2) ... 265s Selecting previously unselected package libxcb-shm0:armhf. 265s Preparing to unpack .../22-libxcb-shm0_1.17.0-2_armhf.deb ... 265s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 265s Selecting previously unselected package libcairo2:armhf. 265s Preparing to unpack .../23-libcairo2_1.18.2-2_armhf.deb ... 265s Unpacking libcairo2:armhf (1.18.2-2) ... 265s Selecting previously unselected package libdeflate0:armhf. 265s Preparing to unpack .../24-libdeflate0_1.22-1_armhf.deb ... 265s Unpacking libdeflate0:armhf (1.22-1) ... 265s Selecting previously unselected package libgfortran5:armhf. 265s Preparing to unpack .../25-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 265s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 265s Selecting previously unselected package libgomp1:armhf. 265s Preparing to unpack .../26-libgomp1_14.2.0-8ubuntu1_armhf.deb ... 265s Unpacking libgomp1:armhf (14.2.0-8ubuntu1) ... 265s Selecting previously unselected package libgraphite2-3:armhf. 265s Preparing to unpack .../27-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 265s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 265s Selecting previously unselected package libharfbuzz0b:armhf. 265s Preparing to unpack .../28-libharfbuzz0b_10.0.1-1_armhf.deb ... 265s Unpacking libharfbuzz0b:armhf (10.0.1-1) ... 265s Selecting previously unselected package libimagequant0:armhf. 265s Preparing to unpack .../29-libimagequant0_2.18.0-1build1_armhf.deb ... 265s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 265s Selecting previously unselected package libjpeg-turbo8:armhf. 265s Preparing to unpack .../30-libjpeg-turbo8_2.1.5-2ubuntu2_armhf.deb ... 265s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 265s Selecting previously unselected package libjpeg8:armhf. 265s Preparing to unpack .../31-libjpeg8_8c-2ubuntu11_armhf.deb ... 265s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 265s Selecting previously unselected package libjs-jquery. 265s Preparing to unpack .../32-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 265s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 265s Selecting previously unselected package libjs-jquery-ui. 265s Preparing to unpack .../33-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 265s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 265s Selecting previously unselected package liblapack3:armhf. 265s Preparing to unpack .../34-liblapack3_3.12.0-3build2_armhf.deb ... 265s Unpacking liblapack3:armhf (3.12.0-3build2) ... 265s Selecting previously unselected package liblbfgsb0:armhf. 265s Preparing to unpack .../35-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 265s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 265s Selecting previously unselected package liblcms2-2:armhf. 265s Preparing to unpack .../36-liblcms2-2_2.16-2_armhf.deb ... 265s Unpacking liblcms2-2:armhf (2.16-2) ... 265s Selecting previously unselected package liblerc4:armhf. 265s Preparing to unpack .../37-liblerc4_4.0.0+ds-4ubuntu2_armhf.deb ... 265s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 265s Selecting previously unselected package libqhull-r8.0:armhf. 265s Preparing to unpack .../38-libqhull-r8.0_2020.2-6build1_armhf.deb ... 265s Unpacking libqhull-r8.0:armhf (2020.2-6build1) ... 265s Selecting previously unselected package libraqm0:armhf. 265s Preparing to unpack .../39-libraqm0_0.10.1-1build1_armhf.deb ... 265s Unpacking libraqm0:armhf (0.10.1-1build1) ... 265s Selecting previously unselected package libsharpyuv0:armhf. 265s Preparing to unpack .../40-libsharpyuv0_1.4.0-0.1_armhf.deb ... 265s Unpacking libsharpyuv0:armhf (1.4.0-0.1) ... 266s Selecting previously unselected package libjbig0:armhf. 266s Preparing to unpack .../41-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 266s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 266s Selecting previously unselected package libwebp7:armhf. 266s Preparing to unpack .../42-libwebp7_1.4.0-0.1_armhf.deb ... 266s Unpacking libwebp7:armhf (1.4.0-0.1) ... 266s Selecting previously unselected package libtiff6:armhf. 266s Preparing to unpack .../43-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 266s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 266s Selecting previously unselected package libwebpdemux2:armhf. 266s Preparing to unpack .../44-libwebpdemux2_1.4.0-0.1_armhf.deb ... 266s Unpacking libwebpdemux2:armhf (1.4.0-0.1) ... 266s Selecting previously unselected package libwebpmux3:armhf. 266s Preparing to unpack .../45-libwebpmux3_1.4.0-0.1_armhf.deb ... 266s Unpacking libwebpmux3:armhf (1.4.0-0.1) ... 266s Selecting previously unselected package libxslt1.1:armhf. 266s Preparing to unpack .../46-libxslt1.1_1.1.39-0exp1ubuntu1_armhf.deb ... 266s Unpacking libxslt1.1:armhf (1.1.39-0exp1ubuntu1) ... 266s Selecting previously unselected package python-matplotlib-data. 266s Preparing to unpack .../47-python-matplotlib-data_3.8.3-3_all.deb ... 266s Unpacking python-matplotlib-data (3.8.3-3) ... 266s Selecting previously unselected package python3-appdirs. 266s Preparing to unpack .../48-python3-appdirs_1.4.4-4_all.deb ... 266s Unpacking python3-appdirs (1.4.4-4) ... 266s Selecting previously unselected package python3-numpy. 266s Preparing to unpack .../49-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 266s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 266s Selecting previously unselected package python3.12-tk. 266s Preparing to unpack .../50-python3.12-tk_3.12.7-3_armhf.deb ... 266s Unpacking python3.12-tk (3.12.7-3) ... 266s Selecting previously unselected package python3-tk:armhf. 266s Preparing to unpack .../51-python3-tk_3.12.6-1ubuntu1_armhf.deb ... 266s Unpacking python3-tk:armhf (3.12.6-1ubuntu1) ... 266s Selecting previously unselected package python3-pil.imagetk:armhf. 266s Preparing to unpack .../52-python3-pil.imagetk_10.4.0-1ubuntu1_armhf.deb ... 266s Unpacking python3-pil.imagetk:armhf (10.4.0-1ubuntu1) ... 266s Selecting previously unselected package libopenjp2-7:armhf. 266s Preparing to unpack .../53-libopenjp2-7_2.5.0-2ubuntu1_armhf.deb ... 266s Unpacking libopenjp2-7:armhf (2.5.0-2ubuntu1) ... 266s Selecting previously unselected package python3-pil:armhf. 266s Preparing to unpack .../54-python3-pil_10.4.0-1ubuntu1_armhf.deb ... 266s Unpacking python3-pil:armhf (10.4.0-1ubuntu1) ... 266s Selecting previously unselected package python3-cairo. 266s Preparing to unpack .../55-python3-cairo_1.26.1-2_armhf.deb ... 266s Unpacking python3-cairo (1.26.1-2) ... 266s Selecting previously unselected package python3-freetype. 266s Preparing to unpack .../56-python3-freetype_2.5.1-1_all.deb ... 266s Unpacking python3-freetype (2.5.1-1) ... 266s Selecting previously unselected package python3-rlpycairo. 266s Preparing to unpack .../57-python3-rlpycairo_0.3.0-3_all.deb ... 266s Unpacking python3-rlpycairo (0.3.0-3) ... 266s Selecting previously unselected package python3-reportlab. 266s Preparing to unpack .../58-python3-reportlab_4.2.5-1_all.deb ... 266s Unpacking python3-reportlab (4.2.5-1) ... 266s Selecting previously unselected package xml-core. 266s Preparing to unpack .../59-xml-core_0.19_all.deb ... 266s Unpacking xml-core (0.19) ... 266s Selecting previously unselected package w3c-sgml-lib. 266s Preparing to unpack .../60-w3c-sgml-lib_1.3-3_all.deb ... 267s Unpacking w3c-sgml-lib (1.3-3) ... 267s Selecting previously unselected package python3-biopython. 267s Preparing to unpack .../61-python3-biopython_1.84+dfsg-4build1_armhf.deb ... 267s Unpacking python3-biopython (1.84+dfsg-4build1) ... 267s Selecting previously unselected package python3-brotli. 267s Preparing to unpack .../62-python3-brotli_1.1.0-2build2_armhf.deb ... 267s Unpacking python3-brotli (1.1.0-2build2) ... 267s Selecting previously unselected package python3-contourpy. 267s Preparing to unpack .../63-python3-contourpy_1.3.0-2_armhf.deb ... 267s Unpacking python3-contourpy (1.3.0-2) ... 267s Selecting previously unselected package python3-cycler. 267s Preparing to unpack .../64-python3-cycler_0.12.1-1_all.deb ... 267s Unpacking python3-cycler (0.12.1-1) ... 267s Selecting previously unselected package python3-six. 267s Preparing to unpack .../65-python3-six_1.16.0-7_all.deb ... 267s Unpacking python3-six (1.16.0-7) ... 267s Selecting previously unselected package python3-dateutil. 267s Preparing to unpack .../66-python3-dateutil_2.9.0-2_all.deb ... 267s Unpacking python3-dateutil (2.9.0-2) ... 267s Selecting previously unselected package python3-decorator. 267s Preparing to unpack .../67-python3-decorator_5.1.1-5_all.deb ... 267s Unpacking python3-decorator (5.1.1-5) ... 267s Selecting previously unselected package python3-scipy. 267s Preparing to unpack .../68-python3-scipy_1.13.1-5_armhf.deb ... 267s Unpacking python3-scipy (1.13.1-5) ... 267s Selecting previously unselected package python3-ufolib2. 267s Preparing to unpack .../69-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 267s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 267s Selecting previously unselected package python3-mpmath. 267s Preparing to unpack .../70-python3-mpmath_1.3.0-1_all.deb ... 267s Unpacking python3-mpmath (1.3.0-1) ... 268s Selecting previously unselected package python3-sympy. 268s Preparing to unpack .../71-python3-sympy_1.13.3-1_all.deb ... 268s Unpacking python3-sympy (1.13.3-1) ... 268s Selecting previously unselected package python3-tz. 268s Preparing to unpack .../72-python3-tz_2024.1-2_all.deb ... 268s Unpacking python3-tz (2024.1-2) ... 268s Selecting previously unselected package python3-fs. 268s Preparing to unpack .../73-python3-fs_2.4.16-4_all.deb ... 268s Unpacking python3-fs (2.4.16-4) ... 268s Selecting previously unselected package python3-lxml:armhf. 268s Preparing to unpack .../74-python3-lxml_5.3.0-1_armhf.deb ... 268s Unpacking python3-lxml:armhf (5.3.0-1) ... 268s Selecting previously unselected package python3-lz4. 268s Preparing to unpack .../75-python3-lz4_4.0.2+dfsg-1build4_armhf.deb ... 268s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 268s Selecting previously unselected package python3-unicodedata2. 268s Preparing to unpack .../76-python3-unicodedata2_15.1.0+ds-1build2_armhf.deb ... 268s Unpacking python3-unicodedata2 (15.1.0+ds-1build2) ... 268s Selecting previously unselected package unicode-data. 268s Preparing to unpack .../77-unicode-data_15.1.0-1_all.deb ... 268s Unpacking unicode-data (15.1.0-1) ... 268s Selecting previously unselected package python3-fonttools. 268s Preparing to unpack .../78-python3-fonttools_4.46.0-1build2_armhf.deb ... 268s Unpacking python3-fonttools (4.46.0-1build2) ... 269s Selecting previously unselected package python3-kiwisolver. 269s Preparing to unpack .../79-python3-kiwisolver_1.4.7-2build1_armhf.deb ... 269s Unpacking python3-kiwisolver (1.4.7-2build1) ... 269s Selecting previously unselected package python3-packaging. 269s Preparing to unpack .../80-python3-packaging_24.1-1_all.deb ... 269s Unpacking python3-packaging (24.1-1) ... 269s Selecting previously unselected package python3-matplotlib. 269s Preparing to unpack .../81-python3-matplotlib_3.8.3-3_armhf.deb ... 269s Unpacking python3-matplotlib (3.8.3-3) ... 269s Selecting previously unselected package python3-pandas-lib:armhf. 269s Preparing to unpack .../82-python3-pandas-lib_2.2.3+dfsg-5_armhf.deb ... 269s Unpacking python3-pandas-lib:armhf (2.2.3+dfsg-5) ... 269s Selecting previously unselected package python3-pandas. 269s Preparing to unpack .../83-python3-pandas_2.2.3+dfsg-5_all.deb ... 269s Unpacking python3-pandas (2.2.3+dfsg-5) ... 269s Selecting previously unselected package python3-treetime. 269s Preparing to unpack .../84-python3-treetime_0.11.4-1_all.deb ... 269s Unpacking python3-treetime (0.11.4-1) ... 269s Selecting previously unselected package autopkgtest-satdep. 269s Preparing to unpack .../85-1-autopkgtest-satdep.deb ... 269s Unpacking autopkgtest-satdep (0) ... 269s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 269s Setting up liblcms2-2:armhf (2.16-2) ... 269s Setting up libpixman-1-0:armhf (0.44.0-3) ... 269s Setting up libsharpyuv0:armhf (1.4.0-0.1) ... 269s Setting up liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 269s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 269s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 270s Setting up libxcb-render0:armhf (1.17.0-2) ... 270s Setting up python3-unicodedata2 (15.1.0+ds-1build2) ... 270s Setting up fonts-lyx (2.4.2.1-1) ... 270s Setting up x11-common (1:7.7+23ubuntu3) ... 270s Setting up libdeflate0:armhf (1.22-1) ... 270s Setting up libqhull-r8.0:armhf (2020.2-6build1) ... 270s Setting up libxcb-shm0:armhf (1.17.0-2) ... 270s Setting up libgomp1:armhf (14.2.0-8ubuntu1) ... 270s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 270s Setting up python3-tz (2024.1-2) ... 270s Setting up unicode-data (15.1.0-1) ... 270s Setting up python3-six (1.16.0-7) ... 270s Setting up python3-decorator (5.1.1-5) ... 270s Setting up libfontenc1:armhf (1:1.1.8-1build1) ... 270s Setting up libblas3:armhf (3.12.0-3build2) ... 270s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 270s Setting up python3-packaging (24.1-1) ... 270s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 270s Setting up python3-brotli (1.1.0-2build2) ... 270s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 270s Setting up python3-cycler (0.12.1-1) ... 271s Setting up libimagequant0:armhf (2.18.0-1build1) ... 271s Setting up fonts-dejavu-mono (2.37-8) ... 271s Setting up python3-kiwisolver (1.4.7-2build1) ... 271s Setting up libtcl8.6:armhf (8.6.15+dfsg-2) ... 271s Setting up fonts-dejavu-core (2.37-8) ... 271s Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 271s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 271s Setting up libwebp7:armhf (1.4.0-0.1) ... 271s Setting up libxslt1.1:armhf (1.1.39-0exp1ubuntu1) ... 271s Setting up libopenjp2-7:armhf (2.5.0-2ubuntu1) ... 271s Setting up libharfbuzz0b:armhf (10.0.1-1) ... 271s Setting up python3-dateutil (2.9.0-2) ... 271s Setting up sgml-base (1.31) ... 271s Setting up libxss1:armhf (1:1.2.3-1build3) ... 271s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 271s Setting up python3-mpmath (1.3.0-1) ... 271s Setting up python-matplotlib-data (3.8.3-3) ... 271s Setting up libwebpmux3:armhf (1.4.0-0.1) ... 271s Setting up python3-appdirs (1.4.4-4) ... 271s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 271s Setting up python3-sympy (1.13.3-1) ... 278s Setting up liblapack3:armhf (3.12.0-3build2) ... 278s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 278s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 279s Setting up libwebpdemux2:armhf (1.4.0-0.1) ... 279s Setting up python3-freetype (2.5.1-1) ... 279s Setting up xfonts-utils (1:7.7+7) ... 279s Setting up python3-fs (2.4.16-4) ... 279s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 279s Setting up libraqm0:armhf (0.10.1-1build1) ... 279s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 281s Setting up python3-lxml:armhf (5.3.0-1) ... 281s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 281s Setting up xml-core (0.19) ... 281s Setting up python3-contourpy (1.3.0-2) ... 281s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 281s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 281s Setting up libxft2:armhf (2.3.6-1build1) ... 281s Setting up python3-scipy (1.13.1-5) ... 285s Setting up libtk8.6:armhf (8.6.15-1) ... 285s Setting up python3-pandas-lib:armhf (2.2.3+dfsg-5) ... 285s Setting up python3.12-tk (3.12.7-3) ... 285s Setting up fonts-urw-base35 (20200910-8) ... 285s Setting up libcairo2:armhf (1.18.2-2) ... 285s Setting up python3-pil:armhf (10.4.0-1ubuntu1) ... 286s Setting up python3-pandas (2.2.3+dfsg-5) ... 291s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 291s Setting up python3-cairo (1.26.1-2) ... 291s Setting up blt (2.5.3+dfsg-7build1) ... 291s Setting up python3-tk:armhf (3.12.6-1ubuntu1) ... 291s Setting up python3-pil.imagetk:armhf (10.4.0-1ubuntu1) ... 291s Setting up python3-rlpycairo (0.3.0-3) ... 291s Setting up python3-reportlab (4.2.5-1) ... 292s Setting up python3-fonttools (4.46.0-1build2) ... 293s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 293s Setting up python3-matplotlib (3.8.3-3) ... 295s Processing triggers for libc-bin (2.40-1ubuntu3) ... 295s Processing triggers for man-db (2.12.1-3) ... 295s Processing triggers for sgml-base (1.31) ... 295s Setting up w3c-sgml-lib (1.3-3) ... 322s Setting up python3-biopython (1.84+dfsg-4build1) ... 323s Setting up python3-treetime (0.11.4-1) ... 324s Setting up autopkgtest-satdep (0) ... 341s (Reading database ... 70318 files and directories currently installed.) 341s Removing autopkgtest-satdep (0) ... 347s autopkgtest [21:42:31]: test run-unit-test: [----------------------- 350s 350s 0.00 -TreeAnc: set-up 350s read alignment from file h3n2_na/h3n2_na_20.fasta with 19 sequences of length 1407 350s read tree from file h3n2_na/h3n2_na_20.nwk with 19 leaves 350s 350s inferring ancestral sequences... 350s ...done. 350s 350s The TOTAL tree length is 1.311e-01 and 183 mutations were observed. 350s Of these 183 mutations, 350s - 148 occur 1 times 350s - 16 occur 2 times 350s - 1 occur 3 times 350s 350s Of the 1407 positions in the genome, 350s - 1237 were hit 0 times (expected 1235.40) 350s - 124 were hit 1 times (expected 160.68) 350s - 25 were hit 2 times (expected 10.45) 350s - 3 were hit 3 times (expected 0.45) 350s 350s log-likelihood difference to Poisson distribution with same mean: -1.226e+01 350s 350s 350s The ten most homoplasic mutations are: 350s mut multiplicity 350s G27A 3 350s A88G 2 350s A267G 2 350s G451R 2 350s G629A 2 350s C763T 2 350s G780A 2 350s C825T 2 350s C891A 2 350s C906T 2 350s homoplasy_scanning ok 351s 351s 0.00 -TreeAnc: set-up 351s 351s Inferred sequence evolution model (saved as 2024-11-14_ancestral/sequence_evolution_model.txt): 351s Substitution rate (mu): 1.0 351s 351s Equilibrium frequencies (pi_i): 351s A: 0.3062 351s C: 0.1925 351s G: 0.2336 351s T: 0.2577 351s -: 0.01 351s 351s Symmetrized rates from j->i (W_ij): 351s A C G T - 351s A 0 0.8311 2.7926 0.4496 1.0287 351s C 0.8311 0 0.577 2.8797 1.0535 351s G 2.7926 0.577 0 0.612 1.0437 351s T 0.4496 2.8797 0.612 0 1.0394 351s - 1.0287 1.0535 1.0437 1.0394 0 351s 351s Actual rates from j->i (Q_ij): 351s A C G T - 351s A 0 0.2545 0.8551 0.1377 0.315 351s C 0.16 0 0.1111 0.5543 0.2028 351s G 0.6523 0.1348 0 0.143 0.2438 351s T 0.1159 0.7421 0.1577 0 0.2678 351s - 0.0103 0.0106 0.0105 0.0104 0 351s 351s 351s --- alignment including ancestral nodes saved as 351s 2024-11-14_ancestral/ancestral_sequences.fasta 351s 351s --- tree saved in nexus format as 351s 2024-11-14_ancestral/annotated_tree.nexus 351s 351s --- tree saved in auspice json format as 351s 2024-11-14_ancestral/auspice_tree.json 351s 351s ancestral_reconstruction ok 353s 353s 0.00 -TreeAnc: set-up 353s 353s Attempting to parse dates... 353s Using column 'name' as name. This needs match the taxon names in the tree!! 353s Using column 'date' as date. 353s 353s 0.00 TreeTime.reroot: with method or node: least-squares 353s 353s 0.00 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 353s 353s 0.03 TreeTime.reroot: with method or node: least-squares 353s 353s 0.03 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 353s 353s 0.05 TreeTime.reroot: with method or node: least-squares 353s 353s 0.05 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 353s 353s Root-Tip-Regression: 353s --rate: 2.826e-03 353s --r^2: 0.98 353s 353s The R^2 value indicates the fraction of variation inroot-to-tip 353s distance explained by the sampling times.Higher values corresponds 353s more clock-like behavior (max 1.0). 353s 353s The rate is the slope of the best fit of the date tothe root-to-tip 353s distance and provides an estimate ofthe substitution rate. The rate 353s needs to be positive!Negative rates suggest an inappropriate root. 353s 353s 353s The estimated rate and tree correspond to a root date: 353s 353s --- root-date: 1996.75 353s 353s 353s --- new tree written to 353s 2024-11-14_clock/rerooted.newick 353s 353s --- wrote dates and root-to-tip distances to 353s 2024-11-14_clock/rtt.csv 353s 353s --- root-to-tip plot saved to 353s 2024-11-14_clock/root_to_tip_regression.pdf 353s temporal_signal ok 359s 359s Attempting to parse dates... 359s Using column 'name' as name. This needs match the taxon names in the tree!! 359s Using column 'date' as date. 359s 359s 0.00 -TreeAnc: set-up 359s 359s 0.11 TreeTime.reroot: with method or node: least-squares 359s 359s 0.11 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 359s 359s 0.13 TreeTime.reroot: with method or node: least-squares 359s 359s 0.13 TreeTime.reroot: rerooting will account for covariance and shared ancestry. 359s 359s 0.20 ###TreeTime.run: INITIAL ROUND 359s 359s 0.81 TreeTime.reroot: with method or node: least-squares 359s 359s 0.81 TreeTime.reroot: rerooting will account for covariance and shared ancestry. 359s 359s 0.83 ###TreeTime.run: rerunning timetree after rerooting 359s 359s 1.47 ###TreeTime.run: ITERATION 1 out of 2 iterations 359s 359s 1.47 DEPRECATION WARNING. TreeTime.resolve_polytomies: You are resolving 359s polytomies using the old 'greedy' mode. This is not well suited for large 359s polytomies. Stochastic resolution will become the default in future 359s versions. To switch now, rerun with the flag `--stochastic-resolve`. To 359s keep using the greedy method in the future, run with `--greedy-resolve` 359s 359s 2.12 ###TreeTime.run: CONVERGED 359s 359s 3.92 ###TreeTime.run: FINAL ROUND - confidence estimation via marginal 359s reconstruction 359s 359s Inferred sequence evolution model (saved as 2024-11-14_treetime/sequence_evolution_model.txt): 359s Substitution rate (mu): 1.0 359s 359s Equilibrium frequencies (pi_i): 359s A: 0.3088 359s C: 0.1897 359s G: 0.2335 359s T: 0.2581 359s -: 0.0099 359s 359s Symmetrized rates from j->i (W_ij): 359s A C G T - 359s A 0 0.7003 3.0669 0.2651 0.9742 359s C 0.7003 0 0.3354 3.399 0.999 359s G 3.0669 0.3354 0 0.4258 0.9892 359s T 0.2651 3.399 0.4258 0 0.9848 359s - 0.9742 0.999 0.9892 0.9848 0 359s 359s Actual rates from j->i (Q_ij): 359s A C G T - 359s A 0 0.2163 0.9472 0.0819 0.3009 359s C 0.1328 0 0.0636 0.6448 0.1895 359s G 0.716 0.0783 0 0.0994 0.2309 359s T 0.0684 0.8772 0.1099 0 0.2541 359s - 0.0097 0.0099 0.0098 0.0098 0 359s 359s 359s Inferred sequence evolution model (saved as 2024-11-14_treetime/molecular_clock.txt): 359s Root-Tip-Regression: 359s --rate: 2.677e-03 +/- 3.98e-04 (one std-dev) 359s --chi^2: 8.72 359s --r^2: 0.98 359s 359s --- saved tree as 359s 2024-11-14_treetime/timetree.pdf 359s 359s --- root-to-tip plot saved to 359s 2024-11-14_treetime/root_to_tip_regression.pdf 359s 359s --- alignment including ancestral nodes saved as 359s 2024-11-14_treetime/ancestral_sequences.fasta 359s 359s --- saved divergence times in 359s 2024-11-14_treetime/dates.tsv 359s 359s --- tree saved in nexus format as 359s 2024-11-14_treetime/timetree.nexus 359s 359s --- tree saved in auspice json format as 359s 2024-11-14_treetime/auspice_tree.json 359s 359s --- divergence tree saved in nexus format as 359s 2024-11-14_treetime/divergence_tree.nexus 359s 359s timetree_inference ok 360s /usr/lib/python3/dist-packages/treetime/wrappers.py:587: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 360s weight_dict = {row[0]:row[1] for ri,row in tmp_weights.iterrows() if not np.isnan(row[1])} 361s Using column '#name' as taxon name. This needs to match the taxa in the tree! 361s Assigned discrete traits to 86 out of 86 taxa. 361s 361s 361s Completed mugration model inference of attribute 'country' for zika/zika.nwk 361s 361s Saved inferred mugration model as: 2024-11-14_mugration/GTR.txt 361s Saved annotated tree as: 2024-11-14_mugration/annotated_tree.nexus 361s ---Done! 361s 361s mugration ok 413s 413s Attempting to parse dates... 413s Using column 'strain' as name. This needs match the taxon names in the tree!! 413s Using column 'date' as date. 413s 413s 0.00 -TreeAnc: set-up 413s 413s 6.74 TreeTime.reroot: with method or node: least-squares 413s 413s 6.74 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 413s 413s 6.93 TreeTime.reroot: with method or node: least-squares 413s 413s 6.93 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 413s 413s 8.15 ###TreeTime.run: INITIAL ROUND 413s 413s 15.59 TreeTime.reroot: with method or node: least-squares 413s 413s 15.59 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 413s 413s 15.76 ###TreeTime.run: rerunning timetree after rerooting 413s 413s 23.76 ###TreeTime.run: ITERATION 1 out of 2 iterations 413s 413s 23.76 DEPRECATION WARNING. TreeTime.resolve_polytomies: You are resolving 413s polytomies using the old 'greedy' mode. This is not well suited for large 413s polytomies. Stochastic resolution will become the default in future 413s versions. To switch now, rerun with the flag `--stochastic-resolve`. To 413s keep using the greedy method in the future, run with `--greedy-resolve` 413s 413s 34.82 ###TreeTime.run: ITERATION 2 out of 2 iterations 413s 413s 45.12 TreeTime: the following tips have been marked as outliers. Their date 413s constraints were not used. Please remove them from the tree. Their dates 413s have been reset: 413s 413s 45.12 G22619, input date: [2011.0013698630137, 2011.9986301369863], apparent 413s date: 1985.53 413s 413s 45.12 G22703, input date: [2004.0013661202186, 2004.9986338797814], apparent 413s date: 2012.13 413s 413s Inferred sequence evolution model (saved as 2024-11-14-0001_treetime/sequence_evolution_model.txt): 413s Substitution rate (mu): 1.0 413s 413s Equilibrium frequencies (pi_i): 413s A: 0.1669 413s C: 0.3286 413s G: 0.3273 413s T: 0.1669 413s -: 0.0103 413s 413s Symmetrized rates from j->i (W_ij): 413s A C G T - 413s A 0 0.7597 1.6596 0.3122 36.0125 413s C 0.7597 0 0.3145 1.4124 35.772 413s G 1.6596 0.3145 0 0.7358 49.296 413s T 0.3122 1.4124 0.7358 0 32.0978 413s - 36.0125 35.772 49.296 32.0978 0 413s 413s Actual rates from j->i (Q_ij): 413s A C G T - 413s A 0 0.1268 0.277 0.0521 6.0109 413s C 0.2496 0 0.1033 0.4641 11.7539 413s G 0.5432 0.1029 0 0.2408 16.1357 413s T 0.0521 0.2357 0.1228 0 5.3565 413s - 0.3713 0.3688 0.5082 0.3309 0 413s 413s 413s Inferred sequence evolution model (saved as 2024-11-14-0001_treetime/molecular_clock.txt): 413s Root-Tip-Regression: 413s --rate: 1.000e-07 413s --r^2: 0.45 413s 413s --- saved tree as 413s 2024-11-14-0001_treetime/timetree.pdf 413s 413s --- root-to-tip plot saved to 413s 2024-11-14-0001_treetime/root_to_tip_regression.pdf 413s Sites that were constant except for ambiguous bases were made constant 413s by TreeTime. This happened 1343 times. These sites are now excluded 413s from the VCF. 413s 413s ***WARNING: vcf_utils.py 413s 52 sites were found that had no alternative bases. If this data has 413s been run through TreeTime and contains ambiguous bases, try calling 413s get_tree_dict with var_ambigs=True to see if this clears the error. 413s Alternative causes: - Not all sequences in your alignment are in the 413s tree (if you are running TreeTime via commandline this is most likely) 413s - In TreeTime, can be caused by overwriting variants in tips with 413s small branch lengths (debug) These are the positions affected 413s (numbering starts at 0): 413s 46593, 52473, 165918, 304891, 662240, 954864, 954865, 954866, 954867, 413s 963561, 1046706, 1145470, 1321893, 1468105, 1468106, 1512661, 1704463, 413s 1716723, 1743968, 1951837, 2129868, 2215816, 2274543, 2515984, 413s 2580886, 2626512, 2626513, 2626599, 2686156, 2736331, 2823901, 413s 2869282, 2894207, 2911378, 3047997, 3160385, 3314001, 3321447, 413s 3336505, 3461793, 3490408, 3618189, 3734466, 3764813, 3828626, 413s 3842630, 3894439, 3912292, 3913650, 3956227, 4149358, 4183687 413s 413s --- alignment including ancestral nodes saved as 413s 2024-11-14-0001_treetime/ancestral_sequences.vcf 413s 413s --- saved divergence times in 413s 2024-11-14-0001_treetime/dates.tsv 413s 413s --- tree saved in nexus format as 413s 2024-11-14-0001_treetime/timetree.nexus 413s 413s --- tree saved in auspice json format as 413s 2024-11-14-0001_treetime/auspice_tree.json 413s 413s --- divergence tree saved in nexus format as 413s 2024-11-14-0001_treetime/divergence_tree.nexus 413s 413s --- saved detected outliers as 2024-11-14-0001_treetime/outliers.tsv 413s timetree_inference on vcf data ok 541s 541s Attempting to parse dates... 541s Using column 'name' as name. This needs match the taxon names in the tree!! 541s Using column 'date' as date. 541s 541s 0.00 -TreeAnc: set-up 541s 541s 4.40 -WARNING: character U is unknown. Treating it as missing information 541s 541s 18.25 TreeTime.reroot: with method or node: least-squares 541s 541s 18.25 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 541s 541s 18.75 TreeTime.reroot: with method or node: least-squares 541s 541s 18.75 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 541s 541s 27.48 ###TreeTime.run: INITIAL ROUND 541s 541s 38.03 TreeTime.reroot: with method or node: least-squares 541s 541s 38.03 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 541s 541s 38.45 ###TreeTime.run: rerunning timetree after rerooting 541s 541s 53.24 ###TreeTime.run: ITERATION 1 out of 2 iterations 541s 541s 53.97 DEPRECATION WARNING. TreeTime.resolve_polytomies: You are resolving 541s polytomies using the old 'greedy' mode. This is not well suited for large 541s polytomies. Stochastic resolution will become the default in future 541s versions. To switch now, rerun with the flag `--stochastic-resolve`. To 541s keep using the greedy method in the future, run with `--greedy-resolve` 541s 541s 77.63 ###TreeTime.run: ITERATION 2 out of 2 iterations 541s 541s 120.35 TreeTime: the following tips have been marked as outliers. Their date 541s constraints were not used. Please remove them from the tree. Their dates 541s have been reset: 541s 541s 120.35 NZG_0393, input date: 2016.24, apparent date: 2015.16 541s 541s 120.35 NZG_0422, input date: 2016.25, apparent date: 2015.16 541s 541s 120.35 NZG_0358, input date: 2016.22, apparent date: 2015.16 541s 541s 120.35 NZG_0381, input date: 2016.23, apparent date: 2015.11 541s 541s 120.35 EM_NG_2016_029417, input date: 2016.22, apparent date: 2015.11 541s 541s 120.35 EM_NG_2016_029364, input date: 2016.21, apparent date: 2015.11 541s 541s 120.35 EM_NG_2016_029366, input date: 2016.21, apparent date: 2015.11 541s 541s 120.35 2607_C2_12916_EMLH, input date: 2015.32, apparent date: 2015.47 541s 541s 120.35 2607_C2_12855_EMLH, input date: 2015.28, apparent date: 2015.47 541s 541s 120.35 1708_C1_13031_EMLH, input date: 2015.38, apparent date: 2015.57 541s 541s 120.35 1507_C1_18650_EMLH, input date: 2015.52, apparent date: 2015.85 541s 541s 120.35 1507_C1_18706_EMLH, input date: 2015.53, apparent date: 2015.85 541s 541s 120.35 0208_C1_MK10173, input date: 2015.58, apparent date: 2015.85 541s 541s 120.35 2208_C2_18659R_EMLH, input date: 2015.52, apparent date: 2015.99 541s 541s 120.35 1507_C1_13268_EMLH, input date: 2015.47, apparent date: 2015.92 541s 541s 120.35 1507_C1_18660_EMLH, input date: 2015.52, apparent date: 2015.92 541s 541s 120.35 1507_C1_18647_EMLH, input date: 2015.52, apparent date: 2015.79 541s 541s 120.35 2208_C2_18642R_EMLH, input date: 2015.51, apparent date: 2015.92 541s 541s 120.35 1507_C1_18636_EMLH, input date: 2015.51, apparent date: 2015.99 541s 541s 120.35 2208_C2_18687R_EMLH, input date: 2015.53, apparent date: 2015.99 541s 541s Inferred sequence evolution model (saved as 2024-11-14-0002_treetime/sequence_evolution_model.txt): 541s Substitution rate (mu): 1.0 541s 541s Equilibrium frequencies (pi_i): 541s A: 0.3139 541s C: 0.2144 541s G: 0.1978 541s T: 0.2638 541s -: 0.01 541s 541s Symmetrized rates from j->i (W_ij): 541s A C G T - 541s A 0 0.3826 2.5277 0.2294 6.7951 541s C 0.3826 0 0.1691 3.5602 12.1804 541s G 2.5277 0.1691 0 0.3724 5.2953 541s T 0.2294 3.5602 0.3724 0 27.743 541s - 6.7951 12.1804 5.2953 27.743 0 541s 541s Actual rates from j->i (Q_ij): 541s A C G T - 541s A 0 0.1201 0.7935 0.072 2.1332 541s C 0.082 0 0.0363 0.7635 2.612 541s G 0.5001 0.0335 0 0.0737 1.0476 541s T 0.0605 0.9393 0.0983 0 7.3197 541s - 0.0676 0.1212 0.0527 0.2761 0 541s 541s 541s Inferred sequence evolution model (saved as 2024-11-14-0002_treetime/molecular_clock.txt): 541s Root-Tip-Regression: 541s --rate: 7.885e-04 541s --r^2: 0.80 541s 541s Inferred coalescent model 541s Skyline assuming 100.0 gen/year and approximate confidence bounds (+/- 2.000000 standard deviations of the LH) 541s date N_e lower upper 541s 2014.123 2.630e+01 1.139e+01 6.071e+01 541s 2014.211 6.592e+01 4.396e+01 9.883e+01 541s 2014.300 1.023e+02 6.064e+01 1.726e+02 541s 2014.389 1.058e+02 7.172e+01 1.560e+02 541s 2014.478 3.545e+02 2.460e+02 5.109e+02 541s 2014.567 4.731e+02 3.176e+02 7.046e+02 541s 2014.655 8.809e+02 5.966e+02 1.301e+03 541s 2014.744 2.331e+03 1.480e+03 3.670e+03 541s 2014.833 1.285e+03 7.531e+02 2.191e+03 541s 2014.922 9.481e+02 5.739e+02 1.566e+03 541s 2015.011 5.818e+02 3.580e+02 9.455e+02 541s 2015.099 5.733e+02 3.629e+02 9.057e+02 541s 2015.188 4.325e+02 2.719e+02 6.882e+02 541s 2015.277 3.054e+02 1.867e+02 4.997e+02 541s 2015.366 2.713e+02 1.722e+02 4.275e+02 541s 2015.455 1.626e+02 1.003e+02 2.637e+02 541s 2015.544 1.250e+02 7.185e+01 2.174e+02 541s 2015.632 1.459e+02 8.692e+01 2.450e+02 541s 2015.721 7.747e+01 4.090e+01 1.468e+02 541s 2015.810 2.319e+01 8.708e+00 6.174e+01 541s 541s --- written skyline to 2024-11-14-0002_treetime/skyline.tsv 541s 541s --- saved tree as 541s 2024-11-14-0002_treetime/timetree.pdf 541s 541s --- root-to-tip plot saved to 541s 2024-11-14-0002_treetime/root_to_tip_regression.pdf 541s 541s --- alignment including ancestral nodes saved as 541s 2024-11-14-0002_treetime/ancestral_sequences.fasta 541s 541s --- saved divergence times in 541s 2024-11-14-0002_treetime/dates.tsv 541s 541s --- tree saved in nexus format as 541s 2024-11-14-0002_treetime/timetree.nexus 541s 541s --- tree saved in auspice json format as 541s 2024-11-14-0002_treetime/auspice_tree.json 541s 541s --- divergence tree saved in nexus format as 541s 2024-11-14-0002_treetime/divergence_tree.nexus 541s 541s --- saved detected outliers as 2024-11-14-0002_treetime/outliers.tsv 541s skyline approximation ok 571s 571s Attempting to parse dates... 571s Using column 'name' as name. This needs match the taxon names in the tree!! 571s Using column 'date' as date. 571s 571s 0.00 -TreeAnc: set-up 571s 571s 0.06 TreeTime.reroot: with method or node: least-squares 571s 571s 0.06 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 571s 571s 0.64 TreeTime.reroot: with method or node: least-squares 571s 571s 0.65 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 571s 571s 1.08 ###TreeTime.run: INITIAL ROUND 571s 571s 9.84 TreeTime.reroot: with method or node: least-squares 571s 571s 9.84 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 571s 571s 10.27 ###TreeTime.run: rerunning timetree after rerooting 571s 571s 18.88 ###TreeTime.run: ITERATION 1 out of 2 iterations 571s 571s 18.88 DEPRECATION WARNING. TreeTime.resolve_polytomies: You are resolving 571s polytomies using the old 'greedy' mode. This is not well suited for large 571s polytomies. Stochastic resolution will become the default in future 571s versions. To switch now, rerun with the flag `--stochastic-resolve`. To 571s keep using the greedy method in the future, run with `--greedy-resolve` 571s 571s 27.54 ###TreeTime.run: CONVERGED 571s 571s 27.54 TreeTime: the following tips have been marked as outliers. Their date 571s constraints were not used. Please remove them from the tree. Their dates 571s have been reset: 571s 571s 27.54 NZG_0393, input date: 2016.24, apparent date: 2015.26 571s 571s 27.54 NZG_0422, input date: 2016.25, apparent date: 2015.26 571s 571s 27.54 NZG_0358, input date: 2016.22, apparent date: 2015.26 571s 571s 27.54 EM_NG_2016_029366, input date: 2016.21, apparent date: 2015.19 571s 571s 27.54 EM_NG_2016_029364, input date: 2016.21, apparent date: 2015.19 571s 571s 27.54 EM_NG_2016_029417, input date: 2016.22, apparent date: 2015.19 571s 571s 27.54 NZG_0381, input date: 2016.23, apparent date: 2015.19 571s 571s 27.54 1708_C1_13031_EMLH, input date: 2015.38, apparent date: 2015.40 571s 571s 27.54 1507_C1_18660_EMLH, input date: 2015.52, apparent date: 2015.81 571s 571s 27.54 2208_C2_18642R_EMLH, input date: 2015.51, apparent date: 2015.81 571s 571s 27.54 1507_C1_18636_EMLH, input date: 2015.51, apparent date: 2015.87 571s 571s 27.54 2208_C2_18687R_EMLH, input date: 2015.53, apparent date: 2015.87 571s 571s 27.54 1507_C1_18650_EMLH, input date: 2015.52, apparent date: 2015.74 571s 571s 27.54 1507_C1_13268_EMLH, input date: 2015.47, apparent date: 2015.81 571s 571s 27.54 1507_C1_18647_EMLH, input date: 2015.52, apparent date: 2015.68 571s 571s 27.54 0208_C1_MK10173, input date: 2015.58, apparent date: 2015.74 571s 571s 27.54 1507_C1_18706_EMLH, input date: 2015.53, apparent date: 2015.74 571s 571s 27.54 2208_C2_18659R_EMLH, input date: 2015.52, apparent date: 2015.87 571s 571s Inferred sequence evolution model (saved as 2024-11-14-0003_treetime/sequence_evolution_model.txt): 571s Substitution rate (mu): 1.0 571s 571s Equilibrium frequencies (pi_i): 571s A: 0.2 571s C: 0.2 571s G: 0.2 571s T: 0.2 571s -: 0.2 571s 571s Symmetrized rates from j->i (W_ij): 571s A C G T - 571s A 0 1.25 1.25 1.25 1.25 571s C 1.25 0 1.25 1.25 1.25 571s G 1.25 1.25 0 1.25 1.25 571s T 1.25 1.25 1.25 0 1.25 571s - 1.25 1.25 1.25 1.25 0 571s 571s Actual rates from j->i (Q_ij): 571s A C G T - 571s A 0 0.25 0.25 0.25 0.25 571s C 0.25 0 0.25 0.25 0.25 571s G 0.25 0.25 0 0.25 0.25 571s T 0.25 0.25 0.25 0 0.25 571s - 0.25 0.25 0.25 0.25 0 571s 571s 571s Inferred sequence evolution model (saved as 2024-11-14-0003_treetime/molecular_clock.txt): 571s Root-Tip-Regression: 571s --rate: 8.047e-04 571s --r^2: 0.79 571s 571s --- saved tree as 571s 2024-11-14-0003_treetime/timetree.pdf 571s 571s --- root-to-tip plot saved to 571s 2024-11-14-0003_treetime/root_to_tip_regression.pdf 571s --- saved divergence times in 571s 2024-11-14-0003_treetime/dates.tsv 571s 571s --- tree saved in nexus format as 571s 2024-11-14-0003_treetime/timetree.nexus 571s 571s --- tree saved in auspice json format as 571s 2024-11-14-0003_treetime/auspice_tree.json 571s 571s --- divergence tree saved in nexus format as 571s 2024-11-14-0003_treetime/divergence_tree.nexus 571s 571s --- saved detected outliers as 2024-11-14-0003_treetime/outliers.tsv 572s sequence length only ok 572s All tests passed 572s autopkgtest [21:46:16]: test run-unit-test: -----------------------] 576s run-unit-test PASS 576s autopkgtest [21:46:20]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 580s autopkgtest [21:46:24]: test autodep8-python3: preparing testbed 634s autopkgtest [21:47:18]: testbed dpkg architecture: armhf 636s autopkgtest [21:47:20]: testbed apt version: 2.9.8 636s autopkgtest [21:47:20]: @@@@@@@@@@@@@@@@@@@@ test bed setup 644s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 644s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 644s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1037 kB] 645s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [106 kB] 645s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.1 kB] 645s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [115 kB] 645s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [741 kB] 645s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [4136 B] 645s Fetched 2100 kB in 1s (2213 kB/s) 645s Reading package lists... 660s tee: /proc/self/fd/2: Permission denied 681s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 681s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 681s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 681s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 682s Reading package lists... 682s Reading package lists... 683s Building dependency tree... 683s Reading state information... 683s Calculating upgrade... 683s The following packages were automatically installed and are no longer required: 683s libperl5.38t64 perl-modules-5.38 python3-netifaces 683s Use 'apt autoremove' to remove them. 684s The following NEW packages will be installed: 684s libperl5.40 perl-modules-5.40 systemd-cryptsetup 684s The following packages will be upgraded: 684s apport apport-core-dump-handler base-files base-passwd bash-completion 684s dhcpcd-base distro-info-data dpkg dpkg-dev fwupd gcc-14-base info 684s install-info iproute2 libarchive13t64 libatomic1 libattr1 684s libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3 684s libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3 684s libblockdev3 libbpf1 libbsd0 libbytesize-common libbytesize1 libcap-ng0 684s libdb5.3t64 libdpkg-perl libdrm-common libdrm2 libdw1t64 libedit2 libelf1t64 684s libevdev2 libfastjson4 libflashrom1 libftdi1-2 libfwupd2 libgcc-s1 684s libgnutls30t64 libgpgme11t64 libinih1 libjson-c5 libjson-glib-1.0-0 684s libjson-glib-1.0-common libkeyutils1 libldap-common libldap2 684s liblocale-gettext-perl libmaxminddb0 libmnl0 libnetfilter-conntrack3 684s libnetplan1 libnewt0.52 libnghttp2-14 libnspr4 libnss-systemd libnvme1t64 684s libpam-systemd libpipeline1 libplymouth5 libpng16-16t64 libpopt0 684s libpython3.12-minimal libpython3.12-stdlib libsgutils2-1.46-2 libssh2-1t64 684s libstdc++6 libsystemd-shared libsystemd0 libtext-charwidth-perl 684s libtext-iconv-perl libtraceevent1 libtraceevent1-plugin libudev1 684s libudisks2-0 liburcu8t64 libutempter0 libuv1t64 libx11-6 libx11-data libxau6 684s libxmlb2 mawk motd-news-config nano netplan-generator netplan.io 684s openssh-client openssh-server openssh-sftp-server pastebinit pci.ids perl 684s perl-base plymouth plymouth-theme-ubuntu-text python3-apport python3-certifi 684s python3-cffi-backend python3-configobj python3-gi python3-idna 684s python3-jaraco.functools python3-json-pointer python3-jsonpatch 684s python3-lazr.restfulclient python3-lazr.uri python3-more-itertools 684s python3-netifaces python3-netplan python3-newt python3-oauthlib 684s python3-problem-report python3-systemd python3-typeguard python3-urllib3 684s python3-wadllib python3-zipp python3.12 python3.12-gdbm python3.12-minimal 684s sg3-utils sg3-utils-udev ssh-import-id systemd systemd-resolved systemd-sysv 684s systemd-timesyncd tzdata udev udisks2 ufw usbutils vim-common vim-tiny 684s whiptail xxd 684s 143 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 684s Need to get 45.5 MB of archives. 684s After this operation, 43.2 MB of additional disk space will be used. 684s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf motd-news-config all 13.5ubuntu3 [5190 B] 684s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf base-files armhf 13.5ubuntu3 [75.1 kB] 684s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg armhf 1.22.11ubuntu3 [1247 kB] 684s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-7 [3214 kB] 684s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-7 [4139 kB] 684s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-7 [263 kB] 684s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-7 [1674 kB] 685s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf liblocale-gettext-perl armhf 1.07-7build1 [15.0 kB] 685s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-iconv-perl armhf 1.7-8build4 [12.8 kB] 685s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-charwidth-perl armhf 0.04-11build4 [9128 B] 685s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [655 kB] 685s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf base-passwd armhf 3.6.5 [53.2 kB] 685s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12 armhf 3.12.7-3 [661 kB] 685s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-minimal armhf 3.12.7-3 [2012 kB] 685s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-stdlib armhf 3.12.7-3 [1934 kB] 685s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-minimal armhf 3.12.7-3 [822 kB] 685s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf tzdata all 2024b-1ubuntu2 [274 kB] 685s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libnss-systemd armhf 256.5-2ubuntu4 [155 kB] 685s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-timesyncd armhf 256.5-2ubuntu4 [40.7 kB] 685s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-resolved armhf 256.5-2ubuntu4 [309 kB] 685s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd-shared armhf 256.5-2ubuntu4 [2129 kB] 685s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd0 armhf 256.5-2ubuntu4 [428 kB] 685s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-sysv armhf 256.5-2ubuntu4 [11.9 kB] 685s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libpam-systemd armhf 256.5-2ubuntu4 [226 kB] 685s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf systemd armhf 256.5-2ubuntu4 [3442 kB] 685s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf udev armhf 256.5-2ubuntu4 [1949 kB] 685s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libudev1 armhf 256.5-2ubuntu4 [188 kB] 685s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf python3-problem-report all 2.30.0-0ubuntu5 [25.0 kB] 685s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf python3-apport all 2.30.0-0ubuntu5 [93.2 kB] 685s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf python3-gi armhf 3.50.0-3 [227 kB] 685s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf apport-core-dump-handler all 2.30.0-0ubuntu5 [17.9 kB] 685s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf apport all 2.30.0-0ubuntu5 [83.0 kB] 685s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libbsd0 armhf 0.12.2-2 [36.8 kB] 685s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libedit2 armhf 3.1-20240808-1 [79.0 kB] 685s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-sftp-server armhf 1:9.7p1-7ubuntu5 [35.4 kB] 685s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-server armhf 1:9.7p1-7ubuntu5 [505 kB] 685s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-client armhf 1:9.7p1-7ubuntu5 [889 kB] 685s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-8ubuntu1 [7846 B] 685s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-8ubuntu1 [51.5 kB] 685s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-8ubuntu1 [711 kB] 685s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-8ubuntu1 [40.8 kB] 685s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libattr1 armhf 1:2.5.2-2 [10.5 kB] 685s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libcap-ng0 armhf 0.8.5-3build1 [13.8 kB] 685s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB] 685s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf install-info armhf 7.1.1-1 [61.4 kB] 685s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf mawk armhf 1.3.4.20240905-1 [116 kB] 685s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf dhcpcd-base armhf 1:10.1.0-2 [188 kB] 685s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf distro-info-data all 0.63 [6588 B] 685s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB] 685s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf libelf1t64 armhf 0.192-4 [50.2 kB] 685s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libbpf1 armhf 1:1.5.0-1 [158 kB] 685s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libmnl0 armhf 1.0.5-3 [10.7 kB] 685s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf iproute2 armhf 6.10.0-2ubuntu1 [1082 kB] 685s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libfastjson4 armhf 1.2304.0-2 [20.2 kB] 685s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-c5 armhf 0.18+ds-1 [33.2 kB] 685s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libkeyutils1 armhf 1.6.3-4ubuntu2 [8712 B] 685s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf netplan-generator armhf 1.1.1-1 [60.4 kB] 685s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cffi-backend armhf 1.17.1-2 [68.7 kB] 685s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf python3-netplan armhf 1.1.1-1 [24.1 kB] 685s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf netplan.io armhf 1.1.1-1 [66.4 kB] 685s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf libnetplan1 armhf 1.1.1-1 [122 kB] 685s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf python3-newt armhf 0.52.24-2ubuntu4 [19.7 kB] 685s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libnewt0.52 armhf 0.52.24-2ubuntu4 [39.2 kB] 685s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf libpopt0 armhf 1.19+dfsg-2 [25.4 kB] 685s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf python3-netifaces armhf 0.11.0-2build4 [17.6 kB] 685s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf vim-tiny armhf 2:9.1.0777-1ubuntu1 [693 kB] 685s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf vim-common all 2:9.1.0777-1ubuntu1 [394 kB] 685s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf whiptail armhf 0.52.24-2ubuntu4 [17.2 kB] 685s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf xxd armhf 2:9.1.0777-1ubuntu1 [66.8 kB] 685s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf bash-completion all 1:2.14.0-2 [210 kB] 685s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf info armhf 7.1.1-1 [126 kB] 685s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm-common all 2.4.123-1 [8436 B] 685s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm2 armhf 2.4.123-1 [36.5 kB] 685s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libevdev2 armhf 1.13.3+dfsg-1 [29.7 kB] 685s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libmaxminddb0 armhf 1.11.0-1 [16.8 kB] 685s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libnetfilter-conntrack3 armhf 1.1.0-1 [38.4 kB] 685s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libnghttp2-14 armhf 1.64.0-1 [68.9 kB] 685s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libpipeline1 armhf 1.5.8-1 [26.9 kB] 685s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libpng16-16t64 armhf 1.6.44-2 [168 kB] 686s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf libplymouth5 armhf 24.004.60-1ubuntu11 [140 kB] 686s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1-plugin armhf 1:1.8.3-1ubuntu1 [18.1 kB] 686s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1 armhf 1:1.8.3-1ubuntu1 [52.1 kB] 686s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf liburcu8t64 armhf 0.14.1-1 [56.6 kB] 686s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf libuv1t64 armhf 1.48.0-7 [83.3 kB] 686s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-data all 2:1.8.10-2 [116 kB] 686s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-6 armhf 2:1.8.10-2 [587 kB] 686s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf libxau6 armhf 1:1.0.11-1 [6558 B] 686s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.2-1 [276 kB] 686s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf pci.ids all 0.0~2024.10.24-1 [279 kB] 686s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu11 [9920 B] 686s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth armhf 24.004.60-1ubuntu11 [142 kB] 686s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-gdbm armhf 3.12.7-3 [28.7 kB] 686s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf ufw all 0.36.2-8 [170 kB] 686s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf usbutils armhf 1:018-1 [76.1 kB] 686s Get:95 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg-dev all 1.22.11ubuntu3 [1088 kB] 686s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf libdpkg-perl all 1.22.11ubuntu3 [279 kB] 686s Get:97 http://ftpmaster.internal/ubuntu plucky/main armhf libarchive13t64 armhf 3.7.4-1.1 [331 kB] 686s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7 [25.7 kB] 686s Get:99 http://ftpmaster.internal/ubuntu plucky/main armhf libflashrom1 armhf 1.4.0-3ubuntu1 [141 kB] 686s Get:100 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 686s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB] 686s Get:102 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd2 armhf 1.9.26-2 [125 kB] 686s Get:103 http://ftpmaster.internal/ubuntu plucky/main armhf libxmlb2 armhf 0.3.21-1 [57.7 kB] 686s Get:104 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 1.9.26-2 [4404 kB] 687s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-utils3 armhf 3.2.1-1 [17.4 kB] 687s Get:106 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-crypto3 armhf 3.2.1-1 [22.4 kB] 687s Get:107 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-fs3 armhf 3.2.1-1 [34.3 kB] 687s Get:108 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-loop3 armhf 3.2.1-1 [6552 B] 687s Get:109 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize1 armhf 2.11-1ubuntu1 [12.0 kB] 687s Get:110 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize-common all 2.11-1ubuntu1 [3584 B] 687s Get:111 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-mdraid3 armhf 3.2.1-1 [13.4 kB] 687s Get:112 http://ftpmaster.internal/ubuntu plucky/main armhf libnvme1t64 armhf 1.11-1 [73.8 kB] 687s Get:113 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-nvme3 armhf 3.2.1-1 [17.6 kB] 687s Get:114 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-part3 armhf 3.2.1-1 [16.5 kB] 687s Get:115 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-swap3 armhf 3.2.1-1 [8952 B] 687s Get:116 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev3 armhf 3.2.1-1 [44.2 kB] 687s Get:117 http://ftpmaster.internal/ubuntu plucky/main armhf libgpgme11t64 armhf 1.23.2-5ubuntu4 [123 kB] 687s Get:118 http://ftpmaster.internal/ubuntu plucky/main armhf libinih1 armhf 58-1ubuntu1 [6750 B] 687s Get:119 http://ftpmaster.internal/ubuntu plucky/main armhf libldap-common all 2.6.8+dfsg-1~exp4ubuntu3 [32.3 kB] 687s Get:120 http://ftpmaster.internal/ubuntu plucky/main armhf libldap2 armhf 2.6.8+dfsg-1~exp4ubuntu3 [173 kB] 687s Get:121 http://ftpmaster.internal/ubuntu plucky/main armhf libnspr4 armhf 2:4.35-1.1ubuntu2 [94.1 kB] 687s Get:122 http://ftpmaster.internal/ubuntu plucky/main armhf libsgutils2-1.46-2 armhf 1.46-3ubuntu5 [82.5 kB] 687s Get:123 http://ftpmaster.internal/ubuntu plucky/main armhf libssh2-1t64 armhf 1.11.1-1 [116 kB] 687s Get:124 http://ftpmaster.internal/ubuntu plucky/main armhf udisks2 armhf 2.10.1-11ubuntu1 [278 kB] 687s Get:125 http://ftpmaster.internal/ubuntu plucky/main armhf libudisks2-0 armhf 2.10.1-11ubuntu1 [142 kB] 687s Get:126 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B] 687s Get:127 http://ftpmaster.internal/ubuntu plucky/main armhf pastebinit all 1.7.1-1 [14.9 kB] 687s Get:128 http://ftpmaster.internal/ubuntu plucky/main armhf python3-certifi all 2024.8.30+dfsg-1 [9742 B] 687s Get:129 http://ftpmaster.internal/ubuntu plucky/main armhf python3-configobj all 5.0.9-1 [33.9 kB] 687s Get:130 http://ftpmaster.internal/ubuntu plucky/main armhf python3-idna all 3.8-2 [47.0 kB] 687s Get:131 http://ftpmaster.internal/ubuntu plucky/main armhf python3-more-itertools all 10.5.0-1 [56.2 kB] 687s Get:132 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jaraco.functools all 4.1.0-1 [11.8 kB] 687s Get:133 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-2 [8396 B] 687s Get:134 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jsonpatch all 1.32-4 [12.2 kB] 687s Get:135 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.uri all 1.0.6-4 [13.6 kB] 687s Get:136 http://ftpmaster.internal/ubuntu plucky/main armhf python3-wadllib all 2.0.0-1 [36.7 kB] 687s Get:137 http://ftpmaster.internal/ubuntu plucky/main armhf python3-oauthlib all 3.2.2-2 [89.8 kB] 687s Get:138 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.restfulclient all 0.14.6-2 [50.9 kB] 687s Get:139 http://ftpmaster.internal/ubuntu plucky/main armhf python3-systemd armhf 235-1build5 [44.0 kB] 687s Get:140 http://ftpmaster.internal/ubuntu plucky/main armhf python3-typeguard all 4.4.1-1 [29.0 kB] 687s Get:141 http://ftpmaster.internal/ubuntu plucky/main armhf python3-urllib3 all 2.0.7-2ubuntu0.1 [93.1 kB] 687s Get:142 http://ftpmaster.internal/ubuntu plucky/main armhf python3-zipp all 3.21.0-1 [10.2 kB] 687s Get:143 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils armhf 1.46-3ubuntu5 [816 kB] 687s Get:144 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils-udev all 1.46-3ubuntu5 [5916 B] 687s Get:145 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-cryptsetup armhf 256.5-2ubuntu4 [122 kB] 687s Get:146 http://ftpmaster.internal/ubuntu plucky/main armhf ssh-import-id all 5.11-0ubuntu3 [10.1 kB] 688s Preconfiguring packages ... 688s Fetched 45.5 MB in 3s (13.0 MB/s) 688s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 688s Preparing to unpack .../motd-news-config_13.5ubuntu3_all.deb ... 688s Unpacking motd-news-config (13.5ubuntu3) over (13.3ubuntu6) ... 688s Preparing to unpack .../base-files_13.5ubuntu3_armhf.deb ... 688s Unpacking base-files (13.5ubuntu3) over (13.3ubuntu6) ... 688s Setting up base-files (13.5ubuntu3) ... 688s Installing new version of config file /etc/issue ... 688s Installing new version of config file /etc/issue.net ... 688s Installing new version of config file /etc/lsb-release ... 689s motd-news.service is a disabled or a static unit not running, not starting it. 689s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 689s Preparing to unpack .../dpkg_1.22.11ubuntu3_armhf.deb ... 689s Unpacking dpkg (1.22.11ubuntu3) over (1.22.11ubuntu1) ... 689s Setting up dpkg (1.22.11ubuntu3) ... 689s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 689s Preparing to unpack .../perl_5.40.0-7_armhf.deb ... 689s Unpacking perl (5.40.0-7) over (5.38.2-5) ... 689s Selecting previously unselected package perl-modules-5.40. 689s Preparing to unpack .../perl-modules-5.40_5.40.0-7_all.deb ... 689s Unpacking perl-modules-5.40 (5.40.0-7) ... 690s Selecting previously unselected package libperl5.40:armhf. 690s Preparing to unpack .../libperl5.40_5.40.0-7_armhf.deb ... 690s Unpacking libperl5.40:armhf (5.40.0-7) ... 690s Preparing to unpack .../perl-base_5.40.0-7_armhf.deb ... 690s Unpacking perl-base (5.40.0-7) over (5.38.2-5) ... 690s Setting up perl-base (5.40.0-7) ... 690s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61464 files and directories currently installed.) 690s Preparing to unpack .../liblocale-gettext-perl_1.07-7build1_armhf.deb ... 690s Unpacking liblocale-gettext-perl (1.07-7build1) over (1.07-7) ... 690s Preparing to unpack .../libtext-iconv-perl_1.7-8build4_armhf.deb ... 690s Unpacking libtext-iconv-perl:armhf (1.7-8build4) over (1.7-8build3) ... 690s Preparing to unpack .../libtext-charwidth-perl_0.04-11build4_armhf.deb ... 690s Unpacking libtext-charwidth-perl:armhf (0.04-11build4) over (0.04-11build3) ... 690s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-9_armhf.deb ... 690s Unpacking libdb5.3t64:armhf (5.3.28+dfsg2-9) over (5.3.28+dfsg2-7) ... 690s Setting up libdb5.3t64:armhf (5.3.28+dfsg2-9) ... 690s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61464 files and directories currently installed.) 690s Preparing to unpack .../base-passwd_3.6.5_armhf.deb ... 690s Unpacking base-passwd (3.6.5) over (3.6.4) ... 690s Setting up base-passwd (3.6.5) ... 690s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61465 files and directories currently installed.) 690s Preparing to unpack .../0-python3.12_3.12.7-3_armhf.deb ... 691s Unpacking python3.12 (3.12.7-3) over (3.12.7-1) ... 691s Preparing to unpack .../1-python3.12-minimal_3.12.7-3_armhf.deb ... 691s Unpacking python3.12-minimal (3.12.7-3) over (3.12.7-1) ... 691s Preparing to unpack .../2-libpython3.12-stdlib_3.12.7-3_armhf.deb ... 691s Unpacking libpython3.12-stdlib:armhf (3.12.7-3) over (3.12.7-1) ... 691s Preparing to unpack .../3-libpython3.12-minimal_3.12.7-3_armhf.deb ... 691s Unpacking libpython3.12-minimal:armhf (3.12.7-3) over (3.12.7-1) ... 691s Preparing to unpack .../4-tzdata_2024b-1ubuntu2_all.deb ... 691s Unpacking tzdata (2024b-1ubuntu2) over (2024a-4ubuntu1) ... 691s Preparing to unpack .../5-libnss-systemd_256.5-2ubuntu4_armhf.deb ... 691s Unpacking libnss-systemd:armhf (256.5-2ubuntu4) over (256.5-2ubuntu3) ... 691s Preparing to unpack .../6-systemd-timesyncd_256.5-2ubuntu4_armhf.deb ... 691s Unpacking systemd-timesyncd (256.5-2ubuntu4) over (256.5-2ubuntu3) ... 691s Preparing to unpack .../7-systemd-resolved_256.5-2ubuntu4_armhf.deb ... 691s Unpacking systemd-resolved (256.5-2ubuntu4) over (256.5-2ubuntu3) ... 691s Preparing to unpack .../8-libsystemd-shared_256.5-2ubuntu4_armhf.deb ... 691s Unpacking libsystemd-shared:armhf (256.5-2ubuntu4) over (256.5-2ubuntu3) ... 691s Preparing to unpack .../9-libsystemd0_256.5-2ubuntu4_armhf.deb ... 691s Unpacking libsystemd0:armhf (256.5-2ubuntu4) over (256.5-2ubuntu3) ... 691s Setting up libsystemd0:armhf (256.5-2ubuntu4) ... 691s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61464 files and directories currently installed.) 691s Preparing to unpack .../systemd-sysv_256.5-2ubuntu4_armhf.deb ... 691s Unpacking systemd-sysv (256.5-2ubuntu4) over (256.5-2ubuntu3) ... 691s Preparing to unpack .../libpam-systemd_256.5-2ubuntu4_armhf.deb ... 691s Unpacking libpam-systemd:armhf (256.5-2ubuntu4) over (256.5-2ubuntu3) ... 691s Preparing to unpack .../systemd_256.5-2ubuntu4_armhf.deb ... 691s Unpacking systemd (256.5-2ubuntu4) over (256.5-2ubuntu3) ... 692s Preparing to unpack .../udev_256.5-2ubuntu4_armhf.deb ... 692s Unpacking udev (256.5-2ubuntu4) over (256.5-2ubuntu3) ... 692s Preparing to unpack .../libudev1_256.5-2ubuntu4_armhf.deb ... 692s Unpacking libudev1:armhf (256.5-2ubuntu4) over (256.5-2ubuntu3) ... 692s Setting up libudev1:armhf (256.5-2ubuntu4) ... 692s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61464 files and directories currently installed.) 692s Preparing to unpack .../0-python3-problem-report_2.30.0-0ubuntu5_all.deb ... 692s Unpacking python3-problem-report (2.30.0-0ubuntu5) over (2.30.0-0ubuntu4) ... 692s Preparing to unpack .../1-python3-apport_2.30.0-0ubuntu5_all.deb ... 692s Unpacking python3-apport (2.30.0-0ubuntu5) over (2.30.0-0ubuntu4) ... 692s Preparing to unpack .../2-python3-gi_3.50.0-3_armhf.deb ... 692s Unpacking python3-gi (3.50.0-3) over (3.48.2-1) ... 692s Preparing to unpack .../3-apport-core-dump-handler_2.30.0-0ubuntu5_all.deb ... 692s Unpacking apport-core-dump-handler (2.30.0-0ubuntu5) over (2.30.0-0ubuntu4) ... 692s Preparing to unpack .../4-apport_2.30.0-0ubuntu5_all.deb ... 692s Unpacking apport (2.30.0-0ubuntu5) over (2.30.0-0ubuntu4) ... 693s Preparing to unpack .../5-libbsd0_0.12.2-2_armhf.deb ... 693s Unpacking libbsd0:armhf (0.12.2-2) over (0.12.2-1) ... 693s Setting up libbsd0:armhf (0.12.2-2) ... 693s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61456 files and directories currently installed.) 693s Preparing to unpack .../0-libedit2_3.1-20240808-1_armhf.deb ... 693s Unpacking libedit2:armhf (3.1-20240808-1) over (3.1-20240517-1) ... 693s Preparing to unpack .../1-openssh-sftp-server_1%3a9.7p1-7ubuntu5_armhf.deb ... 693s Unpacking openssh-sftp-server (1:9.7p1-7ubuntu5) over (1:9.7p1-7ubuntu4) ... 693s Preparing to unpack .../2-openssh-server_1%3a9.7p1-7ubuntu5_armhf.deb ... 693s Unpacking openssh-server (1:9.7p1-7ubuntu5) over (1:9.7p1-7ubuntu4) ... 693s Preparing to unpack .../3-openssh-client_1%3a9.7p1-7ubuntu5_armhf.deb ... 693s Unpacking openssh-client (1:9.7p1-7ubuntu5) over (1:9.7p1-7ubuntu4) ... 693s Preparing to unpack .../4-libatomic1_14.2.0-8ubuntu1_armhf.deb ... 693s Unpacking libatomic1:armhf (14.2.0-8ubuntu1) over (14.2.0-4ubuntu2) ... 693s Preparing to unpack .../5-gcc-14-base_14.2.0-8ubuntu1_armhf.deb ... 693s Unpacking gcc-14-base:armhf (14.2.0-8ubuntu1) over (14.2.0-4ubuntu2) ... 693s Setting up gcc-14-base:armhf (14.2.0-8ubuntu1) ... 693s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61456 files and directories currently installed.) 693s Preparing to unpack .../libstdc++6_14.2.0-8ubuntu1_armhf.deb ... 693s Unpacking libstdc++6:armhf (14.2.0-8ubuntu1) over (14.2.0-4ubuntu2) ... 693s Setting up libstdc++6:armhf (14.2.0-8ubuntu1) ... 693s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61456 files and directories currently installed.) 693s Preparing to unpack .../libgcc-s1_14.2.0-8ubuntu1_armhf.deb ... 693s Unpacking libgcc-s1:armhf (14.2.0-8ubuntu1) over (14.2.0-4ubuntu2) ... 693s Setting up libgcc-s1:armhf (14.2.0-8ubuntu1) ... 693s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61456 files and directories currently installed.) 693s Preparing to unpack .../libattr1_1%3a2.5.2-2_armhf.deb ... 693s Unpacking libattr1:armhf (1:2.5.2-2) over (1:2.5.2-1build2) ... 693s Setting up libattr1:armhf (1:2.5.2-2) ... 693s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61456 files and directories currently installed.) 693s Preparing to unpack .../libcap-ng0_0.8.5-3build1_armhf.deb ... 693s Unpacking libcap-ng0:armhf (0.8.5-3build1) over (0.8.5-1) ... 693s Setting up libcap-ng0:armhf (0.8.5-3build1) ... 693s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61456 files and directories currently installed.) 693s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_armhf.deb ... 693s Unpacking libgnutls30t64:armhf (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 693s Setting up libgnutls30t64:armhf (3.8.8-2ubuntu1) ... 693s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61456 files and directories currently installed.) 693s Preparing to unpack .../install-info_7.1.1-1_armhf.deb ... 693s Unpacking install-info (7.1.1-1) over (7.1-3build2) ... 693s Setting up install-info (7.1.1-1) ... 694s (Reading database ... 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(256.5-2ubuntu4) ... 699s Preparing to unpack .../100-ssh-import-id_5.11-0ubuntu3_all.deb ... 699s Unpacking ssh-import-id (5.11-0ubuntu3) over (5.11-0ubuntu2) ... 699s Setting up libpipeline1:armhf (1.5.8-1) ... 699s Setting up motd-news-config (13.5ubuntu3) ... 699s Setting up libtext-iconv-perl:armhf (1.7-8build4) ... 699s Setting up python3-more-itertools (10.5.0-1) ... 699s Setting up libtext-charwidth-perl:armhf (0.04-11build4) ... 699s Setting up liburcu8t64:armhf (0.14.1-1) ... 699s Setting up libxau6:armhf (1:1.0.11-1) ... 699s Setting up libkeyutils1:armhf (1.6.3-4ubuntu2) ... 699s Setting up pci.ids (0.0~2024.10.24-1) ... 699s Setting up libnewt0.52:armhf (0.52.24-2ubuntu4) ... 699s Setting up python3-jaraco.functools (4.1.0-1) ... 699s Setting up python3-problem-report (2.30.0-0ubuntu5) ... 699s Setting up distro-info-data (0.63) ... 699s Setting up libfastjson4:armhf (1.2304.0-2) ... 699s Setting up libinih1:armhf (58-1ubuntu1) ... 699s Setting up libmaxminddb0:armhf (1.11.0-1) ... 699s Setting up python3.12-gdbm (3.12.7-3) ... 699s Setting up libxmlb2:armhf (0.3.21-1) ... 699s Setting up libedit2:armhf (3.1-20240808-1) ... 699s Setting up python3-typeguard (4.4.1-1) ... 700s Setting up libuv1t64:armhf (1.48.0-7) ... 700s Setting up libpython3.12-minimal:armhf (3.12.7-3) ... 700s Setting up libnghttp2-14:armhf (1.64.0-1) ... 700s Setting up libsgutils2-1.46-2:armhf (1.46-3ubuntu5) ... 700s Setting up pastebinit (1.7.1-1) ... 700s Setting up ufw (0.36.2-8) ... 700s Setting up python3-lazr.uri (1.0.6-4) ... 701s Setting up python3-zipp (3.21.0-1) ... 701s Setting up libnetplan1:armhf (1.1.1-1) ... 701s Setting up python3-newt:armhf (0.52.24-2ubuntu4) ... 701s Setting up libldap-common (2.6.8+dfsg-1~exp4ubuntu3) ... 701s Setting up usbutils (1:018-1) ... 701s Setting up xxd (2:9.1.0777-1ubuntu1) ... 701s Setting up libelf1t64:armhf (0.192-4) ... 701s Setting up python3-apport (2.30.0-0ubuntu5) ... 701s Setting up libdw1t64:armhf (0.192-4) ... 701s Setting up tzdata (2024b-1ubuntu2) ... 701s 701s Current default time zone: 'Etc/UTC' 701s Local time is now: Thu Nov 14 21:48:25 UTC 2024. 701s Universal Time is now: Thu Nov 14 21:48:25 UTC 2024. 701s Run 'dpkg-reconfigure tzdata' if you wish to change it. 701s 701s Setting up libftdi1-2:armhf (1.5-7) ... 701s Setting up libflashrom1:armhf (1.4.0-3ubuntu1) ... 701s Setting up python3-oauthlib (3.2.2-2) ... 701s Setting up python3-configobj (5.0.9-1) ... 701s Setting up vim-common (2:9.1.0777-1ubuntu1) ... 701s Installing new version of config file /etc/vim/vimrc ... 701s Setting up python3-certifi (2024.8.30+dfsg-1) ... 701s Setting up libx11-data (2:1.8.10-2) ... 701s Setting up libnspr4:armhf (2:4.35-1.1ubuntu2) ... 701s Setting up bash-completion (1:2.14.0-2) ... 701s Setting up python3-wadllib (2.0.0-1) ... 702s Setting up python3-gi (3.50.0-3) ... 702s Setting up libbytesize-common (2.11-1ubuntu1) ... 702s Setting up libblockdev-utils3:armhf (3.2.1-1) ... 702s Setting up libpng16-16t64:armhf (1.6.44-2) ... 702s Setting up libmnl0:armhf (1.0.5-3) ... 702s Setting up libatomic1:armhf (14.2.0-8ubuntu1) ... 702s Setting up python3-idna (3.8-2) ... 702s Setting up libsystemd-shared:armhf (256.5-2ubuntu4) ... 702s Setting up dhcpcd-base (1:10.1.0-2) ... 702s Setting up python3-urllib3 (2.0.7-2ubuntu0.1) ... 702s Setting up python3-netifaces:armhf (0.11.0-2build4) ... 702s Setting up libutempter0:armhf (1.2.1-4) ... 702s Setting up nano (8.2-1) ... 702s Setting up libblockdev-fs3:armhf (3.2.1-1) ... 702s Setting up perl-modules-5.40 (5.40.0-7) ... 702s Setting up libnetfilter-conntrack3:armhf (1.1.0-1) ... 702s Setting up python3-json-pointer (2.4-2) ... 702s Setting up libtraceevent1:armhf (1:1.8.3-1ubuntu1) ... 702s Setting up libx11-6:armhf (2:1.8.10-2) ... 702s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 702s Setting up mawk (1.3.4.20240905-1) ... 702s Setting up libbytesize1:armhf (2.11-1ubuntu1) ... 702s Setting up libgpgme11t64:armhf (1.23.2-5ubuntu4) ... 702s Setting up libssh2-1t64:armhf (1.11.1-1) ... 702s Setting up python3-lazr.restfulclient (0.14.6-2) ... 702s Setting up libdrm-common (2.4.123-1) ... 702s Setting up libarchive13t64:armhf (3.7.4-1.1) ... 702s Setting up libjson-c5:armhf (0.18+ds-1) ... 702s Setting up libevdev2:armhf (1.13.3+dfsg-1) ... 702s Setting up libldap2:armhf (2.6.8+dfsg-1~exp4ubuntu3) ... 702s Setting up info (7.1.1-1) ... 702s Setting up liblocale-gettext-perl (1.07-7build1) ... 702s Setting up libbpf1:armhf (1:1.5.0-1) ... 702s Setting up libudisks2-0:armhf (2.10.1-11ubuntu1) ... 702s Setting up python3-systemd (235-1build5) ... 703s Setting up python3-cffi-backend:armhf (1.17.1-2) ... 703s Setting up libpopt0:armhf (1.19+dfsg-2) ... 703s Setting up sg3-utils (1.46-3ubuntu5) ... 703s Setting up python3.12-minimal (3.12.7-3) ... 703s Setting up libpython3.12-stdlib:armhf (3.12.7-3) ... 703s Setting up libblockdev-mdraid3:armhf (3.2.1-1) ... 703s Setting up libblockdev-crypto3:armhf (3.2.1-1) ... 703s Setting up libblockdev-swap3:armhf (3.2.1-1) ... 703s Setting up iproute2 (6.10.0-2ubuntu1) ... 703s Setting up openssh-client (1:9.7p1-7ubuntu5) ... 704s Setting up ssh-import-id (5.11-0ubuntu3) ... 704s Setting up python3-jsonpatch (1.32-4) ... 704s Setting up python3.12 (3.12.7-3) ... 705s Setting up libblockdev-loop3:armhf (3.2.1-1) ... 705s Setting up systemd (256.5-2ubuntu4) ... 705s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. 705s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 705s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. 706s Setting up vim-tiny (2:9.1.0777-1ubuntu1) ... 706s Setting up libblockdev3:armhf (3.2.1-1) ... 706s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ... 706s Setting up libjson-glib-1.0-0:armhf (1.10.0+ds-3) ... 706s Setting up libblockdev-part3:armhf (3.2.1-1) ... 706s Setting up sg3-utils-udev (1.46-3ubuntu5) ... 706s update-initramfs: deferring update (trigger activated) 706s Setting up libperl5.40:armhf (5.40.0-7) ... 706s Setting up perl (5.40.0-7) ... 706s Setting up systemd-cryptsetup (256.5-2ubuntu4) ... 706s Setting up libnvme1t64 (1.11-1) ... 706s Setting up systemd-timesyncd (256.5-2ubuntu4) ... 706s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 706s Setting up udev (256.5-2ubuntu4) ... 707s Setting up libdpkg-perl (1.22.11ubuntu3) ... 707s Setting up libblockdev-nvme3:armhf (3.2.1-1) ... 707s Setting up libdrm2:armhf (2.4.123-1) ... 707s Setting up whiptail (0.52.24-2ubuntu4) ... 707s Setting up libtraceevent1-plugin:armhf (1:1.8.3-1ubuntu1) ... 707s Setting up libplymouth5:armhf (24.004.60-1ubuntu11) ... 707s Setting up python3-netplan (1.1.1-1) ... 707s Setting up netplan-generator (1.1.1-1) ... 707s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 707s Setting up systemd-resolved (256.5-2ubuntu4) ... 708s Setting up openssh-sftp-server (1:9.7p1-7ubuntu5) ... 708s Setting up udisks2 (2.10.1-11ubuntu1) ... 708s vda: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/uevent': Permission denied 708s vda1: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied 708s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied 708s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied 708s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied 708s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied 708s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied 708s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied 708s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied 708s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied 708s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied 708s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied 708s loop8: Failed to write 'change' to '/sys/devices/virtual/block/loop8/uevent': Permission denied 708s Setting up systemd-sysv (256.5-2ubuntu4) ... 708s Setting up openssh-server (1:9.7p1-7ubuntu5) ... 709s Setting up plymouth (24.004.60-1ubuntu11) ... 709s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 710s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 710s Setting up libfwupd2:armhf (1.9.26-2) ... 710s Setting up libnss-systemd:armhf (256.5-2ubuntu4) ... 710s Setting up dpkg-dev (1.22.11ubuntu3) ... 710s Setting up netplan.io (1.1.1-1) ... 710s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu11) ... 710s update-initramfs: deferring update (trigger activated) 710s Setting up libpam-systemd:armhf (256.5-2ubuntu4) ... 710s Setting up fwupd (1.9.26-2) ... 710s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 710s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 710s fwupd.service is a disabled or a static unit not running, not starting it. 711s Setting up apport-core-dump-handler (2.30.0-0ubuntu5) ... 711s Setting up apport (2.30.0-0ubuntu5) ... 711s Installing new version of config file /etc/apport/crashdb.conf ... 712s apport-autoreport.service is a disabled or a static unit not running, not starting it. 712s Processing triggers for dbus (1.14.10-4ubuntu5) ... 712s Processing triggers for shared-mime-info (2.4-5) ... 712s Processing triggers for install-info (7.1.1-1) ... 712s Processing triggers for initramfs-tools (0.142ubuntu34) ... 712s Processing triggers for libc-bin (2.40-1ubuntu3) ... 713s Processing triggers for rsyslog (8.2406.0-1ubuntu2) ... 713s Processing triggers for man-db (2.12.1-3) ... 714s Reading package lists... 715s Building dependency tree... 715s Reading state information... 715s The following packages will be REMOVED: 715s libperl5.38t64* perl-modules-5.38* python3-netifaces* 716s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 716s After this operation, 41.7 MB disk space will be freed. 716s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61506 files and directories currently installed.) 716s Removing libperl5.38t64:armhf (5.38.2-5) ... 716s Removing perl-modules-5.38 (5.38.2-5) ... 716s Removing python3-netifaces:armhf (0.11.0-2build4) ... 716s Processing triggers for man-db (2.12.1-3) ... 716s Processing triggers for libc-bin (2.40-1ubuntu3) ... 718s autopkgtest [21:48:42]: rebooting testbed after setup commands that affected boot 818s Reading package lists... 818s Building dependency tree... 818s Reading state information... 818s Starting pkgProblemResolver with broken count: 0 818s Starting 2 pkgProblemResolver with broken count: 0 818s Done 819s The following additional packages will be installed: 819s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx 819s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 819s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 819s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 819s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 819s libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 819s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 819s libxslt1.1 libxss1 python-matplotlib-data python3-all python3-appdirs 819s python3-biopython python3-brotli python3-cairo python3-contourpy 819s python3-cycler python3-dateutil python3-decorator python3-fonttools 819s python3-freetype python3-fs python3-kiwisolver python3-lxml python3-lz4 819s python3-matplotlib python3-mpmath python3-numpy python3-packaging 819s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 819s python3-reportlab python3-rlpycairo python3-scipy python3-six python3-sympy 819s python3-tk python3-treetime python3-tz python3-ufolib2 python3.12-tk 819s sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings 819s xfonts-utils xml-core 819s Suggested packages: 819s blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 819s libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 bwa clustalo clustalw 819s dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons 819s python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools 819s t-coffee wise python-cycler-doc python-lxml-doc cm-super-minimal dvipng 819s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 819s librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi-cairo 819s python3-gobject python3-pyqt5 python3-sip python3-tornado 819s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc 819s gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc 819s python3-statsmodels python-pil-doc pdf-viewer python3-egenix-mxtexttools 819s python-reportlab-doc rl-accel rl-renderpm python-scipy-doc 819s texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.13-tk 819s sgml-base-doc debhelper 819s Recommended packages: 819s javascript-common python-biopython-doc ncbi-blast+ python3-bs4 819s python3-cssselect python3-html5lib python3-bottleneck python3-numexpr 819s python3-odf python3-openpyxl python3-tables python3-olefile 819s fonts-dejavu-extra g++ | c++-compiler isympy-common 819s The following NEW packages will be installed: 819s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 819s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 819s libfontenc1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 819s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 819s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 819s libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 819s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 819s libxslt1.1 libxss1 python-matplotlib-data python3-all python3-appdirs 819s python3-biopython python3-brotli python3-cairo python3-contourpy 819s python3-cycler python3-dateutil python3-decorator python3-fonttools 819s python3-freetype python3-fs python3-kiwisolver python3-lxml python3-lz4 819s python3-matplotlib python3-mpmath python3-numpy python3-packaging 819s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 819s python3-reportlab python3-rlpycairo python3-scipy python3-six python3-sympy 819s python3-tk python3-treetime python3-tz python3-ufolib2 python3.12-tk 819s sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings 819s xfonts-utils xml-core 819s 0 upgraded, 86 newly installed, 0 to remove and 0 not upgraded. 819s Need to get 78.9 MB/78.9 MB of archives. 819s After this operation, 288 MB of additional disk space will be used. 819s Get:1 /tmp/autopkgtest.lJjZxr/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [720 B] 819s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf sgml-base all 1.31 [11.4 kB] 819s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libtcl8.6 armhf 8.6.15+dfsg-2 [909 kB] 820s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 820s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 820s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 820s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libfontenc1 armhf 1:1.1.8-1build1 [11.5 kB] 820s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 820s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 820s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf xfonts-utils armhf 1:7.7+7 [90.6 kB] 820s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-urw-base35 all 20200910-8 [11.0 MB] 820s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB] 820s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB] 820s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 820s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 820s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 820s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libtk8.6 armhf 8.6.15-1 [685 kB] 820s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-7build1 [525 kB] 820s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf blt armhf 2.5.3+dfsg-7build1 [4840 B] 820s Get:20 http://ftpmaster.internal/ubuntu plucky/universe armhf fonts-lyx all 2.4.2.1-1 [171 kB] 820s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 820s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 820s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 820s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 820s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB] 820s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.22-1 [38.9 kB] 820s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 820s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB] 820s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 820s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.0.1-1 [463 kB] 820s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 820s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu2 [125 kB] 820s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 820s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 820s Get:35 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 820s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 820s Get:37 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 820s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 820s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu2 [151 kB] 821s Get:40 http://ftpmaster.internal/ubuntu plucky/universe armhf libqhull-r8.0 armhf 2020.2-6build1 [173 kB] 821s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libraqm0 armhf 0.10.1-1build1 [12.4 kB] 821s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB] 821s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 821s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB] 821s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 821s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpdemux2 armhf 1.4.0-0.1 [11.8 kB] 821s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpmux3 armhf 1.4.0-0.1 [22.5 kB] 821s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf libxslt1.1 armhf 1.1.39-0exp1ubuntu1 [150 kB] 821s Get:49 http://ftpmaster.internal/ubuntu plucky/universe armhf python-matplotlib-data all 3.8.3-3 [2928 kB] 821s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf python3-all armhf 3.12.6-0ubuntu1 [886 B] 821s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf python3-appdirs all 1.4.4-4 [10.9 kB] 821s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 821s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-tk armhf 3.12.7-3 [112 kB] 821s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tk armhf 3.12.6-1ubuntu1 [9806 B] 821s Get:55 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pil.imagetk armhf 10.4.0-1ubuntu1 [8848 B] 821s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libopenjp2-7 armhf 2.5.0-2ubuntu1 [170 kB] 821s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf python3-pil armhf 10.4.0-1ubuntu1 [428 kB] 821s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cairo armhf 1.26.1-2 [114 kB] 821s Get:59 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-freetype all 2.5.1-1 [92.3 kB] 821s Get:60 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-rlpycairo all 0.3.0-3 [9130 B] 821s Get:61 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-reportlab all 4.2.5-1 [1107 kB] 821s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf xml-core all 0.19 [20.3 kB] 821s Get:63 http://ftpmaster.internal/ubuntu plucky/universe armhf w3c-sgml-lib all 1.3-3 [280 kB] 821s Get:64 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-biopython armhf 1.84+dfsg-4build1 [1672 kB] 821s Get:65 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-brotli armhf 1.1.0-2build2 [321 kB] 821s Get:66 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-contourpy armhf 1.3.0-2 [192 kB] 821s Get:67 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-cycler all 0.12.1-1 [9716 B] 821s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf python3-six all 1.16.0-7 [13.1 kB] 821s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf python3-dateutil all 2.9.0-2 [80.3 kB] 821s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 821s Get:71 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.13.1-5 [16.4 MB] 821s Get:72 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 821s Get:73 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-mpmath all 1.3.0-1 [425 kB] 821s Get:74 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sympy all 1.13.3-1 [4228 kB] 822s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tz all 2024.1-2 [31.4 kB] 822s Get:76 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fs all 2.4.16-4 [91.3 kB] 822s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lxml armhf 5.3.0-1 [1234 kB] 822s Get:78 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-lz4 armhf 4.0.2+dfsg-1build4 [24.8 kB] 822s Get:79 http://ftpmaster.internal/ubuntu plucky/universe armhf unicode-data all 15.1.0-1 [8878 kB] 822s Get:80 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fonttools armhf 4.46.0-1build2 [1402 kB] 822s Get:81 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-kiwisolver armhf 1.4.7-2build1 [71.1 kB] 822s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.1-1 [41.4 kB] 822s Get:83 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-matplotlib armhf 3.8.3-3 [4500 kB] 822s Get:84 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas-lib armhf 2.2.3+dfsg-5 [4728 kB] 822s Get:85 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas all 2.2.3+dfsg-5 [3112 kB] 822s Get:86 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-treetime all 0.11.4-1 [941 kB] 823s Fetched 78.9 MB in 3s (25.6 MB/s) 823s Selecting previously unselected package sgml-base. 823s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59565 files and directories currently installed.) 823s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 823s Unpacking sgml-base (1.31) ... 823s Selecting previously unselected package libtcl8.6:armhf. 823s Preparing to unpack .../01-libtcl8.6_8.6.15+dfsg-2_armhf.deb ... 823s Unpacking libtcl8.6:armhf (8.6.15+dfsg-2) ... 823s Selecting previously unselected package libfreetype6:armhf. 823s Preparing to unpack .../02-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 823s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 823s Selecting previously unselected package fonts-dejavu-mono. 823s Preparing to unpack .../03-fonts-dejavu-mono_2.37-8_all.deb ... 823s Unpacking fonts-dejavu-mono (2.37-8) ... 823s Selecting previously unselected package fonts-dejavu-core. 823s Preparing to unpack .../04-fonts-dejavu-core_2.37-8_all.deb ... 823s Unpacking fonts-dejavu-core (2.37-8) ... 823s Selecting previously unselected package libfontenc1:armhf. 823s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build1_armhf.deb ... 823s Unpacking libfontenc1:armhf (1:1.1.8-1build1) ... 823s Selecting previously unselected package x11-common. 823s Preparing to unpack .../06-x11-common_1%3a7.7+23ubuntu3_all.deb ... 823s Unpacking x11-common (1:7.7+23ubuntu3) ... 823s Selecting previously unselected package xfonts-encodings. 823s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 823s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 823s Selecting previously unselected package xfonts-utils. 823s Preparing to unpack .../08-xfonts-utils_1%3a7.7+7_armhf.deb ... 823s Unpacking xfonts-utils (1:7.7+7) ... 823s Selecting previously unselected package fonts-urw-base35. 823s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ... 823s Unpacking fonts-urw-base35 (20200910-8) ... 823s Selecting previously unselected package fontconfig-config. 823s Preparing to unpack .../10-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ... 824s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 824s Selecting previously unselected package libfontconfig1:armhf. 824s Preparing to unpack .../11-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ... 824s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 824s Selecting previously unselected package libxrender1:armhf. 824s Preparing to unpack .../12-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 824s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 824s Selecting previously unselected package libxft2:armhf. 824s Preparing to unpack .../13-libxft2_2.3.6-1build1_armhf.deb ... 824s Unpacking libxft2:armhf (2.3.6-1build1) ... 824s Selecting previously unselected package libxss1:armhf. 824s Preparing to unpack .../14-libxss1_1%3a1.2.3-1build3_armhf.deb ... 824s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 824s Selecting previously unselected package libtk8.6:armhf. 824s Preparing to unpack .../15-libtk8.6_8.6.15-1_armhf.deb ... 824s Unpacking libtk8.6:armhf (8.6.15-1) ... 824s Selecting previously unselected package tk8.6-blt2.5. 824s Preparing to unpack .../16-tk8.6-blt2.5_2.5.3+dfsg-7build1_armhf.deb ... 824s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 824s Selecting previously unselected package blt. 824s Preparing to unpack .../17-blt_2.5.3+dfsg-7build1_armhf.deb ... 824s Unpacking blt (2.5.3+dfsg-7build1) ... 824s Selecting previously unselected package fonts-lyx. 824s Preparing to unpack .../18-fonts-lyx_2.4.2.1-1_all.deb ... 824s Unpacking fonts-lyx (2.4.2.1-1) ... 824s Selecting previously unselected package libblas3:armhf. 824s Preparing to unpack .../19-libblas3_3.12.0-3build2_armhf.deb ... 824s Unpacking libblas3:armhf (3.12.0-3build2) ... 824s Selecting previously unselected package libpixman-1-0:armhf. 824s Preparing to unpack .../20-libpixman-1-0_0.44.0-3_armhf.deb ... 824s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 824s Selecting previously unselected package libxcb-render0:armhf. 824s Preparing to unpack .../21-libxcb-render0_1.17.0-2_armhf.deb ... 824s Unpacking libxcb-render0:armhf (1.17.0-2) ... 824s Selecting previously unselected package libxcb-shm0:armhf. 824s Preparing to unpack .../22-libxcb-shm0_1.17.0-2_armhf.deb ... 824s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 824s Selecting previously unselected package libcairo2:armhf. 824s Preparing to unpack .../23-libcairo2_1.18.2-2_armhf.deb ... 824s Unpacking libcairo2:armhf (1.18.2-2) ... 824s Selecting previously unselected package libdeflate0:armhf. 824s Preparing to unpack .../24-libdeflate0_1.22-1_armhf.deb ... 824s Unpacking libdeflate0:armhf (1.22-1) ... 824s Selecting previously unselected package libgfortran5:armhf. 824s Preparing to unpack .../25-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 824s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 824s Selecting previously unselected package libgomp1:armhf. 824s Preparing to unpack .../26-libgomp1_14.2.0-8ubuntu1_armhf.deb ... 824s Unpacking libgomp1:armhf (14.2.0-8ubuntu1) ... 824s Selecting previously unselected package libgraphite2-3:armhf. 824s Preparing to unpack .../27-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 824s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 824s Selecting previously unselected package libharfbuzz0b:armhf. 824s Preparing to unpack .../28-libharfbuzz0b_10.0.1-1_armhf.deb ... 824s Unpacking libharfbuzz0b:armhf (10.0.1-1) ... 824s Selecting previously unselected package libimagequant0:armhf. 824s Preparing to unpack .../29-libimagequant0_2.18.0-1build1_armhf.deb ... 824s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 824s Selecting previously unselected package libjpeg-turbo8:armhf. 824s Preparing to unpack .../30-libjpeg-turbo8_2.1.5-2ubuntu2_armhf.deb ... 824s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 824s Selecting previously unselected package libjpeg8:armhf. 824s Preparing to unpack .../31-libjpeg8_8c-2ubuntu11_armhf.deb ... 824s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 824s Selecting previously unselected package libjs-jquery. 824s Preparing to unpack .../32-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 824s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 824s Selecting previously unselected package libjs-jquery-ui. 824s Preparing to unpack .../33-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 824s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 824s Selecting previously unselected package liblapack3:armhf. 824s Preparing to unpack .../34-liblapack3_3.12.0-3build2_armhf.deb ... 824s Unpacking liblapack3:armhf (3.12.0-3build2) ... 824s Selecting previously unselected package liblbfgsb0:armhf. 824s Preparing to unpack .../35-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 824s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 824s Selecting previously unselected package liblcms2-2:armhf. 824s Preparing to unpack .../36-liblcms2-2_2.16-2_armhf.deb ... 824s Unpacking liblcms2-2:armhf (2.16-2) ... 825s Selecting previously unselected package liblerc4:armhf. 825s Preparing to unpack .../37-liblerc4_4.0.0+ds-4ubuntu2_armhf.deb ... 825s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 825s Selecting previously unselected package libqhull-r8.0:armhf. 825s Preparing to unpack .../38-libqhull-r8.0_2020.2-6build1_armhf.deb ... 825s Unpacking libqhull-r8.0:armhf (2020.2-6build1) ... 825s Selecting previously unselected package libraqm0:armhf. 825s Preparing to unpack .../39-libraqm0_0.10.1-1build1_armhf.deb ... 825s Unpacking libraqm0:armhf (0.10.1-1build1) ... 825s Selecting previously unselected package libsharpyuv0:armhf. 825s Preparing to unpack .../40-libsharpyuv0_1.4.0-0.1_armhf.deb ... 825s Unpacking libsharpyuv0:armhf (1.4.0-0.1) ... 825s Selecting previously unselected package libjbig0:armhf. 825s Preparing to unpack .../41-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 825s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 825s Selecting previously unselected package libwebp7:armhf. 825s Preparing to unpack .../42-libwebp7_1.4.0-0.1_armhf.deb ... 825s Unpacking libwebp7:armhf (1.4.0-0.1) ... 825s Selecting previously unselected package libtiff6:armhf. 825s Preparing to unpack .../43-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 825s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 825s Selecting previously unselected package libwebpdemux2:armhf. 825s Preparing to unpack .../44-libwebpdemux2_1.4.0-0.1_armhf.deb ... 825s Unpacking libwebpdemux2:armhf (1.4.0-0.1) ... 825s Selecting previously unselected package libwebpmux3:armhf. 825s Preparing to unpack .../45-libwebpmux3_1.4.0-0.1_armhf.deb ... 825s Unpacking libwebpmux3:armhf (1.4.0-0.1) ... 825s Selecting previously unselected package libxslt1.1:armhf. 825s Preparing to unpack .../46-libxslt1.1_1.1.39-0exp1ubuntu1_armhf.deb ... 825s Unpacking libxslt1.1:armhf (1.1.39-0exp1ubuntu1) ... 825s Selecting previously unselected package python-matplotlib-data. 825s Preparing to unpack .../47-python-matplotlib-data_3.8.3-3_all.deb ... 825s Unpacking python-matplotlib-data (3.8.3-3) ... 825s Selecting previously unselected package python3-all. 825s Preparing to unpack .../48-python3-all_3.12.6-0ubuntu1_armhf.deb ... 825s Unpacking python3-all (3.12.6-0ubuntu1) ... 825s Selecting previously unselected package python3-appdirs. 825s Preparing to unpack .../49-python3-appdirs_1.4.4-4_all.deb ... 825s Unpacking python3-appdirs (1.4.4-4) ... 825s Selecting previously unselected package python3-numpy. 825s Preparing to unpack .../50-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 825s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 825s Selecting previously unselected package python3.12-tk. 825s Preparing to unpack .../51-python3.12-tk_3.12.7-3_armhf.deb ... 825s Unpacking python3.12-tk (3.12.7-3) ... 825s Selecting previously unselected package python3-tk:armhf. 825s Preparing to unpack .../52-python3-tk_3.12.6-1ubuntu1_armhf.deb ... 825s Unpacking python3-tk:armhf (3.12.6-1ubuntu1) ... 825s Selecting previously unselected package python3-pil.imagetk:armhf. 825s Preparing to unpack .../53-python3-pil.imagetk_10.4.0-1ubuntu1_armhf.deb ... 825s Unpacking python3-pil.imagetk:armhf (10.4.0-1ubuntu1) ... 825s Selecting previously unselected package libopenjp2-7:armhf. 825s Preparing to unpack .../54-libopenjp2-7_2.5.0-2ubuntu1_armhf.deb ... 825s Unpacking libopenjp2-7:armhf (2.5.0-2ubuntu1) ... 825s Selecting previously unselected package python3-pil:armhf. 825s Preparing to unpack .../55-python3-pil_10.4.0-1ubuntu1_armhf.deb ... 825s Unpacking python3-pil:armhf (10.4.0-1ubuntu1) ... 825s Selecting previously unselected package python3-cairo. 825s Preparing to unpack .../56-python3-cairo_1.26.1-2_armhf.deb ... 825s Unpacking python3-cairo (1.26.1-2) ... 825s Selecting previously unselected package python3-freetype. 825s Preparing to unpack .../57-python3-freetype_2.5.1-1_all.deb ... 825s Unpacking python3-freetype (2.5.1-1) ... 825s Selecting previously unselected package python3-rlpycairo. 825s Preparing to unpack .../58-python3-rlpycairo_0.3.0-3_all.deb ... 825s Unpacking python3-rlpycairo (0.3.0-3) ... 825s Selecting previously unselected package python3-reportlab. 825s Preparing to unpack .../59-python3-reportlab_4.2.5-1_all.deb ... 825s Unpacking python3-reportlab (4.2.5-1) ... 826s Selecting previously unselected package xml-core. 826s Preparing to unpack .../60-xml-core_0.19_all.deb ... 826s Unpacking xml-core (0.19) ... 826s Selecting previously unselected package w3c-sgml-lib. 826s Preparing to unpack .../61-w3c-sgml-lib_1.3-3_all.deb ... 826s Unpacking w3c-sgml-lib (1.3-3) ... 826s Selecting previously unselected package python3-biopython. 826s Preparing to unpack .../62-python3-biopython_1.84+dfsg-4build1_armhf.deb ... 826s Unpacking python3-biopython (1.84+dfsg-4build1) ... 826s Selecting previously unselected package python3-brotli. 826s Preparing to unpack .../63-python3-brotli_1.1.0-2build2_armhf.deb ... 826s Unpacking python3-brotli (1.1.0-2build2) ... 826s Selecting previously unselected package python3-contourpy. 826s Preparing to unpack .../64-python3-contourpy_1.3.0-2_armhf.deb ... 826s Unpacking python3-contourpy (1.3.0-2) ... 826s Selecting previously unselected package python3-cycler. 826s Preparing to unpack .../65-python3-cycler_0.12.1-1_all.deb ... 826s Unpacking python3-cycler (0.12.1-1) ... 826s Selecting previously unselected package python3-six. 826s Preparing to unpack .../66-python3-six_1.16.0-7_all.deb ... 826s Unpacking python3-six (1.16.0-7) ... 826s Selecting previously unselected package python3-dateutil. 826s Preparing to unpack .../67-python3-dateutil_2.9.0-2_all.deb ... 826s Unpacking python3-dateutil (2.9.0-2) ... 826s Selecting previously unselected package python3-decorator. 826s Preparing to unpack .../68-python3-decorator_5.1.1-5_all.deb ... 826s Unpacking python3-decorator (5.1.1-5) ... 826s Selecting previously unselected package python3-scipy. 826s Preparing to unpack .../69-python3-scipy_1.13.1-5_armhf.deb ... 826s Unpacking python3-scipy (1.13.1-5) ... 827s Selecting previously unselected package python3-ufolib2. 827s Preparing to unpack .../70-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 827s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 827s Selecting previously unselected package python3-mpmath. 827s Preparing to unpack .../71-python3-mpmath_1.3.0-1_all.deb ... 827s Unpacking python3-mpmath (1.3.0-1) ... 827s Selecting previously unselected package python3-sympy. 827s Preparing to unpack .../72-python3-sympy_1.13.3-1_all.deb ... 827s Unpacking python3-sympy (1.13.3-1) ... 827s Selecting previously unselected package python3-tz. 827s Preparing to unpack .../73-python3-tz_2024.1-2_all.deb ... 827s Unpacking python3-tz (2024.1-2) ... 827s Selecting previously unselected package python3-fs. 827s Preparing to unpack .../74-python3-fs_2.4.16-4_all.deb ... 827s Unpacking python3-fs (2.4.16-4) ... 827s Selecting previously unselected package python3-lxml:armhf. 827s Preparing to unpack .../75-python3-lxml_5.3.0-1_armhf.deb ... 827s Unpacking python3-lxml:armhf (5.3.0-1) ... 827s Selecting previously unselected package python3-lz4. 827s Preparing to unpack .../76-python3-lz4_4.0.2+dfsg-1build4_armhf.deb ... 827s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 827s Selecting previously unselected package unicode-data. 827s Preparing to unpack .../77-unicode-data_15.1.0-1_all.deb ... 827s Unpacking unicode-data (15.1.0-1) ... 827s Selecting previously unselected package python3-fonttools. 827s Preparing to unpack .../78-python3-fonttools_4.46.0-1build2_armhf.deb ... 827s Unpacking python3-fonttools (4.46.0-1build2) ... 827s Selecting previously unselected package python3-kiwisolver. 828s Preparing to unpack .../79-python3-kiwisolver_1.4.7-2build1_armhf.deb ... 828s Unpacking python3-kiwisolver (1.4.7-2build1) ... 828s Selecting previously unselected package python3-packaging. 828s Preparing to unpack .../80-python3-packaging_24.1-1_all.deb ... 828s Unpacking python3-packaging (24.1-1) ... 828s Selecting previously unselected package python3-matplotlib. 828s Preparing to unpack .../81-python3-matplotlib_3.8.3-3_armhf.deb ... 828s Unpacking python3-matplotlib (3.8.3-3) ... 828s Selecting previously unselected package python3-pandas-lib:armhf. 828s Preparing to unpack .../82-python3-pandas-lib_2.2.3+dfsg-5_armhf.deb ... 828s Unpacking python3-pandas-lib:armhf (2.2.3+dfsg-5) ... 828s Selecting previously unselected package python3-pandas. 828s Preparing to unpack .../83-python3-pandas_2.2.3+dfsg-5_all.deb ... 828s Unpacking python3-pandas (2.2.3+dfsg-5) ... 828s Selecting previously unselected package python3-treetime. 828s Preparing to unpack .../84-python3-treetime_0.11.4-1_all.deb ... 828s Unpacking python3-treetime (0.11.4-1) ... 828s Selecting previously unselected package autopkgtest-satdep. 828s Preparing to unpack .../85-2-autopkgtest-satdep.deb ... 828s Unpacking autopkgtest-satdep (0) ... 828s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 828s Setting up liblcms2-2:armhf (2.16-2) ... 828s Setting up libpixman-1-0:armhf (0.44.0-3) ... 828s Setting up libsharpyuv0:armhf (1.4.0-0.1) ... 828s Setting up liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 828s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 828s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 828s Setting up libxcb-render0:armhf (1.17.0-2) ... 828s Setting up fonts-lyx (2.4.2.1-1) ... 828s Setting up x11-common (1:7.7+23ubuntu3) ... 829s Setting up libdeflate0:armhf (1.22-1) ... 829s Setting up libqhull-r8.0:armhf (2020.2-6build1) ... 829s Setting up python3-all (3.12.6-0ubuntu1) ... 829s Setting up libxcb-shm0:armhf (1.17.0-2) ... 829s Setting up libgomp1:armhf (14.2.0-8ubuntu1) ... 829s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 829s Setting up python3-tz (2024.1-2) ... 829s Setting up unicode-data (15.1.0-1) ... 829s Setting up python3-six (1.16.0-7) ... 829s Setting up python3-decorator (5.1.1-5) ... 829s Setting up libfontenc1:armhf (1:1.1.8-1build1) ... 829s Setting up libblas3:armhf (3.12.0-3build2) ... 829s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 829s Setting up python3-packaging (24.1-1) ... 829s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 829s Setting up python3-brotli (1.1.0-2build2) ... 829s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 829s Setting up python3-cycler (0.12.1-1) ... 829s Setting up libimagequant0:armhf (2.18.0-1build1) ... 829s Setting up fonts-dejavu-mono (2.37-8) ... 829s Setting up python3-kiwisolver (1.4.7-2build1) ... 829s Setting up libtcl8.6:armhf (8.6.15+dfsg-2) ... 829s Setting up fonts-dejavu-core (2.37-8) ... 829s Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 829s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 829s Setting up libwebp7:armhf (1.4.0-0.1) ... 829s Setting up libxslt1.1:armhf (1.1.39-0exp1ubuntu1) ... 829s Setting up libopenjp2-7:armhf (2.5.0-2ubuntu1) ... 829s Setting up libharfbuzz0b:armhf (10.0.1-1) ... 829s Setting up python3-dateutil (2.9.0-2) ... 830s Setting up sgml-base (1.31) ... 830s Setting up libxss1:armhf (1:1.2.3-1build3) ... 830s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 830s Setting up python3-mpmath (1.3.0-1) ... 830s Setting up python-matplotlib-data (3.8.3-3) ... 830s Setting up libwebpmux3:armhf (1.4.0-0.1) ... 830s Setting up python3-appdirs (1.4.4-4) ... 830s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 830s Setting up python3-sympy (1.13.3-1) ... 837s Setting up liblapack3:armhf (3.12.0-3build2) ... 837s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 837s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 837s Setting up libwebpdemux2:armhf (1.4.0-0.1) ... 837s Setting up python3-freetype (2.5.1-1) ... 837s Setting up xfonts-utils (1:7.7+7) ... 837s Setting up python3-fs (2.4.16-4) ... 837s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 837s Setting up libraqm0:armhf (0.10.1-1build1) ... 837s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 839s Setting up python3-lxml:armhf (5.3.0-1) ... 839s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 839s Setting up xml-core (0.19) ... 840s Setting up python3-contourpy (1.3.0-2) ... 840s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 840s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 840s Setting up libxft2:armhf (2.3.6-1build1) ... 840s Setting up python3-scipy (1.13.1-5) ... 843s Setting up libtk8.6:armhf (8.6.15-1) ... 843s Setting up python3-pandas-lib:armhf (2.2.3+dfsg-5) ... 843s Setting up python3.12-tk (3.12.7-3) ... 843s Setting up fonts-urw-base35 (20200910-8) ... 843s Setting up libcairo2:armhf (1.18.2-2) ... 843s Setting up python3-pil:armhf (10.4.0-1ubuntu1) ... 844s Setting up python3-pandas (2.2.3+dfsg-5) ... 849s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 849s Setting up python3-cairo (1.26.1-2) ... 849s Setting up blt (2.5.3+dfsg-7build1) ... 849s Setting up python3-tk:armhf (3.12.6-1ubuntu1) ... 849s Setting up python3-pil.imagetk:armhf (10.4.0-1ubuntu1) ... 849s Setting up python3-rlpycairo (0.3.0-3) ... 849s Setting up python3-reportlab (4.2.5-1) ... 850s Setting up python3-fonttools (4.46.0-1build2) ... 851s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 851s Setting up python3-matplotlib (3.8.3-3) ... 853s Processing triggers for libc-bin (2.40-1ubuntu3) ... 853s Processing triggers for man-db (2.12.1-3) ... 853s Processing triggers for sgml-base (1.31) ... 853s Setting up w3c-sgml-lib (1.3-3) ... 880s Setting up python3-biopython (1.84+dfsg-4build1) ... 882s Setting up python3-treetime (0.11.4-1) ... 882s Setting up autopkgtest-satdep (0) ... 899s (Reading database ... 70309 files and directories currently installed.) 899s Removing autopkgtest-satdep (0) ... 911s autopkgtest [21:51:55]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import treetime; print(treetime)" ; done 911s autopkgtest [21:51:55]: test autodep8-python3: [----------------------- 913s Testing with python3.12: 914s 914s autopkgtest [21:51:58]: test autodep8-python3: -----------------------] 919s autodep8-python3 PASS (superficial) 919s autopkgtest [21:52:02]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 923s autopkgtest [21:52:07]: @@@@@@@@@@@@@@@@@@@@ summary 923s run-unit-test PASS 923s autodep8-python3 PASS (superficial)